ID:

dvi_12832

 Coordinate:

scaffold_12970:1961376-1961519 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0 0.7

Flybase annnotation

CDS [Dvir\GJ19130-cds]; exon [dvir_GLEANR_4016:2]; CDS [Dvir\GJ19130-cds]; exon [dvir_GLEANR_4016:1]; intron [Dvir\GJ19130-in]

Repeatable elements

NameClassFamilyStrand
(TC)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_10322:198295-198318 +
  2. scaffold_12723:1920902-1920925 +
  3. scaffold_12723:4711191-4711214 +
  4. scaffold_12726:2729172-2729195 +
  5. scaffold_12823:1359233-1359256 +
  6. scaffold_12855:1947528-1947551 +
  7. scaffold_12855:3110972-3110995 +
  8. scaffold_12855:5276053-5276076 +
  9. scaffold_12875:4120644-4120667 +
  10. scaffold_12875:16643260-16643283 +
  11. scaffold_12928:692266-692289 +
  12. scaffold_12928:4683559-4683582 +
  13. scaffold_12928:5164585-5164608 +
  14. scaffold_12928:5196480-5196503 +
  15. scaffold_12963:37347-37370 +
  16. scaffold_12963:1092759-1092782 +
  17. scaffold_12963:4031580-4031603 +
  18. scaffold_12970:7692058-7692081 +
  19. scaffold_13047:904676-904699 +
  20. scaffold_13049:11762745-11762768 +
  21. scaffold_10324:774943-774966 +
  22. scaffold_12723:2033902-2033925 +
  23. scaffold_12726:215404-215427 +
  24. scaffold_12823:956194-956217 +
  25. scaffold_12855:5220964-5220987 +
  26. scaffold_12875:8205673-8205696 +
  27. dvi_7049  scaffold_12875:15099218-15099241 +
  28. scaffold_12928:4741713-4741736 +
  29. scaffold_12928:7015717-7015740 +
  30. scaffold_12963:19244869-19244892 +
  31. dvi_12832  scaffold_12970:1961446-1961469 +
  32. scaffold_13003:252-275 +
  33. scaffold_13042:322102-322125 +
  34. scaffold_13042:2936506-2936529 +
  35. scaffold_13047:5090488-5090511 +
  36. scaffold_13047:7402647-7402670 +
  37. scaffold_13047:10592363-10592386 +
  38. scaffold_13049:19618993-19619016 +
  39. scaffold_13246:2573069-2573092 +
  40. scaffold_13324:2744921-2744944 +

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCTATAGCTTCTGCCGCCATTACGAGTACCGGCCGGAGGAGGAACAATGGTGCATTCTTGCCGGCGACCCATTAACTAAACTTCTTAATTGAATTTCTCCCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTGTCTCTGTCTCTCTCCTGCCCTTCCATAGGCAATCGACAGGTCAGCGTGTGGTGACAACTGCAGCCAGTCCACGAACTC
*********************************************************************************...............................................................**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060672
9x160_females_carcasses_total
 M047
female body
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 V047
embryo
 SRR060657
140_testes_total
 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060683
160_testes_total
 SRR060689
160x9_testes_total
 SRR1106719
embryo_8-10h
 SRR060664
9_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 M028
head
 GSM1528803
follicle cells
..................................................................................................................................................................TCCGTCTTTGTCTCTCTCCT.............................................................. 20 2 4 1.75 7 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTGTCTTTGTCTCTCTCCT.............................................................. 20 1 2 1.50 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCGGTCTTTGTCTCTCTCCT.............................................................. 20 2 6 1.17 7 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATCGACAGGTCAGCGTGTGGTGACAAC.................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGGTCAGCGTGTGGTGACAACTGCA................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATCGACAGGTCAGCGTGTGGT.......................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGTGGTGACAACTGCAGCCA............ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................CTTCTTAATTGAATTTCTCCCTCTCTT........................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGCAATCGACAGGTCAGCGTGTGGT.......................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGGTGCATTCTTGCCGGCGAC............................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATCGACAGGTCAGCGTGTG............................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................AAAAGCAATCGACAGGTCAGC................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGACAGGTCAGCGTGTGGTGA........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACAACTGCAGCCAGTCCACGAACT. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATAGCTTCTGCCGCCATTACGAGTA....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGACAACTGCAGCCAGTC......... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................CCGGAGGAGGAACAATGGTGCATTCTTGCC..................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................GGTCAGCGTGTGGTGACA...................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GTCAGCGTGTGGTGACAACTGCAGCCA............ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CAATCGACAGGTCAGCGTGTGGT.......................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTGTCTTTGTCTCTCTCCTA............................................................. 21 2 5 0.80 4 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AGTCTCTGTCTCTCTCCT.............................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTGGCTTTGTCTCTCTCCT.............................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TCGTGCCGGCGACCCATCA......................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTGTGACTGTCTCTCTCCTGT............................................................ 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTGTCTGTGTCTCTCTCCTAC............................................................ 22 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TGGGTCTTTGTCTCTCTCCT.............................................................. 