ID:

dvi_13044

 Coordinate:

scaffold_12970:3203352-3203502 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.8 -20.8 -20.7

Flybase annnotation

exon [dvir_GLEANR_3793:3]; CDS [Dvir\GJ18980-cds]; intron [Dvir\GJ18980-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12855:3927307-3927324 -
  2. scaffold_12875:15285055-15285072 +
  3. scaffold_12928:780045-780062 -
  4. scaffold_12963:9365860-9365877 -
  5. dvi_13044  scaffold_12970:3203436-3203453 -
  6. scaffold_12970:11326456-11326473 +
  7. scaffold_13047:8169899-8169916 -
  8. scaffold_13049:20363446-20363463 -
  9. scaffold_13052:1922469-1922486 +
  10. scaffold_13177:366-383 +
  11. scaffold_13215:131-148 +
  12. scaffold_13215:6369-6386 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTTTACCAGCAACATCATCATCAGCAGCTGTTGTCGAGCAGCTTCATGCGGTAAGTGTAAACTATTTCAACTCACCTGGGCCATTGACGTCATGTGTGTGGCTTTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGCCCGTGTCCGCGTCCGTTTCTGTGTCTGTGTCTGCGTCTGTGTGTGCTGTTGCCAAAGCCAAAAACTCGGGATGTGGTTGCCAGCGGGGATTGGGTGGACGAGCAGCGACAGA
**************************************************..........(((((....((.(((..(((((((..((.....))..))))))).))).))....))).))...((.((((....)))).))....((((..(((................)))..))))((.(((........)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060667
160_females_carcasses_total
 SRR060678
9x140_testes_total
 V053
head
 M028
head
 M047
female body
 V047
embryo
 V116
male body		 SRR060672
9x160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060666
160_males_carcasses_total
 SRR060673
9_ovaries_total
..............................TTGTCGAGCAGCTTCATGCGG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CATCATCAGCAGCTGTTGTCGAGC.................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TTACCAGCAACATCATCATCA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AGCTTAAGCCGGTAAGTGTA................................................................................................................................................................................................ 20 3 7 0.29 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
.......................GCAGCTGTTGTCGAGCAA.................................................................................................................................................................................................................. 18 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAAAAACTCGTGATGTTGTTG................................. 22 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........GCAACATCATCATCAGCAGC............................................................................................................................................................................................................................... 20 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GAATGGTTGGACGAGCACC...... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........CAACATCATCATCAGCAGC............................................................................................................................................................................................................................... 19 0 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................GGCTTTGTGTGTGTGTGT...................................................................................................................................... 18 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................AGCTGGGATTGAGTGGACGT........... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................GGTGTATGAGTGGGCCCGTG........................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................CCGTTACTTTGTCGGTGTCT................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................CATCAGTTTCTGTGTCTGTGTA................................................................................. 22 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGGCTTTGTGTGTATGTG....................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................CGTGTGTGCCCGTGTCCGTGT.................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................AACCTTAGCCATTGACGT................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GAAATGGTCGTTGTAGTAGTAGTCGTCGACAACAGCTCGTCGAAGTACGCCATTCACATTTGATAAAGTTGAGTGGACCCGGTAACTGCAGTACACACACCGAAACACACACACACACACACACACACATACACACACGGGCACAGGCGCAGGCAAAGACACAGACACAGACGCAGACACACACGACAACGGTTTCGGTTTTTGAGCCCTACACCAACGGTCGCCCCTAACCCACCTGCTCGTCGCTGTCT
**************************************************..........(((((....((.(((..(((((((..((.....))..))))))).))).))....))).))...((.((((....)))).))....((((..(((................)))..))))((.(((........)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M028
head
 V047
embryo
 V053
head
 M027
male body		 M061
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060659
Argentina_testes_total
.........................................................................TGGACCGGATAACTGCACTAC............................................................................................................................................................. 21 3 2 30.50 61 22 14 12 3 3 3 1 2 0 1 0 0 0
.........................................................................TGGACCGGATAACTGCACTA.............................................................................................................................................................. 20 3 3 13.33 40 17 10 4 2 4 1 2 0 0 0 0 0 0
......................................................................GTGTGGACCGGATAACTGCA................................................................................................................................................................. 20 3 3 8.00 24 6 6 0 10 2 0 0 0 0 0 0 0 0
