dvi_12843

Name	Class	Family	Strand
(CATG)n	Simple_repeat	Simple_repeat	+
Gypsy6-I_Dmoj-int	LTR	Gypsy	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGAACGGCACCAGCAAATTTGATGTGCCCGAGATCGAATTGATCATTAAGGTGAGTTATTTAGACAAACAAGCATGCATATGCATGCAAGCATACATACATACATACATATGTACATGCTAAGATAGTGTTAGATTTCTATATGCGCGCTTTGCAAATTTTCAATGCATTATTAAAGTGAAAATGCTGTTGTGTCGCAAATAAATGCACAAGGCACAGACAACTTCTTTATTGTACACCTTTTTGCTTATC ************************************************...((..((((.((((.....((((((....)))))).(((((...((((((......)))))).))))).......))))))))..))...(((((((...(((..((((((..............)))))))))....))).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	GSM1528803 follicle cells	SRR060660 Argentina_ovaries_total	M061 embryo	SRR060664 9_males_carcasses_total	SRR060681 Argx9_testes_total	V047 embryo	V116 male body	M027 male body	SRR060685 9xArg_0-2h_embryos_total
...............AATTTGATGTGCCCGAGATCGAATTGAT................................................................................................................................................................................................................	28	0	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................GTACATGCTAAGATAGTGTTA.......................................................................................................................	21	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0
................AGTTGATGTGCCCGAGATCGAATTGAT................................................................................................................................................................................................................	27	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................CGAATTGATCATTAAGGTGAGT...................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........CAGCAAATTTGATGTGCCCGAGAT.........................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........ACCAGCAAATTTGATGTGCCCGAG...........................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................TTGATGTGCCCGAGATCGA......................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................CTTGATGTGCCCGAGATCGAATTGATCA..............................................................................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................ATGTGCCCGAGATCGAATTG..................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............AATTTGATGTGCCCGAGATCGA......................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................ATGTGCCCGAGATCGAATTGAT................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................ACGAACAAGGCCCAGACAAC............................	20	3	11	0.09	1	0	0	0	0	0	0	0	0	1	0
...................................GAATTGATCATTAAGGCCT.....................................................................................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	0	0	0	0	1

