ID:

dvi_12784

 Coordinate:

scaffold_12970:1190356-1190506 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.8 -21.4 -21.4

Flybase annnotation

CDS [Dvir\GJ19056-cds]; exon [dvir_GLEANR_3870:2]; intron [Dvir\GJ19056-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGCAACGATTCGTCCTGGCACCGTTTTGTTAGTTCTTCATGCATCGAAGGTAAGTGCAACAACAGCAGCAATAACAACAGCAGCACATGAGCAACAGCGACAATATCAACAACAATCGCACGCTGATTCATTAAAACATTCGTCGCGCTGCTGCTTATAAAATTCCGCACAAATCGCACGCCCATTCACAATGATTCATAAGTCACAGTCGCAACGTCATCGCCAGATTTCTCCAAGTATCTTAATCAGC
**************************************************....((((.......((............(((((((.....((....((((((((.........(((((.....))))).........))).))))))))))))))...........)).......)))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 M061
embryo
 SRR1106730
embryo_16-30h
 M028
head
 V047
embryo
 SRR060681
Argx9_testes_total
 M027
male body		 SRR060657
140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
.....................................................................................................................................AAAACATTCGGCCCGCTGGTGC................................................................................................ 22 3 4 1.75 7 2 0 4 0 0 1 0 0 0 0 0
....................................................................................................................................TAAAACATTCGGCCCGCTGGTGC................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................ACAACAGCAGCACATGAGC.............................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................CCGTTTTGTTAGTTCTTCATGCATC............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGTCCCATCGTCATCGCCA......................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
..........................................CATCGAAGGTAAGGACTACA............................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.......GGTTCGTCCTGTCACGGT.................................................................................................................................................................................................................................. 18 3 20 0.25 5 0 0 0 0 0 0 2 1 0 1 1
....................................................................................................................................TAAAACACTGGTCACGCTGC................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
........................................................GCTAGAAGAGCAGCAATAACA.............................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
......................CGTTTTGTTAGTTGTTCCAG................................................................................................................................................................................................................. 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GTAAAACATTCGGCCCGCT..................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACCGTTGCTAAGCAGGACCGTGGCAAAACAATCAAGAAGTACGTAGCTTCCATTCACGTTGTTGTCGTCGTTATTGTTGTCGTCGTGTACTCGTTGTCGCTGTTATAGTTGTTGTTAGCGTGCGACTAAGTAATTTTGTAAGCAGCGCGACGACGAATATTTTAAGGCGTGTTTAGCGTGCGGGTAAGTGTTACTAAGTATTCAGTGTCAGCGTTGCAGTAGCGGTCTAAAGAGGTTCATAGAATTAGTCG
**************************************************....((((.......((............(((((((.....((....((((((((.........(((((.....))))).........))).))))))))))))))...........)).......)))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060666
160_males_carcasses_total
 M027
male body		 M028
head
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 M061
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 V053
head
 SRR060665
9_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR1106713
embryo_0-2h
 SRR1106714
embryo_2-4h
 SRR060667
160_females_carcasses_total
..............................................................................................................................................................................................................................CGGTCTTAAGAGTTGCATAG......... 20 3 7 15.86 111 8 17 11 10 2 7 6 6 6 4 5 4 4 4 1 0 3 3 2 2 2 1 1 1 1 0
............................................................................................................................................................CTATTTTAAGGCGTGTTTA............................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGCACTAGCGGTCTGAAG................... 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGGTTGTCGCTGTTATGGTGGTTG......................................................................................................................................... 24 3 8 1.00 8 6 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTCAAGTTGTTGTCGTCCTTA.................................................................................................................................................................................. 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGGTCTTAAGAGTTTCATA.......... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCGGTCTTAAGAGTTGCATAG......... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CATTTTGTAAGCCGGGCGAC.................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTTAAGAGGCTCACAGAAT...... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GTTGTCGCTGTTATGGTGGTTG......................................................................................................................................... 22 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGCAGTAGGGGTGTAAGGAG................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GGTTGTCGCTGTTATGGTGGTTG......................................................................................................................................... 23 3 13 0.15 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GCACTATTTTAAGGCGTGTT.............................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTTGTCGCTGTTATGGTGGTT.......................................................................................................................................... 21 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CCGGTCTTAAGAGTTTCAT........... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CGTTATGGTTGTCGTAGTG.................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TGGTTGTCGCTGTTATGGTGGT........................................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TAAGTAATTTCGTGAGAAG.......................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGGTCTTAAGAGATGCATA.......... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1190306-1190556 - dvi_12784 TGGCA-----AC-----------G--ATTCG------TCCTGGCACCGTTTTGTTAG---------------------------------TTCTTCATGCATCG---AAGGTAAGTGC---------------------------AACAACAGCAGCAATAACAACAG--------------------CAGCA-----------------------------------------------------------------------------------------------------------------CATGAGCAACAGCGACAATATCAACAACAATCGCACGCTGATTCAT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------------AC-----------------------ATTCGTCGCGCTGCTGC---------T-------------TATAA-AATTCCGCACAAATCG------------------------------------------------------CACGCCCATTCAC---AATGATTCATA-A------GT------------CACAGTCG---------------C-----AACG-------------TCATCGCCAGATTT----CTC-----------------CAAGTATCTTAATCAGC