........................................................................GTGGACCGGATAACTGCACTA.............................................................................................................................................................. 21 3 2 6.00 12 4 1 1 1 1 2 0 0 0 0 1 1 0
......................................................................GTGTGGACCGGATAACTGC.................................................................................................................................................................. 19 3 12 3.33 40 11 11 0 10 6 0 2 0 0 0 0 0 0
..........................................................................GGACCGGATAACTGCACTAC............................................................................................................................................................. 20 3 5 3.00 15 8 5 1 0 0 0 1 0 0 0 0 0 0
........................................................................GTGGACCGGATAACTGCACTAC............................................................................................................................................................. 22 3 2 2.00 4 1 1 0 0 1 1 0 0 0 0 0 0 0
..........................................................................GGACCGGATAACTGCACTA.............................................................................................................................................................. 19 3 11 1.55 17 7 6 3 1 0 0 0 0 0 0 0 0 0
........................................................................GTGGACCGGATAACTGCA................................................................................................................................................................. 18 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
......GTCGTTGTAGTAGTAGTCGTCGA.............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................CAGACGCAGACACACACGAC................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................TGGACCGGATAACTGCACT............................................................................................................................................................... 19 3 10 0.80 8 5 2 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................AACCCACCCGCTCGTCGCTG... 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................GTGGACCGGATAACTGCACT............................................................................................................................................................... 20 3 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CACAGACGCAGACACACAC................................................................... 19 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................CACTCACGGGCACAGGCT...................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................GCGTGGACCGGATAACTGC.................................................................................................................................................................. 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGGGGACCCGATAACTGCA................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................GTGGACCAGATAACTGCAC................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....TGGTCGTTATAGTAATAG..................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:3203302-3203552 - dvi_13044 C-TTTACCAGCAACATC-ATCATCAGCA-----GCTGTT-----------GTCGA---GCAGCTTCATGC----G------------------------------------GT-AAGTGTAAACT-ATTTC------------A----------------------------ACTCACCTGGGCC---ATTGAC-------------GTCA----------------------------------------------------------TGTG--T------GTGGCTT--TGTGTGTG----------------T--GTG------------------------TGTGTG------------------TGTGTGTATGTGTGTGCCCGTGTCCGCGT-----------------------------------------CCGTTTCTGTGTCTGTGTCTGC-------------------G----TCTG------TGTGTGCTGTTGCCAAAGCCAAAAAC--------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------CGGG--ATGTGGT--TGCCAGCGGGGATTGGGTGGACGAGCAGCGACAGA----------------------------
droMoj3 scaffold_6473:4063198-4063438 - C-ATCAACAGCAACATC-ATCATCAGCA-----GCTGCT-----------GTCGA---GCAGCTTTATGC----G------------------------------------GT-AAGTGTAAACT-ATTTC------------A----------------------------ACTCACCTGGGCC---ATTGAC-------------GTCAGCGTGTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAGCCAAAAACCGGGCATTTCAAGTGTGTGTGTGTGTGTGTGTGGAGGGGGGAGGGGGGCAATCCCCCT--------------------------------------------------------------------------CGGTACAGCATGTGAGTGCGAGGAGCTGGGGGATTCGAGCTTGGGGTG----GGATACCGGGCCATGGG-----------------------------------------------------------------------------CGGA----------------------------
droGri2 scaffold_15081:3942390-3942604 + C-ATTAATATCAACAAGCAACAGTGGCG-----C----------------------------------------C----------GAAAAGTATGTGTTAC-----------------ATTTGTA-AGTAGGAGGACACATGT------------------------------GT---ATATGAGTGTAGTTATGT-------------AAATGTG-------------------------------------------------------TG--T------GTGTGTG--TGTGTGTG----------------T--GTG------------------------TGTGTGTGTGTGTGTGT------------GTG------TGTGTGTGTGTGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGTGTGTGAGCAAGCAAAAGGCAGCAAGT-------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------GGG---------------------------
droWil2 scf2_1100000004822:717218-717373 - A-TCAACACAGGAT-----------GTTTTTGCGCTCA--------------------------TTATGC----G------------------------------------GC-AGCTGTATT-------C------------A----------------------------C--------------CACGTGTGT----------------------------------------------------------------------------GCGTGT----GT----GT--GTGTGTG--------TG--------------------TGTGTGT------GTGTGTGTGT----------------------GTG----------------------TG--TGTGTGTGT------GTG-----------TGTGTGTGTGTGTGTGTGTCTGTGTCTGT-------------------G----T------CTATGTCT-------------------------------------------------------------------------------------------------------TTT--GT--------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------------C----------------------------
