ID:

dvi_12846

 Coordinate:

scaffold_12970:1983578-1983728 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.3 -11.2

Flybase annnotation

exon [dvir_GLEANR_4019:2]; CDS [Dvir\GJ19133-cds]; intron [Dvir\GJ19133-in]

Repeatable elements

NameClassFamilyStrand
(TATATG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_10324:92278-92295 +
  2. dvi_12846  scaffold_12970:1983609-1983626 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTCTGTGTGTGTGTGTATGTATATGGCTTTTAATGCATATGTATATTTGGTAATTTTCCGGTCATTGTACAGACTATATATATATTATTTGTGAGTGTGTGTATGTGTGTGTATGTAAATATACTTTTATTTGTATTAAATTTAATCATTTGATTAATTTATTTTCTCTGTTCGGTTTTTTTGTTTTTTTTTTTTTTTAGCTGCGCTCTGATGTCGTGCCCAAAACAGCCGAGAATTTCCGTGCCCTGTG
*********************************************************************************.((((....((.((((((((.((((((....)))))).)))))))).))...))))((((((.((((....))))))))))......................******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060663
160_0-2h_embryos_total
 M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 M061
embryo
 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 V047
embryo
 M027
male body		 SRR060657
140_testes_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060655
9x160_testes_total
 SRR060679
140x9_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR1106717
embryo_6-8h
 SRR1106727
larvae
 SRR1106729
mixed whole adult body
 SRR1106730
embryo_16-30h
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060656
9x160_ovaries_total
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGC..................... 25 0 1 52.00 52 17 7 10 1 3 1 5 1 0 0 1 1 2 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAAC........................ 22 0 1 10.00 10 3 2 0 0 0 1 0 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAACAGC..................... 24 0 1 7.00 7 1 2 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCAAAACAGCCGAGAATTTCCGT........ 23 0 1 6.00 6 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGCC.................... 26 0 1 5.00 5 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACAGCCGAGAATTTCCGT........ 19 0 1 5.00 5 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAAAACAGCCGAGAATTTCCGT........ 22 0 1 4.00 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACA....................... 23 0 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTCGTGCCCAAAACAGCCGA.................. 20 0 1 3.00 3 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTGATGTCGTGCCCAAAACAGCC.................... 23 0 1 3.00 3 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAACAGCCGAGAATTTCCGT........ 20 0 1 3.00 3 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GATGTCGTGCCCAAAACAGC..................... 20 0 1 3.00 3 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAAACAGCCGAGAATTTCCGT........ 21 0 1 3.00 3 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGATGTCGTGCCCAAAACAGC..................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAAC........................ 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTGCGCTCTGATGTCGTGCC.............................. 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACAGCCGAGAATTTCCGT........ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAAAACAGCCGAGAATTTCC.......... 20 0 1 2.00 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCTGATGTCGTGCCCAAAACAGC..................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTTCTCTGTTCGGTGCTTTTGCT................................................................. 23 3 2 1.50 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GATGTCGTGCCCAAAACAGCCGAG................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTGCGCTCTGATGTCGTGCCCAAAA......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTGATGTCGTGCCCAAAAC........................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAA.......................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TATGGAGCTGCGCTCTGATGTCG.................................. 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAACCA....................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGTCGTGCCCAAAACAGCCGAGAATT............. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTGCGCTCTGATGTCGTGCCC............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGGAGCTGCGCTCTGATGTCGTG................................ 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAACACAGC..................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAACAG...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGATGTCGTGCCCAAAACAGCC.................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTGCGCTCTGATGTCGTGCCC............................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGCCGAGAATTTCCGT........ 38 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TATGGAGCTGCGCTCTGATGTCGTGC............................... 26 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTGATGTCGTGCCCAAAACAGC..................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTGCCCAAAACAGCCGAGA................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGCTGCGCTCTGATGTCGTG................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTGCCCAAAACAGCCGAGAATTTCCGTG....... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCAAAACAGCCGAGAATTTCC.......... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TATGGAGCTGCGCTCTGATGTCGTGCCCAAAACAGCCGAGAA............... 42 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAA........................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GATGTCGTGCCCAAAACAGCC.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAAC..................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCCAAAACAGCCGAGAATT............. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTGGTGTCGTGCCCAAAACAGCCGA.................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAACAGCC.................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCCCTGATGTCGTGCCCAAAACAGCC.................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGGAGCTGCGCTCTGATGTCGTGCCCAAAACAGCCGAGAAT.............. 41 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGTCGTGCCCAAAACAGCCGAGA................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTGCCCAAAACAGCCGAGAATTTCCGT........ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATGTCGTGCCCAAAACAGCC.................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TCTCTGTTCGGTTTTTTTG................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTGCGCTCTGATGTCGTGCCCA............................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGCCGA.................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATGGAGCTGCGCTCTGATGTCGTGC............................... 25 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTGCGCTCTGATGTCGTGCCCA............................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GATGTCGTGCCCAAAACAG...................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCAAAACAGCCGTGAATTTCCGT........ 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAAACAGCCGAGAATTTCCGTG....... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAAA........................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTATGGAGCTGCGCTCTGATGT.................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCCAAAACAGCCGAGAAT.............. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TATATTATTTGTGAGTGT........................................................................................................................................................ 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................TTTGTGAGTGTGTGTATGTGT.............................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTGCGCTCTGATCTCGTGC............................... 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTTTTATAGCTGCGGTCT......................................... 20 2 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................TAAATTTATTTTCTCTGTT.............................................................................. 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTTTTATAGCTGCGGTCT......................................... 19 2 13 0.31 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0
