ID:

dvi_13234

 Coordinate:

scaffold_12970:5607251-5607385 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6 -3.5 -2.8 -2.6

Flybase annnotation

CDS [Dvir\GJ19283-cds]; CDS [Dvir\GJ19283-cds]; exon [dvir_GLEANR_4170:1]; exon [dvir_GLEANR_4170:2]; intron [Dvir\GJ19283-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
(TC)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_10322:198315-198335 +
  2. scaffold_12723:1920922-1920942 +
  3. scaffold_12726:2729192-2729212 +
  4. scaffold_12823:775911-775931 +
  5. scaffold_12855:9784752-9784772 +
  6. scaffold_12875:98662-98682 +
  7. scaffold_12875:319490-319510 +
  8. scaffold_12875:15274911-15274931 +
  9. scaffold_12875:18498552-18498572 +
  10. scaffold_12928:348300-348320 +
  11. scaffold_12928:7582045-7582065 +
  12. scaffold_12963:18522803-18522823 +
  13. scaffold_12963:19289304-19289324 +
  14. scaffold_12970:2320300-2320320 +
  15. scaffold_12970:2443597-2443617 +
  16. dvi_13234  scaffold_12970:5607323-5607343 +
  17. scaffold_13042:1080009-1080029 +
  18. scaffold_13047:1299495-1299515 +
  19. scaffold_13049:12930746-12930766 +
  20. scaffold_13049:19532356-19532376 +
  21. scaffold_12855:3291603-3291623 +
  22. scaffold_12855:8006735-8006755 +
  23. scaffold_12875:2296418-2296438 +
  24. scaffold_12875:9308970-9308990 +
  25. scaffold_12875:9365047-9365067 +
  26. scaffold_12875:20031863-20031883 +
  27. scaffold_12928:1414962-1414982 +
  28. scaffold_12928:6995986-6996006 +
  29. scaffold_12928:7039773-7039793 +
  30. scaffold_12963:6322129-6322149 +
  31. scaffold_12963:11052574-11052594 +
  32. scaffold_12963:15516533-15516553 +
  33. scaffold_12963:17273754-17273774 +
  34. scaffold_12970:1907549-1907569 +
  35. scaffold_12970:3826765-3826785 +
  36. scaffold_12970:6635283-6635303 +
  37. scaffold_12970:6835876-6835896 +
  38. scaffold_13042:322052-322072 +
  39. scaffold_13049:2618282-2618302 +
  40. scaffold_13049:9319747-9319767 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------##################################################
CTACGGCACCAGCAGCGTTCCACTTATCAGCGATAGCAGCCGCACCAGTGGTAAGTGGCAAACCACCTAAGCCCATCTCCACCCCATCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCGGTGATGACCCGTTTGTTTGTGCGCAGAAATTGCTGATAAGATGCTAAACATGCGTGCGCGGGGCTCCGCAAATGGC
**************************************************************************************************************************.....((..............................(((..(((......)))....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060663
160_0-2h_embryos_total
 M027
male body		 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 M047
female body
.....................................................................................................................................................................................AGTGAAATTGCTGATAAGATGCTAAACA.......................... 28 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................ATGCGTGCGCGGGGCTCCGCA...... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
CTGCGGCACCAGCAGCGTTCC...................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................GACCCGTTTGTTTGTGCGCAG.................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGATAAGATGCTAAACATGC....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GATAAGATGCTAAACATGCGT..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GACCCGTTTGTTTGTGCGCAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................GATACCAGCCGCACCAGT.......................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................TAAACATGCGTGCGCGGGGCTCCGC....... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................ATCAGCGATATCAACCGTAC.............................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................TCTCTCTCTCTCTCTCTCTCT............................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GATGCCGTGGTCGTCGCAAGGTGAATAGTCGCTATCGTCGGCGTGGTCACCATTCACCGTTTGGTGGATTCGGGTAGAGGTGGGGTAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGCCACTACTGGGCAAACAAACACGCGTCTTTAACGACTATTCTACGATTTGTACGCACGCGCCCCGAGGCGTTTACCG
**************************************************.....((..............................(((..(((......)))....)))))************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060658
140_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060670
9_testes_total
 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
..........................................................GTTTGGTTGATTCGGGTA............................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................TGGTGGGTTCGGGTAGAGGTG......................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...ATCGTGGTCGTCGCAAGGTGAAT................................................................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................TTGGTGGATTGGGGTGAAGGT.......................................................................................................................................................... 21 3 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0
............................................................TTGGTGGATTGGGGTGGAGGT.......................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................GTCCCTATCGTCGGCGAGGTC........................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................CGGTTTGGTTGATTCGGGTAAA............................................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................CGGTTTGGTTGATTCGGGTA............................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................TTGGTCGATTGGGGTGGAGGT.......................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................CCGTTTGGTTGATTCGGGCG............................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................TTGGGGTAGATTTGGGGTAGA.................................................................................................................................................. 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................CGGTTTGGTTGATTCGGGTAA.............................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................TTTGGTTGATTCGGGTAAA............................................................................................................................................................. 19 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................AGGTGGGGTAGTCCGATAG........................................................................................................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTCGGGTAGTGGTGGTGTAA................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................AGAGAGAGAGAGAGAGAGA.................................................................................................................. 19 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
