ID:

dvi_13241

 Coordinate:

scaffold_12970:5639675-5639938 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ18873-cds]; exon [dvir_GLEANR_3691:7]; CDS [Dvir\GJ18873-cds]; exon [dvir_GLEANR_3691:6]; intron [Dvir\GJ18873-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAAGTCGACACGCATGATGCAGGCCGAGGAGGCCGTATCTCGCATAAAGGTGTGTACCTTCAGCTCTGTGTCAATATATGCAGTTACGCTCCATTTAGAATATGCTCGGTAAATTGTTGCTCTTTGTCTATAATGCGTCTTGCTTTTCTCGTCCATGCCCTTCAAAAAAATAAAATAAAAACCCATGCTGCTCACTCCTCGATATATTTAGGCTTTGGTAAGCAACCAATACAAAATAAACACCTAAAAGCCACAACTTGGGTCTAGTCAGAGGTAAACTTATTGGATTTTTGTTGTGTTTCTTTGTTGTCAGGCGCCAGAAGGCGAAAGTCAGCCAAGCACCGAGGTGGATCTGTTCATATC
**************************************************.(((.((((...((((.((((((.......(((((.((((......((((........(((((....))))).....))))....))))...((.............))............................))))).........))))))....))))..)))).)))...............(((....((((.((((((..(((((((((..(((.....))))))))))))..))))))...))))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060666
160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 V116
male body		 SRR060687
9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060659
Argentina_testes_total
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060665
9_females_carcasses_total
 M047
female body
 M028
head
 SRR060664
9_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 M061
embryo
 SRR060657
140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060658
140_ovaries_total
 V053
head
 SRR060655
9x160_testes_total
 V047
embryo
 SRR060681
Argx9_testes_total
 SRR060670
9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR1106719
embryo_8-10h
 SRR060689
160x9_testes_total
 SRR1106727
larvae
 SRR1106728
larvae
 SRR1106729
mixed whole adult body
 SRR060678
9x140_testes_total
 SRR1106715
embryo_4-6h
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTCTTGGATTT......................................................................... 24 3 1 323.00 323 35 52 42 9 25 21 16 24 9 5 7 11 9 7 13 9 3 0 4 6 3 5 1 2 1 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTCTTGGATT.......................................................................... 23 3 1 307.00 307 44 21 15 32 20 16 17 8 13 18 10 9 11 13 5 8 9 11 4 3 4 1 2 3 1 1 2 3 1 0 0 0 0 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTCTTGGAT........................................................................... 22 3 15 61.40 921 145 58 59 78 57 40 31 32 42 62 46 62 15 33 19 28 14 21 6 13 8 4 12 3 5 8 4 0 2 3 0 5 3 2 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGAGGTGAAATTCTTGGATTT......................................................................... 22 3 7 34.00 238 21 21 9 42 20 4 11 4 17 3 21 10 7 10 5 8 6 0 3 0 1 2 2 0 6 0 0 0 1 0 0 3 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................TCAGAGGTGAAATTCTTGGATTT......................................................................... 23 3 2 30.50 61 4 8 1 8 7 1 2 2 9 2 5 1 0 0 2 1 0 1 3 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGAGGTGAAATTCTTGGATT.......................................................................... 21 3 20 19.80 396 69 22 21 19 31 10 11 33 7 8 17 16 9 29 21 18 13 6 13 0 7 3 2 0 4 2 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GTCTAGTTGGAGGTAAAC.................................................................................... 18 2 9 14.89 134 0 0 0 0 6 0 0 0 0 43 3 12 12 5 0 0 5 36 0 0 2 0 0 0 2 0 2 0 0 3 0 0 0 0 0 0 1 0 1 1 0 0
............................................................................................................................................................................................................................................................................TCAGAGGTGAAATTCTTGGAT........................................................................... 21 3 16 12.81 205 28 19 13 6 18 5 5 14 4 18 8 12 2 6 8 9 2 14 2 0 5 2 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 1
............................................................................................................................................................................................................................................................................TCAGAGGTGAAATTCTTGGATT.......................................................................... 22 3 2 7.00 14 1 2 0 0 0 0 1 1 1 0 1 0 0 0 0 1 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGAGGTAAAATTCTTGGAT........................................................................... 20 2 1 4.00 4 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TAGTCAGAGGTGAAATTCTTG.............................................................................. 21 3 1 3.00 3 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TAGTCAGAGGTGAAATTCTTGGA............................................................................ 23 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TAGTCAGAGGTGAAATTCTTGG............................................................................. 22 3 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTAAAATTCTTGGA............................................................................ 21 2 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGTCAGAGGTGAACTTCTTGGATT.......................................................................... 24 3 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTTTTGGATT.......................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAGTTCTTGGAT........................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGAGGTGAAATTATTGGATT.......................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTATTGGATTT......................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTATTGGATTTAT....................................................................... 26 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTCTTGGATTTTT....................