dvi_12791

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	-
Helitron-1N1_DVir	RC	Helitron	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:1242350-1242600 -	dvi_12791	TATCCTGTTTTTTGGG--T--AAT-----TTTGGTA-------AATAATTAAAGCTAGAGTGACCAAACTTGACAT-------------------------------------------A-----------------TAGCTTC-----------TAA-------------AA-T---AGAATATATA-T------GCA---TTTAATGTTG-GAAGAAG----------AGGGTTCAGGGTATCCCCTAGTCGGGAGCTCCCGA--------------------------------CTAGGACCTCTTACTTG--TTCTTTTATATTTTAGCCCATATTGTCCTGTACT------CTCTTTTCAGGCATT-ATGTTCAACT---------------------------------ACATTATACGATCGCTGCCCAGGTGGCTGC--AGCA----------------T
droMoj3	scaffold_6500:27488703-27488886 -		CATTTTAATTTGATT--------ATTTATTATAGTAG--AG-----ACT--------------------------T-ATGCCT---------------------------------------------TTTGAAATATGA----ATATCCAATT------------CTTAT----AAT-------------TA--------------------TAAGAAAAGTTCTTCAAGGTATCGAGGGTATCTACTAGTTGAGCGGTCTCGA--------------------------------CTTTACTTGCTTCACTAT-----TGTAAATCGCAATTAAAATCTCTTTG--CA------GCTT----------C-AT---------------------------------------GTA---------------------------------CA----------------A
droGri2	scaffold_15203:10916200-10916445 -		TATATATATATATATA--T--ATA-----TATATTA-------TAAGGAAAATGCTTGATCAACGA-----------TCACTCGATAAATTCCCCAGTGCCCCAATATTAGAA---TCTATATTTT--------------------------------ATTCT-----------------------------------A---TTTAATGCATTTAACAGC----------TGGGTTCAGGGTATCTCCTGGTTGAGTTCTCTCGA--------------------------------CTGAAGGATTTTTATTTTTATTTGTTGTGTTT--TT--------------------------------------TTTGT-----TGGTATTTTTGTTTCGCGTGTGTCAAACTTTCATGCAATATGCAA-----------------A--TGCTG----------------C
droWil2	scf2_1100000004909:1032564-1032698 +		GATTTTCT------------------------CAAACAC-------GTTACTACCTAGAGACACCAAATGGTACAT-------------------------------------------AT-----------------------ATGT------------------------------------------------GCA---TCTGT----------------------------------TATTATAA-------------------------------------------------------------------------------------------------------------------ATTTGGA-ATATTTGTTT---------------------------------TACTGGTGTATGGTATACCTAAGTCGGCGA--GACGACTTACTTATTCATTTA
dp5	Unknown_group_34:25508-25646 -		ATTAAGGCT-----------------------------------------------AGAGTAACCAAATTTGGTAC-------------------------------------------ACACACTCATCTG------CGAAAG-----------ATC-------------TG-T---AAAAC---------------------------------GAA----------------------------------------------AAATGTTCAATCCTTTTGTTGGATCGTTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------GTGTTT----------------T
droPer2	scaffold_570:7189-7304 -		TATTCACAAAT-------------------CTCGGAGAC-------CATTAAGGCTAGAGTAACCAAATTTGGTAT-------------------------------------------CCGCTCTCCTGTT------AGATCT-----------CAC-------------TA-T---AAAACGTATA-TCTCAA--TATTT---CGCAAAG-GAAGAA----------------------------------------------AACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------T
droAna3	scaffold_12943:4436601-4436699 -		TATCTTTTTGTCTATA--T--ATC-----TTTTA-----TTTAAATAATTAAAATTAAAATTACTAAAAAATGTCT-------------------------------------------A-----------------TAAATTT-----------TGA-------------TT-T---AAAATATGTT-T------CTA---TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT----------------T
droBip1	scf7180000396735:582175-582328 -		TCCAGCGTTACTTCATT-T--ATG-----TTTTT-----GGTAAATGATTT-----------------------------------------------------------------------------GATG------CCATAC-----------TTTTCCATACCTTTAAACAT---TAAT-----------------------TATGTTTGGAAGAGA----------TGAGTACCGGGTTTAATATGTCTGGAA-AACTCGG--------------------------------CTTAGCCATCCTTTCTTT--------------------------------------------------------T--------TT---------------------------------ATTT-------------------------CATCTAA----------------T
droKik1	scf7180000302469:923798-923908 +		GCTCACGGGT-----------------------------------------------AAGTCTCCCTGGTTATC-------------------CTTTAG------TTTTGGGATGTAATGTATCCT--------------------------------TTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGTC-ATGTTCAACT---------------------------------ACCTGATGCGCGTCTTCCCCAAATGGATCC--AGCA----------------T
droFic1	scf7180000454055:1001174-1001259 -		GGATGAGTGC----------------------AGAAAAC-------AATTAAATCTAAAATAGCCAAAAAACAGTC-------------------------------------------G-----------------AAACATT-----------TTA-------------AA-T---AAAAGATGTA-A------GCC---TTTCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA----------------G
droEle1	scf7180000491001:1200460-1200512 +		CAGGCATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCAACT---------------------------------ACCTTGTGAGGGTCCTGCCCAAGTGGATCC--AGCA----------------C
droRho1	scf7180000778111:5230-5326 +		TTTAATGGTTTTTAGG--A--TAT-----TT-TGTGC--AGTATATAA-----GCT------------------------------------------------------------------------ATTGACATGAAT----CTTTCCAAAT------------CGTAT----TTT-------------TTTATGCA---TTCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGAAGGT--AAAA----------------G
droBia1	scf7180000302193:2042025-2042121 +		ATTTAATCTA-----------------------------------------------ATATATTTCCATTCAT-----------------------------------------------------------------------ATTTCCACTTTTTTTCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGTA-ATGTTCAACT---------------------------------ATATTATGAGGTTTCTGCCCAAGTGGGTCC--AGCA----------------C
droTak1	scf7180000414505:20371-20513 -		GAAAAATTTTTTTAAATCGGACCA-----TTC-------GTTAAAAAGTTACGGC----GGATCAAAGTTTTT-----------------------------------------------------------------------AACTCCATCT--------------------------------------------CCTT---CGTAACGGAAGGAGC----------TGAGTAACGGGTATCTGATAGTCGGGG-CACCCGA--------------------------------CTATAGCGTTCT-----------CTTAT--------------------------------------------------------------------------------------------------------------------------GTTT---------------TA
droEug1	scf7180000408792:5878-6087 -		TGAAATCT------------------------CAGGAAC-------TATTAGAGCTAAAAAGTTCAAATTGGTGACGTCGCTT---------------------------------------------TGTG--------AATT-----------TCC-------------AC-TAGCAAAATTAATCTTTTTAA--AATTT---T---------GTAAA----------ACAGTAACGAGTATCTTAAAGTCGCGG-CACTCGA--------------------------------CTATACCGTTTCATCTTT--TTTTTAATCTACTTCTATAAATTATCCTAGCCA------GCCGCGTAAACTATT-ATATTGAAAT---------------------------------GC--------------------------------------------------A
dm3	chr2L:20068831-20068933 +		AAGATTGGTTTTATAT--------------TTTAAGCCT----------------------------------------------------------------------------------------CTTTA------AAGTTA-----------TCT-------------TA-TAGTTTAATGTATA-TTA------T---CTGCTT-GCTACAAGAGC----------AAAGTAGAGGGTATGTAATAGTCGCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:2620567-2620662 -		CAACCATATTTATTT---------------TTTG-GGAA-------GACAAATGGTAGAAT----------------------------------------------------------A------------------------------------------------------C---AAAATGAAAA-TATAAA------A---TGTGA-----------------------------GGTTGGAAACGT-----------------------------------------TTTG-----------------------------------------------------------------------------------------------A----------ATCAAATTTACATA---------------------------------CA----------------T
