ID:

dvi_12818

 Coordinate:

scaffold_12970:1550190-1550340 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.4 -24.3 -24.2 -24.2

Flybase annnotation

exon [dvir_GLEANR_3858:2]; CDS [Dvir\GJ19044-cds]; intron [Dvir\GJ19044-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCAAATGTAAGTAGCAAATATCGCTGGAGCTATGTTTGTTGCGTGACATAACCTCAAATGCACACGTGGATTTATTTTTAATAGGGCCGCAATCTTGCGGGATAATCATGTGCGAACACAGTGCCATGTGCGTGGCCGGCAGTGGAGTGGTAAAAACGTCAGCCGGTGGTCCTGGTGGCTTTTGTGCCTGTGCCCTGCAGTGCTGCTGCTCGTTTGCGGTGAGGCTTCTGCCGCCGCGACGGGATCAGCG
*******************************************************************************************.....(((((((...((((..((..((....((((((.....((.....)).....)))))).....))..))..))))))))).))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060686
Argx9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060675
140x9_ovaries_total
 V047
embryo
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 M028
head
 V053
head
 SRR060679
140x9_testes_total
 V116
male body		 SRR060678
9x140_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 M061
embryo
................................................................................................................................................................................................GCCCTTCAGTGCTGCAGCT........................................ 19 2 2 22.00 44 0 8 0 22 5 1 2 0 0 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTGCAGTGCTGCTGCTCGTTTGCGGT.............................. 26 0 1 20.00 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGCTGCTCGTTTGCGGTGAGG.......................... 23 0 1 11.00 11 0 4 2 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AATCTTGCGGGATAATCATGTGC......................................................................................................................................... 23 0 1 5.00 5 0 1 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCTGCAGTGCTGCTGCTCGTTTGCGGT.............................. 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGCCCTTCAGTGCTGCAGCT........................................ 20 3 14 5.00 70 0 18 2 15 2 4 2 0 1 10 5 0 0 0 2 0 0 0 0 3 0 2 1 0 1 1 1 0
...........................................................................................................................................................................................................................GTGAGGCTTCTGCCGCCGCGACG......... 23 0 1 4.00 4 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGGCCGCAATCTTGCGGGAT................................................................................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CAGCCGGTGGTCCTGGTG......................................................................... 18 0 1 4.00 4 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAAAACGTCAGCCGGTGGT................................................................................ 19 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCAGCCGGTGGTCCTGGTG......................................................................... 19 0 1 3.00 3 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGCTGCTCGTTTGCGGTGAGG.......................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTGCAGTGCGGCTGCTCGTTTGCGGT.............................. 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACTGCAGTGCTGCTGCTCGTTTGCGGT.............................. 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGTGCCCTGCAGTGCTGCTGCTC....................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGCTGCTCGTTTGCGGTTAGG.......................... 23 1 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTTGCGGGATAATCATGTGC......................................................................................................................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GTAAAAACGTCAGCCGGTGGT................................................................................ 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGCCCTGCAGTGCTGCTGCTCGTTTGCG................................ 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAAAACGTCAGCCGGTGGTCCT............................................................................. 22 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCTCGTTTGCGGTGAGGCTTCTG.................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CGCCGCGACGGGATCAGCG 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTGGTAAAAACGTCAGCCGGTGGTC............................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGAGTGGTAAAAACGTCAGCC...................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTGGTAAAAACGTCAGCCGGTGGT................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTGGTAAAAACGTCAGCC...................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTTTTGTGCCTGTGCCCTGCAGTGCTGCT........................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATGTGCGTGGCCGGCAGTGGA........................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGAAGTGCTGCTGCTCGTTTGCGGT.............................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTCTGCCGCCGCGACGGGATC.... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTGCTGCCGCTCGTTTGCGGTG............................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTTTGCGGTGAGGCTTCTGCA.................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ACGTCAGCCGGTGGTCCTGGTGGC....................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGCGGGATAATCATGTGCGAACA.................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATGTGCGAACACAATGCCATGT......................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GCGTGGCCGGCAGTGGAGTGGTAAA................