20 3 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CCTTCGTGCCGGCGACGCAT........................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................TCAGTCTTTTTCTCTCTCCTGCC........................................................... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................ACTGTCTTTGTCTCTCTCCT.............................................................. 20 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCAGTCTCTGTCTCTATCCTGT............................................................ 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTGTGTCTTTCTCTCTCCTGC............................................................ 22 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCAGTCTCTGTCTCTATCCT.............................................................. 20 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACTGTCTGTGTCTCTCTCCTGT............................................................ 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCAGTCTCCGTCTCTCTCCT.............................................................. 20 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCTGTCTCTTTCTCTCTCCT.............................................................. 20 1 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GCCTTCGTGCCGGCGACGCA............................................................................................................................................................................ 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CCTGTCTGTGTCTCTCTCCTAC............................................................ 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTCTGTCTCTTTCTCTCTCCT.............................................................. 21 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................TCGGTCTTTGTCACTCTCCT.............................................................. 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TCGGGCTTTGTCTCTCTCCT.............................................................. 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTCTCTCTCTCTCTCTCTCTCTC.................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................TCTGTCTTTGTCTCTCTCCG.............................................................. 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATCGAGAGGTCCGCGGG.............................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................TCTGTCTGTGTCTCTCTCCTAT............................................................ 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCCGTCTTTGTCTCTCTCCT.............................................................. 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGATATCGAAGACGGCGGTAATGCTCATGGCCGGCCTCCTCCTTGTTACCACGTAAGAACGGCCGCTGGGTAATTGATTTGAAGAATTAACTTAAAGAGGGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGACAGAGACAGAGAGAGGACGGGAAGGTATCCGTTAGCTGTCCAGTCGCACACCACTGTTGACGTCGGTCAGGTGCTTGAG
****************************************************************************************************...............................................................********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V053
head
 GSM1528803
follicle cells		 SRR060677
Argx9_ovaries_total
 M047
female body
 SRR060666
160_males_carcasses_total
....TATCGGAGACGGCGGGAATGTT.......................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.............GGGCGGTAATGTTCATGG..................................................................................................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0
.......................................................................................................................................................GAGAAAGAAAGAGACAGAGACAGAGAT.................................................................. 27 2 8 0.13 1 0 0 1 0 0
......TAGAAGACGGCGGTCATGAT.......................................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0
.......................................................................................................GAGAAAGAGAGAGAGAGAGAGAGAGA................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1
............................TGGTCGGCCTCCCCCTTTT..................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1961326-1961569 + dvi_12832 AGCTATAGCTTCTGCCG---CCATTACGAGTACCGGCCGGAGGAGGAACAAT------GGTGCATTCTTGCCGGCGACCCATTAACTAA---------ACT-----------------------------TCTT--AATTGAA--------------------------------------------------------------------------------------TT------------TCTCCCTCTCTTT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCT----------CTCT--CTC------------------------TCT-----------CTCTTTCTCTCTCTGTCT----CTGTC------TCTCTCCTG------------CCCT---T-CC---------------------------------ATAGGCAATC-GACAGGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GACAACT--------------------------------------------------------------------------------GCAGCCAGTC---CACGAACTC---------------------------------
droMoj3 scaffold_6500:15774615-15774829 - ATCGCTTGA-------------------------------TGAAGAGTTAAC------GGTAAA-------------------------------------------------------------------------------------------------TTATGCTGTTGTCGCCTTG----------------ACCGAAAAGTAAGT----------------------------------CTCCCTGTCTTTCAC----CCTCCCCC-------------------TCTCTATCA--CTCTCTCTCTCTCTCTC----TCTCTCTCT----------------------------------------------CT------CTCTC-TCT------C--TCTTTCT--CT--C------TCTC----T--------------CT---T--------CCGATTCGCTGCACTTTCCC-AAA-------CCGAATC-GA----ACAACCGGTCAT---------------------------------------------------------------------------------------------------------------------------------------------------GTCAATT--------------------------------------------------------------------------------G--GCCAGCA---GATAAGCTC---------------------------------