droSec2	scaffold_7712:1567-1639 +		TATTATGTTATATTAT--A--TTA-----TAT---------------------------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTTATATT------ATATTATATTATATT-ATATTATATT---------------------------------ATATT-------------------------ATACTA----------------T
droYak3	2L:8765736-8765829 +		TCTCTTGTTTTTTTTC--G--AAT-----TTT-------------------------------------------------------------TCAAAA------CCTAAAGGTGATATGCACTTTGTTTTA------CAGGTT-----------TCT-------------TC-CAACACAATAGAAA-TCA------T---CTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT----------------A
droEre2	scaffold_4820:1061740-1061871 +		GGGCGCTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------CTTAGCCGCCTTTTCTG--GCCTTTTATGTTTTGGCTGGTATTTCCTTT--TGGCCAACCCCTATACAGTCATT-CCTTTTTTTTTTAATTTTCG----------CCCGAGT--------------------TTGCACAAGTTGCCCCATGCCA----------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TATCCTGTTTTTTGGG--T--AAT-----TTTGGTA-------AATAATTAAAGCTAGAGTGACCAAACTTGACAT-------------------------------------------A-----------------TAGCTTC-----------TAA-------------AA-T---AGAATATATA-T------GCA---TTTAATGTTG-GAAGAAG----------AGGGTTCAGGGTATCCCCTAGTCGGGAGCTCCCGA--------------------------------CTAGGACCTCTTACTTG--TTCTTTTATATTTTAGCCCATATTGTCCTGTACT------CTCTTTTCAGGCATT-ATGTTCAACT---------------------------------ACATTATACGATCGCTGCCCAGGTGGCTGC--AGCA----------------T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................TTGACAT-------------------------------------------A-----------------TAGCTTC-----------TAA-------------AA-T---AGAA..............................................................................................................................................................................................................................................................................................	25	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TATATA-T------GCA---TTTAATGTTG-GAAG...........................................................................................................................................................................................................................................................	24	20	0.30	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TTGACAT-------------------------------------------A-----------------TAGCTTC-----------TAA-------------AA-T---AGA...............................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................TG-GAAGAAG----------AGGGTTCAGGGTATCCC.............................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TATATA-T------GCA---TTTAATGTTG-GA.............................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GTATCCCCTAGTCGGGAGCTC...............................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TG-GAAGAAG----------AGGGTTCAGGGTATCCCCT...........................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTGGG--T--AAT-----TTTGGTA-------AATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TTG-GAAGAAG----------AGGGTTCAGGGTAT................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TATATA-T------GCA---TTTAATGTTG-GAAGAAG----------..............................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TATATA-T------GCA---TTTAATGTTG-GAAGA..........................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTTAATGTTG-GAAGAAG----------AGGG..........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................ACTTGACAT-------------------------------------------A-----------------TAGCTTC-----------TA.......................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TATATA-T------GCA---TTTAATGTTG-GAA............................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AATGTTG-GAAGAAG----------AGGG..........................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TGACAT-------------------------------------------A-----------------TAGCTTC-----------TAA-------------AA-T---AGAATAT...........................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTAATGTTG-GAAGAAG----------AGGGTT........................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CATTTTAATTTGATT--------ATTTATTATAGTAG--AG-----ACT--------------------------T-ATGCCT---------------------------------------------TTTGAAATATGA----ATATCCAATT------------CTTAT----AAT-------------TA--------------------TAAGAAAAGTTCTTCAAGGTATCGAGGGTATCTACTAGTTGAGCGGTCTCGA--------------------------------CTTTACTTGCTTCACTAT-----TGTAAATCGCAATTAAAATCTCTTTG--CA------GCTT----------C-AT---------------------------------------GTA---------------------------------CA----------------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................GCAATTAAAATCTCTTTG--CA------G...............................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droGri2

TATATATATATATATA--T--ATA-----TATATTA-------TAAGGAAAATGCTTGATCAACGA-----------TCACTCGATAAATTCCCCAGTGCCCCAATATTAGAA---TCTATATTTT--------------------------------ATTCT-----------------------------------A---TTTAATGCATTTAACAGC----------TGGGTTCAGGGTATCTCCTGGTTGAGTTCTCTCGA--------------------------------CTGAAGGATTTTTATTTTTATTTGTTGTGTTT--TT--------------------------------------TTTGT-----TGGTATTTTTGTTTCGCGTGTGTCAAACTTTCATGCAATATGCAA-----------------A--TGCTG----------------C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GATTTTCT------------------------CAAACAC-------GTTACTACCTAGAGACACCAAATGGTACAT-------------------------------------------AT-----------------------ATGT------------------------------------------------GCA---TCTGT----------------------------------TATTATAA-------------------------------------------------------------------------------------------------------------------ATTTGGA-ATATTTGTTT---------------------------------TACTGGTGTATGGTATACCTAAGTCGGCGA--GACGACTTACTTATTCATTTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................................................................TTTGTTT---------------------------------TACTGGTGTATGGT.......................................	21	20	0.30	6	0	5	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTAAGTCGGCGA--GAC..................	19	20	0.15	3	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TATTTGTTT---------------------------------TACTGGTGTATGGTA......................................	24	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACCTAAGTCGGCGA--GACGAC...............	25	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................TTGTTT---------------------------------TACTGGTGTATGGTATACC..................................	25	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGTATACCTAAGTCGGCGA--GACGA................	28	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................TTGTTT---------------------------------TACTGGTGTATGGTA......................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTTGTTT---------------------------------TACTGGTGTATGG........................................	20	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTAAGTCGGCGA--GACGACT..............	23	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................A-ATATTTGTTT---------------------------------TACTGGTGTATGGTATA....................................	28	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGTTT---------------------------------TACTGGTGTATGGTATA....................................	22	20	0.05	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATGGTATACCTAAGTCGGCGA--.....................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................ATATTTGTTT---------------------------------TACTGGTGTATGGT.......................................	24	20	0.05	1	0	0	0	1	0

