ID:

dvi_12819

 Coordinate:

scaffold_12970:1549938-1550024 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ19044-cds]; exon [dvir_GLEANR_3858:3]; exon [dvir_GLEANR_3858:2]; CDS [Dvir\GJ19044-cds]; intron [Dvir\GJ19044-in]

Repeatable elements

NameClassFamilyStrand
(TTAGG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------##################################################
GTGCGACGGACGAAGCGATTGCACAGACAACACGGATGAATTGGAATGCGGCAAGTGAAGAAATTCTAAAATCGAACCTAACCTCACCTAAACAAACCTAACCTCAAACTAATGTACATTATATCCTTGGACTGCAGACTACAAAATGTGCCGGCAGCCGCATTGGTTCCCGTGTGCCCAGCCACAC
**************************************************....((((.....(((.......))).......))))..................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060663
160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 M028
head
 SRR060684
140x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060661
160x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 M047
female body
 SRR060662
9x160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR1106729
mixed whole adult body
 SRR060679
140x9_testes_total
 V116
male body		 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR1106730
embryo_16-30h
 SRR060666
160_males_carcasses_total
 SRR060659
Argentina_testes_total
 M061
embryo
...................TGCACAGACAACTAGGATG..................................................................................................................................................... 19 2 1 39.00 39 0 4 8 8 6 6 0 0 1 0 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0
....................GCACAGACAACTAGGATG..................................................................................................................................................... 18 2 4 7.25 29 0 4 11 5 2 6 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGCACAGACAACTAGGAT...................................................................................................................................................... 18 2 8 7.00 56 0 12 12 11 5 13 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..................TTGCACAGACAACTAGGATG..................................................................................................................................................... 20 2 1 4.00 4 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTGCGACGGACGAAGCGATTGCA.................................................................................................................................................................... 23 0 1 4.00 4 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGCACAGACAACTAGGATGT.................................................................................................................................................... 20 3 1 4.00 4 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTGCCGGCAGCCGCATTGGTTCC................. 23 0 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AACACGGATGAATTGGAATGC.......................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GCACAGACAACACGGATGAAT.................................................................................................................................................. 21 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CAGACAACACGGATGAATTGGA.............................................................................................................................................. 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AGACAACACGGATGAATTGGAATGC.......................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CAGACAACACGGATGAATTGGAAT............................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTGCGACGGACGAAGCGATTGC..................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGCACAGACAACACGGATG..................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ACGGATGAATTGGAATGC.......................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTGCGACGGACGAAGCGATTG...................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AACACGGATGAATTGGAAT............................................................................................................................................ 19 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACAGACAACACGGATGAATTGGAATG........................................................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTACAAAATGTGCCGGCAGCCGCG......................... 24 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CAGACAACACGGATGAATTGGAATGC.......................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................CGGATGAGTTGGACTGCGCC....................................................................................................................................... 20 3 10 1.20 12 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGACTACAAAATGTGCCG.................................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................GACAACACGGATGAATTGGA.............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACAGACAACACGGATGAATTGGAATGC.......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTGGTTCCCGTGTGCCCAGCC.... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AACACGGATGAATTGGAATGCGACT...................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CAACACGGATGAATTGGAATG........................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACAGACAACACGGATGAATTGGAAT............................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACACGGATGAATTGGAATGCGACT...................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGCCGCATTGGTTCCCGTGT............ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AAGCGATTGCACAGACAACA........................