.............................................................TGGTGGATTTGAGTGGAGGT.......................................................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................TTCACTGTACGGTGGATTC.................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................AGAGAGAGAGAGAGAGAGAGAGAGA.............................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................AGAGAGAGAGAGAGACAGA.............................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................ACACGGGTAGAGGTGGGAT..................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:5607201-5607435 + dvi_13234 CTACGGCACCAGCAGCGTTCCACT------------------------------------------------TATCAG-----------CGAT---A-------GCAGCCG-----------C--AC-----------------------CAGTGGT-----------------AAGT----------GGCAA------ACCACCTAA--------------------------GCCCATCT-----------------------------CCA-----CCCCATCTCTCTATCTC------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------------------------------------------------------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--------CTC-TCTCTG-------TCTCGGTGAT--------------GACCCGTTTG----------T-TTGTG----------------CGC--------------------------------AGAAATTGCTG-ATAAGATGCTAAACAT--------------------------------------------------------------------------------------------------------GCGTGCGCG-----------GGG-----------C--TC--------CGCAAATGGC
droMoj3 scaffold_6473:16054821-16055070 - CTACAGCGACAGCGGCGTAACACT------------------------------------------------TATCAG-----------TAAC---A-------GCAGTCA-----------G--AA-----------------------CAGCGGT-----------------AAGT----------A-----GTAAATCAATTTAGTTATACT--------------------------------------------------------GTG-----CCCCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------CCCCACCTACC--CTCATGCCAGCGAAT----------TCTACTTTGCACTCGCTCTGTCCCTG---------------------------------------------------------TCGCACTCTATT------GCACATGA------C-GTGTTTCTTTGCT---GACCTGTTTGTTTTCAC---------------------GTTAACAC--------------------------------AGATATTACTG-ATAAGATGTCAAATGT--------------------------------------------------------------------------------------------------------GCGTTCGCG-----------GAT-----------T--CC--------CGCAAATGGC
droGri2 scaffold_15245:13948205-13948452 - CAGCAGCAGCAGCTG------------------CCACT--------------------------------------------------------------------------------------CGATAGTTTTGTCCAAAATTTGAA--CAATGCCAACTAATAAGCTGTATTTTAGCCTACACACATAT----------------ATTGTC-----------TCTCGCTCTCTCTCTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCTCTCTCT--------------------CTCTT------------------TCTCTCTCTC-----------------------------------------------TC----------TCTCTCTCTGTC------TGTCTCTG------TCTG--------------GCTCTATCT-------------CTGTGTGGC--A-TGT----------------------------------------------GT-------------------------ACCATGAAACTGAATATT--------------------------------------------------------------------------GGTCAAACTGGCTAAGCAAGTGGAGCAGAG-----------C--TG--------AGTTAATGGC
droWil2 scf2_1100000004902:11292469-11292679 + ACAGAG--TCAGCAA------------------TTTCATTTCCCAGCAACCGCAGCAC---AGTG------------G-----------GC----------------------ACCAACAACA--ATATG--------------TTTGAAGAACAAA-----------------AG------------------------------------------TCGGTGTCTCACTTTCTCTCTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC------GCT--AGC----------TCATCCTCTTTCTCTCTCTCTC------------------------TCTCTCTC-------------------------------TCTCTCTCTCTCT--------GTCTCAGTCA-------A-----------------------------------------------ATG--ACTGA-GTTGTTGCCGCAGTTGTTGTTGA---------------------------------AAATTTGTGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------TATGC
dp5 XL_group1e:6864677-6864864 - CAGCAGCAGCAGCAG------------------CATCGGTG---------------------GCA---------GCGG-----------CAAT---------TAATAATAG-----------C--AA-----------------------------C-----------------AG-------------------------GCTCTCATTCTCTGCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCTTCCGT--CCTG----------GCCTCTCTCTTTCGCTCTCTGTCTGCCCGTCTCCCCGTCTCCTTTCCACTG-------------------------------GAGCGT--------------------------------------TGGG--------------GTCTGGCGT---------------------------CTGTTGTCGC--------------------------------ATAAATTGCTG-TTGTC------AT---T-----------------------------------------------------------------------------------------------------------------------------------------A--C--------------CCGCA
droPer2 scaffold_20:1529736-1529988 - TGGTGGTACGAGTAG------------------GCATCC---------------------TTGCAA------ATGCAATCCATCTTTGATGATAAAA-------GCAAGCA-----------G---------------------------------A-----------------AAGA----------GGCAAAATGTAATAATTTAAGCATA--------------------------------TCCAAATGCAA--------TCGCATGCAC-----AC-----ACTCCATCTC--------------------------------------------------------------------------------------------------------------------------------------------CATC------GCT--ATC----------TCCATCTCCTTCTCCCTCT------------CCTTC----------TCTC-----------------------------------------------TCGCTCTCTGTC------TGTCTC--TGTCGCTGAC--------------TACAAAATGG----------C-ATCCG----------------AGA--------------------------------AGGCATCGCAGTATAAGGCGATAA--------------------------------------------------------------------------------------------------------------GTGCACC-----------AGG-----------C--GC--------CGTAGC--TG