dp5 XL_group1a:2069610-2069795 + C-TATATCAATGCT-----------TTCT-----------------------------------------------------------------------------------------------------------------------------------------------------CTGTGTC---T---------------------------------------------------------------------------------------------------------------CTGACTG------TGTGT--GTGTGTGTGTGT----------GTGTGTGTGTG----------------TGTGTGTG------------------------TGT--GTGTGGTGGTGTGTTGTT--------T------GT------TTGTG------CGC-------------------G----T--------------------------------------------------------------------------------------------------------GTTTATATTT--GTGT--GG--------------------------------------------------------------------------------------------------------------TG-------------CTCCTTCCGGTGAAAAATTGACATATTTGGTGCTGCCAACTGGAATC--GTCGACTGCCAGCAACTC-G---------------------------
droPer2 scaffold_4:6832494-6832683 - T-TTA-CCATT----------TGCCATG-----AT----GAGCAGCCAGCAGCCAGCAGCAGTTGCAG-----GGA------------------------------------G-AAATGTAGGAA-AGCTT------------A----------------------------ACCCTACTCGCAC---ATTCAT-------------TCGAG----------------------AACGCACACAGGGG-TCCC--------CC-------------CT--------------GTCTGTG----------------T--GTG--TG----TGT------------------G------TGTGT------------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTATCCACGTTGTTTGTTTGTTTGTTTGTTT--GTTT--G-------------------------------------------------------------------------------------------------------------TTTG-------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13334:1360048-1360198 - T-GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--T------GTGTATG--TGTGTGTG----------------T--------------------------GTGTGTGTGTGTGTGTGTGT------------G----------------------------T--GTGTGTTGGTGTGTTAGCTGG-TGTGT------C----------------TATGT-------------------GTTAGT--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGG--GTTA----------------------------------------CCTGTAGAAGA--------------------------------------CCGT----------------TAACTAAGCACACG--------------------GC--AAATGTT--TGCCAGCCGGGA---------------------------------------------------
droBip1 scf7180000396543:156401-156520 - C-CTCAGTCGCAGCACC-AGCACCAGCA-----GCCGTC-----------AG--T---GCTG-----------ATA-----------AA------------------------------------------------------------------------------------------------AACGTACGTAT-------------ATGT---------------------------------------------------------------GTGTGT------------------GTGACTCAG--------------------------------------------------------------------------------TCTCTGTATGTA--TG---------------------------T------AT------GTATG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTATGCGTGT--GTGA--G-------------------------------------------------------------------------------------------------------------CTTC-------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302808:901417-901587 - G-TTCGACGCTGCCAGC-GCCGACTGTT-----GCTCAT-----------CTCC-----CGAC-----------G---------------------------------------------------------------------------------------------------------ACGCC---ATTGT-------------------C-------------------------------------------------------CTGTG--T------GTGCTCT--GGTATGCG----------------T--------------------------GTGCGCGTGCATGTGTCCGT------------G----------------------------T--CCATGT---------------------------CCGTGTCTGTGAGTGTATCTGT-------------------G----TCTGTGGCGG-------TGTCCTGAAAGCTGG-AGC--------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------GGCA--ATGCGGC--CGG------------------------------TAG---------------------------
droFic1 scf7180000451789:487753-487957 - C-AACAGCAGCAACAAC-AGCAGCAGCA-----GCAGCA-----------AC--A---GCAGC-----------AACAACAGCAAC--------------------------------ATCAGAA-AGAGCA-GC--------A----------------------------A-----------CATCAGCGGC-------------GGCAACGCGTTC------AA--GTGAAAA-GTCCGCAGCTGCTGCCCGCACT--TCATGTAC----------------------------T--ACGATTC------CAAAT--GTGTGAGTGTGC----------CAGTGTGTGTG----------------TGTCTC------------------------TATCT--GTGTGC---------------------------------------A------AGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGAGT--GTGCGAGT--GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490214:839958-840163 - C-AGTAGCAGCAGCATC-ATAAGCCCTG-----AA------TCCGCCGGCGTCTGACCGCAAATTC---------GTAACA------------------------------------------------TC------------A----------------------------ACAAA------------------AATGAAATTAACATCAAA---GTTGCCCAACCAG--------------------------CCAT-------------GCATGT----AT----CTG--TGTGTG--TG--------------------------TGTAAGTGTGTGTGTGTGTATGTGTATGTGTTT------------G----------------------------T--GTGTAT---------------------------CGGTGTGTGTGTGCGTATCTGT-------------------GTT-----------------------------------------------------------------------------------------------------------------GTAT--ATTT--GT--------------------------------------------------------------------------------------------------AG-----CCATGTG-------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777516:2970-3146 + C-ATCAGCAGCAACAGC-AGCAGCAACA-----ACAACA-----------GCCA-----CACC-----------AACAACAGCAACAAAAGCGCACTTCAA-----------------------------------------------------ACGCCG-------------------------------CA------------------------------------------------------------------------------TG--T------TCGTATCGG--TGTGTTGC------TG--------------------CCC--CTGTGTGTG--TGTGTT----TTAATGG------------AAG------AGAGAGGACATGCAGCTG--TA---------------------------A------AT------ATCCC------TCA-------------------G----T--------------------------------------------------------------------------------------------------------ATGTGTGTGA--GTGT--G-------------------------------------------------------------------------------------------------------------TGTG-------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:297547-297675 - T-TTCAGTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTTCGATGGCGT-------------GGGCGTG-------------------------------------------------------TG--T------GTGTGTG--TGTGTGTG----------------T--GTG------------------------TGTGTGTGTGTGTGTGT------------GTG------TGTGTGTGTATGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGT--GT--------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415381:115313-115437 - T-GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--T------GTGTGTG--TGTGTGTG----------------T--GTG------------------------TGTGTGTGTGTGTGTGT------------GTG------TGTGTGTGTGTGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGT--GTTGGC------------------CAGGATAAGTATCCACTAAG----------------------------------------------------------------CAGTTG-------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409182:66453-66642 + ACATCATCATTAGCAT--------------------ATT-----------GACAT---GTGGCCAAATTT----G------------------------------------GTCACGTTCCATTTCATTTC------------AATTCATTCTGAC--------------------------------ATTGCC-AACGGAGTTCGAATCAAT---TTCCCATCTCCAG--------------------------CCAAGTTCG-----TGT----------------ATG--TGTGTTT--------------------G--------TGT------------------G------TTTGTGTGTGTGTGT--G--------------TGTGTGTGTGTG--T--GTGTGT---------------------------------------T------TGT-------------------G----TGT------------------------------------------------------------------------------------------------------GT--GT------GTGT--G-------------------------------------------------------------------------------------------------------------TGTG-------------------------------------------------------------------------------------------------------------
dm3 chrX:4358968-4359157 + C-AGCAGCAGCAGCAGA-AGCGGCAGCA-----GCTCAG-----------CATCA---GCATCATTAGAGCCAGAT---------T--A------------------------------------------------------------------------------------------------TACACTCATCT-------------GAAT---------------------------------------------------------------CTGTTT------------------ATGTTTCAGTATCTGT--------------------------ATCTGTATCTGTATCTTTGT------------CTC------TGTCTGCGCCT----------------------CTGCTTTGTAACCGTGG------C----------------TTTGTCTTTAGACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCGAGT--GTCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------AAG---------------------------
droSim2 2l:7720902-7721121 - C-GATAATAGCAACAAC-AACAGCGACA-----C----------------------------------------A---------ATAAAAGAATTTGTCAGGCGGCGTTTGTTTTTGTTCACCCTCTCTCT------------TTCTCTCTCGCCC--------------------------------ATCGTC-T------------GTGTCGTGCTT------TCCG--------------------------CTCCGTCTC-----TGT----------------CTG--CCGGCCT-TCGTC--------------------------------------------------GCGTGT------------GTG------CGTGTGTCCCCGTGTGCG--TG---------------------------C------GT------GCTTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGC--GTCC--GTCG----------------------------------------TCTGTGCAGCGCAAAGAT-----------------------------------------------A---------------------------------------------------A-------------------------------AAA---------------------------
droSec2 scaffold_0:2225759-2225908 - C-ATGTTGGCCATTG-------------------------------------TC-----C-----------------------------------------------------------------------------------------------------------------------------TGCGGTGGTGT-------------GTGT---------------------------------------------------------------GT--------GTG--------T--GTGTGTGTGTGTGTGT--------------------------G--------------TGTGT------------GTG------TGTGTGTGTGTGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGT--GT--------------------------------------------------------------------------------------------------------------TG-------------CTCCC-------------T-----------------------------------------------GGGCACAATGGTCAGCAAAATGCGGTCTCC
droYak3 X:13119023-13119212 - C-ATCATCATCATCATC-GGCATCGACA-----ACTCAG-----------GTCAG---G----------------------------------------------------------CCCCGCTTCTGTCC------------GTCTCTTTCTAACGTCGTATGTCTGTCTCTCTCACTTGCATC---CTTGAC--------------------------------------------------------------------------------------------------------------CTG------CGTGT--GTGTGTGTGTGT----------GTGTGTGTGTG----------------TGTGTGTA------------------------TGT--GCGTTCTGACATCCTGAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGTTT--GTGT--TT-----------------------------------------------------------------------------------------------TGTGA-----CAGCGTC-------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:1734989-1735149 + C-ATCAGAATCAGCATC-ATTAGAGCCG-----G----------------------------------------AT---------T--A------------------------------------------------------------------------------------------------TACACTCATCT-------------GAAT---------------------------------------------------------------CTGTTT------------------ATGTTTCTGTTTCTGT--ATC------------------------TGCATCTGTATCTGTAT------------CTG------CATCTGTATCTGCAT-------------------------------GTGG------C----------------TTTGTCTTAAGATTTTGTGTGCGTC----T--------------------------------------------------------------------------------------------------------GTGAGT--GCTCGAGT--GTCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------AAG---------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
C-TTTACCAGCAACATC-ATCATCAGCA-----GCTGTT-----------GTCGA---GCAGCTTCATGC----G------------------------------------GT-AAGTGTAAACT-ATTTC------------A----------------------------ACTCACCTGGGCC---ATTGAC-------------GTCA----------------------------------------------------------TGTG--T------GTGGCTT--TGTGTGTG----------------T--GTG------------------------TGTGTG------------------TGTGTGTATGTGTGTGCCCGTGTCCGCGT-----------------------------------------CCGTTTCTGTGTCTGTGTCTGC-------------------G----TCTG------TGTGTGCTGTTGCCAAAGCCAAAAAC--------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------CGGG--ATGTGGT--TGCCAGCGGGGATTGGGTGGACGAGCAGCGACAGA----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................TT-----------GTCGA---GCAGCTTCATGC----G------------------------------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