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGTCAGAGGTGAAATTATTGGATT.......................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTATTGGA............................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTATTGGAT........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AGTCTAGTCGGAGGTAAAC.................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTAAAATTCTTGGAT........................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TCAGAGGTGAAATTATTGGATTTA........................................................................ 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................AAGCACCGAGGTGGATCTGTT...... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTGTCAGAGGTGAAATTATTGGA............................................................................ 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GTCTAGTTAGAGGTAAAC.................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGAGGTGAAATTTTTGGATTT......................................................................... 22 3 2 1.00 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAACTTCTTGGATTTAT....................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TCAGAGGTGAAGTTCTTGGATT.......................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................GCACCGAGGTGGATCTGTT...... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGTCAGAGGTAAAATTCTTGGA............................................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGTCAGAGGTGAAATTCTTGGAT........................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GCCAAGCACCGAGGTGGATC.......... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTGTCAGAGGTAAAATTCTTGGATT.......................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGTCAGAGGTAAAATTCTTGG............................................................................. 21 3 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAAATTTTTGGAT........................................................................... 22 3 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GAGGTGAACTTCTTGGATTT......................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TGATGCAGGCCGAGGAGGCCGT....................................................................................................................................................................................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................AGTCACCTAAGCACCAAGGTG.............. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGTCAGAGGTGAACTTCTTGGA............................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTGTCAGAGGTGAACTTCTTGGA............................................................................ 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAACTTCTTG.............................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTGTCAGAGGTAAAATTCTTG.............................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CGGCAGATTGTTGCTCTTTCT............................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTGAACTTCTTGGC............................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CAAGTCAACACTCTTGATGC....................................................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TCAGAGGTGAAATTTTTGGAT........................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................CAAGCACAGAGTTGGATC.......... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTCAGAGGTCAAATTCTTGGATT.......................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGTCAGAGGTAAAATTCTTG.............................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TCAGAGGTGAAGTTCTTGGA............................................................................ 20 3 19 0.11 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGTCAGAGGTGAAATTCTT............................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GGAGCCAAAAGGCGAAAG................................. 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGAGGTAAAATTCTTGGA............................................................................ 19 2 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGAGGTGAAATTATTGGA............................................................................ 19 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGTCAGAGGTGAAATTCTTGGA............................................................................ 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ACTCTTAGTCTATAATGCC.................................................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGAGGTGAAATTATTGGAT........................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CAGAGGTGAACTTCTTGG............................................................................. 18 2 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CGGGAAATTGTTGCTGTT............................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GACACGCATGCTTCAGGT................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGTCAGAGGTGAAATTCTTG.............................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TAAAGGCTACAACGTGGGT.................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GGCCGTATCTACCAGAAA........................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CATGATGCAGGTGGAGGAA............................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGTTCAGCTGTGCGTACTACGTCCGGCTCCTCCGGCATAGAGCGTATTTCCACACATGGAAGTCGAGACACAGTTATATACGTCAATGCGAGGTAAATCTTATACGAGCCATTTAACAACGAGAAACAGATATTACGCAGAACGAAAAGAGCAGGTACGGGAAGTTTTTTTATTTTATTTTTGGGTACGACGAGTGAGGAGCTATATAAATCCGAAACCATTCGTTGGTTATGTTTTATTTGTGGATTTTCGGTGTTGAACCCAGATCAGTCTCCATTTGAATAACCTAAAAACAACACAAAGAAACAACAGTCCGCGGTCTTCCGCTTTCAGTCGGTTCGTGGCTCCACCTAGACAAGTATAG