droMoj3 scaffold_6308:1203827-1204078 + TGGCA-----AC-----------A--CATCG------TCCTGGCAACGCTATGTAAA---------------------------------TTCTTCATGCATCG---AAGGTGAGTCC---------------------------AACAA---------------CAA-----------CAACAACAACAACAA---CA---ACAAC----------------------------------------------------------------------------------------------------------------------AACAGCAGCAACTTGATCTGATTC-AT-----------------------------------------------------------------------------GC------------------------------------------------------------------------------------------------------------ATATAAAT--------------------------------------TCGCTGTGCCGTTGT---------T-------------TATAAGAATTCCGCGCAAATCG------------------------------------------------------CACGCTCATTCAC---AATGATTCATC-A------GT------------CACAGTTGTCGTCGTCGTCGTCGC-----GACG-------------TCATCGTCAGATTT----CTC----------------CAAAGTAACTTAATCAGC
droGri2 scaffold_15081:1785098-1785346 - TGTCT-----CG-----------G--ATTCG------ACCTGGCATCGTTTTGTCAC---------------------------------TTCTTCATGCATCG---AAGGTAAGTGCCACACGTGCCA--CACG----------AG-----------------------------------------CCACAC---A-----------------------------------------------------------------------TGCAACATACCC-CAC-----------ACTCCACTGAAAGCATCAG---C------AG-AAAAACACTCGCT----GATTCAT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGT---------------TAGCA-----------------------G------TGC---------T-------------TATAA-AATTCCGCGCAAATCG------------------------------------------------------CTGG--------C---AGTGATTCATCCA------CT------------CACAGTCGGAGT--------TCGCGCAACAACG-------------TCTTAATCAGATTT----TGG----------------CCG------ACCAACCGT
droWil2 scf2_1100000004921:1301128-1301377 + CAGCA-----AC-----------A--GC---------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCACCACCACCACCAA-----CATCAT---CATCACCACCA------TC-----------------------------------------------------------------------------AGCAACAACAACA--A------CATGAGCCACAACAACAATTACAACAACAAACACAT-------------------------------------------------------------------T-ATGTTCCACAATTGTATTATCCAACGCACTGGATGCAG---CAACAG---CAACAGCAGCAGCAGCAGGTATCAAACAACGAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------------------------------------------------------------TACAACCA---------------C-----AACA-------------GCAGCAACCAATCC----CAGTTGCCCAAGTTTATAGCCT------ACC-AGAAG
dp5 XR_group8:1662978-1663235 + TGGCA-----GT-----------G--GCAGC--ACCA--GTGGCGTGAA-----------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------GCCTGGGCCCTGCAGCAGCA-GCAAC---------AGACGGCAGCGTTGCACCACCACCAGCAGCAACAGCAGCA--A------------------------------CAGCAACAGCA------------------G-------------CA-----------------------ACATTTACA-AC-AGCAGCAGCAGGCGC-ATGC--------------AC----------------------------------------------------------------------------------------------ACCAGCAACAT-------------------------------G------CTGCCGCTGTGGCTGCCGCGCAGATCCAGCAGC------------------------------------------------AACAACAC----------ACACATCACGCTCA-------ACAGCA-----------TGCCGCTGCC-C---------AGCAGCAG---------------C-----AGCA-------------CCACCATCCCC---ATG-------------------------------GACCGCC
droPer2 scaffold_0:9637052-9637308 - CGCCC-----AC-----------A--CCACC--TA--CGCCGCCGCCACCTCTCTAC---------------------------------TCCCATACGCCCTCGCTGTGGCAGACGCCGCTCATTCTGGACATCAGCC------AGAAGCAGCAGCAGCCGCAGCAC-----CCGTACCAGC------AG------CA---GCAGA----------------------------------------------------------------------------------------------------------------------ACCATCATCAGCTCCAGGCTGTGTCCATTTCATTGGCCAGTCCGCCTACA-----------------------TCGCCCGCC-TC-GTTACCCTCGCCCAC-TCTG--------------ACACCCA------CAGCAGCT------------------------------GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCGCCA---------------T-----GGTG-------------TCACCGATTGT---CTCG-------------------------------CCCAAG
droAna3 scaffold_12929:312480-312662 + TGCCACCGACAT--GCAACGCTA----------------------------TGTG-----CAACG---------------CATGCAACA--------------------------------------------CC----------AGCAG---------------CAG-----------CAGCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGAATCGCACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATGAGTGGCATTGCCACG---CAGCAGCACTTGCCACAA---------------------------------------------------------------------------------------------------ATGGATGCAC------------AGTACACG---AGCA-----------TGC------------------CGCGGCCG---------------C-----TGCA-------------CCATCAGCAG-------------------------------------------AT
droBip1 scf7180000396360:488537-488670 - GCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------AGCATCAACATCAG-----CAGCATCAAC---------------------AAC-----------------------------------------------------------------------------------------A--GCAGCAACATCAACAA------------------------------------------------------------------------------------CATCGGGA-AT-GTTTTCAACAATTTC-TTAT--------------GCAA---CCGAAG---CAACAGCAGC---------------------------------------------------------CA--------------------------------------------------------------ACTGC---------TGCTGAAAATTTGCAAC------------------------------------------------GATTGCAC----------ACT------------------------------------------------------------------------------------------------------------------------------------------------------------C
droKik1 scf7180000302621:77550-77764 + TGGAC-----CA--ACG---------TCCCA---TCA--TTTGCATCAA-TCATCAG------TCTCTAATCAGCAAAGCAAAACAACGC-------------------------------------------------------AACAGCAGCAGCAGCACCAGCAG-----CAG---CAGCAACACCAAAAG---CA------GC----------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCAGCAGGCCGCCAACATGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGTATCAGCAACGCCTGCCACCA---G------GTG------------------------------------------------------------------------------------------------------------------------------CACCATCGA------TT------------CACAGGTGAGT---------------------GTCCAACT-------CTTAA-------------TT-----------------CAAGTAATTT------A
droFic1 scf7180000453948:837206-837448 - TGGCA-----AG-----------TTGGGTCGGCGGAA--GCGGCGAGGT--CTCTCCTCCTCGTCGGG--------------------------------ATCG-------GAAACGGTGGCCAGT---------------TTGCTGCAGAAGCAGCAGCAACATCAA-----------CAGCAACAGCAACAG---CA---ACTGC----------------------------------------------------------------------------------------------------------------------AACAGCAGCAACATCAGCCCACTTTAACGGCT-----------------GACTTTGCGGGATCCAGTGTTCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCGCCCAT----------------------------------------------------------CTCGCCCATGCCA---AAT-ATCCAGG-A------GCCAC---------CGCAGCAG---------------C-----AACA-------------GCCGCAGCAGGCTC----CTC---------------------------------C