droAna3 scaffold_13340:7371469-7371716 - CAACGGCAACGGCAG------------------CAACA-----------------------TGCAA------TGGCAA-----------CAAT---T-------CCTGCTG-----------CCCAGTCGCATTGTCCAAAATGCTTA--AGGTTCGGGCCGGC-----------------------------------------------------AT----GCAGCGTTCTT-----------------------------------------------TCTTTTCCTCGTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTGAAT--TTTTT------------------------C--------------------------------------------------------------------------------------G------CCTT--------------CTTTTATTT-------------TTTTGCGAT--T-TTT----------------------------------------------TT-------------------------TTTGTTGTGCTGAATTTTTTTATGTACACGCCAAGCCAAACAGCTTGAATGGAAGTAATGATGCTGGCCGTACGTCGCC-------------------------------------------------------------------GGCGAAAAGC
droBip1 scf7180000396709:95115-95319 - CAACAGCAGCAGCAG------------------CAGGC-----------------------GGCA-------GCCCAG-----------CAGC---A-------ACACCTG-----------C--CC-----------------------CAG-------------------------CCGGCCCATCTGCAG---------------TCGT-----------------CCCAGGCCCAGTCGCACCTGACCCAGTTGGCGCAATACTATCCAGCCTTCCCCCAGCCCATCGCCTCCC-------AGTACACGGCCTGTATGCAGCAGCAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAGCAG---------------------------------------------------CAACAGGCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------C--AA--------CAGCAACAGC
droKik1 scf7180000302230:690772-690936 + TCTCTATTCCATCCC------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTCT--CTCC----------CTCTCTTTCTTTCTCTCCCTCTCTCCCTCTCTCCCTC---------------------------------------------------------TCTCTCTCTGTC------TGGCGCGG------CGAG--------------GCTCCTCCT-------------TTTTA--GGGGA-TTT----------------------------------------------TTATG-------TCCTTGA---TAT-----------------------------------------------------------------------------------------------------GCGTGGGCG-----------GGGCCAGGACCAGGC--TC--------CGCC-CACCA
droFic1 scf7180000453929:854048-854298 + CTACCGAATGACCAC------------------CACCC-----------------------AGCA------------G-----------CC----------------------ACAAAGACCC--ATAGG--------------------------T-----------------GTAA----------------GTTGAAAAATCCAAT-GTGCATTCACTAAGCAGTTCCACTGTTTAAATTCT----------------------------------------ATTTTTGTTCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------C-------------------------------GATA--TCTACCT--------GTAAATATCA-------ACATGGCTTT--------------GAATTAATCT----------T-CCCTG--ATAAC-CTTTTAT-TTTATAAA-------------------------------------------------------TATTTTTACCGAACATAGATGCT--------------------------------------------------------------------------CAACAATACGCACGTGATTGTGCAACAGCA-----------ACCCGTGTTGATCC----AGGCC
droEle1 scf7180000490564:172172-172434 - CATCTGCAACAGCAG------------------CAACATCAT--------------GATGTCACA---------GCAG-----------CAAT---ATCAAGCCACAGCAGCAACATCGAGCT--GTAAG--------------------------G-----------GCCACCTAAAACCACCCACCTGC-----------------------ATT-----------------------------------------------------TTAC-----CAACAGCTCCCCCTCCCCCTCCCCCCAAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------ACTC------------------------CCGCCGTCCC----------------------------------------------------CT--------GGCAACGTAA-------G-------TTGTCTAGTCGGCGACGTT---TTAAATTAAAAATTT-CCATGCAAT--TTCATGTTACGGTAGCCGACCTTACAGTCTGGC------------ATGCACTGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGT--CCAATCAAT
droRho1 scf7180000763611:53653-53926 - CAACAGGTGCAGCAA------------------CATCAACAA-CAGCA--------GCAGCAGCAGTTGCAGTTGC--------------------A-------ACAGCAG-----------C--AGCAA--------------------------C-----------------ATAG----------------CTCAACCAATCTGATTGTGGGCCATCGGGGTAGCTCCTCTGTCCAAGGACGCCTGAGCTCTG--------CTGTATTTAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAACTTT----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCTACGCAAC-----------------AGCAATTGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCCCAGCAGCAGC
droBia1 scf7180000301760:5022758-5022983 + GTGCAGCACCAACAG------------------CAGCAA---------------------TTGCAG------TTGCAG-----------CAAC---A--------------------------------G--------------------------C-----------------ACAG----------------CTCAAACAACCTTATTGTGGGTCATCGGGGCAGCTCCTCTGTCCAGGGCCGCCTCAGCTCTG--------CCGTATTCAG-----TCCCATATCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACAA-------ACTCGGTGAT--------------GACCAACTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCACCTTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC
droTak1 scf7180000414432:76068-76342 - CAACAGCAACAGCAG------------------CAGCAACA---------------A---------------TAGCAA-----------CAGTAACA----------GCAA-----------C--AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAACAGCAGCAACACCACCAAAGGCGGCAATAAAAAGTTTGCTTTGTGTGTGTTGTCGGTGTCGGTGACATTCTTGCCCCAATCTCCTGCCCCTCC----------------------------------------------------------------------------------TACTCCCCCTCCCCCTCCTCCTGCTACTGCCACGCCCCTTCCGC--------CCC-CCCTTA-------AATCGGTGTC--------------GCCCCGTTGT----------TGTCCTG--TTGTT-GTTGTCGCCATCGTCATCGTCTG------ACGCCTGTGGGCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATT
droEug1 scf7180000409032:909421-909665 - GTGCAGCAGCAGCAGCAAGCGCAACACCAGCAGCAGCAGCA---------------ACAGTTGCAG------TTGCAG-----------CAAC---A----------GCAG-----------C--AGCAG--------------------------C-----------------ATAG----------------CTCGAACAATTTGATTGTGGGCCATCGGGGCAGCTCTTCTGTTCAAGGACGCCTGAGCTCTG--------CTGTATTTAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTGCA-------------------------------GAGTTCCTTTGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAACTTT----------T-CTATG--ATGGA-CTCGCCGCCACAGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:9062443-9062674 + CAACAGCAGCAGCAA------------------AAG------------------------CTGCAG------TTGCAG-----------CAAC---A-------ACAGCAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCAAACAATTTGATTGTCGGCCATCGTGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTTAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GAGCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC
droSim2 x:8608478-8608717 + GTGCAGCACCAACAG------------------CAGCAGCA---------------AAAGCTTCAG------TTGCAG-----------CAAC---A-------ACAGCAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCGAACAATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTCAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droSec2 scaffold_34:421937-422126 + CATCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA----------------CTCGAACAATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTCAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC
droYak3 X:12254191-12254444 - GTGCAACACCAACAG------------------CAGCAGCA---------------GAAGTTGCAG------TTGCAG-----------CAAC---A-------GCAGCAGCAA--------C--ATCAG--------------------------C-----------------ACAG----------------CTCGAACAATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTCAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGCAGC-----------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATTGCC
droEre2 scaffold_4770:9119295-9119541 - CAGCAGCAGCAGCAA------------------CAT--------------------------GCAA------TGGCAA-----------CAAT---T-------CCTGCTG-----------CCCAGTCG--------------------------C-----------------ATTG----------------TCCAAAATGCTCGAGGTTGGGGCAT----GCAGCGTTCTTTTTCGCTGGCCTTTTTTATTTT--------CCGT----------------ATACGTTGCCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTG-------------------------------CATT--TTTTTAT--------GTACATGCCA-------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAACAGCTTGAATGGAAGTAATGATGCTGGCCGAACGTCGCCGAAACGAAGTCTTGAGA--AAGGCGCGCAGT-----------T-----------G--GG--------CTGCATTTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTACGGCACCAGCAGCGTTCCACT------------------------------------------------TATCAG-----------CGAT---A-------GCAGCCG-----------C--AC-----------------------CAGTGGT-----------------AAGT----------GGCAA------ACCACCTAA--------------------------GCCCATCT-----------------------------CCA-----CCCCATCTCTCTATCTC------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------------------------------------------------------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--------CTC-TCTCTG-------TCTCGGTGAT--------------GACCCGTTTG----------T-TTGTG----------------CGC--------------------------------AGAAATTGCTG-ATAAGATGCTAAACAT--------------------------------------------------------------------------------------------------------GCGTGCGCG-----------GGG-----------C--TC--------CGCAAATGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------------------------------------------------------------------------------------GCGTGCGCG-----------GGG-----------C--TC--------CGCA......2111.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGTTTG----------T-TTGTG----------------CGC--------------------------------AG...........................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-ATAAGATGCTAAACAT--------------------------------------------------------------------------------------------------------GC.......................................................2011.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ATAAGATGCTAAACAT--------------------------------------------------------------------------------------------------------GCGT.....................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGTTTG----------T-TTGTG----------------CGC--------------------------------AGT..........................................................................................................................................................................................2211.001000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACAT--------------------------------------------------------------------------------------------------------GCGTGCGCG-----------GGG-----------C--TC--------CGC.......2511.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTCTCTCTCT..............................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTACAGCGACAGCGGCGTAACACT------------------------------------------------TATCAG-----------TAAC---A-------GCAGTCA-----------G--AA-----------------------CAGCGGT-----------------AAGT----------A-----GTAAATCAATTTAGTTATACT--------------------------------------------------------GTG-----CCCCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------CCCCACCTACC--CTCATGCCAGCGAAT----------TCTACTTTGCACTCGCTCTGTCCCTG---------------------------------------------------------TCGCACTCTATT------GCACATGA------C-GTGTTTCTTTGCT---GACCTGTTTGTTTTCAC---------------------GTTAACAC--------------------------------AGATATTACTG-ATAAGATGTCAAATGT--------------------------------------------------------------------------------------------------------GCGTTCGCG-----------GAT-----------T--CC--------CGCAAATGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCG-----------GAT-----------T--CC--------CGCAAATG..2111.001100000
............................................................................................C---A-------GCAGTCA-----------G--AA-----------------------CAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000100
.......GACAGCGGCGTAACACT------------------------------------------------TATCAG-----------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTACC--CTCATGCCAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................GCAGTCA-----------G--AA-----------------------CAGCGGT-----------------AAGT----------A-----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droGri2