................C-ATCATCAGCA-----GCTGTT-----------GTCGA---GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
...TTACCAGCAACATC-ATCATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.........................GCA-----GCTGTT-----------GTCGA---GCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201010000000000000000000000000000000000000000000000000000000000000
.........GCAACATC-ATCATCAGCA-----GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.141001000000000000000000000000000000000000000000000000000000000000
..........CAACATC-ATCATCAGCA-----GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.091000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GGCTT--TGTGTGTG----------------T--GTG------------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.081000000000000000000000000000000100000000000000000000000000000000
droMoj3
C-ATCAACAGCAACATC-ATCATCAGCA-----GCTGCT-----------GTCGA---GCAGCTTTATGC----G------------------------------------GT-AAGTGTAAACT-ATTTC------------A----------------------------ACTCACCTGGGCC---ATTGAC-------------GTCAGCGTGTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAGCCAAAAACCGGGCATTTCAAGTGTGTGTGTGTGTGTGTGTGGAGGGGGGAGGGGGGCAATCCCCCT--------------------------------------------------------------------------CGGTACAGCATGTGAGTGCGAGGAGCTGGGGGATTCGAGCTTGGGGTG----GGATACCGGGCCATGGG-----------------------------------------------------------------------------CGGA----------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
C-ATTAATATCAACAAGCAACAGTGGCG-----C----------------------------------------C----------GAAAAGTATGTGTTAC-----------------ATTTGTA-AGTAGGAGGACACATGT------------------------------GT---ATATGAGTGTAGTTATGT-------------AAATGTG-------------------------------------------------------TG--T------GTGTGTG--TGTGTGTG----------------T--GTG------------------------TGTGTGTGTGTGTGTGT------------GTG------TGTGTGTGTGTGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGTGTGTGAGCAAGCAAAAGGCAGCAAGT-------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------GGG---------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................TG------------------------TGTGTGTGTGTGTGTGT------------GTG------TGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202
droWil2
A-TCAACACAGGAT-----------GTTTTTGCGCTCA--------------------------TTATGC----G------------------------------------GC-AGCTGTATT-------C------------A----------------------------C--------------CACGTGTGT----------------------------------------------------------------------------GCGTGT----GT----GT--GTGTGTG--------TG--------------------TGTGTGT------GTGTGTGTGT----------------------GTG----------------------TG--TGTGTGTGT------GTG-----------TGTGTGTGTGTGTGTGTGTCTGTGTCTGT-------------------G----T------CTATGTCT-------------------------------------------------------------------------------------------------------TTT--GT--------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------------C----------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................T------GTGTGTGTGT----------------------GTG----------------------TG--TGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.35707000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTCTGTGTCTGT-------------------...............................................................................................................................................................................................................................................................................................................................................................24200.05101000
dp5
C-TATATCAATGCT-----------TTCT-----------------------------------------------------------------------------------------------------------------------------------------------------CTGTGTC---T---------------------------------------------------------------------------------------------------------------CTGACTG------TGTGT--GTGTGTGTGTGT----------GTGTGTGTGTG----------------TGTGTGTG------------------------TGT--GTGTGGTGGTGTGTTGTT--------T------GT------TTGTG------CGC-------------------G----T--------------------------------------------------------------------------------------------------------GTTTATATTT--GTGT--GG--------------------------------------------------------------------------------------------------------------TG-------------CTCCTTCCGGTGAAAAATTGACATATTTGGTGCTGCCAACTGGAATC--GTCGACTGCCAGCAACTC-G---------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................TGTGTGTG----------------TGTGTGTG------------------------TGT--GTGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001000000
......................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTG----------------TGTGTGTG------------------------TGT--GTG......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
droPer2
T-TTA-CCATT----------TGCCATG-----AT----GAGCAGCCAGCAGCCAGCAGCAGTTGCAG-----GGA------------------------------------G-AAATGTAGGAA-AGCTT------------A----------------------------ACCCTACTCGCAC---ATTCAT-------------TCGAG----------------------AACGCACACAGGGG-TCCC--------CC-------------CT--------------GTCTGTG----------------T--GTG--TG----TGT------------------G------TGTGT------------GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTATCCACGTTGTTTGTTTGTTTGTTTGTTT--GTTT--G-------------------------------------------------------------------------------------------------------------TTTG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