droEle1 scf7180000491044:1383231-1383472 - CGCAA-----CA--GCAACACCA----------------------------ATCC-----CCGCCAGC-A------GC----AGCAACACTGTG---------------------------------------------------------CCCAGCAGCAACAGTAG-----TTGCAACAACAACAGCAGCAA---CA---GCAAT----------------------------------------------------------------------------------------------------------------------AGCAACAGCAACA--------------------------------------------------------------------------GCAA------------------------------------------CAGCAACA------------------------------AT---------AACTGCAATAGCAG-------------CAGCAAAGCCAACAACCA-------------------------------A------GTGCCAATAC---------A-------------AGTGCCAATCCTGAGCGGATCCCCCGGCGGATCCTCCAGTCACATTCC------------------ACACA-------------T------------------------------------------------------------------------GCCC-------------TACTCCTAC-------CA-----------------CCACC---ACCATCAGC
droRho1 scf7180000779541:16468-16702 + AGCAA-----CA--ATA---------CATCT---CCA--GTGGT-----------------------------------------------------------------------------------------------------------------------------------GTTG------------------CACCACCCACGGCAGCGGCTCGCAAGTTTGTGGTTAGCACCAGCACGCGACACGTGAACGTGATTGCGGCCAATCA---------------------------------------------------------------------------------------------------------------------------------------TT-TCCAGCAGCAACATC-AGGC--------------GCAG---CAGCA---------------------------------------ACATCAGTCGCATCAGCAACATCAGCAGCATGTGATTGC-T-AGCGTTAGTT-------CTAG---TAGCAGCTCTAG--------------TGGCTCTTC--------------------------------------------------------------------------TTCTTCGC----------ACATATTTCGCACG---------------------------------------------------------------------------------------------------------------------------------------------CCCGT
droBia1 scf7180000301547:17285-17500 + CGAGC-----AT--GCACCATTT----------------------------AATA-----CAGCCCAC-C------ATG-GAGACAGCAC-------------------------------------------------------AACCGACGCAGCAGCAACAGCAA-----ACGGCACAGC------AG------CAACAACCAC----------------------------------------------------------------------------------------------------------------------AGCAGCAGCCATCGCAAGCGACTCTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TGCAACATCAGTCAC-CCAT--------------ACACCAG------CAGCAGCA------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCA---------------C-----CGCA-------------CCACCAGCAAC---ATTTACC-----------------CAGCT---ACAATCAGT
droTak1 scf7180000415211:46700-46910 - GCAGC-----A---------------ATT---------------------------------GGCCGC-C------GCG-GTGGCCGC---------------------------------------------------------AGCT-GCGCAGCACCAACAGCAG--------------------CAGCAGCAGCA------GC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAGCAGCAGGCCAAGCTGAT----------------------------------------------------------------------------GG------------------------------------------------------------------------------------------------------------ACATGAAGCCCAT-------------------------------GTTCCTGGGACCGGTGC---------T-------------CA-----AACCGGAGC---------------TTCTCCAGGCA-----------------------------------CCGCCCATGCAC---AGT-C-------CGGCGCAGCCGCAGCAGCAGCAACAGTCG---------------T-----CGCC-------------GCATCT---------------------------------------CTCGCTCAGC
droEug1 scf7180000409554:665540-665794 - TGCTGC-GGCAG--GTAGCTCC--------------T--TT---GCCGCCTC-------------GG----------------CCAGCA-----------------------------------------------------TGCTGGACATGCAGCAGCAACATCTC-----GAGGAGCAGC--------------------------------------------------------------------------------------AGCAACACCACCATCTGCACTACCAGCA--GCAGCAGCAGCAACAA----------------------------------------------------------CA-----------------------TTACCA----GC-AGCAGCAGCAACATC-TCCC--------------GCAG---CAGCAG---CAACAGCAGCAGCATCAGCTG----------------------------------------------------TACCATCACTATCATCCTGGCCACG---AGGCAGCGGTGGCCGCCAGTGC------TGG------------------------------------------------------------------------------CCTCCTGGATATATCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTAAAT
dm3 chr2L:239923-240127 - TAACA------T--GCACCATTT----------------------------AATT-----CAACCTAC-C------ATG-GAGACAACAC-------------------------------------------------------AGCCGACGCAGCAGCAACAGCAA-----ACGTCACAAC------AACAG---CA------GC----------------------------------------------------------------------------------------------------------------------AACCACAGCAACCGCAGGCGACTTTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TGCAGCACCAGTCTC-CAAT--------------ACAC---CAGCA---------------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCG---------------C-----CGCA-------------CCACCAGCAAC---ATCTACC-----------------CAGCT---ATAATCAG-
droSim2 2l:12008936-12009132 + GAAAA-----GTTTCCATCCCTA----------------------------TTTG-----CGGCCCAC-C------G---------------------------------GCAGTGGC---------------------------AAC------AACAGCAACAGCAA------CATCGCAGC------AT------TA---TCTAC-----------------------------------------------------------------------------------------A--ACAACGGCAGCAACAG------------------CGGC----------TAAAATGTCGA---------------CAACATTGTTTGAGACACTCTTGCACAACCAAATAAATTCCAGC-CCAATA---------------------GCACTGC------CAGCAGCA------------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATCG---------------C-----AGCA-------------ATATCTGCAG---------------------------------------------
droSec2 scaffold_14:237778-237975 - CTAAC-----AT--GCACCATTT----------------------------AATT-----CAACCTAC-C------ATG-GAGACAACAC-------------------------------------------------------AGCCGACGCAGCAGCAACAGCAA-----ACGTCACAAC----------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGCAACCGCAGGCGACTTTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TCCAGCATCAGTCTC-CAAT--------------ACAC---CAGCA---------------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCG---------------C-----CGCA-------------CCACCAGCAAC---ATCTACC-----------------CAGCT---ATAATCAGT
droYak3 2L:232922-233143 - CCAAC-----AT--GCACCATTT----------------------------AATC-----CAACCTAC-C------ATG-GAGCCAACAC-------------------------------------------------------AGCCGACGCAGCAGCAACAGCAA-----ACGACACAACAACAGCAGCAG---CA---ACCAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAACCGCAGGCGACTTTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TGCAGCATCAGTCCC-CCAT--------------ACACCAG------CAGCAACA------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCA---------------C-----CGCA-------------TCACCAGCCAC---ATCTACC-----------------TAGCT---ACAATCAGT