CAGCAGCAGCAGCTG------------------CCACT--------------------------------------------------------------------------------------CGATAGTTTTGTCCAAAATTTGAA--CAATGCCAACTAATAAGCTGTATTTTAGCCTACACACATAT----------------ATTGTC-----------TCTCGCTCTCTCTCTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTCTCTCTCT--------------------CTCTT------------------TCTCTCTCTC-----------------------------------------------TC----------TCTCTCTCTGTC------TGTCTCTG------TCTG--------------GCTCTATCT-------------CTGTGTGGC--A-TGT----------------------------------------------GT-------------------------ACCATGAAACTGAATATT--------------------------------------------------------------------------GGTCAAACTGGCTAAGCAAGTGGAGCAGAG-----------C--TG--------AGTTAATGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACAGAG--TCAGCAA------------------TTTCATTTCCCAGCAACCGCAGCAC---AGTG------------G-----------GC----------------------ACCAACAACA--ATATG--------------TTTGAAGAACAAA-----------------AG------------------------------------------TCGGTGTCTCACTTTCTCTCTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC------GCT--AGC----------TCATCCTCTTTCTCTCTCTCTC------------------------TCTCTCTC-------------------------------TCTCTCTCTCTCT--------GTCTCAGTCA-------A-----------------------------------------------ATG--ACTGA-GTTGTTGCCGCAGTTGTTGTTGA---------------------------------AAATTTGTGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------TATGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CAGCAGCAGCAGCAG------------------CATCGGTG---------------------GCA---------GCGG-----------CAAT---------TAATAATAG-----------C--AA-----------------------------C-----------------AG-------------------------GCTCTCATTCTCTGCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCTTCCGT--CCTG----------GCCTCTCTCTTTCGCTCTCTGTCTGCCCGTCTCCCCGTCTCCTTTCCACTG-------------------------------GAGCGT--------------------------------------TGGG--------------GTCTGGCGT---------------------------CTGTTGTCGC--------------------------------ATAAATTGCTG-TTGTC------AT---T-----------------------------------------------------------------------------------------------------------------------------------------A--C--------------CCGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........GCAG------------------CATCGGTG---------------------GCA---------GCGG-----------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2019.0090100017000
...........GCAG------------------CATCGGTG---------------------GCA---------GCGG-----------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
..........AGCAG------------------CATCGGTG---------------------GCA---------GCGG-----------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........GCAG------------------CATCGGTG---------------------GCA---------GCGG-----------CG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.5020200000000
...........GCAG------------------CATCGGTG---------------------GCA---------GCGG-----------TT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710100000000
droPer2
TGGTGGTACGAGTAG------------------GCATCC---------------------TTGCAA------ATGCAATCCATCTTTGATGATAAAA-------GCAAGCA-----------G---------------------------------A-----------------AAGA----------GGCAAAATGTAATAATTTAAGCATA--------------------------------TCCAAATGCAA--------TCGCATGCAC-----AC-----ACTCCATCTC--------------------------------------------------------------------------------------------------------------------------------------------CATC------GCT--ATC----------TCCATCTCCTTCTCCCTCT------------CCTTC----------TCTC-----------------------------------------------TCGCTCTCTGTC------TGTCTC--TGTCGCTGAC--------------TACAAAATGG----------C-ATCCG----------------AGA--------------------------------AGGCATCGCAGTATAAGGCGATAA--------------------------------------------------------------------------------------------------------------GTGCACC-----------AGG-----------C--GC--------CGTAGC--TGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CAACGGCAACGGCAG------------------CAACA-----------------------TGCAA------TGGCAA-----------CAAT---T-------CCTGCTG-----------CCCAGTCGCATTGTCCAAAATGCTTA--AGGTTCGGGCCGGC-----------------------------------------------------AT----GCAGCGTTCTT-----------------------------------------------TCTTTTCCTCGTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTGAAT--TTTTT------------------------C--------------------------------------------------------------------------------------G------CCTT--------------CTTTTATTT-------------TTTTGCGAT--T-TTT----------------------------------------------TT-------------------------TTTGTTGTGCTGAATTTTTTTATGTACACGCCAAGCCAAACAGCTTGAATGGAAGTAATGATGCTGGCCGTACGTCGCC-------------------------------------------------------------------GGCGAAAAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CAACAGCAGCAGCAG------------------CAGGC-----------------------GGCA-------GCCCAG-----------CAGC---A-------ACACCTG-----------C--CC-----------------------CAG-------------------------CCGGCCCATCTGCAG---------------TCGT-----------------CCCAGGCCCAGTCGCACCTGACCCAGTTGGCGCAATACTATCCAGCCTTCCCCCAGCCCATCGCCTCCC-------AGTACACGGCCTGTATGCAGCAGCAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAGCAG---------------------------------------------------CAACAGGCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------C--AA--------CAGCAACAGCSizeHit CountTotal NormTotal
No Reads
droKik1
TCTCTATTCCATCCC------------------TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCGCTCTCT--CTCC----------CTCTCTTTCTTTCTCTCCCTCTCTCCCTCTCTCCCTC---------------------------------------------------------TCTCTCTCTGTC------TGGCGCGG------CGAG--------------GCTCCTCCT-------------TTTTA--GGGGA-TTT----------------------------------------------TTATG-------TCCTTGA---TAT-----------------------------------------------------------------------------------------------------GCGTGGGCG-----------GGGCCAGGACCAGGC--TC--------CGCC-CACCASizeHit CountTotal NormTotal
No Reads
droFic1
CTACCGAATGACCAC------------------CACCC-----------------------AGCA------------G-----------CC----------------------ACAAAGACCC--ATAGG--------------------------T-----------------GTAA----------------GTTGAAAAATCCAAT-GTGCATTCACTAAGCAGTTCCACTGTTTAAATTCT----------------------------------------ATTTTTGTTCTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------C-------------------------------GATA--TCTACCT--------GTAAATATCA-------ACATGGCTTT--------------GAATTAATCT----------T-CCCTG--ATAAC-CTTTTAT-TTTATAAA-------------------------------------------------------TATTTTTACCGAACATAGATGCT--------------------------------------------------------------------------CAACAATACGCACGTGATTGTGCAACAGCA-----------ACCCGTGTTGATCC----AGGCCSizeHit CountTotal NormTotal
No Reads
droEle1