GCTTGCCGTGGTCGTTTAAACTACACGGGCTCTAGCTTAACTAGTAATTCCACTCAATAAATCTGTTTGTTCGTACGTATACGTACGTTCGTATGTATGTATGTATGTATACATGTACGATTCTATCACAATCTAAAGATATACGCGCGAAACGTTTAAAAGTTACGTAATAATTTCACTTTTACGACAACACAGCGTTTATTTACGTGTTCCGTGTCTGTTGAAGAAATAACATGTGGAAAAACGAATAG ************************************************...((..((((.((((.....((((((....)))))).(((((...((((((......)))))).))))).......))))))))..))...(((((((...(((..((((((..............)))))))))....))).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060676 9xArg_ovaries_total	SRR060681 Argx9_testes_total	V053 head	V047 embryo	SRR060668 160x9_males_carcasses_total	SRR060678 9x140_testes_total
GCTTGCCGTGGTCGTTTAAAC......................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.......................CACGGGCTCTAGCTTAACTAG...............................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
...TGCCGTGGTCGTTTAAACTA....................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0
.................................AAATTAACTAGTAATTCCACT.....................................................................................................................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................CGGTTCTATCATAATCTA....................................................................................................................	18	2	6	0.17	1	0	0	0	0	1	0	0
...................................................................................................TATGTATGAAGACATGTACGGT..................................................................................................................................	22	3	6	0.17	1	0	0	0	1	0	0	0
...................................................................................................GATGTATGTAGACATGTAGGAT..................................................................................................................................	22	3	8	0.13	1	0	0	0	1	0	0	0
.......................................................................................................................TTTCTATCGCAATCTAAA..................................................................................................................	18	2	17	0.06	1	0	0	0	0	1	0	0
..........................................................................................GTATGTATGTATGTATGTATA............................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	1
....................................................................................................................................................................................................................CGCGTATGTCGAAGAAATA....................	19	3	20	0.05	1	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:1974773-1975023 +	dvi_12843	CGAACGGCACCAGCAAATTTGATGTGCCCGAGATCGAATTGATCATTAAGGTGAGT-TAT--------TTAGACAAA---------------------CAAGCAT-------------------------------------------GCATATG---------------C--ATGCAAGCATACATACATACATACATATGTACATGCTAAGATAG-----------------------------------T--------------------------GTT-AGATTTCTATATGCGCGCTT----------TGCAAATTTTCAATGCATTATTAAAGTGAAAATGCTGTTG------TGTC-GCAAATAA---ATGCACA---------AGG------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------------------C----AGACAACTT---CTT---T------ATTGTACACCTTTTTGCTTATC
droMoj3	scaffold_6359:3183546-3183802 +		CGAACGGCACCAGCAAATATGATGTGCCCGAGATCGAATTGATCATTAAGGTGGGT-TAC--------TTAGCCAACCACAT---------GCAATAACAGACAT-------------------------------------------GTACA----CAT---------GC--ATGCACATATTTATACATATGTATGTATGT--------ATATAT--------------------------------------------------GCTTGTATT---TCGCAGATTTCAATATGCGCGCTT----------TGCAAATTTTCAGTACATCCAAAAAGTGAAAATTATGTTGTTATTGTGTT-GCAAATAACAGAATCA-------------G------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------------------C----AGACACCTTGTGCTT--------------------------CTTCTC
droGri2	scaffold_15081:1688451-1688788 +		CTAACGGTACCAGCAAATTTGATGTGCCCGAGATCGAATTGATCATCAAGGTGGGT-TAA------CA-------------------------------------------------------------------CTGTGCCATACACACACACACACA--CACAACATGC--ATAACCATATTCATTCATATT--CATATGCATCTGC--ATTTGT--------------------------------------------------------ATTTGTGTT-AAATTTCTTTATGCGCGCTT---------TTGCTAATTTTCCGTGCATCAACAAAGTGAAAATGCTGCTGTT-TTGAGTT-GCAAATAA---C----------------------------------------------------------------------------------------TCTGC---------------------------------------------------TCACACAGCACAACACACACACGCCACACACACACACACATGTGTGTGTGTAGTACACACTGAGACACACATTCTTCTTCTTCTGAGTCGTTCCTCATC-TTTTGTTTGTC
droWil2	scf2_1100000004590:2488654-2488861 +		--GCCTACACATACATAC-----------------------------------------------------------------------------------------ATACATATATGTATATATA--------------------------------------------------CATATATATATATATATATATATATAT--------ATATAT--------------------------------------------------AT----------ATAT----ATCTGTCAATGTGCTT---------CGGCAATTTCATTATTCATCAT-----------------------------------------------------------------------------------------------------------------TCTGTTTCATCATTTTAATCAATTATCATTTAAATACTCAAGTCACAACAGTTAACAGTTCTTTAGAAATTGTTT---------CA----AAAATGTT---------------------------------------------------------------------------TTTAGTTCATT
dp5	XL_group1e:6506857-6507066 +		CAAACGGCAGCAGCAAATTCGATGTTCCCGAGATAGAACTGATCATCAAGGTGGGT-TTT------CC-------------------------------------------------------------------TTTGGTCATATTTGCATATATGCA--TGCAC---TCAT--------------------------GTGTATGTGTTTAGCTGG---------------------------------------------------------------------------G-TTGGCTTTT--------------C-ATTTCCATGC---CACAAAGTGAAAATGCAGCGC------TGTCA-GCGGC---AGCGTC----------------------------------------------------------------------------------GGCGTCGC---------------------------------------------------GTCTACGCCATCA----CAAATGCAAAAAGCA---------------------------C--------AAA----------------------------------------
droPer2	scaffold_21:1515401-1515558 +		CAAACGGCAGCAGCAAATTCGATGTTCCCGAGATAGAACTGATCATCAAGGTGGGT-TTT------CC-------------------------------------------------------------------TTTGGTCATATTTGCATACATGCA--TGCAC---TCAT--------------------------GTGTATGTGTTTAGCTGG---------------------------------------------------------------------------G-TTGGCTTTT--------------A-ATTTCCATGC---CACAAAGTGAAAATGCAGCGC------TGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13047:1046321-1046450 -		CCAACGGCACCAGCAAATTCGATGTGCCCGAAATCGAGCTGATCATAAAGGTAAGCG-GAAAAGTT--------GGAAAACTGGGAAAAGTGCAACAACAAACATACATACGTATGT-TGTATGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAA-ATGTGTATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396575:389768-389964 +		CCAACGGCACTAGCAAATTCGATGTGCCCGAAATCGAGTTGATCATAAAGGTAAGCG-GAAAAGTT--------GGAAAAATG----CAA--------CAAATATACATACATA----------TA------CATAA---------ATGCATATGTATGTATGC-----------------------------------------------AAA--AATCTACTTTGCATCTACACACCTACATGCAGACAGT--------------------------GTATGGGTGTGCGT-GCGGCTTTG----------CGAAA-ATTTCCATGC------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302517:813698-814016 -		--AACGGAGGCAGCAAATTCGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGG-AAA--AGTC-----GAAAAA---------------------AAAATATACATATCCATAC-TGCA----TACATATATTGCGGTACGTTTTGCATACACACA--ATCGC---TTGT--------------------------GTGA------------------------------------------------GTGTGTGAGTGTGTGTGT----------GTGTGGTTTTCCAT-TTCGCTCTG----------CGCAA-ATTTCCATGC------AGAGTGAAAATGCAGC----------------------AGAAGCAAAAGCAAACAAAGCCAGCGGGCAATAACAATAAACCTGGAAGAAAAAACACACACACGAACTGCTGTTCTGCCTCCTCCTCGCCTTCGC-------------------------------------------------------------------------------------------------------------------------CTTT--------------------------GCCTGCTTCTT