droEre2 scaffold_4690:16107642-16107838 + CATCA-----TC-----------A--CGCCG--------------------------------CCCAC-C------ATC-ATGC-CGCAC------------------------------------------ATCACCATCATGCTGC------AGCAGCAGCGGCGG--------------------CAGCAG---CA---GCGGC----------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAGCCCACCATCATGCCGCC--------------CA-----------------------CCATTTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTGCCA-------------------A---------T-------------GGCAT-GGTTCCACACCCCCTG------------------------------------------------------GCCGCCCATCCAC---AC------------------------------------ATGCAT---------------------GTCCCGGTGGCAATGCATCCT-------------------------------------------CAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGGCA-----AC-----------G--ATTCG------TCCTGGCACCGTTTTGTTAG---------------------------------TTCTTCATGCATCG---AAGGTAAGTGC---------------------------AACAACAGCAGCAATAACAACAG--------------------CAGCA-----------------------------------------------------------------------------------------------------------------CATGAGCAACAGCGACAATATCAACAACAATCGCACGCTGATTCAT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------------AC-----------------------ATTCGTCGCGCTGCTGC---------T-------------TATAA-AATTCCGCACAAATCG------------------------------------------------------CACGCCCATTCAC---AATGATTCATA-A------GT------------CACAGTCG---------------C-----AACG-------------TCATCGCCAGATTT----CTC-----------------CAAGTATCTTAATCAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................ACAACAG--------------------CAGCA-----------------------------------------------------------------------------------------------------------------CATGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................CCGTTTTGTTAG---------------------------------TTCTTCATGCATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000010000
droMoj3
TGGCA-----AC-----------A--CATCG------TCCTGGCAACGCTATGTAAA---------------------------------TTCTTCATGCATCG---AAGGTGAGTCC---------------------------AACAA---------------CAA-----------CAACAACAACAACAA---CA---ACAAC----------------------------------------------------------------------------------------------------------------------AACAGCAGCAACTTGATCTGATTC-AT-----------------------------------------------------------------------------GC------------------------------------------------------------------------------------------------------------ATATAAAT--------------------------------------TCGCTGTGCCGTTGT---------T-------------TATAAGAATTCCGCGCAAATCG------------------------------------------------------CACGCTCATTCAC---AATGATTCATC-A------GT------------CACAGTTGTCGTCGTCGTCGTCGC-----GACG-------------TCATCGTCAGATTT----CTC----------------CAAAGTAACTTAATCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................AACAA---CA---ACAAC----------------------------------------------------------------------------------------------------------------------AACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
TGTCT-----CG-----------G--ATTCG------ACCTGGCATCGTTTTGTCAC---------------------------------TTCTTCATGCATCG---AAGGTAAGTGCCACACGTGCCA--CACG----------AG-----------------------------------------CCACAC---A-----------------------------------------------------------------------TGCAACATACCC-CAC-----------ACTCCACTGAAAGCATCAG---C------AG-AAAAACACTCGCT----GATTCAT-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGT---------------TAGCA-----------------------G------TGC---------T-------------TATAA-AATTCCGCGCAAATCG------------------------------------------------------CTGG--------C---AGTGATTCATCCA------CT------------CACAGTCGGAGT--------TCGCGCAACAACG-------------TCTTAATCAGATTT----TGG----------------CCG------ACCAACCGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAGCA-----AC-----------A--GC---------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCACCACCACCACCAA-----CATCAT---CATCACCACCA------TC-----------------------------------------------------------------------------AGCAACAACAACA--A------CATGAGCCACAACAACAATTACAACAACAAACACAT-------------------------------------------------------------------T-ATGTTCCACAATTGTATTATCCAACGCACTGGATGCAG---CAACAG---CAACAGCAGCAGCAGCAGGTATCAAACAACGAGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--------------------------------------------------------------------------TACAACCA---------------C-----AACA-------------GCAGCAACCAATCC----CAGTTGCCCAAGTTTATAGCCT------ACC-AGAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGGTA...............................................................................................................................................................................................................................................................................................................................................................................2121.00200020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG---CAACAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
.....................................................................................................................................................GCAGCAGCAGCACCACCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
CAGCA-----AC-----------A--GC---------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.................................................................................................................................................AGCAGCAGCAGCAGCACCACCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................AACAACAATTACAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
....A-----AC-----------A--GC---------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
dp5
TGGCA-----GT-----------G--GCAGC--ACCA--GTGGCGTGAA-----------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------GCCTGGGCCCTGCAGCAGCA-GCAAC---------AGACGGCAGCGTTGCACCACCACCAGCAGCAACAGCAGCA--A------------------------------CAGCAACAGCA------------------G-------------CA-----------------------ACATTTACA-AC-AGCAGCAGCAGGCGC-ATGC--------------AC----------------------------------------------------------------------------------------------ACCAGCAACAT-------------------------------G------CTGCCGCTGTGGCTGCCGCGCAGATCCAGCAGC------------------------------------------------AACAACAC----------ACACATCACGCTCA-------ACAGCA-----------TGCCGCTGCC-C---------AGCAGCAG---------------C-----AGCA-------------CCACCATCCCC---ATG-------------------------------GACCGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................C--ACCA--GTGGCGTGAA-----------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------GCCTGGGCCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
............................................GTGAA-----------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------GCCTGGGCCCTGCAGCAGCA-GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