CATCTGCAACAGCAG------------------CAACATCAT--------------GATGTCACA---------GCAG-----------CAAT---ATCAAGCCACAGCAGCAACATCGAGCT--GTAAG--------------------------G-----------GCCACCTAAAACCACCCACCTGC-----------------------ATT-----------------------------------------------------TTAC-----CAACAGCTCCCCCTCCCCCTCCCCCCAAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------ACTC------------------------CCGCCGTCCC----------------------------------------------------CT--------GGCAACGTAA-------G-------TTGTCTAGTCGGCGACGTT---TTAAATTAAAAATTT-CCATGCAAT--TTCATGTTACGGTAGCCGACCTTACAGTCTGGC------------ATGCACTGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGT--CCAATCAATSizeHit CountTotal NormTotal
No Reads
droRho1
CAACAGGTGCAGCAA------------------CATCAACAA-CAGCA--------GCAGCAGCAGTTGCAGTTGC--------------------A-------ACAGCAG-----------C--AGCAA--------------------------C-----------------ATAG----------------CTCAACCAATCTGATTGTGGGCCATCGGGGTAGCTCCTCTGTCCAAGGACGCCTGAGCTCTG--------CTGTATTTAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAACTTT----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCTACGCAAC-----------------AGCAATTGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGCCCAGCAGCAGCSizeHit CountTotal NormTotal
No Reads
droBia1
GTGCAGCACCAACAG------------------CAGCAA---------------------TTGCAG------TTGCAG-----------CAAC---A--------------------------------G--------------------------C-----------------ACAG----------------CTCAAACAACCTTATTGTGGGTCATCGGGGCAGCTCCTCTGTCCAGGGCCGCCTCAGCTCTG--------CCGTATTCAG-----TCCCATATCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACAA-------ACTCGGTGAT--------------GACCAACTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCACCTTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCSizeHit CountTotal NormTotal
No Reads
droTak1
CAACAGCAACAGCAG------------------CAGCAACA---------------A---------------TAGCAA-----------CAGTAACA----------GCAA-----------C--AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAACAGCAGCAACACCACCAAAGGCGGCAATAAAAAGTTTGCTTTGTGTGTGTTGTCGGTGTCGGTGACATTCTTGCCCCAATCTCCTGCCCCTCC----------------------------------------------------------------------------------TACTCCCCCTCCCCCTCCTCCTGCTACTGCCACGCCCCTTCCGC--------CCC-CCCTTA-------AATCGGTGTC--------------GCCCCGTTGT----------TGTCCTG--TTGTT-GTTGTCGCCATCGTCATCGTCTG------ACGCCTGTGGGCACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTSizeHit CountTotal NormTotal
No Reads
droEug1
GTGCAGCAGCAGCAGCAAGCGCAACACCAGCAGCAGCAGCA---------------ACAGTTGCAG------TTGCAG-----------CAAC---A----------GCAG-----------C--AGCAG--------------------------C-----------------ATAG----------------CTCGAACAATTTGATTGTGGGCCATCGGGGCAGCTCTTCTGTTCAAGGACGCCTGAGCTCTG--------CTGTATTTAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTGCA-------------------------------GAGTTCCTTTGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAACTTT----------T-CTATG--ATGGA-CTCGCCGCCACAGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CAACAGCAGCAGCAA------------------AAG------------------------CTGCAG------TTGCAG-----------CAAC---A-------ACAGCAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCAAACAATTTGATTGTCGGCCATCGTGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTTAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GAGCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................TTTGATTGTCGGCCATCGTGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25124.00240000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000100000000000100000000000000000000000000000000000000000000000000100000000000200020002210000000000000000000000000000000000000000000000000000000000001000000202000000310000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCG................................................................................................................................................................................................................................................................................................................24115.001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015
...........................................................................................................................................................................................................................................TCCAAGGGCGCCTGACCTCAG--------CTGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT--------------GAGCAATTTC----------T-CCATG--ATGGA-C.......................................................................................................................................................................................................................................2619.0090000000000000000000000010000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000002000000
..............................................................................................................................................................................................................................................AAGGGCGCCTGACCTCAG--------CTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000701000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGA...............................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTGATTGTCGGCCATCGTGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000030000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTTC----------T-CCATG--ATGGA-CTCGC...................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------ACTCGGTGAT--------------GAGCAATTTC----------T-CCAT.................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AAGGGCGCCTGACCTCAG--------CTGTATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCCTCTGTCCAAGGGCGCCTGACCTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGC.................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT--------------GAGCAATTTC----------T-CCATG--ATGGA-C.......................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................AGCTCCTCTGTCCAAGGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TCCAAGGGCGCCTGACCTCAG--------CTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGACACCA-------ACTCGGTGAT--------------GAGCA......................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AATTTGATTGTCGGCCATCGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................TCTGTCCAAGGGCGCCTGACCTCAG--------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------GAGCAATTTC----------T-CCATG--ATGGA-CTCGCC..................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCCTCTGTCCAAGGGCGCCTGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TTAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC............................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTTGATTGTCGGCCATCGTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