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTCTGCCGCCGCGACGGGATCAGC. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTTGTGCCTGTGCCCTGCAGT................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTTTGCGGTGAGGCTTCTGCC.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CCATGTGCGTGGCCGGCA............................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATGTGCGAACACAATGACATGTG........................................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTGGTAAAAACGTCAGCCGGTG.................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGCCGGCAGTGGAGTGGT................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTGCGTGGCCGGCAGTGGAGT...................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTGCAGTGCTGCTGCTCGTTTGC................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCTGCTGCTCGTTTGCGGTG............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTGCGAACACAGTGCCATGTGCG...................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGCTGCTCGTTTGCGGTGAG........................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTCTGCCGCCGCCACGGGATC.... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGGCTTCTGCCGCCGCGACGGGAG..... 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTGGCCGGCAGTGGAGTGGTT.................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AAACGTCAGCCGGTGGTCCTGGT.......................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGAGTGGTAAAAACGTCAG........................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CTGTGCCCTGCAGTGCTGCTGC......................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GCCCTGCAGTGCTGCTGCTCGTTTGC................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGTCAGCCGGTGGTCCTGGT.......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTGGCCGGCAGTGGAGTGGT................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGTGAGGCTTCTGCCGCCGCGACG......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CTGGTGGCTTTTGAGCCTGTG.......................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGAGGCTTCTGCCGCCGCGACGGG....... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GTAAAAACGTCAGCCGGTG.................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTAAGTAGCAAATATCGCTGGAGCTA.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CTGTGCCCTGCAGTGCTGCT........................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATGTGCGAACACAGTGCCA............................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTGCGAACACAATGCCATGTGCGT..................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CTGTGCCCTGCAGTGCTGCTGCTC....................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGTGCTGCTGCTCGTTTGC................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGTCAGCCGGTGGTCCTGGTGGCT...................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAAACGTCAGCCGGTGGTCCT............................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTGCCCTGCAGTGCTGCTGCTCGT..................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGCGGGATAATCATGTGCGAACACA.................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATGCAGTGCTGCTGCTCGTTTGCGGT.............................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GCGGGATAATCATGTGCGAACAC................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGCCGCCGTGACGCGAT..... 18 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGCCATGTGCGTGGCCGGCAGTGGA........................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGTCAGCCGGTGGTCCTG............................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTCTGCCGCCGCGACGGG....... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GTAAAAACGTCAGCCGGTGGTCCT............................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................ATGGCCGCAATCTTGCGGGATAATCATGT........................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTGCTGCTGCTCGTTTGCGGTGAGG.......................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTTGTGCCTGTGCCCTGC.................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATCTTGCGGGATAATCATGTGCGAA...................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTTTTGTGCCTGTGCCCTGCA................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATGTGCGTGGCCGGCAGTGGAGT...................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAAAACGTCAGCCTGTGGT................................................................................ 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGCCCTTCAGTGCTGCAGC......................................... 19 3 20 0.85 17 0 2 0 4 2 0 2 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1
................................................................................................................................................................................................GCCCTTCAGTGCTGCAGC......................................... 18 2 5 0.80 4 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCCTTCAGTGCTGCAGCT........................................ 18 2 8 0.75 6 0 0 0 2 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGCTGCTCGTTTGTGG............................... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GCAGTTTAGTGGTAAAACCG............................................................................................ 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GCCCTTCAGTGCTGCAGCTA....................................... 20 3 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTGCCGTGTGGGTGGCTGGCA............................................................