droFic1	scf7180000454073:1248820-1249001 +		--AACGGTACCAGTAAATTCGATGTGCCCGAGATAGAACTGATCATAAAGGTAAGCG-AA--------TTA----------------CAG--------C---------------------------------GAATATGGCAAAATTTGCATATGTACAT---------ACCT--------------------------GC------------------------------------------------------------------------------ACATCGTTTTCCAT-TTCGCTCTG----------CGCAA-ATTTTCATGC------AGAGTGAAAATGCAGCA----------------------------AAAGCAAACAAAGGC-------AAAA-------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------C----AAGCAACT---------------------------------------
droEle1	scf7180000490214:15271-15424 -		--AATGGAACCAGTAAATTCGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGCG-AA------T---A----------------TAG--------C---------------------------------GAACATAGCGAAATTTGCATATGTACATATGCAA---ACCT--------------------------GT------------------------------------------------------------------------------GCAGAGTTTCCCAT-TTCGCTTTG----------CGCAA-ATGTCCATGC------AAAGTGAAAATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777033:49434-49587 +		CAAATGGAACCAGTAAATTTGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGCG-TA------T---A----------------TAG--------C---------------------------------GAGCATAGCGAAATTTGCATATGTACA--TGCAT---ACCT--------------------------CT------------------------------------------------------------------------------GCAGAGTTTCCCAT-TTCGCTTTG----------CGCAA-ATGTCCATGC------AAAGTGAAAATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302041:752614-752695 -		--AACGGG---AGCAAGTTCGACGTGCCCGAGATAGAGCTGATCATAAAGGTAAAT-TCG------A----------------------------------------------------------------------CTTCGAAATCTGCATACC--CAT---------ACCT----------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414562:433512-433731 +		--AACGGGTCCAGTAAATTCGACGTGCCCGAGATAGAACTGATCATAAAGGTGAGC-TATCGAACT--------GAAATATCCAATTCGG--------TGAATATATCCATATA----------TC---------CATGGCGAAATTTGCATACC--CAT---------ACCT----------------------------------------------------------------------------------------------------------GCGCACTTTCCCGT-TTCGCTCTGTTCTGCGTTCTGCAAAATTTCCATGC------AGAGTGAAAATGCAGTTA------AAGC----------AAAAGCAAAAGCAAACAAAGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC----------------------------------------
droEug1	scf7180000409008:140162-140350 -		--AACGGTACCAGTAAATTTGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGTA-AAAA----------------------------------------TATTCA------------CA----TACATATATTATAGCAAAATTTGCATACT-----------------T----------------------------------------------------------------------------------------------------------GCACAGTTTTCCAT-TTCGCTCTG----------CGCAAAATTTCCATGC------AGAGTGAAAATGCAGTTA------AGGCA-AAAGC---AAAAGCAAATGCAAACAAAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC----------------------------------------
dm3	chrX:13715834-13716005 -		--AACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAGCG-AA-----------------------------------------------------------------------------CAGCGACATTTGCATACC-----------------C--------------------------C--------------------------------------------------------------------------------TGCAGTTTTCCAT-TTCGCTCTG----------CGCAA-ATTTCCGTGC------AGAGTGAAAATGCAGCCG------GGGCA-AAAGC---AGAAGCAAATGCAAACAAAGGC-------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA-----------------------------------------
droSim2	node_24415:18563-18615 +		--AACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_20:363165-363217 -		--AACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	X:8007542-8007594 -		--AACGGCACCAGCAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:13169856-13169908 +		--AACGGCACCAGCAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CGAACGGCACCAGCAAATTTGATGTGCCCGAGATCGAATTGATCATTAAGGTGAGT-TAT--------TTAGACAAA---------------------CAAGCAT-------------------------------------------GCATATG---------------C--ATGCAAGCATACATACATACATACATATGTACATGCTAAGATAG-----------------------------------T--------------------------GTT-AGATTTCTATATGCGCGCTT----------TGCAAATTTTCAATGCATTATTAAAGTGAAAATGCTGTTG------TGTC-GCAAATAA---ATGCACA---------AGG------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------------------C----AGACAACTT---CTT---T------ATTGTACACCTTTTTGCTTATC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............AATTTGATGTGCCCGAGATCGAATTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
.........................................................................................................................................................................................................GTACATGCTAAGATAG-----------------------------------T--------------------------GTT-A...........................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CGAATTGATCATTAAGGTGAGT-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........CAGCAAATTTGATGTGCCCGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACCAGCAAATTTGATGTGCCCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTGATGTGCCCGAGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATGTGCCCGAGATCGAATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............AATTTGATGTGCCCGAGATCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATGTGCCCGAGATCGAATTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GAATTGATCATTAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGAACGGCACCAGCAAATATGATGTGCCCGAGATCGAATTGATCATTAAGGTGGGT-TAC--------TTAGCCAACCACAT---------GCAATAACAGACAT-------------------------------------------GTACA----CAT---------GC--ATGCACATATTTATACATATGTATGTATGT--------ATATAT--------------------------------------------------GCTTGTATT---TCGCAGATTTCAATATGCGCGCTT----------TGCAAATTTTCAGTACATCCAAAAAGTGAAAATTATGTTGTTATTGTGTT-GCAAATAACAGAATCA-------------G------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------------------C----AGACACCTTGTGCTT--------------------------CTTCTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........CAGCAAATATGATGTGCCCGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.................TATGATGTGCCCGAGATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................ATATGATGTGCCCGAGATCGAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................TGTGCCCGAGATCGAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TTCAGTACATCCAAAAAGT...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............AATATGATGTGCCCGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............AATATGATGTGCCCGAGATCGAATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................CGAATTGATCATTAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.50	3	2	0	0	0	0	1
...................................GAATTGATCATTAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