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CAGACAACACGGATGAATTG................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TACAAAATGTGCCGGCAGCCGCATTG...................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................GCACAGACAACACGGATGA.................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GCACAGACAACACGGATGAATT................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGCAGCCGCATTGGTTCCCGTGT............ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTACAAAATGTGCCGGCA............................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGCGACGGACGAAGCGATT....................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGCACAGACAACACGGATGAATTGGAA............................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GACGGACGAAGCGATTGCACAGAC............................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CACGGATGAATTGGAATGC.......................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GACGGACGAAGCGATTGCACA.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTACAAAATGTGCAGGCAGCCGCG......................... 24 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GCCGCATTGGTTCCCGTGT............ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ACCGGCAGCCGCATTGGTTCCCGTGT............ 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CGATTGCACAGACAACACGGA....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GTGCGACGGACGAAGCGATTGCAC................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCGACGGACGAAGCGATTGCACAGACAACACGGATGAAT.................................................................................................................................................. 39 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGGCAGCCGCATTGGTTCCCGT.............. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CGATTGCACAGACAACACGGATGAATTGG............................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTGCGACGGACGAAGCGATT....................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTGCGACGGACGAAGCCATT....................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TACAAAAGGTGCCGGCAGCCGCA......................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACAACACGGATGAATTGGAAT............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGCGACTACAAAATGTGCCGGCA............................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AAAATGTGCCGGCAGCCGCATTG...................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CACGGATGAATTGGAATGCGAC....................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................CAACACGGATGAATTGGAATGCGA........................................................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TTGCACAGACAACTAGGAT...................................................................................................................................................... 19 2 5 0.80 4 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GTCAAGTGAAGAAATTCAA....................................................................................................................... 19 2 8 0.75 6 0 2 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0
.................GTTGCACAGACAACTAGGATG..................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCCTTGGACTACAGA................................................. 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................GCACAGACAACTAGGATGT.................................................................................................................................................... 19 3 20 0.20 4 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GTCAAGTGAAGAAATTCCA....................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................TTATAATCTTGGACGGCAGA................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................TGCATAGACAACTCGGATGT.................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................CGGATGAGTTGGAGTGCGCC....................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ACGGATGAATTGGCA............................................................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AACAACCCTAACCTCCAGCT............................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGCATAGACAACTAGGATGA.................................................................................................................................................... 20 3 19 0.11 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................GACAAGAAGGGTGAATTGGA.............................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................ACGTCAAGTGAAGAAATTCAA....................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGCATAGACAACAAGGATGT.................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................TGCCCAGACAACTAGGATG..................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GTCAAGTGAAGAAATTCA........................................................................................................................ 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................TGCACAGACAACTAGGGTG..................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CACGCTGCCTGCTTCGCTAACGTGTCTGTTGTGCCTACTTAACCTTACGCCGTTCACTTCTTTAAGATTTTAGCTTGGATTGGAGTGGATTTGTTTGGATTGGAGTTTGATTACATGTAATATAGGAACCTGACGTCTGATGTTTTACACGGCCGTCGGCGTAACCAAGGGCACACGGGTCGGTGTG
**************************************************....((((.....(((.......))).......))))..................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
......................................................................................................................................GTCTGATGCTTAACAGGGC.................................. 19 3 7 0.14 1 1