droGri2 scaffold_15245:11366357-11366541 - GCT-GTAGTTGCTGCTG---CTGTTG----------------------------------------------------------------------------------------------------------------TCCG-GCTCCCAGGCGCTTGATGTCGTACATTTT--GC--TGCTGCAGTCACCAAAACTGCTGAAA-----------CTGCCTCTAC---------T--------GCTCCCTCTCTTG--------------C----TCTC------CTCCCTCTCTC----------------TCTCT------CTCTCTCTCTCTCT--------TT--CTCTTTC--------------------TCT------CGCTC---------TCTCTCTCT----CT--CTC----GCTC------------------TCT---TGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------
droWil2 scf2_1100000004909:5342978-5343120 + GAGGGG------------------------------------------------------------------------------------------------------------TAAATAACCGTTACCT-CTTGTTGCCCA-TTCCCCAAACATA---------------------------------------------------------------T----------------------------------CTGGCATATCTTTTTTTT---------C------TCTC--TCTCCTTCTCTCTCTCTCTCTCTC------TCTCTCT------------CT----------------CTCTCTCTCTCC---------------------------T--TCTTT----CT------------------GTGCTCTTT-ACTCCT---TGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------
dp5 XR_group8:4469057-4469222 + CCAGCA-----------------------------------------------------------------------------------------------AGAGATCCGGCCACT----------------------------------------GAGAATAGAACACTTCTCGC--TC----------------GCCCGGGACTAACTGTCCACCCCT----------------------------------CTCGAAAATCCTCTCTCT---------C------TCTC--TC--------------------T------CACTCTCTCTGTCTC--ACT--GT--CTCTCTGTGTAGCTCTCTCTGTCTC-----------------------------TCTTC----C------------------TACCCTCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTGCTC-----------------------------------------------------------------ATC---------------------------------
droPer2 scaffold_29:703961-704138 + CCAGCA-----------------------------------------------------------------------------------------------AGAGATCCGGCCACT----------------------------------------GAGAATAGAACACTTCTCGC--TC----------------GCCCGGGACTAACTGTCCACCCCT----------------------------------CTCGAAAATCCTCTCTCT---------C------TC----TC--------------------T------CACTCTCTCTGTCTC--ACT--GT--CTCTCTGTGTAGCTCTCTCTGTCTC-----------------------------TCTTC----C------------------TACCCTCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTGCTCATCTTCGGCGCTCTCG---------------------------------------------------T---------------------------------
droAna3 scaffold_13280:774156-774298 - TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCTCTGTCT--------------C-----------TGTCTCTGTCTCTG----------------TCTCTG----TCTCTGTCTCTGTCT------------CTG------------------------TCT-----------CTGTCTCTGTCTCTGTCT----CTGTC------TCTG----T------------CCCT---TGCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTCC-----TTGGTCACTGGGC-----------------------------------TACTGGGTCAGA-AGTGACACCTGTAGACA--------------------
droBip1 scf7180000395184:2110-2279 - CCCTC-----------------------------------------------------------------------------------------------------------------------------------TGCCAC--------------------------------------------------------------------------CT------------------------------------TT--------------C-----------TCTAGCCATCTCGC--------CCTCTCTCTTTCG--------CGCGCTTTCTTTCTGGCC--TT--C--------------------------TC---------------------CCTCTTTCT----CTGCC--TTTCTCTG----ACCTTTCTCTG---GGTTT---CTC--GCCAGC---------------------GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------TGTCAGCACTCGGCTGGAGACCAAAAAC-GGCAGCCAGTCGGTCAGAAACTC---------------------------------
droKik1 scf7180000302344:1548474-1548615 + TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCT------------CTCTCTC------------------------TCT-----------CTCTCTCTCTCTCTCTCT----CTCTT------TCTC----T------TTT-GGCCCT---TTTC---------------------------------------------ACGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCAACTGGTGGCAATACACTGACAGAAAGTCTA---------C---------------------------------
droFic1 scf7180000449461:27599-27730 + TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTATCT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCTCTCT------------CTC------------------------TCT-----------CTCTCTCTCTCTCTCTCT----CTGTC------TCTC----T------------CTCTCT---CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------CATAGATGATCGGCCGTCGGCAAACGGC-TACAGCC---------------A---------------------------------
droEle1 scf7180000491006:1487573-1487713 - TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCT------------CT--CTC------------------------TCTCT---------CTCTC----------------------------TCTA--------------------T---TTCTCTCTGTGAC----------TTTCGAGCAACAACAT------TA-AACAGCTGAGCTTGTT-T---------------------------------------------------------------------------------------------------------------------------------------------------GAAAACA--------------------------------------------------------------------------------ACAGCCGTCCAA---CCAACTA---------------------------------
droRho1 scf7180000779588:337816-337980 + AGCTGCAGTTGCCCCCATT-CAA---GC---A---------------CCAAC-GCCCC----------AAT--------CGATGTTCAATGCAGCGCCCAT-----------------------------GCT------------GTTCCCCCATTCTAGGTGAGTCGC---------------------------------------------------------------------CCCTC----TC------T--------------CTCGCTCTCCTCTCTCTCTC----------------------TCTCT------GTCTCTGTCTCTGTC--TCT--TT--TTCTCTGT-------------------------------------------------------CT------GTCTCTG--------------------TCT---ATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------