.................................................................................................................................................................................................TTATGGAGCTGCGCTCTGATG..................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATTTCTGCGCTCTGATGTCG.................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................CTCTGTTCTGCTTTTTTGGTTTT.............................................................. 23 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................TGTGTGTGTATGTAAATAC................................................................................................................................ 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................TTTTTATAGCTGCGGTCT......................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................TGTGTGTATGTGTGTGTATG....................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGTGTGTGTATGTGTGTGTATC....................................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGAGACACACACACACATACATATACCGAAAATTACGTATACATATAAACCATTAAAAGGCCAGTAACATGTCTGATATATATATAATAAACACTCACACACATACACACACATACATTTATATGAAAATAAACATAATTTAAATTAGTAAACTAATTAAATAAAAGAGACAAGCCAAAAAAACAAAAAAAAAAAAAAATCGACGCGAGACTACAGCACGGGTTTTGTCGGCTCTTAAAGGCACGGGACAC
*******************************************************************.((((....((.((((((((.((((((....)))))).)))))))).))...))))((((((.((((....))))))))))......................********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 M061
embryo
 SRR060687
9_0-2h_embryos_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
..........................................................................................................................................................................................................ACGCGAGACTACAGCACGGGTT........................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAAAAATAGACGCGAGA......................................... 19 1 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................................................................................................ACAACCCAAAAGAACAAAAAAAAGAAA....................................................... 27 3 8 0.13 1 0 0 1 0 0 0 0
.........................................................................................................................................................................ACAGGCCAAAAGAACAAAAA.............................................................. 20 2 9 0.11 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................TCGGCTATTCTAGGCACGG..... 19 3 11 0.09 1 0 0 0 0 1 0 0
............................................................................................................................................................................................AAAAAAAAAAATGGATGCGA........................................... 20 2 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................AAAAAAAAAATGGATGCGA........................................... 19 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1983528-1983778 + dvi_12846 TCTCTGTGTGTGTGTGTATGTATATGGCTTTTAATGCATATGTATA--------TTTGGTAATTTTCCGGTCATTGTA-------------------------------------------------------------------------------------------------------------------------------------------CAGAC-TATATATA-------TATTATTTGTGAGTGTGTGTATGT--G------TG--------------------TG-TATGTAAATATACTTTTATTTGTATTAAATTTAATCATTTGATTAATTTATTTT------------------------CT------------CTGTTCGGTT---------------------TTTTTGTT-----------------TTTTTTTTTTTTTAGCTGCGCTCTGATGTCGTGCCCAAAACAGCCGAGAATTTCCGTGCCCTGTG
droMoj3 scaffold_6359:3193266-3193489 + TATCTGTGTGTGCGTGTGTGCATACA--------------------TGTAGTTT--TGGTAATTTTCCGGTCATTGTACATTGTACATTATATGTACATA------------------------------------TGTA-----------------------------------------------------------------------------------TATATT------------TATTAAT------------AT--A---------------------------------TGTGCATGCATTTGATTT--------------------------------------------------CATTTGACACTTGTCTGATTTG---------------------------------ATTTATTTATTCATTATTTCGA--TTTCGATTTTCTAGCTGCGCTCTGACGTCGTGCCGAAGACAGCGGAGAATTTCCGTGCTCTGTG
droGri2 scaffold_15081:3247876-3248095 - TGTGTGTGTGTGTGTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------GTTGTTGC-AATTGATATCATTTTGTTGCATATTTTTTCTCTATTTGTATTTGGGTTTTATCATTTTGAAATATTTATG-------AGATGTAAAAAAAACTATGTATGTTTG------TG--------------------TG-TATACAGACATACTTTATTTTGCATTATTTTTTCC----------------TTT----------CT----CATTTAACGCCTGTCC------------GTTT---------------------TTTTTTTT-----------------CTT-----------------------------------------------TCTTTTTTTTGCCCG
droWil2 scf2_1100000004590:4401534-4401778 + TAAAAATATATATATGTATATATTTT--------------------TATA--------------------CACACA--C---AT-----ACAACC----AAACACACATTAAACCATGCATCATTGACTTTGCGTA---------------------------------------------------------------------------------CAAGTGTATACGTG-------TGTATGTATGTAAT----------------------------GTACATATATAAAGA-GATAGAGAA---CCCGAAT----------------TAAT-----------------------------------CGATAATTGTCTTTTTCG---------------------------------TCT------TTCCCCATTTCCATTTTTTAAATTTCCAGCTGCGCTCTGATGTTGTGCCCAAAACCGCTGAAAATTTCCGCGCCTTGTG
dp5 XL_group1e:10395954-10396080 - TGAATATAATGTTTTATGTATGTA----------------------------------------------------------------------------------------------------------------------TATTCAGTTAAATAATCA-ATAACC------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT--GT-------------------------------------CTTTTTT----GTACACCTTTTCCAGCTGCGCTCCGATGTGGTACCCAAGACTGCCGAAAATTTCCGTGCCCTGTG
droPer2 scaffold_2421:5309-5502 + TCTCTGTGTGTGTGTGTGTGTGTGTG--------------------TGTG-------------------------------------------------------------------------------------------------------TAACCGG-GGTTCC------------T--------------------------------------------------GCTCCATTTATTATTTATGTGCATTTTGATGT--G------GA--------------------AAGCATTTTCATGTTTTTTTCTTTATTTTCCTTTCCCTTTTTTGGTTCATTTGTTTTGGTAAATATTTGTGCT--------------------------------TCTCCTTCTCCTCCTCTATTT---------------------------------TTTTTTG-------------------------------G-----TGGTTTTGGTTTC
droAna3 scaffold_13337:6032187-6032304 + TATAGTTTTAAACATATGTATGTA------------------------------TTTA------------TTCTTG---------------------------------------------------------------------------------------------------------------------------------------------------TATATATG-------TGTTATTAATGGATATATGTATAT--A------TG--------------------TA-GCTGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------C-ACAATATGTTC---ATTTCGTAATACATTTTTTTTTTTGA
droBip1 scf7180000396518:95449-95552 + TATAGTTTTAAACATATGTATGTA------------------------------TTTA------------TTCTCGTA-------------------------------------------------------------------------------------------------------------------------------------------TAGATATATATATG-------TGTTATTAATGGATATATGTATAT--A------TG--------------------TA-GCTGCCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA-ATATGTTCATTT
droKik1 scf7180000302495:13647-13840 - CCTCTCTCTATATATGGTAGTATACGGTATATTTGGCAT--------------------------------------------------ATATATATATA------------------------------------TGTA-----------------------------------------------------------------------------------TATATATGTTCGATT------TACTAGGTATATAAATAT--ATTTGTAAATATATTTGTTT--CTTGGCAG---T----------------TTTCGATTAAAATT----------------------------------------------------------------------CTTCAAATGTTCTTTTTGGTGGCCTT--------CCTTTGTT----------CTGCATTGGCTGTGCTCCTGGCTCGTGCTC-----------------------------
droFic1 scf7180000453495:486511-486578 - GTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTTTCAGCTGCGCTCCGATGTCGTGCCCAAGACCGCCGAGAACTTCCGTGCGCTGTG
droEle1 scf7180000491182:57974-58084 + ATTTTATTATTTTTTATTT----------------------------------------------------------------------------------------------------------------------------------TGTACTAATTAAAATTTC------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATTT----GATTGCCTCTTTTAGCTGCGCTCCGACGTCGTGCCTAAGACCGCCGAGAACTTCCGCGCCTTGTG
droRho1 scf7180000776792:36306-36385 + GATTTCTGTGCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----GATTGTCCTTTCCAGCTGCGCTCCGACGTCGTGCCTAAGACCGCCGAGAACTTCCGCGCCTTGTG
droBia1 scf7180000302126:792004-792107 + AATATG--------------------------------------------------------------------------------------------------------------------------------------ATTTCCCCGTTTACTAATTG-CCTTTC------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CCCTT----TGTTGCATCTTCCAGCTGCGCTCCGACGTTGTGCCCAAGACCGCCGAGAACTTCCGCGCCTTGTG