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................CTGTGCCCTTTAGAGCTGCT........................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................GTCAGCCGTAGGTCCAGGT.......................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................TAGAAGTGGAGTGGTAAAAA.............................................................................................. 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GGTGGTCTTGGTGGGTTTA................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGTGCTGATGCTGGTTTGT................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GCCCTTCAGTGCTGCAACT........................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GCAGTTTAGTGGTAAAACC............................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGTTTACATTCATCGTTTATAGCGACCTCGATACAAACAACGCACTGTATTGGAGTTTACGTGTGCACCTAAATAAAAATTATCCCGGCGTTAGAACGCCCTATTAGTACACGCTTGTGTCACGGTACACGCACCGGCCGTCACCTCACCATTTTTGCAGTCGGCCACCAGGACCACCGAAAACACGGACACGGGACGTCACGACGACGAGCAAACGCCACTCCGAAGACGGCGGCGCTGCCCTAGTCGC
*************************************************************************.....(((((((...((((..((..((....((((((.....((.....)).....)))))).....))..))..))))))))).))******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060674
9x140_ovaries_total
 GSM1528803
follicle cells		 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V053
head
.................................................................................................AACCCTATTAGTACACGCTTG..................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................AGCAACGCCCTGAATTGG..................................................................................................................................................................................................... 18 3 20 0.65 13 0 0 6 2 0 2 0 0 1 1 1 0
.................................................................................TACCCCGGCGTTAGGACGGC...................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGGAAGTCACGACGATGA........................................ 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................AAATTTTTCCGGCGTTAG............................................................................................................................................................ 18 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TACCCCGGCTTTAGAAGGC....................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................GGTACAAAGAACGCACTGTC......................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................CGAACAACGCCCTGAATTG...................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................CGGTTGTAGAACGCCCTAT.................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................TATCCCGGCTTTAGGA.......................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1550140-1550390 - dvi_12818 ATCAAATGTAAGTAGCAAATATCGCTG--GAG-CTATGTTTGTTGCGT---GACATAACCTCAAATGCACACGTG----------------GATTT------ATTTTTAATAGGGCCGCAATCTTG---CGGGATAATCATGTGCGA---ACAC---AGTGCCATGTGC-------GTGGCCGG---CAGT---GGAGTGGTA---AAAACGTCAGCCGGTGGTC---CTGGTGGCTTTTGTGCCTGT----------GCCCTGCAGT---------------------------GCTGCTGCTCGTTTGCGGT----GAGGCTTCTGCCGCCGCGACGGGATCAGCG
droMoj3 scaffold_6359:2745266-2745488 - ATCAAATGTGAGTAGCAAATTGAGATGGGGAG-TGAGACTCATTGCGT---AACCTAACCTCAAATGCACACGTG----------------CATTT------TGTCCCAACAGGGCCGCAGCCTTGAGCCAAAAGAATAATGTGCGA---ACAC---AGTGCCATGTGC-------------------------------------------------AGCAGTC---CTGGTGGCTTTTGTGCCTGT----------GCGGTGGAGT---------------------------GCTGCTGCTCATTTGCGGT----GCGACTGCTGCCACCGCGACGGGATCAGCG
droGri2 scaffold_15081:1319163-1319442 - ATCAAATGTGAGTTGCA-------CTC--CAGCTTAAT----CTGTGC---ACCATAACCTCAAATGTACACGTGGTGGTTGATTTTTTTTTATTTTGTC-AATCTTTTACAGGGCCACAACTCTT---CTGGGGAATCATGTGCGACGAACAAAAGAGTGCCATGTGCCAT----GCGGACGGAGCCAGTGGAGGAGGGCGAGCAGCATCGCCCGACGGCAATCTTACTGCTGGCCTCTGTGCTCGT-------------TTGCAAT---------------------------GCTGCTGCTCGTTTGCTGT----GCGACTGCTGCCGCCACGACGGGATCAGCG
droWil2 scf2_1100000004515:2422556-2422784 + ACCAAATGTATGTAGA-----------------TGAATCTGATTCCAATTGGACATAACCTCACTTTGTCACATG----------------CCTC--ATCAAATTTTTCGCAGGGCCGCAAGATTG---CGGAG---AAATGTGCGA---GACA---AACGCCA----CCATGGATGTGGATAT---CGAT-ATGGAGGGCAA--------------------AT---GTCGTGGCATTTGTGCCAGC----------TGGCAGCAAT---------------------------GCTATTGCTCCTTTGCCGT----GCGCCTACTGCCGCCCCGTCGGGATCAGCG
dp5 XL_group1e:6150160-6150231 - CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGGTGCCGTCTGGCAGT---------------------------GTTGCTGCTCATTTTCTGT----GCGCTTGCTGCCGCCGCGTCGGGACCAGCG
droPer2 scaffold_21:1115352-1115423 - CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGGTGCCGTCTGGCAGT---------------------------GTTGCTGCTCATTTTCTGT----GCGCTTGCTGCCGCCGCGTCGGGACCAGCG
droAna3 scaffold_13047:1610815-1610868 + G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC---------------------------GATGCTACTACTATGCGGT----GCGATTCTTGCCACCGCGGCGGGATCACAG
droBip1 scf7180000396740:406563-406616 + G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC---------------------------GATTTTGCTACTATGCTGT----GCGATTCTTGCCACCGCGTCGGGATCCCAG
droKik1 scf7180000302517:396683-396736 - G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACT---------------------------GTTGCTCCTCATTTGCTGT----TCGTTTTGCTCCGCCACGTCGGGATCAGAG
droFic1 scf7180000454073:911639-911719 - GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCATTATCCCGCTGCTCCGACTTTTTGTCCTTGTTCTCCTTTGCGGT----GCGACTGCTGCCGGCACGCCGGGATCAGCG