CTAACGGTACCAGCAAATTTGATGTGCCCGAGATCGAATTGATCATCAAGGTGGGT-TAA------CA-------------------------------------------------------------------CTGTGCCATACACACACACACACA--CACAACATGC--ATAACCATATTCATTCATATT--CATATGCATCTGC--ATTTGT--------------------------------------------------------ATTTGTGTT-AAATTTCTTTATGCGCGCTT---------TTGCTAATTTTCCGTGCATCAACAAAGTGAAAATGCTGCTGTT-TTGAGTT-GCAAATAA---C----------------------------------------------------------------------------------------TCTGC---------------------------------------------------TCACACAGCACAACACACACACGCCACACACACACACACATGTGTGTGTGTAGTACACACTGAGACACACATTCTTCTTCTTCTGAGTCGTTCCTCATC-TTTTGTTTGTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................ATGTGCCCGAGATCGAATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
CTAACGGTACCAGCAAATTTGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1

droWil2

--GCCTACACATACATAC-----------------------------------------------------------------------------------------ATACATATATGTATATATA--------------------------------------------------CATATATATATATATATATATATATAT--------ATATAT--------------------------------------------------AT----------ATAT----ATCTGTCAATGTGCTT---------CGGCAATTTCATTATTCATCAT-----------------------------------------------------------------------------------------------------------------TCTGTTTCATCATTTTAATCAATTATCATTTAAATACTCAAGTCACAACAGTTAACAGTTCTTTAGAAATTGTTT---------CA----AAAATGTT---------------------------------------------------------------------------TTTAGTTCATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