.................................................................................................................................................................................A----------------CTCAAACAATTTGATTGTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC----------T-CCATG--ATGGA-CTCGCCGC................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------GAGTTCCTTCGAT--------GGCGACAC............................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT--------------GAGCAATTTC----------T-CCATG--ATGGA-........................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAT--------------GAGCAATTTC----------T-CCATG--ATG...........................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATG--ATGGA-CTCGCCGCCGCAG...........................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CAAGGGCGCCTGACCTCAG--------CTGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000101000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTCGAT--------GGCGACACCA-------A..................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------ACTCGGTGAT--------------GAGCAATTTC----------T-CC...................................................................................................................................................................................................................................................2412.0020000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CAGCAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AGCAGCAA------------------AAG------------------------CTGCAG------TTGCAG-----------CAAC---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TGGCAGCTCCTCTGTCCAAGGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AGGGCGCCTGACCTCAG--------CTGTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................................CTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAG......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GCAG------TTGCAG-----------CAAC---A-------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CAAC---A-------ACAGCAG-----------C--ATCAA--------------------------C-----------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AC---A-------ACAGCAG-----------C--ATCAA--------------------------C-----------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AG-----------CAAC---A-------ACAGCAG-----------C--ATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTGCAGCACCAACAG------------------CAGCAGCA---------------AAAGCTTCAG------TTGCAG-----------CAAC---A-------ACAGCAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCGAACAATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTCAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................TTTGATTGTCGGCCATCGGGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000003000000000
........................................................................................................................................................................................................CAATTTGATTGTCGGCCATCGGGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CCATG--ATGGA-CTCGCCGCCGCAGCC.........................................................................................................................................................................................................................2611.00100000000000010000
............................................................................................................CAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCGAACAATTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-------------------------------GAGTTCCTTCGAT--------GGCGAC..............................................................................................................................................................................................................................................................................................................2311.00100000000001000000
................................................................................................A-------ACAGCAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.......................................................................................................................................................................................................................................TCTGTCCAAGGGCGCCTGACCTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.............................................................................................................................ATCAA--------------------------C-----------------ACAA----------------CTCGAACAATTTGATTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTTC----------T-CCATG--ATGGA-CTCGCC..................................................................................................................................................................................................................................2411.00110000000000000000
....................................................................................................................................................................................................................CGGCCATCGGGGCAGCTCCTCTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------ACTCGGTGAT--------------GACCAATTTC----------T-CC...................................................................................................................................................................................................................................................2411.00100000010000000000