droTak1 scf7180000415289:276886-276949 - TTCCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCAGCTGCGCTCCGACGTTGTGCCCAAGACCGCCGAGAACTTCCGCGCCTTGTG
droEug1 scf7180000409209:735810-735936 + TATGTATGTATGTATATAAT---AAA--------------------TTT-------------------------------------------------------------------------------------------ATTTACTTTATTATTATTAT-ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCCACCTCATCTCTAATC---------------------------------GTTTTTACTTTGTTTAGTTGCTGCGGTTGCGTTTTTTGTTGTTGTTTTTTTTTGGTT
dm3 chr2R:12185845-12185983 - TATCTATCTATATATCTATCTATATA--------------------TCTA--------------------TCTATC--T---AT-----CTATCT----ATCTATCTATCTATCTATCTAT----------CTATC----------------------------------------------------------------------------------TATC-TATCTAT------------------------------CT--A--TCTATCTATCTATCTATCTATCTATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTATCTATATATCTATCTATCTAT
droSim2 x:15332174-15332289 - TATTTTTGTTAGTATT----------------------------------------------------------------------------------------------------------------------------AATTTCTTGTTTACTAACGG-AGTTCC------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTTTT----GTTTGTATTTTGCAGCTGCGCTCCGATGTCGTTCCCAAGACAGCCGAGAACTTCCGCGCCTTGTG
droSec2 scaffold_17:39638-39753 - TATTTTTGTTAGTATT----------------------------------------------------------------------------------------------------------------------------AATTTCTTGTTTACTAACGG-AGTTCC------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTTTT----GTTTGTATTTTGCAGCTGCGCTCCGATGTCGTTCCCAAGACAGCCGAGAACTTCCGCGCCTTGTG
droYak3 X:10343062-10343184 - TTTGTTTGTGTATTTTGCCAATATT-------------------------------------------------------------------------------------------------------------------AATTTCTTATTTACTAACCC-AGTTTT------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ATATT----GTTTGCCTTTTGCAGCTGCGCTCCGATGTCGTGCCTAAGACCGCCGAGAACTTCCGCGCCTTGTG
droEre2 scaffold_4784:17758052-17758174 - TATGTATGCATGTATGTATGTATGTA--------------------TGTA--------------------TGTATG--T---AT-----GTATGT----ATGTATGTATGTATGTATGTAT----------GTATG-------------------------------------------------------------------------------------------------------------TAT------GTATGTAT--GTATGTATGTATGTATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTATGTATGTAGTAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCTCTGTGTGTGTGTGTATGTATATGGCTTTTAATGCATATGTATA--------TTTGGTAATTTTCCGGTCATTGTA-------------------------------------------------------------------------------------------------------------------------------------------CAGAC-TATATATA-------TATTATTTGTGAGTGTGTGTATGT--G------TG--------------------TG-TATGTAAATATACTTTTATTTGTATTAAATTTAATCATTTGATTAATTTATTTT------------------------CT------------CTGTTCGGTT---------------------TTTTTGTT-----------------TTTTTTTTTTTTTAGCTGCGCTCTGATGTCGTGCCCAAAACAGCCGAGAATTTCCGTGCCCTGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGC.....................25152.005200710100000100171111000030000000001000100000000000000000000002050
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAAC........................22110.0010002100000000031000000000000000000100200000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAACAGC.....................2417.007002000010000010001000010000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAACAGCCGAGAATTTCCGT........2316.006001000000000020000000000000000000001100000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGCC....................2615.005000000000002001100000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCCGAGAATTTCCGT........1915.005000000000100010000010000000000000000000000000000000000000001010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGCCGAGAATTTCCGT........2214.004000000000000120000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACA.......................2313.003001000000000010000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCCCAAAACAGCCGA..................2013.003102000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCGTGCCCAAAACAGCC....................2313.003001000000000000000000000000000000110000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGCCGAGAATTTCCGT........2013.003000000000100000000000000000000000100100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTGCCCAAAACAGC.....................2013.003000000000001000000000000000000100000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGCCGAGAATTTCCGT........2113.003000000000001011000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCGTGCCCAAAACAGC.....................2112.002000000010000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAAC........................2112.002000000000100000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTCGTGCC..............................2112.002000200000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCGAGAATTTCCGT........1812.002000000000000020000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAGCCGAGAATTTCC..........2012.002000000000000000000000010000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATGTCGTGCCCAAAACAGC.....................2312.002001000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTGCCCAAAACAGCCGAG.................2411.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTCGTGCCCAAAA.........................2511.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCGTGCCCAAAAC........................1911.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAA..........................2011.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGCCCAAAACAGCCGAGAATT.............2611.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTCGTGCCC.............................2111.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAACAG......................2311.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCGTGCCCAAAACAGCC....................2211.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTCGTGCCC.............................2211.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGCCGAGAATTTCCGT........3811.001000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCGTGCCCAAAACAGC.....................2211.001000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCAAAACAGCCGAGA................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTCGTG................................2011.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCAAAACAGCCGAGAATTTCCGTG.......2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAACAGCCGAGAATTTCC..........2111.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAA...........................1911.001000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTGCCCAAAACAGCC....................2111.001000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAACAGCCGAGAATT.............1911.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGATGTCGTGCCCAAAACAGCC....................2511.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGCCCAAAACAGCCGAGA................2311.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCAAAACAGCCGAGAATTTCCGT........2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTGCCCAAAACAGCC....................2011.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................T------------------------CT------------CTGTTCGGTT---------------------TTTTTG....................................................................................1911.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTCGTGCCCA............................2211.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAACAGCCGA..................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTCGTGCCCA............................2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTGCCCAAAACAG......................1911.001000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGCCGAGAATTTCCGTG.......2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGTCGTGCCCAAAAA........................2211.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAACAGCCGAGAAT..............1811.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TA-------TATTATTTGTGAGTGT...............................................................................................................................................................................................................................................................1820.501000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TTTGTGAGTGTGTGTATGT--G------T.............................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................TGT--G------TG--------------------TG-TATGTAAATAC..........................................................................................................................................................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TGTGTGTATGT--G------TG--------------------TG-TATG.................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................AGTGTGTGTATGT--G------TG--------------------TG-TATC.................................................................................................................................................................................................................22200.051000000000000000000000000000000100000000000000000000000000000000