**************************************************.(((.((((...((((.((((((.......(((((.((((......((((........(((((....))))).....))))....))))...((.............))............................))))).........))))))....))))..)))).)))...............(((....((((.((((((..(((((((((..(((.....))))))))))))..))))))...))))..)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060655
9x160_testes_total
 V047
embryo
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
................................................................................................................................................................................................................................................TGTGGATTTTCGGTGTTGAAC....................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................AAACAAGACAAAGGAACAACA..................................................... 21 2 7 0.14 1 0 0 1 0 0 0
...............................................................................................................................................................GGAAGGTGTTTTATTCTATTTT....................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 1 0 0
.....................................................................................................................................................................................................GGAACTATATAAGTCCGA..................................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................CTATCTGTCGGTTCGTGGAT.................. 20 3 8 0.13 1 0 0 0 0 1 0
...............................................................................................................................................GAAAAGAGCAGGCACACGA.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................ATTAGTTGGTGATGTTTT............................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:5639625-5639988 - dvi_13241 CCAAGTCGACACGCATGATGCAGGCCGAGGAGGCCGTATCTCGCATAAAGGTGTGTACC---T----TC-AGC-------TCT--------G----TG---------------------------------TCAATATATGCAGTTACGCTCCATTTA-GAA-----TATGCTCGGTAAATTG-----------------------------------------------------------------------------------TT-GCTC-----------------------TTTG-----T---------CTATAAT------G-----CGTCTTGCTTTTCTCGTCCATGCCCTTCAAAAAAATAAA-----------------------ATAAAAACCCA---TGCTGCTCACTCCTCGATA----T------A---------------------------------------------------TTTAGGCTTTGGTAAGCAACCAATACAAAATAAACACCTAAAAGCCA---------------------CAACT-----------------------------------------------------------------------------------------------------------------------------TGGGT----------------------------------CTAGTCAGAG------------------------GTAAA----CTTATT---------------------GG-------------------ATTT-----------------------T-----TGTT------------------------G------TGTTTCTT---------TG--------TTGTCAGGCGCCAGAAGGCGAAAGTCAGCCAAGCACCGAGGTGGATCTGTTCATATC
droMoj3 scaffold_6473:16017874-16018231 + CCAAGTCGACGCGCATGATGCAAGCCGAGGAGGCCGTCTCCCGCATCAAGGTATGTGCC---C----CT-AGC-------TCA--------T----TG---------------------------------ACCTCATGTCCAGTTGCGTCCCATTTA-GCA-----TATGCTTGGTCTATTG-----------------------------------------------------------------------------------TC---------------------------GC--C-----TCTTT---GTCTATAAT------GCAT-----CTCGCTTTTCTCGCCCACACCC---ACACCCCTAAA-----------------------TT---AACCCA---TGCTGCGTAATCCTCGATA----T------C---------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACACAAATCAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGA--TCAC-----------------AATT---------------------ATTTGTTTTGCAT-------CA-CGTTTGCAAGTGACTGACGAG----A-----CG--------------------------------GT-TTCATT---------TG--------TTGCCAGGCGCCAGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGATCTGTTCATATC
droGri2 scaffold_15203:7702504-7702930 + CGAAATCAACCCGTATGATGCAGGCCGAGGAGGCCGTTTCCCGCATAAAGGTGTGTAGA---T----CG-AGC-------TC--------------------------------------ATCAGTTCAGTTCAATTGTTTCAGTTGCGCTCC-TTTA-GCAAAAATTATGCTCGTTTAACTGTGGCTCTGTCTCTCTCTCTCTCTCTCTCACACACACACACTATCTCTCTATTC--------------------------------------------------------------------------------------------GTTT-----CTCGC-TTTCTCGTCCATTCCC--CAATAAAACAAATAAAAAAATAAACAAAAATATTAACAACAACCCA---TGCTGCTCACTCCTTGATA----T------G---------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACAGAAACCTAA-----------------------------------------------------------------------------------------------------------------------------------------------CACTTCGAATTGAGTG-----TTGTCCCAG-T-----TCTGTGAACA-GTT---------------------------------------------------------T---------------------GT-------------------AAA------------------------------TGT-----------------TGT-----T----TGT-TTGTTT---------TG--------TTGACAGGCGCCCGAAGGCGAAAGTCAGCCCAGCACCGAGGTGGATCTGTTCATATC
droWil2 scf2_1100000004909:8661325-8661713 + CAAAATCCACACGTATGATGCAGGCCGAGGAGGCAGTCTCTCGCATTAAGGTAAGTTCA---T--A--T-AAT-------TTG-ATTCGATTCGAATGAATCCC----ACA-AAAAC---------------------------------------------------------------------------------------------------------------------------------------ACCTTAGCTAGGCTAG-CTTCCCCCATAACTT--------A-CATATA-----TGTAT---GTCT-----------------CG-G-CTTTTTTCTCTTG----CC--------------------------------------------ACCCT---TGCTGCTCATTCCTCACTCTGTCTGTCTCTCAAAATCAAAACAAAAAAAAAAAAAACAAAACAAAAAACCAAATAAAACAAAAATAGGCTTTGGTAAGCATA------------------------------------------------ATTCT-----------------------------------------------------------------------------------------------------------------------------TTGG---------------GTGAACA-AAT---------------------------------------------------------C---------------------GT-------------------TTCA-----------------------T-----TGTTTTTTATAAACTAATTTTATAA--CTT-----TA-CTCTT---------CG--------CTACCAGGCGCCAGAGGGTGAAAGTCAACCTAGCACTGAGGTCGATCTATTCATATC