..........................................................................................................................................................................................................................................CAGCAGCA-GCAAC---------AGACGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGCTGTGGCTGCCGC................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCA-------ACAGCA-----------TGCCGCTGC.................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................AGCAGCA-GCAAC---------AGACGGCAGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............................................GAA-----------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------GCCTGGGCCCTGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................AGCAGCA-GCAAC---------AGACGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGTGGCTGCCGCGCA.............................................................................................................................................................................................................................................2011.0010100000000
............................AGC--ACCA--GTGGCGTGAA-----------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------GCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................GAA-----------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------GCCTGGGCCCTGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................CCACCAGCAGCAACAGCAGCA--A------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................TACA-AC-AGCAGCAGCAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310100000000
........................................................................................................................................................................................................................................................................................................A--A------------------------------CAGCAACAGCA------------------G-------------CA-----------------------ACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
............................................................................................................................................................................................................................................................................................AGCAACAGCAGCA--A------------------------------CAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
..................................................................................................................................................................................................................................................................................................AGCAGCA--A------------------------------CAGCAACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010000000
.......................................................................................................................................................................................................................................................................................................CA--A------------------------------CAGCAACAGCA------------------G-------------CA-----------------------AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
CGCCC-----AC-----------A--CCACC--TA--CGCCGCCGCCACCTCTCTAC---------------------------------TCCCATACGCCCTCGCTGTGGCAGACGCCGCTCATTCTGGACATCAGCC------AGAAGCAGCAGCAGCCGCAGCAC-----CCGTACCAGC------AG------CA---GCAGA----------------------------------------------------------------------------------------------------------------------ACCATCATCAGCTCCAGGCTGTGTCCATTTCATTGGCCAGTCCGCCTACA-----------------------TCGCCCGCC-TC-GTTACCCTCGCCCAC-TCTG--------------ACACCCA------CAGCAGCT------------------------------GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCGCCA---------------T-----GGTG-------------TCACCGATTGT---CTCG-------------------------------CCCAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAC-TCTG--------------ACACCCA------C......................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
..............................................................................................................................................................................................................................................................................................................................................AGCTCCAGGCTGTGTCCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAC-TCTG--------------ACACCCA------C......................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT------------------------------GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCGCCA---------------T-----GGT.....................................................................1811.001010000
......................................................................................................................................................................................................A---GCAGA----------------------------------------------------------------------------------------------------------------------ACCATCATCAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................................................................................................................................................................................CAGC------AG------CA---GCAGA----------------------------------------------------------------------------------------------------------------------ACCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331000010
droAna3
TGCCACCGACAT--GCAACGCTA----------------------------TGTG-----CAACG---------------CATGCAACA--------------------------------------------CC----------AGCAG---------------CAG-----------CAGCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGAATCGCACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATGAGTGGCATTGCCACG---CAGCAGCACTTGCCACAA---------------------------------------------------------------------------------------------------ATGGATGCAC------------AGTACACG---AGCA-----------TGC------------------CGCGGCCG---------------C-----TGCA-------------CCATCAGCAG-------------------------------------------ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCACG---CAGCAGCACTT....................................................................................................................................................................................................................................................................................1911.001000001
......................................................................................................................................................................AG-----------CAGCAACAGCAGCAG---CA---GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153030000
.......................................................................................................................................................................................AACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
................................................................................................................................................................................................AG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102101000