dp5

ATTAAGGCT-----------------------------------------------AGAGTAACCAAATTTGGTAC-------------------------------------------ACACACTCATCTG------CGAAAG-----------ATC-------------TG-T---AAAAC---------------------------------GAA----------------------------------------------AAATGTTCAATCCTTTTGTTGGATCGTTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------GTGTTT----------------T	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	25	19	44.16	839	0	631	1	2	0	1	2	168	33	1
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------T................................................................................................	24	19	9.26	176	0	153	0	0	0	0	2	15	6	0
...............................................................................................................................................................................................................................................................................TCAATCCTTTTGTTGGATCGTTGGGGC..........................................................................................................................................................................	27	1	7.00	7	0	2	0	0	0	0	0	1	4	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	24	19	4.47	85	0	84	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	26	18	4.33	78	0	68	0	1	0	0	0	6	3	0
.........................................................................................................................................................................................................................................................................................TGTTGGATCGTTGGGGCTCAACCC...................................................................................................................................................................	24	3	4.00	12	0	11	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----.......................................................................................	28	19	2.63	50	0	32	0	0	0	0	0	16	2	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTT..............................................................................................	26	19	1.89	36	0	23	0	0	0	0	0	10	3	0
......................................................................................................................................................................................................................................................................................................................TCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTC.........................................................................	24	14	1.86	26	0	14	0	0	0	0	0	8	4	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------T................................................................................................	25	18	1.83	33	0	29	0	0	0	0	1	3	0	0
........................................................................................................................................................................................................................................................................................................................TG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------GTG....................	26	3	1.33	4	0	1	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGT...........................................................................	27	14	1.14	16	0	5	0	0	0	0	0	7	4	0
......................................................................................................................................................................................................................................................................................................................TCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------G......................	26	13	1.08	14	0	6	0	0	0	0	0	4	4	0
............................................................TAACCAAATTTGGTAC-------------------------------------------ACACACTCA....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TGTTCAATCCTTTTGTTGGATCGTT...............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................TTCAATCCTTTTGTTGGATCGTTGGGT...........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------.................................................................................................	23	19	0.84	16	0	14	0	0	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATCTG--T------------------------------------------------------T................................................................................................	23	19	0.84	16	0	16	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----.......................................................................................	25	20	0.80	16	0	16	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTA.............................................................................................	27	19	0.74	14	0	9	0	0	0	0	0	4	1	0
.........................................................................................................................................................................................................................................................................................TGTTGGATCGTTGGGGCTCAACC....................................................................................................................................................................	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGTTGGATCGTTGGGGCTCAAC.....................................................................................................................................................................	22	3	0.67	2	0	1	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	22	20	0.65	13	0	13	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATG............................................................................	26	14	0.64	9	0	2	0	0	0	0	0	6	1	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTA..............................................................................................	26	19	0.63	12	0	9	0	1	0	0	0	2	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--........................................................................................................................................................	22	19	0.63	12	0	12	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TCGTTGGGGCTCAACCCTCCGATC............................................................................................................................................................	24	15	0.60	9	0	9	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TG.....................................................................................	24	20	0.55	11	0	11	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------.................................................................................................	24	18	0.44	8	0	8	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGT...........................................................................	22	14	0.43	6	0	2	0	0	0	0	0	1	3	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCCTCCGAT.............................................................................................................................................................	