.....................................................................................................................................CGTCTTAAGTTCTACACGGC.................................. 20 3 9 0.11 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1549888-1550074 - dvi_12819 GTGCGACGGACGAAGCGATTGCACAGACAACACGGATGAATTGGAATGCGGCAAGTGAAG--------------------------AAATT-CTA------------------------------------------------------------------------------------------------------------------AAATCGAACCTAACCTCACCTAAACA-AACCTAACC-----T-----------------------------------------C-AAACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTACATTATATCCTTGGACTGCAGACTACAAAATGTGCCGGCAGCCGCATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droMoj3 scaffold_6359:2745039-2745200 - GTGCGACGGACGTAGCGATTGCACAGACAACACGGATGAATTGGAATGCGGTAGCTA---------------------------------------------------------------------------------C----------------------------------------------------------------------AAATCGAATCTAACCTCA---------AACTTAACC-----T-----------------------------------------A-AATCTT-----------------------------------------------------------------------------------------------------------ATAT----------------------------------------------------------------------CTC---------CGTGGATGGCAGACTACAAGCTGTGCCGGCAGCCGCATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droGri2 scaffold_15081:1318992-1319097 - GTGCGACGGACGTAGAGATTGCACAGACAACTCGGATGAATTGGAATGCGGCAAGTG------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAAAAAAACACACCTAACCTCAATTAATCAGTATCTAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAA-------------------
droWil2 scf2_1100000004515:2422850-2423043 + GTGCGACGGACGTCGCGACTGCCCAGACAACACAGATGAATTGGAATGCGGTAACGATCGAAATCAGTTTAATTTCCCTTTTTCGAGT-GA---------------------------------------------------------------------------------------------------------------------------------------A---------AAAGTAACC-----T-----------------------------------------C-ACTTTT-----------------------------------------TTTTC---CT--------------------------------CCCATAT-ATGTATG-TATGC-------ACC------------------------------------------------------------------------------------TGTTTAGACTACAAGATGTGCCGTCAGCCGCATTGGTTCCCATGTGCCCAGACACAT-------------------
dp5 XL_group1e:6149900-6150094 - GTGTGACGCACGAAGCGACTGCACCGATGCCACAGATGAATTGGATTGCGGTAGGGC-G-------------------------------G-CTCAAACGCCATTTTCCAACCCCGCCCCTCCCCTCCCATCCGACCACCGATGGCATTTGCTC----------------------------------------------------------------------------------AATTTAACC-----T-----------------------------------------C-ACTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGACTACAAGCTGTGCCGGGAACCGCATTGGTTCCCGTGCGCCCAGCCACAT-------------------
droPer2 scaffold_21:1115092-1115286 - GTGTGACGCACGAAGCGACTGCACCGATGCCACAGATGAATTGGATTGCGGTAGGGC-G-------------------------------G-CTCAAACGCCATTTTCCAACCCCGCCCCTCCCCTCCCATCAGACCACCGATGGCATTGGCTC----------------------------------------------------------------------------------AACCTAACC-----T-----------------------------------------C-ACTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGACTACAAGCTGTGCCGGGAACCGCATTGGTTCCCGTGCGCCCAGCCACAT-------------------
droAna3 scaffold_13047:1610937-1611098 + GTGCGACGGACATGGAGACTGCAAGGACGGCACAGACGAATTGGACTGCGGTAAGGC------------------------------------------------------------------------------------------------------------------------------------------------------------CCCC-----------------------------------------------------------------------TCT--------------------------------------------------TCTTCCTAAT--------------------------------CCCCTCCAGCGTATGATACGATTGGTAATCC------------------------------------------------------------------------------------CTTCCAGACTACCGACTGTGCCGAGAGCCACATTGGTTCCCGTGTGCCCCGCCACAC-------------------
droBip1 scf7180000396740:406685-406841 + GTGCGACGGACATGGAGACTGCAAGGACGGCACAGACGAATTGGACTGCGGTATGGC------------------------------------------------------------------------------------------------------------------------------------------------------------CACT-----------------------------------------------------------------------GAT--------------------------------------------------TCTTC---C----------------------------------CCAGAAAGTGTATGATACGAGCTCTAATCC------------------------------------------------------------------------------------TTTCCAGACTACCGACTGTGCCGAGAGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droKik1 scf7180000302517:396458-396617 - GTGCGACGGACGCGGAGACTGCAAGGATGGCTCAGATGAATTACACTGCGGTAAAAT---------------------------------------------------------------------------------------------------------------------ATGCT----------------------------------CACTTTTATGGGTA---------AACGAAATT-----C-----------------------------------------G-AATTCT-----------------------------------------------------------------------------------------------------------AAAT----------------------------------------------------------------------TTACAT-----------TTTTCAGACTACCGACTGTGTCGGCCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droFic1 scf7180000454073:911329-911573 - GTGCGACGGACGCGGAGACTGCAAGGACGGCTCGGATGAACTGGACTGCGGTGAGTG-G-------------------------------A-ACTTAAGGAAATCTTATAACCCTTGAA------------------------------------------------------------------------------------------------------------------------------------AGCG-GTTA------------------------------------------------------------------------------------------------------------------------------------TGTATG-TATGT-------ATGTTTAAAACTTAGCTATTGCAAAACATCCAAAAACATAAAATAAAATTATTAAATTATAT-A---TATTTTCATTCCATATCTAATATAAAGACTACAAACTGTGCCGACCGCCTCATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droEle1 scf7180000491013:25375-25558 - CTGCGACGGCGACGACGACTGCGGCGACAACTCGGACGAG---GACCC--------------------------------------------CAA---------CTACTGTGCCTACCAC-------------------TCCTGCTCCCCCAACGAGTTCCGCTGCAACAACGGACGCTGCATCTTCAAGTCCTGGAAGTGCGACCACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACGACTGCAAGGATGGTTCCGACGAGCTGGGCTGCACCTATCCGCCC---------