....................................................................................................................................................................................AGCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
...................................................................................................................................................................................CAGCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000101
.....................................................................................................................................................G---------------CAG-----------CAGCAACAGCAGCAG---CA---GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
..........................................................................................................................................................................................AGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
.....................................................................................................................................................................................GCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000002
.....................................................................................................................................................................................GCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
......................................................................................................................................................................................CAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
.......................................................................................................................................................................................AACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
........................................................................................................................................................................................ACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
....................................................................................................................................................................................AGCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
............................................................................................................................................................................................CAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.....................................................................................................................................CC----------AGCAG---------------CAG-----------CAGCAACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
...................................................................................GCAACA--------------------------------------------CC----------AGCAG---------------CAG-----------CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
.......................................................................................................................................................................................AACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
....................................................................................CAACA--------------------------------------------CC----------AGCAG---------------CAG-----------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
....................................................................................................................................................................................AGCAACAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000
.......................................................................................................................................................................G-----------CAGCAACAGCAGCAG---CA---GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................AG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..................................................................................................................................................GCAG---------------CAG-----------CAGCAACAGCAGCAG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.................................................................................................................................................AGCAG---------------CAG-----------CAGCAACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
..........................................................................................................................................................................................AGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
..........................................................................................................................................................................................AGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.........................................................................................................................................................................................CAGCAGCAG---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.................................................................................................................................................................................................G---CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.....................................................................................................................................................................................................CA---GCAAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
droBip1
GCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------AGCATCAACATCAG-----CAGCATCAAC---------------------AAC-----------------------------------------------------------------------------------------A--GCAGCAACATCAACAA------------------------------------------------------------------------------------CATCGGGA-AT-GTTTTCAACAATTTC-TTAT--------------GCAA---CCGAAG---CAACAGCAGC---------------------------------------------------------CA--------------------------------------------------------------ACTGC---------TGCTGAAAATTTGCAAC------------------------------------------------GATTGCAC----------ACT------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
TGGAC-----CA--ACG---------TCCCA---TCA--TTTGCATCAA-TCATCAG------TCTCTAATCAGCAAAGCAAAACAACGC-------------------------------------------------------AACAGCAGCAGCAGCACCAGCAG-----CAG---CAGCAACACCAAAAG---CA------GC----------------------------------------------------------------------------------------------------------------------AACAGCAGCAGCAGCAGGCCGCCAACATGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGTATCAGCAACGCCTGCCACCA---G------GTG------------------------------------------------------------------------------------------------------------------------------CACCATCGA------TT------------CACAGGTGAGT---------------------GTCCAACT-------CTTAA-------------TT-----------------CAAGTAATTT------ASizeHit CountTotal NormTotal