27	15	0.40	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TTTTGTTGGATCGTTGGGGC..........................................................................................................................................................................	20	5	0.40	2	0	0	0	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................................................................................................CCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	25	15	0.40	6	0	6	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TG.....................................................................................	25	20	0.35	7	0	7	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GGGCTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	23	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGTTGGATCGTTGGGGCTCAACCCTC.................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGA..................................................................................	27	15	0.33	5	0	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTGGATCGTTGGGGCTCAACC....................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGTTGGATCGTTGGGGCTCAACCCTCC................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................TTGGATCGTTGGGGCTCAACCCTCC................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTGTTGGATCGTTGGGGCTCAAC.....................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCCTCCGA..............................................................................................................................................................	26	15	0.33	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................G--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------GTG....................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TGTGATTTATGTTCT-------------------------------------------------GTGTT..................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGTTGGATCGTTGGGGCTCAA......................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GTTGGATCGTTGGGGCTCAACCC...................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTGGATCGTTGGGGCTCAACCCTCCGA..............................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................CAATCCTTTTGTTGGATCGTTGGGGC..........................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTGTTGGATCGTTGGGGCTCAACC....................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTTGTTGGATCGTTGGGGCTCAACCC...................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATC............................................................................................................................................................	20	19	0.32	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTAT.............................................................................	25	14	0.29	4	0	0	0	0	0	0	0	0	4	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTAA.............................................................................	25	14	0.29	4	0	0	0	0	0	0	0	4	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTC.........................................................................	29	14	0.29	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	29	15	0.27	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	27	15	0.27	4	0	3	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCCTCCG...............................................................................................................................................................	25	15	0.27	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GCTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	21	20	0.25	5	0	4	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TAT-----TGTGATTTATGTTCT-------------------------------------------------GT.....................	20	13	0.23	3	0	1	0	0	0	0	0	2	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TTTAT-----TGTGATTTATGTTCT-------------------------------------------------G......................	21	13	0.23	3	0	0	0	0	0	0	0	3	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TA...............................................................................................	25	19	0.21	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCT...........................................................................................................................................................	21	19	0.21	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------T................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	28	15	0.20	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTTGTTGGATCGTTGGGGT..........................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	26	15	0.20	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCCT..................................................................................................................................................................	22	15	0.20	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TTTTGTTGGATCGTTGGG............................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCCTC.................................................................................................................................................................	23	15	0.20	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	22	16	0.19	3	0	2	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGATCTG--........................................................................................................................................................	23	18	0.17	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGATC............................................................................................................................................................	21	18	0.17	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------A................................................................................................	24	19	0.16	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----.......................................................................................	27	19	0.16	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTT..............................................................................................	25	19	0.16	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TAT-----TGTGATTTATGTTCT-------------------------------------------------G......................	19	13	0.15	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------G......................	24	13	0.15	2	0	2	0	0	0	0	0	0	0	0
..TAAGGCT-----------------------------------------------AGAGTAACCAAATTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCAACCCTCCGATCTG--T------------------------------------------------------TTTA.............................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTG...................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.........................................................................................................................................................................................................................................................................................................CTCAACCCTCCGATCTG--T------------------------------------------------------TTT..............................................................................................	21	20	0.15	3	0	2	0	0	0	0	0	0	1	0