droBia1 scf7180000302402:5916922-5917102 + TGCTGTTGCTGCCGCTG---CTGCTGCTGTTGTTGA---------------TG------------------------------------------------GGGGCCACGCTCACAAAGAACTTGGACAT-TTCGCTGCCGG-CTCTTCGTGATTC---------------------------------------------------------------CTT---GGCGATTCTCCGCCGCAC----TC------T--------------C-----------------TCCCC--------CTCTCTCTCTCTCTCTC------TCTCTCT------------CAGC--CTC---------------------------------------TCTC------------T----C------------------CTCCGTCTGTA---GATGT---GTC--TCCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------
droTak1 scf7180000414425:64998-65137 - GGTAGATC--ATTAGTC---CACTT------G---------------CTAAT-GGC-C---------------------CACAAAACAAAGGA-----AAT-----------------------------TCTCGTT------------------------------------------------------------------------------------------------------------TCTCCCT--GTCG------------A-------------TAGCTGCTTCTC--------------TCTCTCTC----TCTCTCTCTTTATAT------------CTG------------------------TCT-----------CCCTC----TCTTTCTCT----CT--GTCTGTCTTGT----G------------CACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------
droEug1 scf7180000409008:152876-153167 - AGCTACAGCTTTGGGCG---CTGCTACGAATATCAACCAGACGATTCCAAAT-GGT-C---------------------AGCAGTGCAATAGG-----AAA-----------------------------TCTTGAA------------------------------------------------------------------------------------------------------------TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTG--GTATCAAAGATAGCTTAAAACTTCTGATATAATCGACTTTGATTCCCCTCTTCCACCGCTTAAACTACCAAAATGTATATATTTTTCAATTTTATTTGAATGCATTTATAAAATCTATATCTTCTCTTATTATTTTGTACTTTCAGGCAGGCTACTGGAACCAGGCCCGCTCCTGCAGCTCCCGTTTT---------------------------------------------------GTC-AACGCACAGGGAATC---------------------------------
dm3 chr3RHet:2136604-2136714 + TTATCT----------------------------------------------------------------------------------------------------------------------------AAGC--TCCCCTC--------------------------------------------------------------------------T-----CT---------CGCTCGC--TCTCTCTCTCTCT--------------C-------------------TCTCTT--------------TCTC--------TCTCTCTCTCTCT--------CTCT--C--------------------------TCTCTCTCTCTCTC-TCT------C--TCTCTCT--CT--C------TCTC----T--------------CTCT---CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------
droSim2 x:4657319-4657477 - ATTAGTTAA-----------------------------------------------------------------------------------------AGT-----------------------------TTTCAAA--------------------------------------------------------------------------------------------GTTTGCCACCTCTC----GC------T--------------C-----------------TATCG--------CTCTCTCTCTCTCTCTCTCTCTTGCACT--------------------CTA------ATGCTCCC----------TCC-------------CGC----TT--TCTCT--CTCT--C------GCTA----G------------CCAT---TGCTT--------------GCTATTTCGC-AAG-------AAAAGTTTAATTAGTGGGCGTGGT-G---------------------------------------------------------------------------------------------------------------------------------------------------CA-----------------------------------------------------------------------------------------------------AAAATT---------------------------------
droSec2 scaffold_8:1150296-1150433 - TGAACT----------------------------------------------------------------------------------------------------------------------------CGTG--TTTTGTT--------------------------------------------------------------------------T------------T------------TCTCTCTCTCTCTCT------------T-------------TCTCTCTCTCTC--------------TCTCTCT------CTCTCTC--TCT--------CTCT--C--------------------------TCTTTCTCTCTCTC---------TTTCTCTCT----CACTC------TCTC----T--------------CTTT---TTC--TTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------AAACGACAGAGCAAAATGCAG
droYak3 X:17076069-17076243 - ATTAGTAGCTGTTGTTG---CGATTCCCGTT-----------------------TC-----------TTGC--------CGTTAATTAAATTG-----GAT-----------------------------TTTCGCTGCTTG-------------------------------------------------------------------------CTGCTTCCGC---TAG------------TCTCTCTCGTTCC--------------C-----------TCTCGTTCCCTCTC----------------TTTCTG----TCTATTAACTTGCCT------------C--------------TCTCTATCTCTCTCC------CTCTC---------TCTCTCT------CT--C------ACTC------------------GCTCT---CTC--TGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------
droEre2 scaffold_4845:10964728-10964892 + GGGCGCAGGAGGAGCCAAAGGGG---GT---G---------------GTAAT-AAC-C----------AGC--------CGGGGGGCAATGAA-----AAC-----------------------------TTTCCCT---------------------AGAT---------------------------------------------------------------GGCTTTTATCCCCCTCTC----TC------T--------------C-----------------TCTCG--------ATCTCTCTCTCTCTCTC------TCTCTCT------------CTCTCTCTC---------------------------------------ACTCTAATCCGCTGTCG----CTGTC------TCCT----T------------TCCTCTCTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCTATAGCTTCTGCCG---CCATTACGAGTACCGGCCGGAGGAGGAACAAT------GGTGCATTCTTGCCGGCGACCCATTAACTAA---------ACT-----------------------------TCTT--AATTGAA--------------------------------------------------------------------------------------TT------------TCTCCCTCTCTTT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCT----------CTCT--CTC------------------------TCT-----------CTCTTTCTCTCTCTGTCT----CTGTC------TCTCTCCTG------------CCCT---T-CC---------------------------------ATAGGCAATC-GACAGGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GACAACT--------------------------------------------------------------------------------GCAGCCAGTC---CACGAACTC---------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATC-GACAGGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GACAAC........................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GACAACT--------------------------------------------------------------------------------GCA....................................................2511.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATC-GACAGGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GACAACT--------------------------------------------------------------------------------GCAGCCA................................................2011.001000000000000000000000000000000000000000100000000000000000000000