droRho1 scf7180000776513:26498-26599 + TA------------------------------------------ACTGCGGTAAACC-G-------------------------------A-ACCCAAC----------------------------------------------------------------------------------------------------------------------------CTTA----------------------------------------------------------------TA-AA-TCT-----------------------------------------------------------------------------------------------------------CCAA---------------------------------------------------------------------------------TCCCGATATCCAGACTACCGAATGTGCCGAGCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droBia1 scf7180000301760:5238031-5238223 - CTGCGACGGCGACGACGACTGTGGCGACAACTCGGACGAG---GACCC--------------------------------------------CAA---------CTACTGTGCCTACCAC-------------------TCCTGCTCGCCGAACGAGTTCCGCTGCAACAACGGACGCTGCATCTTCAAGTCCTGGAAGTGCGACCACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACGACTGCAAGGATGGCTCCGACGAGCTGGGCTGCACCTATCCGCCCTGCGTGGAC
droTak1 scf7180000415667:546400-546452 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTACCGACTGTGCCGAGCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droEug1 scf7180000409008:498636-498867 + GTGCGACGGACACGGAGACTGCAAAGACAGCTCGGATGAATTGGATTGCGGTAAGCACGG--------------------------GT------TAATT--C-------ATTTCTCCCAC-------------------TGCTGATATAAGATA----------------------------------------------------------------------------------AAGTTATCA-----TAGAGTGCTGGGTAATCTTATAGAGTCATAGCAGATCCCCATAAAT-AATCCCATAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTCATTGC-------ACATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCTCAGCCACAC-------------------
dm3 chrX:14088018-14088095 + TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTCATTCCAATCCGGATATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droSim2 x:13299770-13299822 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droSec2 scaffold_20:692445-692497 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTACCGACTGTGCCAACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droYak3 X:8341724-8342000 + GTGCGACGGACGCGGAGACTGCAAGGACGGCTCGGATGAATTGGACTGCGGTGAGCATGG--------------------------GGTGG-CTCAGA----------------------------------------------CAGGGCAGACCTGTTCCGCTG-------------------------------------------------------------------------------------------GTTACGCAATCCTAGCTAGAGATACCATATCCTCA--------------------------------------------------TCTTCCTAATTTGTCAATTTTCATGTGAAAATCAATGGTTATTCACTCC------------------------------------------------------GATCTTATAGT---ATTAT-------TACCATATTATCTTCATTTCAAACCGGATATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------
droEre2 scaffold_4690:12842419-12842711 - GTGCGACGGACGCGGAGACTGCAAGGACAGCTCGGATGAATTGGACTGCGGTGAGCATGG--------------------------GT-GGAAC------------------------------------------------------AGGATA---------------------GGTTATGCTCCTAAGTGCTC-------------------------------------------------CTGAGTTCGCGGGTTAGGCAATCCTAGCTAGAGATACTCCATCCTCATG-AT-ACTCCAACACCATTATCGCCATTATAAAAACGTGCTTTGGAATTTCTTCTTAATGT-TC------------------------------------------------------------------------------------------------------------AAATTATACCATATTAACTTCTTTACATACCGGATATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTGCGACGGACGAAGCGATTGCACAGACAACACGGATGAATTGGAATGCGGCAAGTGAAG--------------------------AAATT-CTA------------------------------------------------------------------------------------------------------------------AAATCGAACCTAACCTCACCTAAACA-AACCTAACC-----T-----------------------------------------C-AAACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTACATTATATCCTTGGACTGCAGACTACAAAATGTGCCGGCAGCCGCATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
GTGCGACGGACGAAGCGATTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.004000000000002010000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGGCAGCCGCATTGGTTCC....................................2313.003000000000000000000000000000000000000000000000000000000000000003
............................AACACGGATGAATTGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000020000000000000000000000000000000000000000000000000
....................GCACAGACAACACGGATGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000001010000000000000000000000000000000000000000000000000
.......................CAGACAACACGGATGAATTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000010000000000000000000000100000000000000000000000000
........................AGACAACACGGATGAATTGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000002000000000000000000000000000000000000000000000000000
.......................CAGACAACACGGATGAATTGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000020000000000000000000000000000000000000000000000000
GTGCGACGGACGAAGCGATTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000020000000000000000000000000000000000000000000000000
...................TGCACAGACAACACGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
...............................ACGGATGAATTGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000020000000000000000000000000000000000000000000000000
GTGCGACGGACGAAGCGATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000020000000000000000000000000000000000000000000000000
............................AACACGGATGAATTGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000010000000000000000000010000000000000000000000000000
......................ACAGACAACACGGATGAATTGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000010000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAAATGTGCCGGCAGCCGCG............................................2412.002000000000000000000000000000000000000000000000000000000000000002
.......................CAGACAACACGGATGAATTGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000011000000000000000000000000000000000000000000000000000
.........................GACAACACGGATGAATTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
......................ACAGACAACACGGATGAATTGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTCCCGTGTGCCCAGCC.......................2211.001000000000000000000000000000000000000100000000000000000000000000
...........................CAACACGGATGAATTGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
......................ACAGACAACACGGATGAATTGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCATTGGTTCCCGTGT...............................2011.001000000000000000000000000000000000000100000000000000000000000000
............AAGCGATTGCACAGACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
.......................CAGACAACACGGATGAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000001000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAATGTGCCGGCAGCCGCATTG.........................................2611.001000000000000000000000000000000010000000000000000000000000000000
....................GCACAGACAACACGGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
....................GCACAGACAACACGGATGAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCCGCATTGGTTCCCGTGT...............................2311.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAAATGTGCCGGCA..................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.TGCGACGGACGAAGCGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
...................TGCACAGACAACACGGATGAATTGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
....GACGGACGAAGCGATTGCACAGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
..............................CACGGATGAATTGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
....GACGGACGAAGCGATTGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCATTGGTTCCCGTGT...............................1911.001000000000000000000000000000000000010000000000000000000000000000
...............CGATTGCACAGACAACACGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
GTGCGACGGACGAAGCGATTGCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
..GCGACGGACGAAGCGATTGCACAGACAACACGGATGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3911.001000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCCGCATTGGTTCCCGT.................................2211.001000000000000000000000000000000000000010000000000000000000000000
...............CGATTGCACAGACAACACGGATGAATTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000010000000000000000000000000000000000000000000000000
GTGCGACGGACGAAGCGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
..........................ACAACACGGATGAATTGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTGCCGGCAGCCGCATTG.........................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................CAACACGGATGAATTGGAATGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
GTGCGACGGACGTAGCGATTGCACAGACAACACGGATGAATTGGAATGCGGTAGCTA---------------------------------------------------------------------------------C----------------------------------------------------------------------AAATCGAATCTAACCTCA---------AACTTAACC-----T-----------------------------------------A-AATCTT-----------------------------------------------------------------------------------------------------------ATAT----------------------------------------------------------------------CTC---------CGTGGATGGCAGACTACAAGCTGTGCCGGCAGCCGCATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCCGTGTGCCCAGCC.......................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACAAGCTGTGCCGGCAGCCGC.............................................2511.001100000
...................TGCACAGACAACACGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCTGTGCCGGCAGCCGCAT...........................................2311.001100000
droGri2
GTGCGACGGACGTAGAGATTGCACAGACAACTCGGATGAATTGGAATGCGGCAAGTG------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAAAAAAACACACCTAACCTCAATTAATCAGTATCTAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAA-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTGCGACGGACGTCGCGACTGCCCAGACAACACAGATGAATTGGAATGCGGTAACGATCGAAATCAGTTTAATTTCCCTTTTTCGAGT-GA---------------------------------------------------------------------------------------------------------------------------------------A---------AAAGTAACC-----T-----------------------------------------C-ACTTTT-----------------------------------------TTTTC---CT--------------------------------CCCATAT-ATGTATG-TATGC-------ACC------------------------------------------------------------------------------------TGTTTAGACTACAAGATGTGCCGTCAGCCGCATTGGTTCCCATGTGCCCAGACACAT-------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......CGGACGTCGCGACTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
dp5
GTGTGACGCACGAAGCGACTGCACCGATGCCACAGATGAATTGGATTGCGGTAGGGC-G-------------------------------G-CTCAAACGCCATTTTCCAACCCCGCCCCTCCCCTCCCATCCGACCACCGATGGCATTTGCTC----------------------------------------------------------------------------------AATTTAACC-----T-----------------------------------------C-ACTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGACTACAAGCTGTGCCGGGAACCGCATTGGTTCCCGTGCGCCCAGCCACAT-------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
GTGTGACGCACGAAGCGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
..........CGAAGCGACTGCACCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........CGAAGCGACTGCACCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........ACGAAGCGACTGCACCGATGCCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....ACGCACGAAGCGACTGCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...TGACGCACGAAGCGACTGCACCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.TGTGACGCACGAAGCGACTGCACCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
GTGTGACGCACGAAGCGACTGCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGTGCCGGGAACCGCA............................................1911.0010100000000
.......GCACGAAGCGACTGCACCGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
GTGTGACGCACGAAGCGACTGCACCGATGCCACAGATGAATTGGATTGCGGTAGGGC-G-------------------------------G-CTCAAACGCCATTTTCCAACCCCGCCCCTCCCCTCCCATCAGACCACCGATGGCATTGGCTC----------------------------------------------------------------------------------AACCTAACC-----T-----------------------------------------C-ACTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGACTACAAGCTGTGCCGGGAACCGCATTGGTTCCCGTGCGCCCAGCCACAT-------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................TGCCACAGATGAATTGGATTGCGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droAna3
GTGCGACGGACATGGAGACTGCAAGGACGGCACAGACGAATTGGACTGCGGTAAGGC------------------------------------------------------------------------------------------------------------------------------------------------------------CCCC-----------------------------------------------------------------------TCT--------------------------------------------------TCTTCCTAAT--------------------------------CCCCTCCAGCGTATGATACGATTGGTAATCC------------------------------------------------------------------------------------CTTCCAGACTACCGACTGTGCCGAGAGCCACATTGGTTCCCGTGTGCCCCGCCACAC-------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............GGAGACTGCAAGGACGGCACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................GACTGCAAGGACGGCACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................CAAGGACGGCACAGACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGACTGTGCCGAGAGCCACA............................................2211.001100000
...................TGCAAGGACGGCACAGACGAATTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............TGGAGACTGCAAGGACGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
GTGCGACGGACATGGAGACTGCAAGGACGGCACAGACGAATTGGACTGCGGTATGGC------------------------------------------------------------------------------------------------------------------------------------------------------------CACT-----------------------------------------------------------------------GAT--------------------------------------------------TCTTC---C----------------------------------CCAGAAAGTGTATGATACGAGCTCTAATCC------------------------------------------------------------------------------------TTTCCAGACTACCGACTGTGCCGAGAGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTGCGACGGACGCGGAGACTGCAAGGATGGCTCAGATGAATTACACTGCGGTAAAAT---------------------------------------------------------------------------------------------------------------------ATGCT----------------------------------CACTTTTATGGGTA---------AACGAAATT-----C-----------------------------------------G-AATTCT-----------------------------------------------------------------------------------------------------------AAAT----------------------------------------------------------------------TTACAT-----------TTTTCAGACTACCGACTGTGTCGGCCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTGCGACGGACGCGGAGACTGCAAGGACGGCTCGGATGAACTGGACTGCGGTGAGTG-G-------------------------------A-ACTTAAGGAAATCTTATAACCCTTGAA------------------------------------------------------------------------------------------------------------------------------------AGCG-GTTA------------------------------------------------------------------------------------------------------------------------------------TGTATG-TATGT-------ATGTTTAAAACTTAGCTATTGCAAAACATCCAAAAACATAAAATAAAATTATTAAATTATAT-A---TATTTTCATTCCATATCTAATATAAAGACTACAAACTGTGCCGACCGCCTCATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTGCGACGGCGACGACGACTGCGGCGACAACTCGGACGAG---GACCC--------------------------------------------CAA---------CTACTGTGCCTACCAC-------------------TCCTGCTCCCCCAACGAGTTCCGCTGCAACAACGGACGCTGCATCTTCAAGTCCTGGAAGTGCGACCACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACGACTGCAAGGATGGTTCCGACGAGCTGGGCTGCACCTATCCGCCC---------SizeHit CountTotal NormTotal
No Reads
droRho1
TA------------------------------------------ACTGCGGTAAACC-G-------------------------------A-ACCCAAC----------------------------------------------------------------------------------------------------------------------------CTTA----------------------------------------------------------------TA-AA-TCT-----------------------------------------------------------------------------------------------------------CCAA---------------------------------------------------------------------------------TCCCGATATCCAGACTACCGAATGTGCCGAGCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTGCGACGGCGACGACGACTGTGGCGACAACTCGGACGAG---GACCC--------------------------------------------CAA---------CTACTGTGCCTACCAC-------------------TCCTGCTCGCCGAACGAGTTCCGCTGCAACAACGGACGCTGCATCTTCAAGTCCTGGAAGTGCGACCACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACGACTGCAAGGATGGCTCCGACGAGCTGGGCTGCACCTATCCGCCCTGCGTGGACSizeHit CountTotal NormTotal
No Reads
droTak1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTACCGACTGTGCCGAGCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GTGCGACGGACACGGAGACTGCAAAGACAGCTCGGATGAATTGGATTGCGGTAAGCACGG--------------------------GT------TAATT--C-------ATTTCTCCCAC-------------------TGCTGATATAAGATA----------------------------------------------------------------------------------AAGTTATCA-----TAGAGTGCTGGGTAATCTTATAGAGTCATAGCAGATCCCCATAAAT-AATCCCATAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTCATTGC-------ACATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCTCAGCCACAC-------------------SizeHit CountTotal NormTotal