CAAACGGCAGCAGCAAATTCGATGTTCCCGAGATAGAACTGATCATCAAGGTGGGT-TTT------CC-------------------------------------------------------------------TTTGGTCATATTTGCATATATGCA--TGCAC---TCAT--------------------------GTGTATGTGTTTAGCTGG---------------------------------------------------------------------------G-TTGGCTTTT--------------C-ATTTCCATGC---CACAAAGTGAAAATGCAGCGC------TGTCA-GCGGC---AGCGTC----------------------------------------------------------------------------------GGCGTCGC---------------------------------------------------GTCTACGCCATCA----CAAATGCAAAAAGCA---------------------------C--------AAA----------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........AGCAAATTCGATGTTCCCGAGATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...........AGCAAATTCGATGTTCCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0
....................GATGTTCCCGAGATAGAACTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................TTCCCGAGATAGAACTGATCATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.................TTCGATGTTCCCGAGATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............AAATTCGATGTTCCCGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................ATGTTCCCGAGATAGAACTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............AAATTCGATGTTCCCGAGATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................TTCGATGTTCCCGAGATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.AAACGGCAGCAGCAAATTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TCCCGAGATAGAACTGATCATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TCCCGAGATAGAACTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GCAGCAAATTCGATGTTCCCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAAACGGCAGCAGCAAATTCGATGTTCCCGAGATAGAACTGATCATCAAGGTGGGT-TTT------CC-------------------------------------------------------------------TTTGGTCATATTTGCATACATGCA--TGCAC---TCAT--------------------------GTGTATGTGTTTAGCTGG---------------------------------------------------------------------------G-TTGGCTTTT--------------A-ATTTCCATGC---CACAAAGTGAAAATGCAGCGC------TGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................GTTCCCGAGATAGAACTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..............................AGATAGAACTGATCATCAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
...............................GATAGAACTGATCATCAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................CGAGATAGAACTGATCATCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................GATAGAACTGATCATCAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................ATAGAACTGATCATCAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0
.................................TAGAACTGATCATCAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0
...................................GAACTGATCATCAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	13	0.15	2	2	0	0	0	0	0

droAna3

CCAACGGCACCAGCAAATTCGATGTGCCCGAAATCGAGCTGATCATAAAGGTAAGCG-GAAAAGTT--------GGAAAACTGGGAAAAGTGCAACAACAAACATACATACGTATGT-TGTATGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAA-ATGTGTATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................AATCGAGCTGATCATAAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0
..................................CGAGCTGATCATAAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
........ACCAGCAAATTCGATGTGCCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............AAATTCGATGTGCCCGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....................GATGTGCCCGAAATCGAGCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.............................GAAATCGAGCTGATCATAAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........AGCAAATTCGATGTGCCCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................ATTCGATGTGCCCGAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................GCCCGAAATCGAGCTGATCATAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................ATCGAGCTGATCATAAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

droBip1

CCAACGGCACTAGCAAATTCGATGTGCCCGAAATCGAGTTGATCATAAAGGTAAGCG-GAAAAGTT--------GGAAAAATG----CAA--------CAAATATACATACATA----------TA------CATAA---------ATGCATATGTATGTATGC-----------------------------------------------AAA--AATCTACTTTGCATCTACACACCTACATGCAGACAGT--------------------------GTATGGGTGTGCGT-GCGGCTTTG----------CGAAA-ATTTCCATGC------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

--AACGGAGGCAGCAAATTCGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGG-AAA--AGTC-----GAAAAA---------------------AAAATATACATATCCATAC-TGCA----TACATATATTGCGGTACGTTTTGCATACACACA--ATCGC---TTGT--------------------------GTGA------------------------------------------------GTGTGTGAGTGTGTGTGT----------GTGTGGTTTTCCAT-TTCGCTCTG----------CGCAA-ATTTCCATGC------AGAGTGAAAATGCAGC----------------------AGAAGCAAAAGCAAACAAAGCCAGCGGGCAATAACAATAAACCTGGAAGAAAAAACACACACACGAACTGCTGTTCTGCCTCCTCCTCGCCTTCGC-------------------------------------------------------------------------------------------------------------------------CTTT--------------------------GCCTGCTTCTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