...................................................................................................CT-----------------------------TCTT--AATTGAA--------------------------------------------------------------------------------------TT------------TCTCCCTCTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................T------GGTGCATTCTTGCCGGCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATC-GACAGGTCAGCGTGTG...................................................................................................................................................................................................................................................................................................2011.001000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-GACAGGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GA............................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACT--------------------------------------------------------------------------------GCAGCCAGTC---CACGAACT..................................2511.001001000000000000000000000000000000000000000000000000000000000000
....ATAGCTTCTGCCG---CCATTACGAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------------------------------------------GACAACT--------------------------------------------------------------------------------GCAGCCAGTC---..........................................1811.001000000000000000100000000000000000000000000000000000000000000000
....................................CCGGAGGAGGAACAAT------GGTGCATTCTTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GACA..........................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------GACAACT--------------------------------------------------------------------------------GCAGCCA................................................2711.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATC-GACAGGTCAGCGTGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................TCTC----------------TCTCTC----TCTCTCTCTCT----------CTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
ATCGCTTGA-------------------------------TGAAGAGTTAAC------GGTAAA-------------------------------------------------------------------------------------------------TTATGCTGTTGTCGCCTTG----------------ACCGAAAAGTAAGT----------------------------------CTCCCTGTCTTTCAC----CCTCCCCC-------------------TCTCTATCA--CTCTCTCTCTCTCTCTC----TCTCTCTCT----------------------------------------------CT------CTCTC-TCT------C--TCTTTCT--CT--C------TCTC----T--------------CT---T--------CCGATTCGCTGCACTTTCCC-AAA-------CCGAATC-GA----ACAACCGGTCAT---------------------------------------------------------------------------------------------------------------------------------------------------GTCAATT--------------------------------------------------------------------------------G--GCCAGCA---GATAAGCTC---------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCT-GTAGTTGCTGCTG---CTGTTG----------------------------------------------------------------------------------------------------------------TCCG-GCTCCCAGGCGCTTGATGTCGTACATTTT--GC--TGCTGCAGTCACCAAAACTGCTGAAA-----------CTGCCTCTAC---------T--------GCTCCCTCTCTTG--------------C----TCTC------CTCCCTCTCTC----------------TCTCT------CTCTCTCTCTCTCT--------TT--CTCTTTC--------------------TCT------CGCTC---------TCTCTCTCT----CT--CTC----GCTC------------------TCT---TGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GAGGGG------------------------------------------------------------------------------------------------------------TAAATAACCGTTACCT-CTTGTTGCCCA-TTCCCCAAACATA---------------------------------------------------------------T----------------------------------CTGGCATATCTTTTTTTT---------C------TCTC--TCTCCTTCTCTCTCTCTCTCTCTC------TCTCTCT------------CT----------------CTCTCTCTCTCC---------------------------T--TCTTT----CT------------------GTGCTCTTT-ACTCCT---TGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CCAGCA-----------------------------------------------------------------------------------------------AGAGATCCGGCCACT----------------------------------------GAGAATAGAACACTTCTCGC--TC----------------GCCCGGGACTAACTGTCCACCCCT----------------------------------CTCGAAAATCCTCTCTCT---------C------TCTC--TC--------------------T------CACTCTCTCTGTCTC--ACT--GT--CTCTCTGTGTAGCTCTCTCTGTCTC-----------------------------TCTTC----C------------------TACCCTCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTGCTC-----------------------------------------------------------------ATC---------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCAGCA-----------------------------------------------------------------------------------------------AGAGATCCGGCCACT----------------------------------------GAGAATAGAACACTTCTCGC--TC----------------GCCCGGGACTAACTGTCCACCCCT----------------------------------CTCGAAAATCCTCTCTCT---------C------TC----TC--------------------T------CACTCTCTCTGTCTC--ACT--GT--CTCTCTGTGTAGCTCTCTCTGTCTC-----------------------------TCTTC----C------------------TACCCTCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCTGCTCATCTTCGGCGCTCTCG---------------------------------------------------T---------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGTCTCTGTCT--------------C-----------TGTCTCTGTCTCTG----------------TCTCTG----TCTCTGTCTCTGTCT------------CTG------------------------TCT-----------CTGTCTCTGTCTCTGTCT----CTGTC------TCTG----T------------CCCT---TGCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTCC-----TTGGTCACTGGGC-----------------------------------TACTGGGTCAGA-AGTGACACCTGTAGACA--------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCAGA-AGTGACACCTGTAGACA--------------------26200.051100000
droBip1