droEle1 scf7180000491011:422875-422943 - GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCA---TCACGCTGCTCTG---------GCTCCTTGTCCTTTGCGGT----GCGACTGCTGCCGGCACGCCGGGATCAGAG
droRho1 scf7180000777033:233369-233430 - GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCGATGGCGACGACGACT---------------------------G--------------CGGCGACTACTCCGACGAGACCCACTGCGGAGCCAGGA
droBia1 scf7180000302041:1131936-1131994 + CGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTACT---------GCTCCTGGGCCTTTGCGGT----GCTGCTGCTGCCGGCACGCCGGGATCTGCG
droTak1 scf7180000415667:547222-547274 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCT------------TCTGCTTGGCCTTCGCGGT----GCTGCTGCTGCCGCCACGCCGGGATCAGCG
droEug1 scf7180000409008:498533-498570 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGGT----GCTACTGCTGCCGGCACGCCGGGATCTGCG
dm3 chrX:14087614-14087669 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTCCT---------GCTCGTGGGACTTTGCGGT----GGTACTGCTGCCGGCACGCCGGGATCAGCG
droSim2 x:13299330-13299385 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTCCT---------GCTCCTGGGACTTTGCGGT----GGTACTGCTGCCGGCACGCCGGGATCAGCG
droSec2 scaffold_20:692006-692061 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTCCT---------GCTCCTGGGACTTTGCGGT----GGTACTGCTGCCGGCACGCCGGGATCAGCG
droYak3 X:8341608-8341658 + G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------GCTCCTGGGCATTTGCGGT----GCTACTGCTGCCGGCACGCCGGGATCTGCG
droEre2 scaffold_4690:12842777-12842832 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTGCT---------GCTCCTTGGCCTTTGCGGT----GCTACTGCTGCCGGCACGCCGGGATCAGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCAAATGTAAGTAGCAAATATCGCTG--GAG-CTATGTTTGTTGCGT---GACATAACCTCAAATGCACACGTG----------------GATTT------ATTTTTAATAGGGCCGCAATCTTG---CGGGATAATCATGTGCGA---ACAC---AGTGCCATGTGC-------GTGGCCGG---CAGT---GGAGTGGTA---AAAACGTCAGCCGGTGGTC---CTGGTGGCTTTTGTGCCTGT----------GCCCTGCAGT---------------------------GCTGCTGCTCGTTTGCGGT----GAGGCTTCTGCCGCCGCGACGGGATCAGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................CTGCAGT---------------------------GCTGCTGCTCGTTTGCGGT----..............................26120.00200000000000000000000000000000000000000000000000000000000000000020
.......................................................................................................................................................................................................................................................................................................GCTGCTGCTCGTTTGCGGT----GAGG..........................23111.0011001000001010020000000000000000001000410000000000000000000000000
.......................................................................................................................AATCTTG---CGGGATAATCATGTGC...........................................................................................................................................................................................................2315.005000000000001030000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................CCTGCAGT---------------------------GCTGCTGCTCGTTTGCGGT----..............................2715.005000000000000000000000000000000000000000000000000000000000000005
........................................................................................................................................................................................................................................................................................................................GT----GAGGCTTCTGCCGCCGCGACG.........2314.004000000000000010000000000000000000000210000000000000000000000000
.....................................................................................................................................................................................................................CAGCCGGTGGTC---CTGGTG..................................................................................................................1814.004000000000000000000000000211000000000000000000000000000000000000
..........................................................................................................................................................................................................A---AAAACGTCAGCCGGTGGT............................................................................................................................1913.003000000000000020000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................TCAGCCGGTGGTC---CTGGTG..................................................................................................................1913.003001000000000000000000000100000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................CTGCTGCTCGTTTGCGGT----GAGG..........................2213.003000000000000000000000000000000000000000000000000000000000000003
.....................................................................................................................................................................................................................................................TGT----------GCCCTGCAGT---------------------------GCTGCTGCTC...........................................2312.002000000000000000000000000000000000000000000000000000000000000002
..........................................................................................................................CTTG---CGGGATAATCATGTGC...........................................................................................................................................................................................................2012.002000000000000020000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GTA---AAAACGTCAGCCGGTGGT............................................................................................................................2112.002000000000000010000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................T----------GCCCTGCAGT---------------------------GCTGCTGCTCGTTTGCG....................................2812.002000000000000000000000000000000000000000000000000000000000000002