droMoj3
TATCTGTGTGTGCGTGTGTGCATACA--------------------TGTAGTTT--TGGTAATTTTCCGGTCATTGTACATTGTACATTATATGTACATA------------------------------------TGTA-----------------------------------------------------------------------------------TATATT------------TATTAAT------------AT--A---------------------------------TGTGCATGCATTTGATTT--------------------------------------------------CATTTGACACTTGTCTGATTTG---------------------------------ATTTATTTATTCATTATTTCGA--TTTCGATTTTCTAGCTGCGCTCTGACGTCGTGCCGAAGACAGCGGAGAATTTCCGTGCTCTGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGACGTCGTGCCGA............................2319.009600102
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGACGTCGTG................................1914.004400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCCGAAGACAGCGGA..................2014.004300001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGACGTCGTGC...............................2014.004300001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGACGTCGTGCCGAA...........................2513.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGACGTCGTGCCGAA...........................2413.003300000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGACGTCGTGCCGA............................2213.003300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGACGTCGTGCCGAA...........................1912.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGACGTCGTGC...............................1912.002100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTGACGTCGTGCCGA............................2112.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCTGACGTCGTGCCG.............................1912.002100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTATTCATTATTTCGA--TTTCG...........................................................2511.001100000
...................................................TTT--TGGTAATTTTCCGGTCATTGTACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGACGTCGTGC...............................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTGCCGAAGACAGCGG...................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGACGTCGTGCCGA............................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGTCGTGCCGAAGACAGCGGAG.................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTGACGTCGTGC...............................1811.001100000
.ATCTGTGTGTGCGTGTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCTGCGCTCTGACGTCGT.................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACGTCGTGCCGAAGACAGCG....................2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGACGTCGTGCCGAAGACAGC.....................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGACGTCGTGCCGAAG..........................2411.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCGTGCCGAAGACAGCGGA..................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTGACGTCGTGCCGAAGAC........................2511.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTGACGTCGTGCCGAA...........................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGACGTCGTGCCGAA...........................2311.001100000
...CTGTGTGTGCGTGTGTGCATACA--------------------TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATTTCGA--TTTCGATTTTCTAG..................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCTGACGTCGTGCCGAAGACAGCG....................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGACGTCGT.................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACGTCGTGCCGAAGACAGC.....................2211.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGACGTCGTG................................1811.001000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGTCGTGCCGAAGACAGCGGAGA................2611.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGACGTCGTGCC..............................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCGTGCCGAAGACAGCGGA..................2311.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCGGAGAATTTCCGTG.......2220.501100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAGCGGAGAATTTCC..........2020.501000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCCGAAGACAGCGGA..................1920.501000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCGGAGAATTTCCGTGCT.....2320.501100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAAGACAGCGGAGAATTTCC..........2420.501100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGACAGCGGAGAATTTCC..........2220.501000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCGGAGAATTTCC..........1920.501000001
droGri2
TGTGTGTGTGTGTGTTTTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------GTTGTTGC-AATTGATATCATTTTGTTGCATATTTTTTCTCTATTTGTATTTGGGTTTTATCATTTTGAAATATTTATG-------AGATGTAAAAAAAACTATGTATGTTTG------TG--------------------TG-TATACAGACATACTTTATTTTGCATTATTTTTTCC----------------TTT----------CT----CATTTAACGCCTGTCC------------GTTT---------------------TTTTTTTT-----------------CTT-----------------------------------------------TCTTTTTTTTGCCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAAAAATATATATATGTATATATTTT--------------------TATA--------------------CACACA--C---AT-----ACAACC----AAACACACATTAAACCATGCATCATTGACTTTGCGTA---------------------------------------------------------------------------------CAAGTGTATACGTG-------TGTATGTATGTAAT----------------------------GTACATATATAAAGA-GATAGAGAA---CCCGAAT----------------TAAT-----------------------------------CGATAATTGTCTTTTTCG---------------------------------TCT------TTCCCCATTTCCATTTTTTAAATTTCCAGCTGCGCTCTGATGTTGTGCCCAAAACCGCTGAAAATTTCCGCGCCTTGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTTGTGCCC.............................2114.00400130
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTTGTGC...............................2013.00301200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTTGTGCC..............................2213.00300300
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTTGT.................................1913.00300120
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTTGTGCCCAAAA.........................2713.00300030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTTGTGCCCA............................2313.00301110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTTGTGCCCAAAACC.......................2712.00200110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTTGTGCCCAAAAC........................2612.00200200
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTTGT.................................1812.00200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCCCAAAACCGCTGA..................2012.00200020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTGATGTTGTGCCCAAAACCGC.....................2812.00202000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTTGTGCCCAAA..........................2612.00200110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTGAAAATTTCCGCGCCTTGT.2411.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTTGTGC...............................1911.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTTGTGCCCAAAACC.......................2811.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTTGTGCCCAAAAC........................2711.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCTGCGCTCTGATGTTG..................................2111.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTGCCCAAAACCGCTGAAAATT.............2611.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCGCTGAAAATTTCC..........1911.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCCCAAAACCGCT....................1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGTGCCCAAAACCGCTGAAAAT..............2711.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTTGTGCCCAAAACCGCTGAG.................2611.00100001