........T-----------------------------------------------AGAGTAACCAAATTTGGTAC-------------------------------------------ACACA........................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	2	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................CCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGT...........................................................................	26	14	0.14	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTT..........................................................................	23	14	0.14	2	0	1	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................ATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTC.........................................................................	25	14	0.14	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................TCTG--T------------------------------------------------------TTTAT-----TGTGATTTATG............................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------.......................	25	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTA..............................................................................	24	14	0.14	2	0	1	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................CCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	24	15	0.13	2	0	1	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTT...............................................................................	23	15	0.13	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................AACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGAT.................................................................................	26	15	0.13	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTT...............................................................................	24	15	0.13	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGAT.................................................................................	28	15	0.13	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCCTCC................................................................................................................................................................	24	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATC............................................................................................................................................................	19	19	0.11	2	0	2	0	0	0	0	0	0	0	0
................................................................CAAATTTGGTAC-------------------------------------------ACACACTC.....................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CAACCCTCCGATCTG--T------------------------------------------------------TTT..............................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................CTCAACCCTCCGATCTG--T------------------------------------------------------TTTA.............................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTA.............................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----.......................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................GAGTAACCAAATTTGGTAC-------------------------------------------ACACACT......................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................T-----TGTGATTTATGTTCT-------------------------------------------------G......................	17	13	0.08	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................TTTAT-----TGTGATTTATGTTCT-------------------------------------------------GT.....................	22	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------G......................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................G--T------------------------------------------------------TTTAT-----TGTGATTTATGTTCT-------------------------------------------------G......................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATG............................................................................	27	14	0.07	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTAA.........................................................................	29	14	0.07	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................CTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTC.........................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CCGATCTG--T------------------------------------------------------TTTAT-----TGTGATTTATGTTC.........................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCC...................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GTTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ATCGTTGGGGCTCAACCCTCCGATC............................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TCGTTGGGGCTCAACCCTCCGATCTG--........................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GATCGTTGGGGCTCAACC....................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TCGTTGGGGCTCAACCCTCCGA..............................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TGGATCGTTGGGGCTCAACCCTT.................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GGATCGTTGGGGCTCAACCCTCCG...............................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GGATCGTTGGGGCTCAACCCTCCGA..............................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGAT.................................................................................	22	15	0.07	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................GATCGTTGGGGCTCAACCCTC.................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ATCGTTGGGGCTCAACCCTCCGAT.............................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GTTGGGGCTCAACCCTCCGATC............................................................................................................................................................	22	15	0.07	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GGATCGTTGGGGCTCAACCCTCC................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTGAA.................................................................................	29	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGATCTG--T------------------------------------------------------TTTAT-----TGTGAT.................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................CCGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGATCTG--T------------------------------------------------------TTTAT-----TGTGATT................................................................................	20	16	0.06	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGT..............................................................................................................................................................	19	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----.......................................................................................	