..........................................................................................................................................................................................................A---AAAACGTCAGCCGGTGGTC---CT......................................................................................................................2212.002000000000000010000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GCTCGTTTGCGGT----GAGGCTTCTG....................2311.001000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CGCCGCGACGGGATCAGCG1911.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................GTGGTA---AAAACGTCAGCCGGTGGTC---........................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................GGAGTGGTA---AAAACGTCAGCC..................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................GTGGTA---AAAACGTCAGCCGGTGGT............................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
.....................................................................................................................................................................................................GTGGTA---AAAACGTCAGCC..................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................CTTTTGTGCCTGT----------GCCCTGCAGT---------------------------GCTGCT...............................................2911.001000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................ATGTGC-------GTGGCCGG---CAGT---GGA.......................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTTCTGCCGCCGCGACGGGATC....2211.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GTTTGCGGT----GAGGCTTCTGCA..................2111.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................ACGTCAGCCGGTGGTC---CTGGTGGC................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TG---CGGGATAATCATGTGCGA---ACA...................................................................................................................................................................................................2311.001000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................GC-------GTGGCCGG---CAGT---GGAGTGGTA---AA............................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTTCTGCCGCCGCGACGGGATCAGC.2511.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................TTTTGTGCCTGT----------GCCCTGCAGT---------------------------.....................................................2211.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GTTTGCGGT----GAGGCTTCTGCC..................2111.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................CCATGTGC-------GTGGCCGG---CA...............................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................GTGGTA---AAAACGTCAGCCGGTG..............................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................GGCCGG---CAGT---GGAGTGGT..................................................................................................................................................1811.001000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GTGC-------GTGGCCGG---CAGT---GGAGT.....................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................CTGCAGT---------------------------GCTGCTGCTCGTTTGC.....................................2311.001000000000000000000000000000000000000000000000000000000000000001
...........................................................................................................................................................................................................................................................................T---------------------------GCTGCTGCTCGTTTGCGGT----G.............................2111.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................GTGCGA---ACAC---AGTGCCATGTGC-------G...........................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCTGCTGCTCGTTTGCGGT----GAG...........................2211.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AGGCTTCTGCCGCCGCGACGGGAG.....2411.001000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................GTGGCCGG---CAGT---GGAGTGGTT---..............................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................AAACGTCAGCCGGTGGTC---CTGGT...................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................T---GGAGTGGTA---AAAACGTCAG....................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................CTGT----------GCCCTGCAGT---------------------------GCTGCTGC.............................................2211.001000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................GCCCTGCAGT---------------------------GCTGCTGCTCGTTTGC.....................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CGTCAGCCGGTGGTC---CTGGT...................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................GTGGCCGG---CAGT---GGAGTGGT..................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGT----GAGGCTTCTGCCGCCGCGACG.........2411.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GT----GAGGCTTCTGCCGCCGCGACGGG.......2511.001000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................GTA---AAAACGTCAGCCGGTG..............................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.......GTAAGTAGCAAATATCGCTG--GAG-CTA........................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTGT----------GCCCTGCAGT---------------------------GCTGCT...............................................2011.001000000000000000000000000000000000000000000000000000000000000001