......................................................................................................................................................................................................................................................................................................................................................................................AATTGTCTTTTTCG---------------------------------TCT------TTCC...........................................................................2111.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTGATGTTGTGCCCAAAAC........................2511.00100010
.....................................................................................................................................................................................................................................................................................................GA-GATAGAGAA---CCCGAAT----------------TAAT-----------------------------------CGAT.......................................................................................................................................2611.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTTGTGCCCA............................2211.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCGCTGAAAATTTCCGC........2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTTGTG................................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTCCGCGCCTTGT.1811.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTGCCCAAAACCGCTGAAAATTTCC..........2911.00101000
..............................................................................................................................................................................................................................................................................................ATATAAAGA-GATAGAGAA---CC.......................................................................................................................................................................................................2011.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCTGATGTTGTGCCCAAA..........................2411.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCTGATGTTGTGCCCAA...........................2411.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTTGTGCCCAA...........................2511.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCTGATGTTGTGCCC.............................2311.00100010
................................................................................................................................TTTGCGTA---------------------------------------------------------------------------------CAAGTGTATACGTG-------...............................................................................................................................................................................................................................................................................2211.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCTGATGTTGTGCCCA............................2120.50100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCTGATGTTGTGCCCA............................2020.50101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCTGATGTTGTGCCC.............................1920.50101000
dp5
TGAATATAATGTTTTATGTATGTA----------------------------------------------------------------------------------------------------------------------TATTCAGTTAAATAATCA-ATAACC------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT--GT-------------------------------------CTTTTTT----GTACACCTTTTCCAGCTGCGCTCCGATGTGGTACCCAAGACTGCCGAAAATTTCCGTGCCCTGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACTGCCGAAAATTTCCGT........2214.0040200000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTGGTACCCAAGACTGC.....................2214.0040310000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTGGTACCC.............................2213.0030120000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTGGTACCCAAGACTGCCGA..................2513.0030300000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTGGTACCCAAGACTGCCGA..................2413.0030300000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTGGTACCCAAGACTGCC....................2213.0030300000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTACCCAAGACTGCCGAAA................2412.0020110000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTGGTACCCAAGACTGCCGA..................2612.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCCAAGACTGCCGAAA................1912.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGTACCCAAGACTGCC....................2112.0020110000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTGGTACCCAAGACTGCCGAAA................2712.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGTACCCAAGACTGC.....................2012.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTGGTACCCAAGAC........................2512.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCCAAGACTGCCGA..................2012.0020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGATGTGGTACCCAAGACTGCC....................2612.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGCCGAAAATTTCCGT........2012.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGTACCCAAGACT.......................1812.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGTACCCAAGACTGCCGAA.................2412.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTGGTACCCAAGACTGCCGAAA................2612.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGTACCCAAGACTGCCGA..................2312.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTGGT.................................1921.5030200100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTGGT.................................1821.5030300000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACTGCCGAAAATTTCCGT........2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTGGTACCC.............................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTGGTACCCAA...........................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGCCGAAAATTTCCGTG.......2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCCAAGACTGCCG...................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTGGTACCCAAGACTGCCG...................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTGGTAC...............................2111.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTGGTACCCAAGACTG......................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACTGCCGAAAATTTCCGTGCC.....2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATGTGGTACCCAAGACTGCCGAA.................2811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTGGTACC..............................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTGGTACC..............................2111.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTGGTACCCAA...........................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTGGTACCCAAGACT.......................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCCAAGACTGCCGAAAATTTCC..........2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCGAAAATTTCCGT........1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------CTTTTTT----GTACACCTTTTCCAG..................................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCGATGTGGTACCCAAGACTGCCG...................2811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCCAAGACTGCCGAAG................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTGGTACCCAAGACTGCCGAA.................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTACCCAAGACTGC.....................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTTCCGTGCCCTGT.1911.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTGCCGAAAATTTCCGT........2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTGGTACCCAAGACTGCCGAA.................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTGGTACCC.............................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTGGTACCCAAGACTGCCGAA.................2511.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTGGTACCCAAGACTGC.....................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTGGTACC..............................2211.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACTGCCGAAAATTTCC..........2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGCCGAAAATTTCC..........1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTGGTA................................1911.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTGGTACCCAAGACT.......................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTGGTACCCAAG..........................2311.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGCCGAAAATTTCCGTGCCC....2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTACCCAAGACTGCCGA..................2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGTACCCAAGACTGCCGAAA................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTACCCAAGACTGCCGAAAATT.............2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTGGTACCCA............................2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTGGTACCCAAG..........................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCCAAGACTGCCGA..................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATGTGGTACCCAAGACTG......................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCGATGTGGTACCCAAGA.........................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAAGACTGCCGAAAATTTCC..........2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTGGTACCCAAG..........................2411.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGACTGCCGAAAATTTCCGTG.......2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTGGC.................................1930.3310010000000
droPer2
TCTCTGTGTGTGTGTGTGTGTGTGTG--------------------TGTG-------------------------------------------------------------------------------------------------------TAACCGG-GGTTCC------------T--------------------------------------------------GCTCCATTTATTATTTATGTGCATTTTGATGT--G------GA--------------------AAGCATTTTCATGTTTTTTTCTTTATTTTCCTTTCCCTTTTTTGGTTCATTTGTTTTGGTAAATATTTGTGCT--------------------------------TCTCCTTCTCCTCCTCTATTT---------------------------------TTTTTTG-------------------------------G-----TGGTTTTGGTTTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TATAGTTTTAAACATATGTATGTA------------------------------TTTA------------TTCTTG---------------------------------------------------------------------------------------------------------------------------------------------------TATATATG-------TGTTATTAATGGATATATGTATAT--A------TG--------------------TA-GCTGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------C-ACAATATGTTC---ATTTCGTAATACATTTTTTTTTTTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATAGTTTTAAACATATGTATGTA------------------------------TTTA------------TTCTCGTA-------------------------------------------------------------------------------------------------------------------------------------------TAGATATATATATG-------TGTTATTAATGGATATATGTATAT--A------TG--------------------TA-GCTGCCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA-ATATGTTCATTTSizeHit CountTotal NormTotal
No Reads
droKik1
CCTCTCTCTATATATGGTAGTATACGGTATATTTGGCAT--------------------------------------------------ATATATATATA------------------------------------TGTA-----------------------------------------------------------------------------------TATATATGTTCGATT------TACTAGGTATATAAATAT--ATTTGTAAATATATTTGTTT--CTTGGCAG---T----------------TTTCGATTAAAATT----------------------------------------------------------------------CTTCAAATGTTCTTTTTGGTGGCCTT--------CCTTTGTT----------CTGCATTGGCTGTGCTCCTGGCTCGTGCTC-----------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTTTCAGCTGCGCTCCGATGTCGTGCCCAAGACCGCCGAGAACTTCCGTGCGCTGTGSizeHit CountTotal NormTotal
No Reads
droEle1
ATTTTATTATTTTTTATTT----------------------------------------------------------------------------------------------------------------------------------TGTACTAATTAAAATTTC------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATTT----GATTGCCTCTTTTAGCTGCGCTCCGACGTCGTGCCTAAGACCGCCGAGAACTTCCGCGCCTTGTGSizeHit CountTotal NormTotal
No Reads
droRho1
GATTTCTGTGCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----GATTGTCCTTTCCAGCTGCGCTCCGACGTCGTGCCTAAGACCGCCGAGAACTTCCGCGCCTTGTGSizeHit CountTotal NormTotal
No Reads
droBia1
AATATG--------------------------------------------------------------------------------------------------------------------------------------ATTTCCCCGTTTACTAATTG-CCTTTC------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--CCCTT----TGTTGCATCTTCCAGCTGCGCTCCGACGTTGTGCCCAAGACCGCCGAGAACTTCCGCGCCTTGTGSizeHit CountTotal NormTotal
No Reads
droTak1
TTCCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCAGCTGCGCTCCGACGTTGTGCCCAAGACCGCCGAGAACTTCCGCGCCTTGTGSizeHit CountTotal NormTotal
No Reads
droEug1
TATGTATGTATGTATATAAT---AAA--------------------TTT-------------------------------------------------------------------------------------------ATTTACTTTATTATTATTAT-ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCCACCTCATCTCTAATC---------------------------------GTTTTTACTTTGTTTAGTTGCTGCGGTTGCGTTTTTTGTTGTTGTTTTTTTTTGGTTSizeHit CountTotal NormTotal
No Reads
dm3
TATCTATCTATATATCTATCTATATA--------------------TCTA--------------------TCTATC--T---AT-----CTATCT----ATCTATCTATCTATCTATCTAT----------CTATC----------------------------------------------------------------------------------TATC-TATCTAT------------------------------CT--A--TCTATCTATCTATCTATCTATCTATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTATCTATATATCTATCTATCTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATCTATATATCTATCTATCT..2490.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCTATCTATATA--------------------TCTA--------------------TCTATC--T---...........................................................................................................................................................................................................................................................................................................................................................................................................................................2490.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CTAT----------CTATC----------------------------------------------------------------------------------TATC-TATCTAT------------------------------C........................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................T----ATCTATCTATCTATCTAT........................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATTTTTGTTAGTATT----------------------------------------------------------------------------------------------------------------------------AATTTCTTGTTTACTAACGG-AGTTCC------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTTTT----GTTTGTATTTTGCAGCTGCGCTCCGATGTCGTTCCCAAGACAGCCGAGAACTTCCGCGCCTTGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTCCGCGCCT....28130.00300001001019000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTCCGCGCC.....27114.001400000086000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCAAGACAGCCGAGAACTTCCGC........26113.001300000047200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTTCCGC........25112.001200000038010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTTCCGCGC......27111.001100000017300000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTCCGCGC......2615.00500000004100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAGCCGAGAACTTCCGCGCCT....2615.00510200010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTT................................2014.00400020002000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTTCCGCGCC.....2813.00300000011100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTCCGC........2413.00300000020100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTTC...............................2113.00301100000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGACAGCCGAGAACTTCCGCGCCT....2713.00300000003000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTTC...........2213.00300000011010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAGCCGAGAACTTCC..........2012.00200000001001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTCGTTCCCAAGACAGCCGAGA................2812.00200000001100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTTC...............................1912.00202000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCCAAGACAGCCGAGAACTTCCGC........2812.