....................................................................................................................................................................................................................................................................................................CCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCC..................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
........................................................................................................ACAGCAG-----------C--ATCAA--------------------------C-----------------ACAA----------------CTCGAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
.....................................................................................................................................................................................................GAACAATTTGATTGTCGGCCATCGGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
droSec2
CATCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA----------------CTCGAACAATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTCAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................CCAAGGGCGCCTGACCTCAG--------CT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-------------------------------GAGTTCCTTCGAT--------GGC.................................................................................................................................................................................................................................................................................................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTGAT--------------GACCAATTTC----------.......................................................................................................................................................................................................................................................2011.0011000
droYak3
GTGCAACACCAACAG------------------CAGCAGCA---------------GAAGTTGCAG------TTGCAG-----------CAAC---A-------GCAGCAGCAA--------C--ATCAG--------------------------C-----------------ACAG----------------CTCGAACAATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGCGCCTGACCTCAG--------CTGTATTCAG-----CCCCATCTCGCTGCCCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTGCA-------------------------------GAGTTCCTTCGAT--------GGCGACACCA-------ACTCGGTGAT--------------GACCAATTTC----------T-CCATG--ATGGA-CTCGCCGCCGCAGCCATCATCGCAGC-----------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAATTGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................CAGCTCCTCTGTCCAAGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................................................................................................................................................AATTTGATTGTCGGCCATCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................GGGGCAGCTCCTCTGTCCAAGGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.................................................................................................................................................................................................................TGTCGGCCATCGGGGCAGCTCCTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000
.........................................................................................................................................................................................................AATTTGATTGTCGGCCATCGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
.........................................................................................................................................................................................................AATTTGATTGTCGGCCATCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
............................................................................................................CAGCAA--------C--ATCAG--------------------------C-----------------ACAG----------------CTCGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.................................................................................................................................G--------------------------C-----------------ACAG----------------CTCGAACAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................AAC---A-------GCAGCAGCAA--------C--ATCAG--------------------------C-----------------ACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...CAACACCAACAG------------------CAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.13101000000000
...........................................................................................AC---A-------GCAGCAGCAA--------C--ATCAG--------------------------C-----------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCTTCGAT--------GGCT................................................................................................................................................................................................................................................................................................................17160.06100000000001
droEre2
CAGCAGCAGCAGCAA------------------CAT--------------------------GCAA------TGGCAA-----------CAAT---T-------CCTGCTG-----------CCCAGTCG--------------------------C-----------------ATTG----------------TCCAAAATGCTCGAGGTTGGGGCAT----GCAGCGTTCTTTTTCGCTGGCCTTTTTTATTTT--------CCGT----------------ATACGTTGCCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTG-------------------------------CATT--TTTTTAT--------GTACATGCCA-------AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAACAGCTTGAATGGAAGTAATGATGCTGGCCGAACGTCGCCGAAACGAAGTCTTGAGA--AAGGCGCGCAGT-----------T-----------G--GG--------CTGCATTTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/16/2015 at 09:50 PM