ID:

dvi_12779

 Coordinate:

scaffold_12970:1160907-1161003 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_3989:1]; CDS [Dvir\GJ19103-cds]; intron [Dvir\GJ19103-in]; exon [dvir_GLEANR_3989:2]; CDS [Dvir\GJ19103-cds]; intron [Dvir\GJ19103-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

-----------------------------------------------###-------------------------------------------------------------------------------------------------########################################----------
AGTATTTCCAAGTATTCGTTAGCTGATTCAATTACCGCTGCATCAAAATGGTAAGCGCACACACAACACACAAACATACGTGCACACACTCACACGCTTCTACGTCGGCTATTTTGCTTATCTCATTTACGTTTACTTTAATCCTAGGTACTCATTGCCGCGGCAGTCTGCACAAAAAATGGCAAAGGTAAGTGAAA
**************************************************(((((((...........(((........)))...........(((......))).(((......)))...........)))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060664
9_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
.................................................................................................................................................................GGCAGTCTGCACAAAAAATGGC.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
........................GATTCAATTACCGCTGCATC......................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0
........................GATTCAATTACCGCTGCAT.......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................GTCTGCACAAAAAATGGCAAAGTC........ 24 2 1 1.00 1 1 0 0 0 0 0 0 0
........................GATTCAATTACCGCTGCATCAA....................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................ATGGTACTCATTGCCGCGGC................................. 20 2 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................GTACTCATTGCCGCGGCAGTCTGCA......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.....TTCCTAGTATTCGTTAGCT............................................................................................................................................................................. 19 1 2 0.50 1 0 0 0 0 0 0 1 0
.ATATCTCCAAGTACTCGTT................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCATAAAGGTTCATAAGCAATCGACTAAGTTAATGGCGACGTAGTTTTACCATTCGCGTGTGTGTTGTGTGTTTGTATGCACGTGTGTGAGTGTGCGAAGATGCAGCCGATAAAACGAATAGAGTAAATGCAAATGAAATTAGGATCCATGAGTAACGGCGCCGTCAGACGTGTTTTTTACCGTTTCCATTCACTTT
**************************************************(((((((...........(((........)))...........(((......))).(((......)))...........)))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060669
160x9_females_carcasses_total
 V116
male body		 SRR060685
9xArg_0-2h_embryos_total
...TAAAGGGTCATAAGGAATCGA............................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
......AGGGTCATAAGGAATCGA............................................................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0 0
.............................................................ATGTTGTGAGTTGGTATGCACG.................................................................................................................. 22 3 2 0.50 1 0 0 1 0 0 0
...............AGCAATAGACTAAATTAAT................................................................................................................................................................... 19 2 9 0.11 1 0 0 0 1 0 0
......AGGGTCATAAGGAATCGAA............................................................................................................................................................................ 19 3 18 0.06 1 0 0 0 0 1 0
......AGGTTCATAAGGAGTCGTC............................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1160857-1161053 + dvi_12779 A--------------------------------GTATTTCC-AAGTATTCGTTA--GC-T--GATTC---------------A-ATTACCGCTGCA---TCAAAATGGTAAGCGC---A----------C----------------------ACACAACACACAAACA----T----AC----------GT--GCACACACTCACACGCTTCTACGTCGGCTATTT-T---GCTTATCT-------------------------------------------CATT---------------------------------TAC-G-------TTT--ACT-TTAATCCTAGGTACTCATTGCCGCGGCAGTCTGCACAAAAAATGGCAAAGGTAAGT-GAAA---------