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTTCCCAAGA.........................1612.00200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTTCCGCGCCT....2912.00200000011000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTC...........2112.00200000002000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGA................1712.00200000000200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTCCCAAGACAGCCGAGAAC..............2512.00200000001000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTCCGATGTCGTT................................1611.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTTCCG.........2411.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTCCCAAGACAGCCGAGAACAA............2711.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCCGAGAACTT............1611.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTTCCCAAGACAGCC....................2111.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAACTTCCGCGCCTT...1711.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTCGTTCCCAAGACAGA.....................2811.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCCGAGAACTTCCGCGCC.....2411.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTTCCGCGCCTT...3011.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGAACTTCCGCGCC.....1811.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTCCCAAGACAGCCGAGAAC..............2411.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAACTTCCGCGCCT....1611.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTCC..........2211.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACTT............2111.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCCGAGAACTT............1511.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCAAGACAGCCGAGAACTTC...........2411.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAAC..............1911.00100000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAACTTCCGCGCC.....1611.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAA...............1811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGAACTTCCGCGCC.....1711.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTTCCCAAGACAGCCGAGAACT.............2711.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAAGACAGCCGAGAACT.............2011.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTTCCCA............................2411.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTCGTTCCCA............................1611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCAAGACAGCCGAGAAC..............2111.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCCAAGACAGCCGAGAACTTCCGCG.......2911.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTTCCCAAGA.........................1511.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTCCCAAGACAGCCGAGAACT.............2611.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCCAAGACAGCCGAGAACTTCCGCGC......3011.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTCGTTCCCAAGACAGCCGA..................2611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCCAAGACAGCCGAGAACTTC...........2511.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCCGAGAACTTCCGCGCCT....2511.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTT...........2111.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTT................................1911.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTTC...............................2011.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTTCCCAAGAC........................1811.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGACAGCCGAGAACTTCCGCGCCC....2711.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCCGAGAACTTCC..........1911.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCCGAGAAC..............1511.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTTCCCAAGACAGCCGAGAACT.............2911.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCGAGAACTTCCG.........1711.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTTCCCAAGACAGCCGA..................2311.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTT............2011.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCCAAGACAGCCGAGAACTTCCG.........2711.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACT.............1911.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTCGTTCCCAAGACAGC.....................2311.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCCGAGAACT.............1511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCCCAAGACAGCCGAGAACTTC...........2611.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTTCCCAAGACAGCCGA..................2411.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCCCAAGACAGCC....................1611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTCGTTCCCAAGACAGCCGAG.................2711.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCCGAGAACTTCCGCGCCT....2411.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTTCCCAAGACAGCCGAGAACT.............2811.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCCGAGAACTTCCGC........2111.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAGCCGAGAAC..............1611.00100000001000000000
.....TTGTTAGTATT----------------------------------------------------------------------------------------------------------------------------AATT.............................................................................................................................................................................................................................................................................................................................................................................1540.50200000000002000000
....TTTGTTAGTATT----------------------------------------------------------------------------------------------------------------------------AATT.............................................................................................................................................................................................................................................................................................................................................................................1630.33100000000001000000
droSec2
TATTTTTGTTAGTATT----------------------------------------------------------------------------------------------------------------------------AATTTCTTGTTTACTAACGG-AGTTCC------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTTTT----GTTTGTATTTTGCAGCTGCGCTCCGATGTCGTTCCCAAGACAGCCGAGAACTTCCGCGCCTTGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTT................................2014.0042020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTATTTTGCAGCTGCG.............................................2012.0020002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCAAGACAGCCGAGAACTT............2312.0021010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAACTTCC..........2212.0020101