dp5 XL_group1e:7681017-7681373 - CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCG----TG-ACC-------CCCGCACCGA-----------CAC----GTAGTGGC-----CCCATCCTAC---------------------------C---------------------------------------CT------------------------A--------------------------CCTCATTGCTAGGCTATTGCTATGTG---------------CT-AAATG-----TGTGTCGTGTCTAA--A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCCTT--------------T---------------------------------------------------GATAGGCTTTGGTAAGAGAT---------------------------------------------------TGTTCGA------------TTGTTAATCCCCTC------------------------------------------------------------------------------------------------------TCC-----ATGGCTGTCCGA---------------------------------AATCAGCA-------------G--------------------------------------ATACT-G--ATC-----------------------TC-----TGT-----------------TTTCTGT---------------TTGTATTCATTTCCGTCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATC
droPer2 scaffold_13:875299-875650 + CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCG----TG-ACC-------CCCGCACCGA-----------CAC----GTAGTGGC-----CCCATCCTA-------------------------------------------------------------------------------------------------------------------------CCTCATTGCTAGGCTATTGCTGTGTG---------------CT-AAATG-----TGTGTCGTGTCTAA--A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTTT--------------T---------------------------------------------------GATAGGCTTTGGTAAGAGAT---------------------------------------------------TGTTCGA------------TTGTTAATCCCCTC------------------------------------------------------------------------------------------------------TCC-----ATGGCTGTCCGA---------------------------------AATCAGCA-------------G--------------------------------------ATACT-G--ATC-----------------------TC-----TGT-----------------TTTCTGT---------------TTGTATTCATTTCCATCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATC
droAna3 scaffold_13248:2925758-2925809 - CCAAGTCGACGCGGATGATGCAGGCCGAGGAGGCTGTCTCCCGGATAAAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396429:92025-92497 + CCAAGTCCACGCGAATGATGCAGGCCGAGGAGGCCGTTTCCCGGATAAAGGTAATTACC---A-----------------------------------------------------------GGATCCAA----------------------------GCCAG---------------------GGAT--------CCCCCACTAT--------CCCCCACTCTATCTATCCATTCATATCCCGGTATCCTAATCCCCGGTAGGCTAT-GCTC-----------------------TATG-----TGTTT---GTCTAAAAAAAGAATATTTCTTG-TTCGCTTTTTTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGAAGTTTGGCCCACTCGAGA------------TTACATAAACAATATGTATATAGTCTTTGGATGAACCGAGTTCTTGGTTGTCCTCTCGGCTTGTCGGCACAGCTTCAGAGAGAATGATCTGTGGCGACAACTGGAGGAGGACGACAATAGAAGGACTCAGTGCTTCCAACCAGGTG-----T------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAATGC-----------------TTC--------------TTA-TTTGT------TC--------CACGCAGGCACCCGAAGGCGAGAGCCAGCCGAGCACCGAGGTAGACCTGTTCATATC
droKik1 scf7180000302230:550784-551147 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTATGTGCA---A--AATA-AGC-------CCTAAATCTA-----------CAG----ATCAAGAGC-CCCTCC----GA-------------------------------------------------------------------------------------------------------------------------CAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTCTC-TGTCTAAAAA-----TATTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCCTGCTGCTGCGCATTCCTCTATCACTCT------G---------------------------------------------------TATAGGCTTTGGTAAGAGAT---------------------------------------------------CGATCGA------------TCG------------------------------------------------------------------------------------------------ATCGTTGTGTTGGCCCCCA--------------------------------TTAAGAACCTAGTGCCAGATATCCCCC-------------G--------------------------------------AAATTCG--AGT-----------------------CC-----TTT-----------------TTCAT--GTTTACCTT-CCGTTT---------CT--------TAACCAGGCTCCCGAGGGCGAGAGCCAGCCGAGCACCGAAGTGGACCTGTTCATATC
droFic1 scf7180000454077:702064-702405 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTAAGTGAT---ATGA--A-AAC-------CCC--------T----CAAATCAC----ATA-GAACC-ACATCCATCCAA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTCTATT---------------G-TGTGTG-----TTTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCC--------------GACT--AT---------------AGAA-TTAGTATTAGA--TCCCCTA-G----AA----GGCACT---------------------ATTTATTTTTGAA-------CA-CT-----------------------T-----TG---------------------------------TTCTTATT---------TT--------TCATCAGGCCCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droEle1 scf7180000491001:241781-242155 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTGTCCAGGATCAAGGTAGGTACA---G----TG-AAC-------CCT-------CTTGAGGGAAGCGT----AC----AGCAACCTCCATCCAAG---------------------------A--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTCTATGCTCGCTCAATGTGTGTGTGCGTG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCACCTAAATAAAATAGTTGACA-AAC---------------------------------------------------AT----GGACTCCCCCCTCATAGTTAATACTCGATTTAAGACATT-G--ATT-----------------------TA-----TAT------------------------TT---A--TG--TTGT---------TC--------TTACCAGGCTCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTCTTCATATC
droRho1 scf7180000779333:720157-720492 + CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTCTCCAGGATCAAGGTAAGTAGG---C----TA-AGC-------CCC--------G----TGGAGCACT---ACA-AAACC-ACCTCCATCCAA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCCTTA-----ATCGTTGCAA-AATAAA-----ACCCT------------------------CTT-T----AA----AGTATT---------------------ATTTATTATAAAA-------TG-CT-----------------------------TA------------------TTC----ATA-----TA--ATAT---------TC--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droBia1 scf7180000301760:3512674-3513012 + CCAAGTCGACCCGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTGCA---C-----G-AAC-------CCGGCG-----G----TGAAGCAC----GTA--AAGC-ACATTCATCCA-----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCCCTCTG---------------CT-CTCTG-----TGTGT---GTCTAAC-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCCTCT-----ATAGTTGACCGAAAGAA-----ACCT------------------------CCTAAG----AA----GGC-CT---------------------ATTTACT-----------AACATCT-----------------------A-----CGT-------------------------T------TCTTGCAT---------TT--------CCGCCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGACCTGTTCATATC
droTak1 scf7180000415210:536486-536693 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTAGT---GTT---A-AGCCCCCACCCCG--------G----TGGTGAACTAACATG-GAAGC-ACAATCATCCAA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTA------------------------------------TGTGTTTTGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCTCT------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409271:566368-566720 + CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCTGTCTCCAGGATCAAGGTAAGTAAT---GGG---A-AAC-------CCT--------G----TGAACCAC----ATA-AAAGC-ACAACCATCCGA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTTA-----------AAGTGTGTTTGTGTG-----TGTGT---GTCTAAA-A------TTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTAT--------------C---------------------------------------------------GATAGGCTTTGGTAAGAGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCCTTT-----ATAGTTGAA--AACAAA-----ACCAA--------------------TTCCCCA-A----CAAACAG----G---------------------ATTCGTTTTAACA-------TA--------------------------------------------------------TTT---------------TTGTATATATTTCT---GATTAACTAGGCTCCCGAAGGTGAAAGCCAACCGAGCACTGAAGTGGACCTGTTCATATC
dm3 chrX:17497819-17498153 + CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---GTGA--A-AAC-------CTG--------G----TGATGCAC----ACG-AAAGC-ACATCCATTCAAG---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGTTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGTT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCT-T-----TCAGTCGTCA-AATGAT-----AGCATTAAGAA------------------------TTAAA----TGCATT---------------------AT----------------ATAATAT-----------------------A-----TGAT------------------------T------TGCTATTT---------TT--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droSim2 x:16611038-16611369 + dsi_3537 CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--A--A-AAC-------CTG--------G----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGTT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCT-T-----TCAGTCGACA-AATAAT-----ACTATTAAGAA------------------------GTAAA----TGCATT---------------------AT----------------ATCATAT-----------------------A-----TGAT------------------------T------TGTTA-TT---------TT--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droSec2 scaffold_17:1340652-1340984 + CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--A--A-AAC-------CTT--------G----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGTT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCTTT-----TTAGTCGACA-AATGAT-----ACTATTAAGAA------------------------GTAAA----TGCATT---------------------AT----------------ATAATAT-----------------------A-----TGAT------------------------T------TGTTA-TT---------TT--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droYak3 X:16125579-16125917 + CCAAGTCGACCAGAATGATGCAGGCGGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---C--A--AGAAC-------CTG--------A----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCCTT-----TTAGTTGACA-AATAAT-----ACCATTTAGAC------------------------GTAAA----TGCATT---------------------AT----------------ACA-TTT-------------------ATATA-----CAT------------------------TT---TTGG-TTTTGT---------TT--------TTAACAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droEre2 scaffold_4690:7835292-7835626 + CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATTAAGGTAAGTGAA---G-----A-AAC-------CTG--------G----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCAAT-GCTC-----------------------TATG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCTAT-----TCAGTTGACT-GATAATGTAGAACCAT------------------------CTAAGCGTAAA----TGCATT---------------------AT----------------ACAATTT-----------------------A-----CAC------------------------TT--------TTATTT---------TC--------TTGACAGGCTCCCGAGGGCGAAAGTCAGCCAAGCACTGAAGTGGACCTGTTCATATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCAAGTCGACACGCATGATGCAGGCCGAGGAGGCCGTATCTCGCATAAAGGTGTGTACC---T----TC-AGC-------TCT--------G----TG---------------------------------TCAATATATGCAGTTACGCTCCATTTA-GAA-----TATGCTCGGTAAATTG-----------------------------------------------------------------------------------TT-GCTC-----------------------TTTG-----T---------CTATAAT------G-----CGTCTTGCTTTTCTCGTCCATGCCCTTCAAAAAAATAAA-----------------------ATAAAAACCCA---TGCTGCTCACTCCTCGATA----T------A---------------------------------------------------TTTAGGCTTTGGTAAGCAACCAATACAAAATAAACACCTAAAAGCCA---------------------CAACT-----------------------------------------------------------------------------------------------------------------------------TGGGT----------------------------------CTAGTCAGAG------------------------GTAAA----CTTATT---------------------GG-------------------ATTT-----------------------T-----TGTT------------------------G------TGTTTCTT---------TG--------TTGTCAGGCGCCAGAAGGCGAAAGTCAGCCAAGCACCGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACCGAGGTGGATCTGTT......2111.001000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGAGGTGGATCTGTT......1911.001000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCACCGAGGTGGATC..........2011.001000000000000000000001000000000000000000000000000000000000000000
...............TGATGCAGGCCGAGGAGGCCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000000000000000000000010000000000000000000000000000000000000000
droMoj3