29	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGAA.............................................................................................................................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTA..............................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TTGGGGCTCAACCCTCCGA..............................................................................................................................................................	19	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGT....................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTA.............................................................................................	26	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGAA.............................................................................................................................................................	19	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGATCTG--T------------------------------------------------------C................................................................................................	24	19	0.05	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATCTG--........................................................................................................................................................	21	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGGGCTCAACCCTCCGATCTG--T------------------------------------------------------TA...............................................................................................	24	19	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TGGGGCTCAACCCTCCGA..............................................................................................................................................................	18	19	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GGGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----.......................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------.................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTG...................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CAACCCTCCGATCTG--T------------------------------------------------------TT...............................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCAACCCTCCGATCTG--T------------------------------------------------------TTT..............................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................GGGCTCAACCCTCCGATCTG--........................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......CT-----------------------------------------------AGAGTAACCAAATTTGGTAC-------------------------------------------ACAC.........................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAT-----T......................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......CT-----------------------------------------------AGAGTAACCAAATTTGGTAC-------------------------------------------ACACAC.......................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........T-----------------------------------------------AGAGTAACCAAATTTGGTAC-------------------------------------------ACACACTC.....................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------TTTAA-----.......................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................TAACCAAATTTGGTAC-------------------------------------------ACACACTC.....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GGGCTCAACCCTCCGATCTG--T------------------------------------------------------.................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................AACCCTCCGATCTG--T------------------------------------------------------TTTAT-----TGTC...................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................GCTCAACCCTCCGATCTG--T------------------------------------------------------TTT..............................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GCTCAACCCTCCGATCTG--T------------------------------------------------------T................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....GGCT-----------------------------------------------AGAGTAACCAAATTTGGTAC-------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CTCAACCCTCCGATCTG--T------------------------------------------------------T................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCTCAACCCTCCGATCTG--T------------------------------------------------------TTT..............................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................CCAAATTTGGTAC-------------------------------------------ACACACT......................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TATTCACAAAT-------------------CTCGGAGAC-------CATTAAGGCTAGAGTAACCAAATTTGGTAT-------------------------------------------CCGCTCTCCTGTT------AGATCT-----------CAC-------------TA-T---AAAACGTATA-TCTCAA--TATTT---CGCAAAG-GAAGAA----------------------------------------------AACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TATCTTTTTGTCTATA--T--ATC-----TTTTA-----TTTAAATAATTAAAATTAAAATTACTAAAAAATGTCT-------------------------------------------A-----------------TAAATTT-----------TGA-------------TT-T---AAAATATGTT-T------CTA---TTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTT----------------T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TCCAGCGTTACTTCATT-T--ATG-----TTTTT-----GGTAAATGATTT-----------------------------------------------------------------------------GATG------CCATAC-----------TTTTCCATACCTTTAAACAT---TAAT-----------------------TATGTTTGGAAGAGA----------TGAGTACCGGGTTTAATATGTCTGGAA-AACTCGG--------------------------------CTTAGCCATCCTTTCTTT--------------------------------------------------------T--------TT---------------------------------ATTT-------------------------CATCTAA----------------T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTCACGGGT-----------------------------------------------AAGTCTCCCTGGTTATC-------------------CTTTAG------TTTTGGGATGTAATGTATCCT--------------------------------TTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGTC-ATGTTCAACT---------------------------------ACCTGATGCGCGTCTTCCCCAAATGGATCC--AGCA----------------T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGATGAGTGC----------------------AGAAAAC-------AATTAAATCTAAAATAGCCAAAAAACAGTC-------------------------------------------G-----------------AAACATT-----------TTA-------------AA-T---AAAAGATGTA-A------GCC---TTTCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA----------------G	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGGCATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCAACT---------------------------------ACCTTGTGAGGGTCCTGCCCAAGTGGATCC--AGCA----------------C	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTAATGGTTTTTAGG--A--TAT-----TT-TGTGC--AGTATATAA-----GCT------------------------------------------------------------------------ATTGACATGAAT----CTTTCCAAAT------------CGTAT----TTT-------------TTTATGCA---TTCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGAAGGT--AAAA----------------G	