CCCTC-----------------------------------------------------------------------------------------------------------------------------------TGCCAC--------------------------------------------------------------------------CT------------------------------------TT--------------C-----------TCTAGCCATCTCGC--------CCTCTCTCTTTCG--------CGCGCTTTCTTTCTGGCC--TT--C--------------------------TC---------------------CCTCTTTCT----CTGCC--TTTCTCTG----ACCTTTCTCTG---GGTTT---CTC--GCCAGC---------------------GATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----------------------TGTCAGCACTCGGCTGGAGACCAAAAAC-GGCAGCCAGTCGGTCAGAAACTC---------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCT------------CTCTCTC------------------------TCT-----------CTCTCTCTCTCTCTCTCT----CTCTT------TCTC----T------TTT-GGCCCT---TTTC---------------------------------------------ACGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCAACTGGTGGCAATACACTGACAGAAAGTCTA---------C---------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTATCT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCTCTCT------------CTC------------------------TCT-----------CTCTCTCTCTCTCTCTCT----CTGTC------TCTC----T------------CTCTCT---CTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------CATAGATGATCGGCCGTCGGCAAACGGC-TACAGCC---------------A---------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTCTCTCTCT--------------C-----------TCTCTCTCTCTCTC----------------TCTCTC----TCTCTCTCTCT------------CT--CTC------------------------TCTCT---------CTCTC----------------------------TCTA--------------------T---TTCTCTCTGTGAC----------TTTCGAGCAACAACAT------TA-AACAGCTGAGCTTGTT-T---------------------------------------------------------------------------------------------------------------------------------------------------GAAAACA--------------------------------------------------------------------------------ACAGCCGTCCAA---CCAACTA---------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCTGCAGTTGCCCCCATT-CAA---GC---A---------------CCAAC-GCCCC----------AAT--------CGATGTTCAATGCAGCGCCCAT-----------------------------GCT------------GTTCCCCCATTCTAGGTGAGTCGC---------------------------------------------------------------------CCCTC----TC------T--------------CTCGCTCTCCTCTCTCTCTC----------------------TCTCT------GTCTCTGTCTCTGTC--TCT--TT--TTCTCTGT-------------------------------------------------------CT------GTCTCTG--------------------TCT---ATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCTGTTGCTGCCGCTG---CTGCTGCTGTTGTTGA---------------TG------------------------------------------------GGGGCCACGCTCACAAAGAACTTGGACAT-TTCGCTGCCGG-CTCTTCGTGATTC---------------------------------------------------------------CTT---GGCGATTCTCCGCCGCAC----TC------T--------------C-----------------TCCCC--------CTCTCTCTCTCTCTCTC------TCTCTCT------------CAGC--CTC---------------------------------------TCTC------------T----C------------------CTCCGTCTGTA---GATGT---GTC--TCCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGTAGATC--ATTAGTC---CACTT------G---------------CTAAT-GGC-C---------------------CACAAAACAAAGGA-----AAT-----------------------------TCTCGTT------------------------------------------------------------------------------------------------------------TCTCCCT--GTCG------------A-------------TAGCTGCTTCTC--------------TCTCTCTC----TCTCTCTCTTTATAT------------CTG------------------------TCT-----------CCCTC----TCTTTCTCT----CT--GTCTGTCTTGT----G------------CACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCTACAGCTTTGGGCG---CTGCTACGAATATCAACCAGACGATTCCAAAT-GGT-C---------------------AGCAGTGCAATAGG-----AAA-----------------------------TCTTGAA------------------------------------------------------------------------------------------------------------TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTG--GTATCAAAGATAGCTTAAAACTTCTGATATAATCGACTTTGATTCCCCTCTTCCACCGCTTAAACTACCAAAATGTATATATTTTTCAATTTTATTTGAATGCATTTATAAAATCTATATCTTCTCTTATTATTTTGTACTTTCAGGCAGGCTACTGGAACCAGGCCCGCTCCTGCAGCTCCCGTTTT---------------------------------------------------GTC-AACGCACAGGGAATC---------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTATCT----------------------------------------------------------------------------------------------------------------------------AAGC--TCCCCTC--------------------------------------------------------------------------T-----CT---------CGCTCGC--TCTCTCTCTCTCT--------------C-------------------TCTCTT--------------TCTC--------TCTCTCTCTCTCT--------CTCT--C--------------------------TCTCTCTCTCTCTC-TCT------C--TCTCTCT--CT--C------TCTC----T--------------CTCT---CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.TATCT----------------------------------------------------------------------------------------------------------------------------AAGC--TCCCCTC--------------------------------------------------------------------------T-----CT---------CGCTCGC--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TCCCCTC--------------------------------------------------------------------------T-----CT---------CGCTCGC--TCTCTCTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TC--------------------------------------------------------------------------T-----CT---------CGCTCGC--TCTCTCTCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCT--------CTCT--C--------------------------TCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CTCT--------CTCT--C--------------------------TCTCTCTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTCT--C--------------------------TCTCTCTCTCTCTC-...............................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CTCTCT--------CTCT--C--------------------------TCTCTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CT--------CTCT--C--------------------------TCTCTCTCTCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................T-----CT---------CGCTCGC--TCTCTCTCTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................C--------------------------------------------------------------------------T-----CT---------CGCTCGC--TCTCTCTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTC-TCT------C--TCTCTCT--CT--......................