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACAGCCGAGAAC..............1812.0020020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTTCCCAAGACAGCCGA..................2412.0021010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTTC...............................2112.0020110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTTCCCAAGA.........................2711.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTTCCCAAG..........................2611.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTCCCAAGACAGCCGAGAACTT............2711.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTTCCCAAGACA.......................2911.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGACAGCCGAGAACTTCCGCGCCT....2711.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCAAGACAGCCGAGAACT.............2211.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTTCCCAAGACAGCCGAGA................2411.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTTCCCAAGA.........................2511.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTCGTTCCCAAGACAGC.....................2811.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTT................................1911.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGCCGAGAACTTCCGCGC......2211.0010001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTTCCC.............................2211.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTTCCCAAGACAGCCGAG.................2411.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTCCCAAGACAGCCGA..................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTT................................1811.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTCGTTCCCAAGACA.......................2611.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCCGAGAACTTCCGC........2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCAAGACAGCCGAG.................1811.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCCCAAGACAGCCGAGAACTTC...........2611.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTTCCCAAGACAGCCGA..................2311.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCG..................................1811.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTTCCCAAGAC........................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTTCCCAAG..........................2411.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGAACTTCCGCGCCTTGTG2211.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGATGTCGTTCCCAAGACAGCCG...................2711.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTTCCCAAGACAGCC....................2211.0011000
droYak3
TTTGTTTGTGTATTTTGCCAATATT-------------------------------------------------------------------------------------------------------------------AATTTCTTATTTACTAACCC-AGTTTT------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--ATATT----GTTTGCCTTTTGCAGCTGCGCTCCGATGTCGTGCCTAAGACCGCCGAGAACTTCCGCGCCTTGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGACCGCCGAGAACTTCCGCGCCT....26126.0026000000000026
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTCGTGCCTAAGACCGCCGAGAACT.............3017.00700000000007
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTGCCTAAGACC.......................2914.00400000000004
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTCGTGCCTAAGACC.......................2614.00400400000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCGCCGAGAACTTCCGCGCCTT...2514.00400000000004
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGCCTAAGACCGCCGAGAACT.............2613.00300300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGACCGCCGAGAACTTCCGCGCC.....2512.00200200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGAACTTCCGCGCCTTGT.2212.00202000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTGCCTAAGACCGCCGAGA................2512.00220000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGCCTA............................2312.00200100010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTCGTGCCTAAGACCGC.....................2212.00210100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTCGTGCCTAAGACCGCC....................2312.00200110000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGCCTAA...........................2412.00202000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTG................................2012.00201000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTGCCTAAGACCGCCGA..................2412.00201000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTGCCTA............................2411.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGCCTAAGACC.......................2811.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTCGTGCCTAAGACCGCC....................2411.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCGCCGAGAACTTCCGCGCCT....2511.00110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTCGTGCCTAAGACCGCC....................2911.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTCGTGCCT.............................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTCGTGCCTAAGACC.......................2011.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGATGTCGTGCCTAAGACCGCCG...................2711.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGCCTAAGACCGC.....................3011.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTGCCTAAG..........................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGACCGCCGAGAACTTCCGCGC......2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTCCGATGTCGTGCCTA............................2111.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGCC..............................2111.00110000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAGACCGCCGAGAACT.............1911.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGTGCCTAAGACCGCCGA..................2211.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGC...............................2011.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGATGTCGTGCCTAAGACCGCC....................2511.00100010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGATGTCGTGCCTAAGACC.......................2311.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGACCGCCGAGAACTTCC..........2111.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGCCTAAGACCGCCGAGA................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTGCCTA............................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGCCTAAGA.........................2611.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTGCCTAAGACC.......................2711.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGAACTTCCGCGCCTTGTG2311.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGTCGTGCCTAAGACCGCCGA..................2511.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCCGATGTCGTGCCTAAGACCGCC....................3011.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTGCCTAAGACCGCC....................2211.00100010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCGCCGAGAACTTCCGCGC......2311.00100000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGT.................................1911.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCGTGCCTAAGACC.......................1911.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCGCCGAGAACTTCCGCGCCT....2411.00110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCTCCGATGTCGTGCCTAAGAC........................2711.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGACCGCCGAGAACTTCCGCGCC.....2611.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAGAACTTCCGCGCCTT...2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCTCCGATGTCGTGCC..............................2211.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGTCGTGCCTAAGACCGCCGAG.................2711.00100010000000
droEre2
TATGTATGCATGTATGTATGTATGTA--------------------TGTA--------------------TGTATG--T---AT-----GTATGT----ATGTATGTATGTATGTATGTAT----------GTATG-------------------------------------------------------------------------------------------------------------TAT------GTATGTAT--GTATGTATGTATGTATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTATGTATGTAGTAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................TGTA--------------------TGTA--------------------TGTATG--T---AT-----GTAT................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3577000000
.....................................................................................................................................................................................................................................................TAT------GTATGTAT--GTATGTATG............................................................................................................................................................................................................................................20200.1533000000
.....................................................................................................GTATGTATGTATGTATGTAT----------GT........................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000
..................TGTATGTA--------------------TGTA--------------------TGTATG--T---AT-----G...................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000

Generated: 05/16/2015 at 10:05 PM