T-GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--T------GTGTATG--TGTGTGTG----------------T--------------------------GTGTGTGTGTGTGTGTGTGT------------G----------------------------T--GTGTGTTGGTGTGTTAGCTGG-TGTGT------C----------------TATGT-------------------GTTAGT--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGG--GTTA----------------------------------------CCTGTAGAAGA--------------------------------------CCGT----------------TAACTAAGCACACG--------------------GC--AAATGTT--TGCCAGCCGGGA---------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................TG--TGTGTGTG----------------T--------------------------GTGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.55110000011
.................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGT------------G----------------------------T--GTGTGTTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000003
..................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT------------G----------------------------T--GTGTGTTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------------------GTTAGT--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTG..................................................................................................................................................................................................................................22200.051000001
..............................................................................................................................................................................................................................................................................................ATG--TGTGTGTG----------------T--------------------------GTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
...TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--T------GTGTATG--TGTGTGTG----------------T--------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
droBip1
C-CTCAGTCGCAGCACC-AGCACCAGCA-----GCCGTC-----------AG--T---GCTG-----------ATA-----------AA------------------------------------------------------------------------------------------------AACGTACGTAT-------------ATGT---------------------------------------------------------------GTGTGT------------------GTGACTCAG--------------------------------------------------------------------------------TCTCTGTATGTA--TG---------------------------T------AT------GTATG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTATGCGTGT--GTGA--G-------------------------------------------------------------------------------------------------------------CTTC-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
G-TTCGACGCTGCCAGC-GCCGACTGTT-----GCTCAT-----------CTCC-----CGAC-----------G---------------------------------------------------------------------------------------------------------ACGCC---ATTGT-------------------C-------------------------------------------------------CTGTG--T------GTGCTCT--GGTATGCG----------------T--------------------------GTGCGCGTGCATGTGTCCGT------------G----------------------------T--CCATGT---------------------------CCGTGTCTGTGAGTGTATCTGT-------------------G----TCTGTGGCGG-------TGTCCTGAAAGCTGG-AGC--------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------GGCA--ATGCGGC--CGG------------------------------TAG---------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
C-AACAGCAGCAACAAC-AGCAGCAGCA-----GCAGCA-----------AC--A---GCAGC-----------AACAACAGCAAC--------------------------------ATCAGAA-AGAGCA-GC--------A----------------------------A-----------CATCAGCGGC-------------GGCAACGCGTTC------AA--GTGAAAA-GTCCGCAGCTGCTGCCCGCACT--TCATGTAC----------------------------T--ACGATTC------CAAAT--GTGTGAGTGTGC----------CAGTGTGTGTG----------------TGTCTC------------------------TATCT--GTGTGC---------------------------------------A------AGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGAGT--GTGCGAGT--GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
C-AGTAGCAGCAGCATC-ATAAGCCCTG-----AA------TCCGCCGGCGTCTGACCGCAAATTC---------GTAACA------------------------------------------------TC------------A----------------------------ACAAA------------------AATGAAATTAACATCAAA---GTTGCCCAACCAG--------------------------CCAT-------------GCATGT----AT----CTG--TGTGTG--TG--------------------------TGTAAGTGTGTGTGTGTGTATGTGTATGTGTTT------------G----------------------------T--GTGTAT---------------------------CGGTGTGTGTGTGCGTATCTGT-------------------GTT-----------------------------------------------------------------------------------------------------------------GTAT--ATTT--GT--------------------------------------------------------------------------------------------------AG-----CCATGTG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
C-ATCAGCAGCAACAGC-AGCAGCAACA-----ACAACA-----------GCCA-----CACC-----------AACAACAGCAACAAAAGCGCACTTCAA-----------------------------------------------------ACGCCG-------------------------------CA------------------------------------------------------------------------------TG--T------TCGTATCGG--TGTGTTGC------TG--------------------CCC--CTGTGTGTG--TGTGTT----TTAATGG------------AAG------AGAGAGGACATGCAGCTG--TA---------------------------A------AT------ATCCC------TCA-------------------G----T--------------------------------------------------------------------------------------------------------ATGTGTGTGA--GTGT--G-------------------------------------------------------------------------------------------------------------TGTG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T-TTCAGTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTTCGATGGCGT-------------GGGCGTG-------------------------------------------------------TG--T------GTGTGTG--TGTGTGTG----------------T--GTG------------------------TGTGTGTGTGTGTGTGT------------GTG------TGTGTGTGTATGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGT--GT--------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T-GTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--T------GTGTGTG--TGTGTGTG----------------T--GTG------------------------TGTGTGTGTGTGTGTGT------------GTG------TGTGTGTGTGTGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGT--GTTGGC------------------CAGGATAAGTATCCACTAAG----------------------------------------------------------------CAGTTG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACATCATCATTAGCAT--------------------ATT-----------GACAT---GTGGCCAAATTT----G------------------------------------GTCACGTTCCATTTCATTTC------------AATTCATTCTGAC--------------------------------ATTGCC-AACGGAGTTCGAATCAAT---TTCCCATCTCCAG--------------------------CCAAGTTCG-----TGT----------------ATG--TGTGTTT--------------------G--------TGT------------------G------TTTGTGTGTGTGTGT--G--------------TGTGTGTGTGTG--T--GTGTGT---------------------------------------T------TGT-------------------G----TGT------------------------------------------------------------------------------------------------------GT--GT------GTGT--G-------------------------------------------------------------------------------------------------------------TGTG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
C-AGCAGCAGCAGCAGA-AGCGGCAGCA-----GCTCAG-----------CATCA---GCATCATTAGAGCCAGAT---------T--A------------------------------------------------------------------------------------------------TACACTCATCT-------------GAAT---------------------------------------------------------------CTGTTT------------------ATGTTTCAGTATCTGT--------------------------ATCTGTATCTGTATCTTTGT------------CTC------TGTCTGCGCCT----------------------CTGCTTTGTAACCGTGG------C----------------TTTGTCTTTAGACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCGAGT--GTCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------AAG---------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTAGACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGT.............................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCGAGT--GTCGC..........................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCG....................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GC.......................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................A---GCATCATTAGAGCCAGAT---------T--A------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCGAGT--G..............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCGAGT--GT.............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCTGTATCTTTGT------------CTC------TGTCTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TGTATCTTTGT------------CTC------TGTCTGCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTAGACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGTG............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CATCT-------------GAAT---------------------------------------------------------------CTGTTT------------------ATGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCGAGT--GTCGC..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCG....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TTGT------------CTC------TGTCTGCGCCT----------------------CTG............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TTGT------------CTC------TGTCTGCGCCT----------------------CTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTAGACTTTGT------G----T--------------------------------------------------------------------------------------------------------GCGTGT--GCTCG....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTCAGTATCTGT--------------------------ATCTGTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
C-AGCAGCAGCAGCAGA-AGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCAGTATCTGT--------------------------ATCTGTATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCAGTATCTGT--------------------------ATCTGTATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CAGTATCTGT--------------------------ATCTGTATCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATCTGT--------------------------ATCTGTATCTGTATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CAGTATCTGT--------------------------ATCTGTATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATCTGT--------------------------ATCTGTATCTGTATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATCTGT--------------------------ATCTGTATCTGTATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
C-GATAATAGCAACAAC-AACAGCGACA-----C----------------------------------------A---------ATAAAAGAATTTGTCAGGCGGCGTTTGTTTTTGTTCACCCTCTCTCT------------TTCTCTCTCGCCC--------------------------------ATCGTC-T------------GTGTCGTGCTT------TCCG--------------------------CTCCGTCTC-----TGT----------------CTG--CCGGCCT-TCGTC--------------------------------------------------GCGTGT------------GTG------CGTGTGTCCCCGTGTGCG--TG---------------------------C------GT------GCTTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGC--GTCC--GTCG----------------------------------------TCTGTGCAGCGCAAAGAT-----------------------------------------------A---------------------------------------------------A-------------------------------AAA---------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................TTTTGTTCACCCTCTCTCT------------TTCTCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
....................................................................................................................................................TCTCGCCC--------------------------------ATCGTC-T------------GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
......................................................................................................................................................TCGCCC--------------------------------ATCGTC-T------------GTGTCGTGCTT------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