CCAAGTCGACGCGCATGATGCAAGCCGAGGAGGCCGTCTCCCGCATCAAGGTATGTGCC---C----CT-AGC-------TCA--------T----TG---------------------------------ACCTCATGTCCAGTTGCGTCCCATTTA-GCA-----TATGCTTGGTCTATTG-----------------------------------------------------------------------------------TC---------------------------GC--C-----TCTTT---GTCTATAAT------GCAT-----CTCGCTTTTCTCGCCCACACCC---ACACCCCTAAA-----------------------TT---AACCCA---TGCTGCGTAATCCTCGATA----T------C---------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACACAAATCAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAGA--TCAC-----------------AATT---------------------ATTTGTTTTGCAT-------CA-CGTTTGCAAGTGACTGACGAG----A-----CG--------------------------------GT-TTCATT---------TG--------TTGCCAGGCGCCAGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................CCATTTA-GCA-----TATGCTTGGTCTATTG-----------------------------------------------------------------------------------TC---------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGGCGAAAGTCAGCCGAGCACCGA..................2811.001000001
droGri2
CGAAATCAACCCGTATGATGCAGGCCGAGGAGGCCGTTTCCCGCATAAAGGTGTGTAGA---T----CG-AGC-------TC--------------------------------------ATCAGTTCAGTTCAATTGTTTCAGTTGCGCTCC-TTTA-GCAAAAATTATGCTCGTTTAACTGTGGCTCTGTCTCTCTCTCTCTCTCTCTCACACACACACACTATCTCTCTATTC--------------------------------------------------------------------------------------------GTTT-----CTCGC-TTTCTCGTCCATTCCC--CAATAAAACAAATAAAAAAATAAACAAAAATATTAACAACAACCCA---TGCTGCTCACTCCTTGATA----T------G---------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACAGAAACCTAA-----------------------------------------------------------------------------------------------------------------------------------------------CACTTCGAATTGAGTG-----TTGTCCCAG-T-----TCTGTGAACA-GTT---------------------------------------------------------T---------------------GT-------------------AAA------------------------------TGT-----------------TGT-----T----TGT-TTGTTT---------TG--------TTGACAGGCGCCCGAAGGCGAAAGTCAGCCCAGCACCGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........CCCGTATGATGCAGGCCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
droWil2
CAAAATCCACACGTATGATGCAGGCCGAGGAGGCAGTCTCTCGCATTAAGGTAAGTTCA---T--A--T-AAT-------TTG-ATTCGATTCGAATGAATCCC----ACA-AAAAC---------------------------------------------------------------------------------------------------------------------------------------ACCTTAGCTAGGCTAG-CTTCCCCCATAACTT--------A-CATATA-----TGTAT---GTCT-----------------CG-G-CTTTTTTCTCTTG----CC--------------------------------------------ACCCT---TGCTGCTCATTCCTCACTCTGTCTGTCTCTCAAAATCAAAACAAAAAAAAAAAAAACAAAACAAAAAACCAAATAAAACAAAAATAGGCTTTGGTAAGCATA------------------------------------------------ATTCT-----------------------------------------------------------------------------------------------------------------------------TTGG---------------GTGAACA-AAT---------------------------------------------------------C---------------------GT-------------------TTCA-----------------------T-----TGTTTTTTATAAACTAATTTTATAA--CTT-----TA-CTCTT---------CG--------CTACCAGGCGCCAGAGGGTGAAAGTCAACCTAGCACTGAGGTCGATCTATTCATATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................AGGCCGAGGAGGCAGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...........CGTATGATGCAGGCCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTGAGGTCGATCTATTCATAT.2511.00101000
.......CACACGTATGATGCAGGCCGAGGAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTCAACCTAGCACTGAGGTC..............2411.00100010
dp5
CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCG----TG-ACC-------CCCGCACCGA-----------CAC----GTAGTGGC-----CCCATCCTAC---------------------------C---------------------------------------CT------------------------A--------------------------CCTCATTGCTAGGCTATTGCTATGTG---------------CT-AAATG-----TGTGTCGTGTCTAA--A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCCTT--------------T---------------------------------------------------GATAGGCTTTGGTAAGAGAT---------------------------------------------------TGTTCGA------------TTGTTAATCCCCTC------------------------------------------------------------------------------------------------------TCC-----ATGGCTGTCCGA---------------------------------AATCAGCA-------------G--------------------------------------ATACT-G--ATC-----------------------TC-----TGT-----------------TTTCTGT---------------TTGTATTCATTTCCGTCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAGCACGGAGGTGGATCTGTT......2511.0010010000000
.......GACGCGAATGATGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCACGGAGGTGGATCTGTTCA....2311.0010000010000
droPer2
CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCG----TG-ACC-------CCCGCACCGA-----------CAC----GTAGTGGC-----CCCATCCTA-------------------------------------------------------------------------------------------------------------------------CCTCATTGCTAGGCTATTGCTGTGTG---------------CT-AAATG-----TGTGTCGTGTCTAA--A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTTT--------------T---------------------------------------------------GATAGGCTTTGGTAAGAGAT---------------------------------------------------TGTTCGA------------TTGTTAATCCCCTC------------------------------------------------------------------------------------------------------TCC-----ATGGCTGTCCGA---------------------------------AATCAGCA-------------G--------------------------------------ATACT-G--ATC-----------------------TC-----TGT-----------------TTTCTGT---------------TTGTATTCATTTCCATCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCCGAGGGCGAGAGC................................1811.001000001
droAna3
CCAAGTCGACGCGGATGATGCAGGCCGAGGAGGCTGTCTCCCGGATAAAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......GACGCGGATGATGCAGGCCGAGGAGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............GATGATGCAGGCCGAGGAGGCTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....GTCGACGCGGATGATGCAGGCCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501000001
CCAAGTCGACGCGGATGATGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501010000
droBip1