--AACGGTACCAGTAAATTCGATGTGCCCGAGATAGAACTGATCATAAAGGTAAGCG-AA--------TTA----------------CAG--------C---------------------------------GAATATGGCAAAATTTGCATATGTACAT---------ACCT--------------------------GC------------------------------------------------------------------------------ACATCGTTTTCCAT-TTCGCTCTG----------CGCAA-ATTTTCATGC------AGAGTGAAAATGCAGCA----------------------------AAAGCAAACAAAGGC-------AAAA-------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------C----AAGCAACT---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--AATGGAACCAGTAAATTCGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGCG-AA------T---A----------------TAG--------C---------------------------------GAACATAGCGAAATTTGCATATGTACATATGCAA---ACCT--------------------------GT------------------------------------------------------------------------------GCAGAGTTTCCCAT-TTCGCTTTG----------CGCAA-ATGTCCATGC------AAAGTGAAAATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAATGGAACCAGTAAATTTGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGCG-TA------T---A----------------TAG--------C---------------------------------GAGCATAGCGAAATTTGCATATGTACA--TGCAT---ACCT--------------------------CT------------------------------------------------------------------------------GCAGAGTTTCCCAT-TTCGCTTTG----------CGCAA-ATGTCCATGC------AAAGTGAAAATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

--AACGGG---AGCAAGTTCGACGTGCCCGAGATAGAGCTGATCATAAAGGTAAAT-TCG------A----------------------------------------------------------------------CTTCGAAATCTGCATACC--CAT---------ACCT----------------------------------------------------------------------------------------------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

--AACGGGTCCAGTAAATTCGACGTGCCCGAGATAGAACTGATCATAAAGGTGAGC-TATCGAACT--------GAAATATCCAATTCGG--------TGAATATATCCATATA----------TC---------CATGGCGAAATTTGCATACC--CAT---------ACCT----------------------------------------------------------------------------------------------------------GCGCACTTTCCCGT-TTCGCTCTGTTCTGCGTTCTGCAAAATTTCCATGC------AGAGTGAAAATGCAGTTA------AAGC----------AAAAGCAAAAGCAAACAAAGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

--AACGGTACCAGTAAATTTGATGTGCCCGAGATAGAACTGATCATAAAGGTGAGTA-AAAA----------------------------------------TATTCA------------CA----TACATATATTATAGCAAAATTTGCATACT-----------------T----------------------------------------------------------------------------------------------------------GCACAGTTTTCCAT-TTCGCTCTG----------CGCAAAATTTCCATGC------AGAGTGAAAATGCAGTTA------AGGCA-AAAGC---AAAAGCAAATGCAAACAAAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

--AACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAGCG-AA-----------------------------------------------------------------------------CAGCGACATTTGCATACC-----------------C--------------------------C--------------------------------------------------------------------------------TGCAGTTTTCCAT-TTCGCTCTG----------CGCAA-ATTTCCGTGC------AGAGTGAAAATGCAGCCG------GGGCA-AAAGC---AGAAGCAAATGCAAACAAAGGC-------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA-----------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............AATTCGATGTGCCCGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ATAGAATTGATCATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCAGTAAATTCGATGTGCCCGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................CGATGTGCCCGAGATAGAATTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AAAGGTGAGCG-AA-----------------------------------------------------------------------------CAGCGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AACGGCAGCAGTAAATTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GCAGCAGTAAATTCGATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GAATTGATCATAAAGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

--AACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................ATAGAATTGATCATAAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCAGTAAATTCGATGTGCCCGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGCAGTAAATTCGATGTGCCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GAGATAGAATTGATCATAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............GTAAATTCGATGTGCCCGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CCGAGATAGAATTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........AGTAAATTCGATGTGCCCGAGATAGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AGTAAATTCGATGTGCCCGAGATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............GTAAATTCGATGTGCCCGAGATAGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AGAATTGATCATAAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

--AACGGCAGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........AGTAAATTCGATGTGCCCGAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........AGCAGTAAATTCGATGTGCCCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...........AGTAAATTCGATGTGCCCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.................................TAGAATTGATCATAAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0
..................................AGAATTGATCATAAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.25	2	0	1	1	0

droYak3

--AACGGCACCAGCAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................GATAGAATTGATCATAAAGGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................GATAGAATTGATCATAAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................AGAATTGATCATAAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

--AACGGCACCAGCAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................GATAGAATTGATCATAAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
................ATTCGATGTGCCCGAGATAGAATTGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0
.......................GTGCCCGAGATAGAATTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
..................................AGAATTGATCATAAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..................................AGAATTGATCATAAAGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.22	2	0	0	0	0	2	0	0

dvi_12843

scaffold_12970:1974823-1974973 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.6	-31.6	-31.6