No Reads
droFic1
TGGCA-----AG-----------TTGGGTCGGCGGAA--GCGGCGAGGT--CTCTCCTCCTCGTCGGG--------------------------------ATCG-------GAAACGGTGGCCAGT---------------TTGCTGCAGAAGCAGCAGCAACATCAA-----------CAGCAACAGCAACAG---CA---ACTGC----------------------------------------------------------------------------------------------------------------------AACAGCAGCAACATCAGCCCACTTTAACGGCT-----------------GACTTTGCGGGATCCAGTGTTCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCGCCCAT----------------------------------------------------------CTCGCCCATGCCA---AAT-ATCCAGG-A------GCCAC---------CGCAGCAG---------------C-----AACA-------------GCCGCAGCAGGCTC----CTC---------------------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
CGCAA-----CA--GCAACACCA----------------------------ATCC-----CCGCCAGC-A------GC----AGCAACACTGTG---------------------------------------------------------CCCAGCAGCAACAGTAG-----TTGCAACAACAACAGCAGCAA---CA---GCAAT----------------------------------------------------------------------------------------------------------------------AGCAACAGCAACA--------------------------------------------------------------------------GCAA------------------------------------------CAGCAACA------------------------------AT---------AACTGCAATAGCAG-------------CAGCAAAGCCAACAACCA-------------------------------A------GTGCCAATAC---------A-------------AGTGCCAATCCTGAGCGGATCCCCCGGCGGATCCTCCAGTCACATTCC------------------ACACA-------------T------------------------------------------------------------------------GCCC-------------TACTCCTAC-------CA-----------------CCACC---ACCATCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
AGCAA-----CA--ATA---------CATCT---CCA--GTGGT-----------------------------------------------------------------------------------------------------------------------------------GTTG------------------CACCACCCACGGCAGCGGCTCGCAAGTTTGTGGTTAGCACCAGCACGCGACACGTGAACGTGATTGCGGCCAATCA---------------------------------------------------------------------------------------------------------------------------------------TT-TCCAGCAGCAACATC-AGGC--------------GCAG---CAGCA---------------------------------------ACATCAGTCGCATCAGCAACATCAGCAGCATGTGATTGC-T-AGCGTTAGTT-------CTAG---TAGCAGCTCTAG--------------TGGCTCTTC--------------------------------------------------------------------------TTCTTCGC----------ACATATTTCGCACG---------------------------------------------------------------------------------------------------------------------------------------------CCCGTSizeHit CountTotal NormTotal
No Reads
droBia1
CGAGC-----AT--GCACCATTT----------------------------AATA-----CAGCCCAC-C------ATG-GAGACAGCAC-------------------------------------------------------AACCGACGCAGCAGCAACAGCAA-----ACGGCACAGC------AG------CAACAACCAC----------------------------------------------------------------------------------------------------------------------AGCAGCAGCCATCGCAAGCGACTCTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TGCAACATCAGTCAC-CCAT--------------ACACCAG------CAGCAGCA------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCA---------------C-----CGCA-------------CCACCAGCAAC---ATTTACC-----------------CAGCT---ACAATCAGTSizeHit CountTotal NormTotal
No Reads
droTak1
GCAGC-----A---------------ATT---------------------------------GGCCGC-C------GCG-GTGGCCGC---------------------------------------------------------AGCT-GCGCAGCACCAACAGCAG--------------------CAGCAGCAGCA------GC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAGCAGCAGGCCAAGCTGAT----------------------------------------------------------------------------GG------------------------------------------------------------------------------------------------------------ACATGAAGCCCAT-------------------------------GTTCCTGGGACCGGTGC---------T-------------CA-----AACCGGAGC---------------TTCTCCAGGCA-----------------------------------CCGCCCATGCAC---AGT-C-------CGGCGCAGCCGCAGCAGCAGCAACAGTCG---------------T-----CGCC-------------GCATCT---------------------------------------CTCGCTCAGCSizeHit CountTotal NormTotal
No Reads
droEug1
TGCTGC-GGCAG--GTAGCTCC--------------T--TT---GCCGCCTC-------------GG----------------CCAGCA-----------------------------------------------------TGCTGGACATGCAGCAGCAACATCTC-----GAGGAGCAGC--------------------------------------------------------------------------------------AGCAACACCACCATCTGCACTACCAGCA--GCAGCAGCAGCAACAA----------------------------------------------------------CA-----------------------TTACCA----GC-AGCAGCAGCAACATC-TCCC--------------GCAG---CAGCAG---CAACAGCAGCAGCATCAGCTG----------------------------------------------------TACCATCACTATCATCCTGGCCACG---AGGCAGCGGTGGCCGCCAGTGC------TGG------------------------------------------------------------------------------CCTCCTGGATATATCCAC-------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTAAATSizeHit CountTotal NormTotal
No Reads
dm3
TAACA------T--GCACCATTT----------------------------AATT-----CAACCTAC-C------ATG-GAGACAACAC-------------------------------------------------------AGCCGACGCAGCAGCAACAGCAA-----ACGTCACAAC------AACAG---CA------GC----------------------------------------------------------------------------------------------------------------------AACCACAGCAACCGCAGGCGACTTTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TGCAGCACCAGTCTC-CAAT--------------ACAC---CAGCA---------------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCG---------------C-----CGCA-------------CCACCAGCAAC---ATCTACC-----------------CAGCT---ATAATCAG-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---ATCTACC-----------------CAGCT---ATAATCAG-24111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020103140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CGACGCAGCAGCAACAGCAA-----AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCG---------------C-----CGCA-------------CCACCAGCA..............................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................ACAC-------------------------------------------------------AGCCGACGCAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AATT-----CAACCTAC-C------ATG-GAGACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................CAACAC-------------------------------------------------------AGCCGACGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---ATCTACC-----------------CAGCT---ATAATCA..2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ACAGCAACCGCAGGCGACTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................C-C------ATG-GAGACAACAC-------------------------------------------------------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CAGCAACAGCAA-----ACGTCACAAC------AACAG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC---CAGCA---------------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCG---------------C-----C.......................................................................2112.0020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................CAG---CA------GC----------------------------------------------------------------------------------------------------------------------AACCACAGCAACCGCAGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAAC---ATCTACC-----------------CAGCT---AT.......2412.0020000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