................................................................................................................................................................................................................................................................TCCGTCTC-----TGT----------------CTG--CCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCC--GTCG----------------------------------------TCTGTGCAGCGCAAAGAT-----------------------------------------------A---------------------------------------------------..............................................................2711.00110000000000000000
...........................................................................................................................................................................................................................................................................................................T-TCGTC--------------------------------------------------GCGTGT------------GTG------CGTGTGTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...................................................................................................................................................CTCTCGCCC--------------------------------ATCGTC-T------------GTGTCGTGCTT------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
........................................................................................................................................................GCCC--------------------------------ATCGTC-T------------GTGTCGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
........................................................................................AAGAATTTGTCAGGCGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
..........................................................................A---------ATAAAAGAATTTGTCAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.........................................................................................................................CCCTCTCTCT------------TTCTCTCTCGCCC--------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
................................................................................................................................................................................................................................................................................................CTG--CCGGCCT-TCGTC--------------------------------------------------GCGTGT------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
...............................................................................................................................................................................................................................................................CTCCGTCTC-----TGT----------------CTG--CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1790.11100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGC--GT...................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
C-ATGTTGGCCATTG-------------------------------------TC-----C-----------------------------------------------------------------------------------------------------------------------------TGCGGTGGTGT-------------GTGT---------------------------------------------------------------GT--------GTG--------T--GTGTGTGTGTGTGTGT--------------------------G--------------TGTGT------------GTG------TGTGTGTGTGTGTGTGTG--TG---------------------------T------GT------GTGTG------TGT-------------------G----T--------------------------------------------------------------------------------------------------------GTGTGTGTGT--GTGT--GT--------------------------------------------------------------------------------------------------------------TG-------------CTCCC-------------T-----------------------------------------------GGGCACAATGGTCAGCAAAATGCGGTCTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................GGTGT-------------GTGT---------------------------------------------------------------GT--------GTG--------T--GTGTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.0610100
............................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGT--------------------------G--------------TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
..................................................................................................................................................................................................................TGT---------------------------------------------------------------GT--------GTG--------T--GTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
droYak3
C-ATCATCATCATCATC-GGCATCGACA-----ACTCAG-----------GTCAG---G----------------------------------------------------------CCCCGCTTCTGTCC------------GTCTCTTTCTAACGTCGTATGTCTGTCTCTCTCACTTGCATC---CTTGAC--------------------------------------------------------------------------------------------------------------CTG------CGTGT--GTGTGTGTGTGT----------GTGTGTGTGTG----------------TGTGTGTA------------------------TGT--GCGTTCTGACATCCTGAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTGTTT--GTGT--TT-----------------------------------------------------------------------------------------------TGTGA-----CAGCGTC-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
C-ATCAGAATCAGCATC-ATTAGAGCCG-----G----------------------------------------AT---------T--A------------------------------------------------------------------------------------------------TACACTCATCT-------------GAAT---------------------------------------------------------------CTGTTT------------------ATGTTTCTGTTTCTGT--ATC------------------------TGCATCTGTATCTGTAT------------CTG------CATCTGTATCTGCAT-------------------------------GTGG------C----------------TTTGTCTTAAGATTTTGTGTGCGTC----T--------------------------------------------------------------------------------------------------------GTGAGT--GCTCGAGT--GTCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------AAG---------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 05:59 PM