...........................................................................................................................................ATGTGCGA---ACAC---AGTGCCA........................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CTGT----------GCCCTGCAGT---------------------------GCTGCTGCTC...........................................2411.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................CAGT---------------------------GCTGCTGCTCGTTTGC.....................................2011.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CGTCAGCCGGTGGTC---CTGGTGGCT...............................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................AAAACGTCAGCCGGTGGTC---CT......................................................................................................................2111.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................GT----------GCCCTGCAGT---------------------------GCTGCTGCTCGT.........................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TG---CGGGATAATCATGTGCGA---ACAC---A..............................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................G---CGGGATAATCATGTGCGA---ACAC---...............................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGCCATGTGC-------GTGGCCGG---CAGT---GGA.......................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................CGTCAGCCGGTGGTC---CTG.....................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................................................CTTCTGCCGCCGCGACGGG.......1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GTA---AAAACGTCAGCCGGTGGTC---CT......................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GT---------------------------GCTGCTGCTCGTTTGCGGT----GAGG..........................2511.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTTTGTGCCTGT----------GCCCTGC...................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................ATCTTG---CGGGATAATCATGTGCGA---A.....................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CTTTTGTGCCTGT----------GCCCTGCA..................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ATGTGC-------GTGGCCGG---CAGT---GGAGT.....................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATCAAATGTGAGTAGCAAATTGAGATGGGGAG-TGAGACTCATTGCGT---AACCTAACCTCAAATGCACACGTG----------------CATTT------TGTCCCAACAGGGCCGCAGCCTTGAGCCAAAAGAATAATGTGCGA---ACAC---AGTGCCATGTGC-------------------------------------------------AGCAGTC---CTGGTGGCTTTTGTGCCTGT----------GCGGTGGAGT---------------------------GCTGCTGCTCATTTGCGGT----GCGACTGCTGCCACCGCGACGGGATCAGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................GGCTTTTGTGCCTGT----------GCGGTGGAGT---------------------------GCTG.................................................2911.001100000
....................................................................................................................................................................................................................................................CTGT----------GCGGTGGAGT---------------------------GCTGCTGCT............................................2311.001000010
....................................................................................................................................................................................................................................................................................................................TGCGGT----GCGACTGCTGCC..................1811.001100000
droGri2
ATCAAATGTGAGTTGCA-------CTC--CAGCTTAAT----CTGTGC---ACCATAACCTCAAATGTACACGTGGTGGTTGATTTTTTTTTATTTTGTC-AATCTTTTACAGGGCCACAACTCTT---CTGGGGAATCATGTGCGACGAACAAAAGAGTGCCATGTGCCAT----GCGGACGGAGCCAGTGGAGGAGGGCGAGCAGCATCGCCCGACGGCAATCTTACTGCTGGCCTCTGTGCTCGT-------------TTGCAAT---------------------------GCTGCTGCTCGTTTGCTGT----GCGACTGCTGCCGCCACGACGGGATCAGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACCAAATGTATGTAGA-----------------TGAATCTGATTCCAATTGGACATAACCTCACTTTGTCACATG----------------CCTC--ATCAAATTTTTCGCAGGGCCGCAAGATTG---CGGAG---AAATGTGCGA---GACA---AACGCCA----CCATGGATGTGGATAT---CGAT-ATGGAGGGCAA--------------------AT---GTCGTGGCATTTGTGCCAGC----------TGGCAGCAAT---------------------------GCTATTGCTCCTTTGCCGT----GCGCCTACTGCCGCCCCGTCGGGATCAGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................CTACTGCCGCCCCGTCGGGATC....2211.00101000
dp5
CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGGTGCCGTCTGGCAGT---------------------------GTTGCTGCTCATTTTCTGT----GCGCTTGCTGCCGCCGCGTCGGGACCAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................GT----GCGCTTGCTGCCGCCGC.............1911.0010100000000
droPer2
CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTGGTGCCGTCTGGCAGT---------------------------GTTGCTGCTCATTTTCTGT----GCGCTTGCTGCCGCCGCGTCGGGACCAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC---------------------------GATGCTACTACTATGCGGT----GCGATTCTTGCCACCGCGGCGGGATCACAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC---------------------------GATTTTGCTACTATGCTGT----GCGATTCTTGCCACCGCGTCGGGATCCCAGSizeHit CountTotal NormTotal
No Reads
droKik1