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTTAATCTA-----------------------------------------------ATATATTTCCATTCAT-----------------------------------------------------------------------ATTTCCACTTTTTTTCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGTA-ATGTTCAACT---------------------------------ATATTATGAGGTTTCTGCCCAAGTGGGTCC--AGCA----------------C	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAAAAATTTTTTTAAATCGGACCA-----TTC-------GTTAAAAAGTTACGGC----GGATCAAAGTTTTT-----------------------------------------------------------------------AACTCCATCT--------------------------------------------CCTT---CGTAACGGAAGGAGC----------TGAGTAACGGGTATCTGATAGTCGGGG-CACCCGA--------------------------------CTATAGCGTTCT-----------CTTAT--------------------------------------------------------------------------------------------------------------------------GTTT---------------TA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGAAATCT------------------------CAGGAAC-------TATTAGAGCTAAAAAGTTCAAATTGGTGACGTCGCTT---------------------------------------------TGTG--------AATT-----------TCC-------------AC-TAGCAAAATTAATCTTTTTAA--AATTT---T---------GTAAA----------ACAGTAACGAGTATCTTAAAGTCGCGG-CACTCGA--------------------------------CTATACCGTTTCATCTTT--TTTTTAATCTACTTCTATAAATTATCCTAGCCA------GCCGCGTAAACTATT-ATATTGAAAT---------------------------------GC--------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAGATTGGTTTTATAT--------------TTTAAGCCT----------------------------------------------------------------------------------------CTTTA------AAGTTA-----------TCT-------------TA-TAGTTTAATGTATA-TTA------T---CTGCTT-GCTACAAGAGC----------AAAGTAGAGGGTATGTAATAGTCGCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................AGC----------AAAGTAGAGGGTATG...............................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAACCATATTTATTT---------------TTTG-GGAA-------GACAAATGGTAGAAT----------------------------------------------------------A------------------------------------------------------C---AAAATGAAAA-TATAAA------A---TGTGA-----------------------------GGTTGGAAACGT-----------------------------------------TTTG-----------------------------------------------------------------------------------------------A----------ATCAAATTTACATA---------------------------------CA----------------T	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................GGAA-------GACAAATGGTAGAAT----------------------------------------------------------A------------------------------------------------------C---A.................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............T---------------TTTG-GGAA-------GACAAATGGTAGAAT----------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................AA------A---TGTGA-----------------------------GGTTGGAAAC...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................CAAATGGTAGAAT----------------------------------------------------------A------------------------------------------------------C---AAAATG............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................A-TATAAA------A---TGTGA-----------------------------GGTTGGAA.............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................TTG-GGAA-------GACAAATGGTAGAAT----------------------------------------------------------A------------------------------------------------------C---AAA...............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

TATTATGTTATATTAT--A--TTA-----TAT---------------------------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTTATATT------ATATTATATTATATT-ATATTATATT---------------------------------ATATT-------------------------ATACTA----------------T	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TCTCTTGTTTTTTTTC--G--AAT-----TTT-------------------------------------------------------------TCAAAA------CCTAAAGGTGATATGCACTTTGTTTTA------CAGGTT-----------TCT-------------TC-CAACACAATAGAAA-TCA------T---CTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT----------------A

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GGGCGCTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA--------------------------------CTTAGCCGCCTTTTCTG--GCCTTTTATGTTTTGGCTGGTATTTCCTTT--TGGCCAACCCCTATACAGTCATT-CCTTTTTTTTTTAATTTTCG----------CCCGAGT--------------------TTGCACAAGTTGCCCCATGCCA----------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_12791

scaffold_12970:1242400-1242550 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

ATAGGACAAAAAACCCATTAAAACCATTTATTAATTTCGATCTCACTGGTTTGAACTGTATATCGAAGATTTTATCTTATATATACGTAAATTACAACCTTCTTCTCCCAAGTCCCATAGGGGATCAGCCCTCGAGGGCTGATCCTGGAGAATGAACAAGAAAATATAAAATCGGGTATAACAGGACATGAGAGAAAAGTCCGTAATACAAGTTGATGTAATATGCTAGCGACGGGTCCACCGACGTCGTA *******************************************************************************************************************************.((.((((((..(((((...)))))..))))))))..................((((.......)))).***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060658 140_ovaries_total	SRR060678 9x140_testes_total	SRR060681 Argx9_testes_total	SRR060668 160x9_males_carcasses_total	V053 head	SRR060674 9x140_ovaries_total	SRR060683 160_testes_total	SRR060684 140x9_0-2h_embryos_total	SRR060680 9xArg_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR060676 9xArg_ovaries_total	SRR060682 9x140_0-2h_embryos_total	M027 male body	SRR060654 160x9_ovaries_total	M028 head	GSM1528803 follicle cells	SRR060655 9x160_testes_total	SRR060670 9_testes_total	SRR060675 140x9_ovaries_total	SRR060679 140x9_testes_total	SRR060689 160x9_testes_total	SRR060663 160_0-2h_embryos_total	SRR060669 160x9_females_carcasses_total	SRR060673 9_ovaries_total	SRR060688 160_ovaries_total	SRR1106729 mixed whole adult body
...................................................................................................................................................................................AACGGGACCTGAGAGAAAAGT...................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACCATTTATTAATTTCGATCTCAC.............................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................CGAAGATTTTATCTTATATATACGT...................................................................................................................................................................	25	0	20	0.80	16	2	0	3	0	0	0	4	0	0	0	0	4	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0