CCAAGTCCACGCGAATGATGCAGGCCGAGGAGGCCGTTTCCCGGATAAAGGTAATTACC---A-----------------------------------------------------------GGATCCAA----------------------------GCCAG---------------------GGAT--------CCCCCACTAT--------CCCCCACTCTATCTATCCATTCATATCCCGGTATCCTAATCCCCGGTAGGCTAT-GCTC-----------------------TATG-----TGTTT---GTCTAAAAAAAGAATATTTCTTG-TTCGCTTTTTTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGAAGTTTGGCCCACTCGAGA------------TTACATAAACAATATGTATATAGTCTTTGGATGAACCGAGTTCTTGGTTGTCCTCTCGGCTTGTCGGCACAGCTTCAGAGAGAATGATCTGTGGCGACAACTGGAGGAGGACGACAATAGAAGGACTCAGTGCTTCCAACCAGGTG-----T------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAATGC-----------------TTC--------------TTA-TTTGT------TC--------CACGCAGGCACCCGAAGGCGAGAGCCAGCCGAGCACCGAGGTAGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droKik1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTATGTGCA---A--AATA-AGC-------CCTAAATCTA-----------CAG----ATCAAGAGC-CCCTCC----GA-------------------------------------------------------------------------------------------------------------------------CAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTCTC-TGTCTAAAAA-----TATTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCCTGCTGCTGCGCATTCCTCTATCACTCT------G---------------------------------------------------TATAGGCTTTGGTAAGAGAT---------------------------------------------------CGATCGA------------TCG------------------------------------------------------------------------------------------------ATCGTTGTGTTGGCCCCCA--------------------------------TTAAGAACCTAGTGCCAGATATCCCCC-------------G--------------------------------------AAATTCG--AGT-----------------------CC-----TTT-----------------TTCAT--GTTTACCTT-CCGTTT---------CT--------TAACCAGGCTCCCGAGGGCGAGAGCCAGCCGAGCACCGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droFic1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTAAGTGAT---ATGA--A-AAC-------CCC--------T----CAAATCAC----ATA-GAACC-ACATCCATCCAA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTCTATT---------------G-TGTGTG-----TTTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCC--------------GACT--AT---------------AGAA-TTAGTATTAGA--TCCCCTA-G----AA----GGCACT---------------------ATTTATTTTTGAA-------CA-CT-----------------------T-----TG---------------------------------TTCTTATT---------TT--------TCATCAGGCCCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droEle1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTGTCCAGGATCAAGGTAGGTACA---G----TG-AAC-------CCT-------CTTGAGGGAAGCGT----AC----AGCAACCTCCATCCAAG---------------------------A--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTCTATGCTCGCTCAATGTGTGTGTGCGTG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCACCTAAATAAAATAGTTGACA-AAC---------------------------------------------------AT----GGACTCCCCCCTCATAGTTAATACTCGATTTAAGACATT-G--ATT-----------------------TA-----TAT------------------------TT---A--TG--TTGT---------TC--------TTACCAGGCTCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTCTTCATATCSizeHit CountTotal NormTotal
No Reads
droRho1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTCTCCAGGATCAAGGTAAGTAGG---C----TA-AGC-------CCC--------G----TGGAGCACT---ACA-AAACC-ACCTCCATCCAA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCCTTA-----ATCGTTGCAA-AATAAA-----ACCCT------------------------CTT-T----AA----AGTATT---------------------ATTTATTATAAAA-------TG-CT-----------------------------TA------------------TTC----ATA-----TA--ATAT---------TC--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droBia1
CCAAGTCGACCCGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTGCA---C-----G-AAC-------CCGGCG-----G----TGAAGCAC----GTA--AAGC-ACATTCATCCA-----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCCCTCTG---------------CT-CTCTG-----TGTGT---GTCTAAC-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCCTCT-----ATAGTTGACCGAAAGAA-----ACCT------------------------CCTAAG----AA----GGC-CT---------------------ATTTACT-----------AACATCT-----------------------A-----CGT-------------------------T------TCTTGCAT---------TT--------CCGCCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droTak1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTAGT---GTT---A-AGCCCCCACCCCG--------G----TGGTGAACTAACATG-GAAGC-ACAATCATCCAA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTA------------------------------------TGTGTTTTGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCTCT------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCTGTCTCCAGGATCAAGGTAAGTAAT---GGG---A-AAC-------CCT--------G----TGAACCAC----ATA-AAAGC-ACAACCATCCGA----------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTTA-----------AAGTGTGTTTGTGTG-----TGTGT---GTCTAAA-A------TTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTAT--------------C---------------------------------------------------GATAGGCTTTGGTAAGAGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTGGCCCCTTT-----ATAGTTGAA--AACAAA-----ACCAA--------------------TTCCCCA-A----CAAACAG----G---------------------ATTCGTTTTAACA-------TA--------------------------------------------------------TTT---------------TTGTATATATTTCT---GATTAACTAGGCTCCCGAAGGTGAAAGCCAACCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
dm3
CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---GTGA--A-AAC-------CTG--------G----TGATGCAC----ACG-AAAGC-ACATCCATTCAAG---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGTTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGTT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCT-T-----TCAGTCGTCA-AATGAT-----AGCATTAAGAA------------------------TTAAA----TGCATT---------------------AT----------------ATAATAT-----------------------A-----TGAT------------------------T------TGCTATTT---------TT--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGCCGAGCACTGAAGTGGA............2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGGAGGCCGTTTCCAGGATCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGCACTGAAGTGGACCTGTTC.....2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAAGTCGACCAGAATGATGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGAATGATGCAGGCCGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGACCTGTTCATT..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................C-ACATCCATTCAAG---------------------------G--------------------------------------------------------------------------------------------AAACCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................ACG-AAAGC-ACATCCATTCAAG---------------------------G--------------------------------------------------------------------------------------------AAACCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----TGCATT---------------------AT----------------ATAATAT-----------------------A-----TGA....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGAATGATGCAGGCCGAGGAGGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCGAAAGTCAGCCGAGCACT....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................GATGCAGGCCGAGGAGGCCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...AGTCGACCAGAATGATGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGCACTGAAGTGGACCTGT.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGTGGACCTGTTCATAT.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGTCA-AATGAT-----AGCATTAAGA..........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCGAGCACTGAAGTGGACCT.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCCGAGCACTGAAGTGGACCT.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGCACTGAAGTGGACCT.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CCAGAATGATGCAGGCCGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGAATGATGCAGGCCGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........CAGAATGATGCAGGCCGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCGACCAGAATGATGCAGGCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AATGATGCAGGCCGAGGAGGCCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACTGAAGTGGACCTGTTCA....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GAATGATGCAGGCCGAGGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCAGCCGAGCACTGACA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AGTGAA---GTGA--A-AAC-------CTG--------G----TGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGTGGACCTGTTCATC..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCCGTTTCCAGGATCAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--A--A-AAC-------CTG--------G----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGTT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCT-T-----TCAGTCGACA-AATAAT-----ACTATTAAGAA------------------------GTAAA----TGCATT---------------------AT----------------ATCATAT-----------------------A-----TGAT------------------------T------TGTTA-TT---------TT--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGCACTGAAGTGGACCTG........2411.00101000000000000000
........ACCAGAATGATGCAGGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..................................CGTTTCCAGGATCAAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGCACTGAAGTGGAC...........1911.00100100000000000000
...........AGAATGATGCAGGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.08100000000001000000
droSec2
CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--A--A-AAC-------CTT--------G----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGTT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCTTT-----TTAGTCGACA-AATGAT-----ACTATTAAGAA------------------------GTAAA----TGCATT---------------------AT----------------ATAATAT-----------------------A-----TGAT------------------------T------TGTTA-TT---------TT--------TTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCGAAAGTCAGCCGAGCACTGAA.................2811.0010100
.CAAGTCGACCAGAATGATGCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------A-----TGAT------------------------T------TGTTA-TT---------TT--------TC.......................................................1930.3311000
droYak3
CCAAGTCGACCAGAATGATGCAGGCGGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---C--A--AGAAC-------CTG--------A----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCTAT-GCTC-----------------------TATG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCCTT-----TTAGTTGACA-AATAAT-----ACCATTTAGAC------------------------GTAAA----TGCATT---------------------AT----------------ACA-TTT-------------------ATATA-----CAT------------------------TT---TTGG-TTTTGT---------TT--------TTAACAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................AGTGAA---C--A--AGAAC-------CTG--------A----TGATGCAC----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEre2
CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATTAAGGTAAGTGAA---G-----A-AAC-------CTG--------G----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA---------------------------G--------------------------------------------------------------------------------------------AAACCCCGCTAGGCAAT-GCTC-----------------------TATG-----TGTGT---GTCTAAA-A------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------------C---------------------------------------------------GATAGGCTTTGGTAAGCGAT---------------------------------------------------CG-----------------------------------------------------------------------------------------------------------------------------TTAGCCCCTAT-----TCAGTTGACT-GATAATGTAGAACCAT------------------------CTAAGCGTAAA----TGCATT---------------------AT----------------ACAATTT-----------------------A-----CAC------------------------TT--------TTATTT---------TC--------TTGACAGGCTCCCGAGGGCGAAAGTCAGCCAAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................GCAGGCTGAGGAGGCCGTTTCCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...AGTCGACCAGAATGATGCAGGCTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001
..........................GAGGAGGCCGTTTCCAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCGAGGGCGAAAGTC...............................1911.0011000000
..........CAGAATGATGCAGGCTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000

Generated: 05/16/2015 at 09:52 PM