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACT---------------------------GTTGCTCCTCATTTGCTGT----TCGTTTTGCTCCGCCACGTCGGGATCAGAGSizeHit CountTotal NormTotal
No Reads
droFic1
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCATTATCCCGCTGCTCCGACTTTTTGTCCTTGTTCTCCTTTGCGGT----GCGACTGCTGCCGGCACGCCGGGATCAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCA---TCACGCTGCTCTG---------GCTCCTTGTCCTTTGCGGT----GCGACTGCTGCCGGCACGCCGGGATCAGAGSizeHit CountTotal NormTotal
No Reads
droRho1
GCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCGATGGCGACGACGACT---------------------------G--------------CGGCGACTACTCCGACGAGACCCACTGCGGAGCCAGGASizeHit CountTotal NormTotal
No Reads
droBia1
CGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTACT---------GCTCCTGGGCCTTTGCGGT----GCTGCTGCTGCCGGCACGCCGGGATCTGCGSizeHit CountTotal NormTotal
No Reads
droTak1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCT------------TCTGCTTGGCCTTCGCGGT----GCTGCTGCTGCCGCCACGCCGGGATCAGCGSizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGGT----GCTACTGCTGCCGGCACGCCGGGATCTGCGSizeHit CountTotal NormTotal
No Reads
dm3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTCCT---------GCTCGTGGGACTTTGCGGT----GGTACTGCTGCCGGCACGCCGGGATCAGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................ACTGCTGCCGGCACGCCGGGATCAGC.2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009
.........................................................................................................................................................................................................................................................................................................TCGTGGGACTTTGCGGT----GGTACTGC......................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GTGGGACTTTGCGGT----GGT...........................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................CT---------GCTCGTGGGACTTTGCGGT----G.............................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CCT---------GCTCGTGGGACTTTGC.....................................1914.0040000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
...................................................................................................................................................................................................................................................................................................................................TGCTGCCGGCACGCCGGGATCA...2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CGGCACGCCGGGATCAGCG1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CTCCT---------GCTCGTGGGACTTTGCGG...................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GGCACGCCGGGATCAGCG1812.0020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GCTCCT---------GCTCGTGGGACTTTGC.....................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CTTTGCGGT----GGTACTGCTGCCGGCA..............2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCT---------GCTCGTGGGACTTTGC.....................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCT---------GCTCGTGGGACTTTGCGGT----GGTAC.........................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGT----GGTACTGCTGCCGGC...............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................T---------GCTCGTGGGACTTTGCGGT----GGTAC.........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGT----GGTACTGCTGCCGGCACGCCGGG.......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GCTCCT---------GCTCGTGGGACTTTGCGG...................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TGCTGCCGGCACGCCGGGATC....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CTCGTGGGACTTTGCGGT----GGTACTGC......................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCTCGTGGGACTTTGCGGT----G.............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGGGACTTTGCGGT----GGTACTGCTGC...................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................T------------GCTCCT---------GCTCGTGGGACTTTGCGG...................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TTTGCGGT----GGTACTGCTGCCGGCACGC...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GT----GGTACTGCTGCCGGCACG............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GACTTTGCGGT----GGTACTGCTG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GTGGGACTTTGCGGT----GGTACTGC......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CCT---------GCTCGTGGGACTTTGCGGT----G.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGT----GGTACTGCTGCCGGCACGCCGG........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TACTGCTGCCGGCACGCCGGGATCAGCG2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTGCGGT----GGTACTGCTGCCGGCACGC...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GTACTGCTGCCGGCACGCCGGGATCAGCG2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCT---------GCTCGTGGGACTTTGCGGT----G.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CTTTGCGGT----GGTACTGCTGCCGGCACGCC..........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................T---------GCTCGTGGGACTTTGCGGT----GGT...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GCTCCT---------GCTCGTGGGACTTTGCG....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CGTGGGACTTTGCGGT----GGTACTGC......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCT---------GCTCGTGGGACTTTGCGGT----GG............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ACTGCTGCCGGCACGCCGGGAT.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGT----GGTACTGCTGCCGGCACGCCGGGA......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GGACTTTGCGGT----GGTACTGCTGCC..