GAAAA-----GTTTCCATCCCTA----------------------------TTTG-----CGGCCCAC-C------G---------------------------------GCAGTGGC---------------------------AAC------AACAGCAACAGCAA------CATCGCAGC------AT------TA---TCTAC-----------------------------------------------------------------------------------------A--ACAACGGCAGCAACAG------------------CGGC----------TAAAATGTCGA---------------CAACATTGTTTGAGACACTCTTGCACAACCAAATAAATTCCAGC-CCAATA---------------------GCACTGC------CAGCAGCA------------------------------AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATCG---------------C-----AGCA-------------ATATCTGCAG---------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................AAAATGTCGA---------------CAACATTGTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.............................................................................................................................................................................................................AC-----------------------------------------------------------------------------------------A--ACAACGGCAGCAACAG------------------CGGC----------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
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.............................................................................................................................................................................................................AC-----------------------------------------------------------------------------------------A--ACAACGGCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.08100000000001000000
.............................................................................................................................................................................................................AC-----------------------------------------------------------------------------------------A--ACAACGGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000010000000000
droSec2
CTAAC-----AT--GCACCATTT----------------------------AATT-----CAACCTAC-C------ATG-GAGACAACAC-------------------------------------------------------AGCCGACGCAGCAGCAACAGCAA-----ACGTCACAAC----------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGCAACCGCAGGCGACTTTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TCCAGCATCAGTCTC-CAAT--------------ACAC---CAGCA---------------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCG---------------C-----CGCA-------------CCACCAGCAAC---ATCTACC-----------------CAGCT---ATAATCAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................AGCAA-----ACGTCACAAC----------------------------------------------------------------------------------------------------------------------------------------------AACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.................................................................................................................................................................................CACAAC----------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGCAACCGCAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..............................................................................................................................................................................CGTCACAAC----------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
CCAAC-----AT--GCACCATTT----------------------------AATC-----CAACCTAC-C------ATG-GAGCCAACAC-------------------------------------------------------AGCCGACGCAGCAGCAACAGCAA-----ACGACACAACAACAGCAGCAG---CA---ACCAC----------------------------------------------------------------------------------------------------------------------AGCAACAGCAACCGCAGGCGACTTTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-TGCAGCATCAGTCCC-CCAT--------------ACACCAG------CAGCAACA------------------------------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCA---------------C-----CGCA-------------TCACCAGCCAC---ATCTACC-----------------TAGCT---ACAATCAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................CTTTAACATCGCCG-------------CA-----------------------CCACCAGCA-AA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................A-TGCAGCATCAGTCCC-CCAT--------------....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA---------------C-----CGCA-------------TCACCAGCCAC---.........................................1911.00100100000000
droEre2
CATCA-----TC-----------A--CGCCG--------------------------------CCCAC-C------ATC-ATGC-CGCAC------------------------------------------ATCACCATCATGCTGC------AGCAGCAGCGGCGG--------------------CAGCAG---CA---GCGGC----------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAGCCCACCATCATGCCGCC--------------CA-----------------------CCATTTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTGCCA-------------------A---------T-------------GGCAT-GGTTCCACACCCCCTG------------------------------------------------------GCCGCCCATCCAC---AC------------------------------------ATGCAT---------------------GTCCCGGTGGCAATGCATCCT-------------------------------------------CAAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-GGTTCCACACCCCCTG------------------------------------------------------GC....................................................................................................................................................2011.0011000000
..............................................................................C-ATGC-CGCAC------------------------------------------ATCACCATCATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
................................................................................................................................................CTGC------AGCAGCAGCGGCGG--------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310100000
......................................................................................................................................................................................................A---GCGGC----------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000010
..............................................................................................................................................................................................GCAG---CA---GCGGC----------------------------------------------------------------------------------------------------------------------AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000

Generated: 05/16/2015 at 09:18 PM