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GC--TCTCTCTCTCTCT--------------C-------------------TCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TCT--------CTCT--C--------------------------TCTCTCTCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTC-TCT------C--TCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TCT--C--------------------------TCTCTCTCTCTCTC-TCT------......................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTC-TCT------C--TCT................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................T--------------C-------------------TCTCTT--------------TCTC--------TCTCTCTCTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................T--------CTCT--C--------------------------TCTCTCTCTCTCTC-T..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTC-TCT------C--TCTCTCT--..........................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TCTCT--------CTCT--C--------------------------TCTCTCTCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................T--C--------------------------TCTCTCTCTCTCTC-TCT------C--T..................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................C--------------------------------------------------------------------------T-----CT---------CGCTCGC--TCTCTCTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................TC--------TCTCTCTCTCTCT--------CTCT--C--------------------------TCTCTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................T------C--TCTCTCT--CT--C------TCTC----T--------------CTCT---CT...............................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCT------C--TCTCTCT--CT--C------TCTC----T--------------CTCT---.................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................C--------TCTCTCTCTCTCT--------CTCT--C--------------------------TC............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCT--CT--C------TCTC----T--------------CTCT---CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T..................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCTC--------TCTCTCTCTCTCT--------CTCT--C--------------------------TCTCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TCTCTCTCTCTCT--------------C-------------------TCTCTT--------------TCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TC-TCT------C--TCTCTCT--CT--C------TCTC----T--------------CT......................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TCTCTT--------------TCTC--------TCTCTCTCTCTCT--------CTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CTCTT--------------TCTC--------TCTCTCTCTCTCT--------CTCT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTCT--C--------------------------TCTCTCTCTCTCTC-T..............................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTC-TCT------C--TCTCTCT--CT--C------TCTC----T--------------........................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TC--------TCTCTCTCTCTCT--------CTCT--C--------------------------TCTCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CTCTC-TCT------C--TCTCTCT--CT--C------T..............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................C--------------------------TCTCTCTCTCTCTC-TCT------C--TCT................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCTC-TCT------C--TCT................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................C--TCTCTCT--CT--C------TCTC----T--------------CTCT---CT...............................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................C-TCT------C--TCTCTCT--CT--C------TCTC----T--------------........................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCTCTC-TCT------C--TCTCTCT--CT--......................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTC-TCT------C--TCTCTCT--..........................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................CTCTCTC-TCT------C--TCTCTCT--CT--C------T..............................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCT------C--TCTCTCT--CT--C------TCTC----T--------------........................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................CT--C--------------------------TCTCTCTCTCTCTC-TCT------......................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CT------C--TCTCTCT--CT--C------TCTC----T--------------CTCT---.................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCT--CT--C------TCTC----T--------------CTCT---CT...............................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCT--------CTCT--C--------------------------TCTCTCTCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................C-------------------TCTCTT--------------TCTC--------TCTCTCTCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TCTCTCT--------------C-------------------TCTCTT--------------TCTC--------TCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CTCTCTC-TCT------C--TCTCTCT--CT--......................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................CTCTCT--------CTCT--C--------------------------TCTCTCTCTCTCTC-TC.............................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCTC-TCT------C--TCTCTCT--CT--C------T..............................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CT--------CTCT--C--------------------------TCTCTCTCTCTCTC-T..............................