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................T------------GCTCCT---------GCTCGTGGGACTTTGCG....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CTCGTGGGACTTTGCGGT----G.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ACTTTGCGGT----GGTACTGCTGCCGGCAC.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GACTTTGCGGT----GGTACTGCTGCCGGCA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................T------------GCTCCT---------GCTCGTGGGACTTTGC.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CCT---------GCTCGTGGGACTTTGCGG...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGGGACTTTGCGGT----GGTACTGCT.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................T----GGTACTGCTGCCGGCACGCCA.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTGCTGCCGGCACGCCGGGATCAGCG2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GTGGGACTTTGCGGT----GGTAC.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................ACTGCTGCCGGCACGCCGGGATCAGCG2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CGTGGGACTTTGCGGT----GGTA..........................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGT----GGTACTGCTGCCGGCACGCCGGGAT.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GTGGGACTTTGCGGT----GGTACT........................2111.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GGTACTGCTGCCGGCACGCCGGGATCAG..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTGCTGCCGGCACGCCGGGATC....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CTCCT---------GCTCGTGGGACTTTGC.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................CTCCT---------GCTCGTGGGACTTTGCGGT----G.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................T----GGTACTGCTGCCGGCACGCCGGC.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCT---------GCTCGTGGGACTTTGCGGT----GGT...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................T---------GCTCGTGGGACTTTGCGGT----GGTA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCTCGTGGGACTTTGCGGT----GGTA..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droSim2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTCCT---------GCTCCTGGGACTTTGCGGT----GGTACTGCTGCCGGCACGCCGGGATCAGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................TGGGACTTTGCGGT----GGTACTGCTG....................2411.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................ACTGCTGCCGGCACGCC..........1711.00100000000001000000
.............................................................................................................................................................................................................................................................................................T---------GCTCCTGGGACTTTGCGGT----GG............................2211.00100000000000010000
...........................................................................................................................................................................................................................................................................................................CTGGGACTTTGCGGT----GGTACTGCTG....................2511.00100000000000010000
.........................................................................................................................................................................................................................................................................................................TCCTGGGACTTTGCGGT----GGTACTGC......................2511.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................ACTGCTGCCGGCACGCCGGGATCAGCG2711.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................ACGCCGGGATCAGCG1511.00100000000001000000
............................................................................................................................................................................................................................................................................................................TGGGACTTTGCGGT----GGTACTGCTGCC..................2611.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................GCTGCCGGCACGCCGGGATC....2011.00100000000001000000
droSec2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTCCT---------GCTCCTGGGACTTTGCGGT----GGTACTGCTGCCGGCACGCCGGGATCAGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................T----GGTACTGCTGCCGGCACGCCG.........2211.0011000
droYak3
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------GCTCCTGGGCATTTGCGGT----GCTACTGCTGCCGGCACGCCGGGATCTGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................GCTACTGCTGCCGGCACGCCGGGATC....26122.0022000000000022
droEre2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------GCTGCT---------GCTCCTTGGCCTTTGCGGT----GCTACTGCTGCCGGCACGCCGGGATCAGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................GCTACTGCTGCCGGCACGCCGGGATC....2612.0022000000
...........................................................................................................................................................................................................................................................................................GCT---------GCTCCTTGGCCTTTGCG....................................2011.0011000000
........................................................................................................................................................................................................................................................................................GCTGCT---------GCTCCTTGGCCTTTGCGGT----G.............................2611.0011000000

Generated: 05/16/2015 at 09:39 PM