No Reads
dm3
TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTCATTCCAATCCGGATATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCGACTGTGCCGACCGC................................................2216.0060000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000003000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCCCGTGTGCCCAGCCAC.....................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCAATCCGGATATCCAG.....................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCCACATTGGTTCCCGT.................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAATCCGGATATCCAG.....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGTGCCGACCGCCACATTGGTT......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTCCCGTGTGCCCAGC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGACCGCCACATTGGTTCC....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATCCGGATATCCAG.....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTCCCGTGTGCCCAG.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATCCGGATATCCAGT....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCAGACTACCGACTGT.........................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACCGACTGTGCCGACCGCC...............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGACTGTGCCGACCGCC...............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTCCAATCCGGATATCCAG.....................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGACTGTGCCGACCGCCACATTGGTT......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATCCGGATATCCA......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTCCCGTGTGCCCAGCCACAC-------------------2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGACTGTGCCGACCGCCACATT..........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCGACTGTGCCGACCGCCA..............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCCCGTGTGCCCAGCC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACTGTGCCGACCGCCACATTGGTT......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACCGCCACATTGGTTCCC...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCGCCACATTGGTTCCC...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCGCCACATTGGTTCCCG..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGACTGTGCCGACCGCCACAT...........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCAATCCGGATATCCAGACTAC................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCGACCGCCACATTGGTTCCCGT.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCATTCCAATCCGGATATCCAG.....................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCGACTGTGCCGACC..................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCGACTGTGCCGACA..................................................1911.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAATCCGGATATCCAGA....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGACTGTGCCGACCGCC...............................................2011.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACCGCCACATT..........................................1511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCGACTGTGCCA.....................................................15200.05100000000001000000
droSec2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGACTACCGACTGTGCCAACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GTGCGACGGACGCGGAGACTGCAAGGACGGCTCGGATGAATTGGACTGCGGTGAGCATGG--------------------------GGTGG-CTCAGA----------------------------------------------CAGGGCAGACCTGTTCCGCTG-------------------------------------------------------------------------------------------GTTACGCAATCCTAGCTAGAGATACCATATCCTCA--------------------------------------------------TCTTCCTAATTTGTCAATTTTCATGTGAAAATCAATGGTTATTCACTCC------------------------------------------------------GATCTTATAGT---ATTAT-------TACCATATTATCTTCATTTCAAACCGGATATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGACCGCCACATTGGTTCC....................................22123.0023000000000023
..............................CTCGGATGAATTGGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17113.0013000000000013
......................AAGGACGGCTCGGATGAATTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.00600000000006
..............................CTCGGATGAATTGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1612.00200000000002
......................AAGGACGGCTCGGATGAATTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGACTGTGCCGACCGCCACATTGG........................................2611.00101000000000
....GACGGACGCGGAGACTGCAAGGACGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGACTGTGCCGACCGCCACATTGGT.......................................2811.00101000000000
droEre2
GTGCGACGGACGCGGAGACTGCAAGGACAGCTCGGATGAATTGGACTGCGGTGAGCATGG--------------------------GT-GGAAC------------------------------------------------------AGGATA---------------------GGTTATGCTCCTAAGTGCTC-------------------------------------------------CTGAGTTCGCGGGTTAGGCAATCCTAGCTAGAGATACTCCATCCTCATG-AT-ACTCCAACACCATTATCGCCATTATAAAAACGTGCTTTGGAATTTCTTCTTAATGT-TC------------------------------------------------------------------------------------------------------------AAATTATACCATATTAACTTCTTTACATACCGGATATCCAGACTACCGACTGTGCCGACCGCCACATTGGTTCCCGTGTGCCCAGCCACAC-------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GACAGCTCGGATGAATTGGACTGCGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28114.001400000014
GTGCGACGGACGCGGAGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...........GCGGAGACTGCAAGGACAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
GTGCGACGGACGCGGAGACTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000

Generated: 05/16/2015 at 09:39 PM