................................................................................................................................................CTGGTGAATGAACAAGGAAA.......................................................................................	20	2	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACTGTATAT............................................................................................................................................................................................	18	0	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACTGTATATCGAAGATT....................................................................................................................................................................................	26	0	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TGTAATCTGCTAGCGGCAGGT..............	21	3	5	0.20	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACTGTATATCGAAGAT.....................................................................................................................................................................................	25	0	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACTGTATATCGAAGA......................................................................................................................................................................................	24	0	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TCGAAGATTTTATCTTATATATACGT...................................................................................................................................................................	26	0	20	0.20	4	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ACAAGTTGGTCTAATATG..........................	18	2	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................ATCGAAGATTTTATCTTATATATACGT...................................................................................................................................................................	27	0	20	0.15	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TATCGAAGATTTTATCTTATATATACGT...................................................................................................................................................................	28	0	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0
.........................................................................................................TCCCAAGTCCCATAGGGGAT..............................................................................................................................	20	0	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
....GACAAAAAACCCATTAAAACCATTT..............................................................................................................................................................................................................................	25	0	16	0.13	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACTGTTTATCGAAGA......................................................................................................................................................................................	24	1	16	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGCTTACGACGGGTCAACCGAC......	22	3	8	0.13	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAAGTGTATATCGAAGA......................................................................................................................................................................................	24	1	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACAGTATATCGAAGA......................................................................................................................................................................................	24	1	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACAGTATATCGAAGAT.....................................................................................................................................................................................	25	1	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AGGACAAAAAACCCATTAAAACCATTT..............................................................................................................................................................................................................................	27	0	14	0.07	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGAATATGCTCGGGACGGG...............	19	3	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................CCTGGTTTGAACTGTATAT............................................................................................................................................................................................	19	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................................CCTGCTTTGAACTGTATAT............................................................................................................................................................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................TATCGAAGATTTTATCTTGTATATACGT...................................................................................................................................................................	28	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CCGGTTTGAACTGTATAT............................................................................................................................................................................................	18	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................GAAGATTTTATCTTATAGATACGT...................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CGGAACCTGGAGATTGAA...............................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TGGTTTGAACTGTATATCGAAGAT.....................................................................................................................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................ACTGGTTTGAACTGTGTAT............................................................................................................................................................................................	19	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TCCCAAGTCCCATAGGGGA...............................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ACGTAAATTACAACCTTCTTC..................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................CGATCTCACTGGCTTGAACTGTATAT............................................................................................................................................................................................	26	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................ATATACGTAAATTACAACCTTCTTCT.................................................................................................................................................	26	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GGACAAAAGACCCATTAAAAC...................................................................................................................................................................................................................................	21	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TATAAAGTCGGGTATA.......................................................................	16	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................AGATTTTATCTTATATATACGT...................................................................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................CCATAGGGGATCAGCCCTCGAGGGCT...............................................................................................................	26	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CTGGTTTGAACTGTGTATCGAAGA......................................................................................................................................................................................	24	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................TACCGAAGATTTTATCTTATATATACGT...................................................................................................................................................................	28	1	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

-9.9	-9.7	-9.7