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTC-TCT------C--TCTCTCT--..........................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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............................................................................................................................................................................................................................................................CTCT--------------C-------------------TCTCTT--------------TCTC--------TCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TCTCTCT--------CTCT--C--------------------------TCTCTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TC--------TCTCTCTCTCTCT--------CTCT--C--------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................TC--------TCTCTCTCTCTCT--------CTCT--C--------------------------TCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................C--------TCTCTCTCTCTCT--------CTCT--C--------------------------TCTCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCT--------------C-------------------TCTCTT--------------TCTC--------TCTCTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CT------C--TCTCTCT--CT--C------TCTC----T--------------CT......................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCTC-TCT------C--TCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................C--------------------------TCTCTCTCTCTCTC-TCT------C--T..................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................C-TCT------C--TCTCTCT--CT--C------TCTC----T--------------CT......................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTC-TCT------C--TCTCTCT--CT--C------TCT............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTCT--C--------------------------TCTCTCTCTCTCTC-TCT------......................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CTCT--------CTCT--C--------------------------TCTCTCTCTCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTC-TCT------C--TCTCTCT--CT--......................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCT--CT--C------TCTC----T--------------CTCT---CTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T..................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................T------C--TCTCTCT--CT--C------TCTC----T--------------CT......................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................CT--C--------------------------TCTCTCTCTCTCTC-TCT------C--T..................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCTCTC-TCT------C--T..................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTC-TCT------C--TCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................................................................................................................................................................................................................CTCTC-TCT------C--TCTCTCT--CT--C------TCT............................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................................................T--C--------------------------TCTCTCTCTCTCTC-TCT------......................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TCTCTCTCT--------------C-------------------TCTCTT--------------TCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
ATTAGTTAA-----------------------------------------------------------------------------------------AGT-----------------------------TTTCAAA--------------------------------------------------------------------------------------------GTTTGCCACCTCTC----GC------T--------------C-----------------TATCG--------CTCTCTCTCTCTCTCTCTCTCTTGCACT--------------------CTA------ATGCTCCC----------TCC-------------CGC----TT--TCTCT--CTCT--C------GCTA----G------------CCAT---TGCTT--------------GCTATTTCGC-AAG-------AAAAGTTTAATTAGTGGGCGTGGT-G---------------------------------------------------------------------------------------------------------------------------------------------------CA-----------------------------------------------------------------------------------------------------AAAATT---------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TGAACT----------------------------------------------------------------------------------------------------------------------------CGTG--TTTTGTT--------------------------------------------------------------------------T------------T------------TCTCTCTCTCTCTCT------------T-------------TCTCTCTCTCTC--------------TCTCTCT------CTCTCTC--TCT--------CTCT--C--------------------------TCTTTCTCTCTCTC---------TTTCTCTCT----CACTC------TCTC----T--------------CTTT---TTC--TTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------------AAACGACAGAGCAAAATGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATTAGTAGCTGTTGTTG---CGATTCCCGTT-----------------------TC-----------TTGC--------CGTTAATTAAATTG-----GAT-----------------------------TTTCGCTGCTTG-------------------------------------------------------------------------CTGCTTCCGC---TAG------------TCTCTCTCGTTCC--------------C-----------TCTCGTTCCCTCTC----------------TTTCTG----TCTATTAACTTGCCT------------C--------------TCTCTATCTCTCTCC------CTCTC---------TCTCTCT------CT--C------ACTC------------------GCTCT---CTC--TGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GGGCGCAGGAGGAGCCAAAGGGG---GT---G---------------GTAAT-AAC-C----------AGC--------CGGGGGGCAATGAA-----AAC-----------------------------TTTCCCT---------------------AGAT---------------------------------------------------------------GGCTTTTATCCCCCTCTC----TC------T--------------C-----------------TCTCG--------ATCTCTCTCTCTCTCTC------TCTCTCT------------CTCTCTCTC---------------------------------------ACTCTAATCCGCTGTCG----CTGTC------TCCT----T------------TCCTCTCTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:55 PM