droMoj3 scaffold_6308:1235767-1235969 - G--------------------------------GTATTTTC-AGGTATTCGTTA--GC-T--GATTC---------------A-ATTACCGCTGCA---TCAAAATGGTAAGCCC---G----------CACAGA----CA---CGC---ACACA---------CACACACAC--ATACA--------CAC------AAACGTACATACGTCTACGTCGGCTGTTT-T---GCTTATCT-------------------------------------------CATT---------------------------------TGT-G-------TTT--GA--TTAATCCCAGGTACTCATTGCTGCAGCAGTCTGCACAAAGAATGGCAAAGGTAAGT-CAAT---------
droGri2 scaffold_15081:1760743-1760955 + A--------------------------------AAATTTGC-AAGTATTCACTAGTCA-A--CAAAC--------------CA-ACAAACGCTGCA---ATAAAATGGTAAGCTC-----------------------------------ACAC---------------------ACACA--------CACA------ATTGCGTACGCGTCAATGTCGGCTATTC----GACTTAT-------------TTT-------TCA-----CATACCTTTATATTCACTTG----------------------------TGC--T-T-------CTT--ATC---ACCTGCAGGTACTCATTGCCGCATCAGTCTGCACAAAGAATGGCAAAGGTAAGC-AAAGCTCTGCATA
droWil2 scf2_1100000004515:3124726-3124847 + ----------------------------------------------------------------------------------------------CA---GCAAAATGGTAAGCGA-----------------------------------ACGCA-------------------C--AAA--------CACTTT----------------AAAAGACGGACAATTT-TTGAT-------------------------------TTCGAT--------------------------------------------------------------------CA-CAAATTACAGGTACTCATTGCTGCGACGGTTTGCACAAAAAATGGCAAAGGTAAGT-TGAA---------
dp5 XL_group1e:3767812-3768001 - G--------------------------------GTTCTTCT-GT-------------T-C--T--AT---------------T-TCAACTGCTGCGCTACAAAAATGGTAAGCGGAAAC---------CGCGGTA----TA---CGT---AC-------------------------ACA------CACAC--GCCCCGACT--AATACGTATACGTCGGCGATTT-TCGCT-------------------------------GCCAATCTTCCCGTATTC---------------------------------------------------------CCCACACCACAGGTACTCATTGCTGCGGCAGTCTGCACAAAGAATGGCAAAGGTAAGT-GGTG---------
droPer2 scaffold_17:701294-701503 - A--------------------------------CTTTTGCT-AG-----------GCACT-TAAAAGGTTCTTCTGTTCTATT-TCAACTGCTGCGCTACAAAAATGGTAAGCGAAACC---------CGCGGTA----TA---CGT---AC-------------------------ACA------CACAC--GCCCCGAC---TAAACGTATACGTCGGCGATTT-TCGCT-------------------------------GCCAATCTTCCCGTATTC---------------------------------------------------------CCCACACCACAGGTACTCATTGCTGCGGCAGTCTGCACAAAGAATGGCAAAGGTAAGT-GGTG---------
droAna3 scaffold_13117:1056044-1056238 - A--------------------------------GTATTTCC-TA----------GGGA-A--GAAAC--------------CAACGAATCGCTGCT----CAAAATGGTAAGTAC---ACGG--------CGA-----------CTC---AC-------------------------ACA--------CACATG----------------C-AACGTCGGCGATTT--GTGGCTTATCC----------------------------------CGAAA------------------------AACAAACTCACTCTTCC--C-ACCTATCGCCC--GTG-CGAATAACAGGTACTCATCGCCGCGGCAGTCTGCACCAAGAATGGCAAAGGTGAGT-GGCA---------
droBip1 scf7180000396425:1059057-1059250 + A--------------------------------GTATTTCC-TA----------GGGA-A--GAAAC--------------CAACGAATCGCTGCT----CAAAATGGTAAGTAC---ACGG--------CGA-----------CTC---AC-------------------------ACA--------CACATG----------------C-AACGTCGGCGATTT--GAGGCTTATCC----C------------------------------AAAA------------------------AACAAACTCACTCTTCC--C-ACCTATCGCCC--GTG-CAAATAACAGGTACTCATCGCCGCGGCAGTCTGCACCAAGAATGGCAAAGGTGAGT-AGC----------
droKik1 scf7180000302469:1171540-1171758 - A--------------------------------GTATTTCT-GT----------GGAC-C--CA------------------------AAGCTGCT---TCAAAATGGTAAGAAA---GCGGTAGACTTGCGGCAG---------GC---ACACACCACG-AC----AAGCAC--ATAACACGACACGCACA------------------CACACGTCGGCGCTTA-T---------CG----G------AAA-------TTG-----CAA------AATATTAATAAAA--GAAATCG-----TAACCCC--------------------TCC--CTC-CCCCTGACAGGTACTCATCGCTGCGGCAGTCTGCACCAAGAATGGCAAAGGTGAGT-GGAG---------
droFic1 scf7180000454072:2867518-2867706 - A--------------------------------GTATTCCC-CA----------GGAC-T--TGAAT---------------A-TCAAACGCAGCC---GCAAAATGGTAAGAGC---C---------TCCGACC----GA---CTC---AC-------------------------GCA------CACACG------------------CACACGTCGGCGATTT-CGAAGCTAATCG----GC-----------------A-----TATTCCGGAATTATCATTAAA------------------------------------------CTT--AAT-CGATTCGCAGGTACTCATTGCTGCTGCAGTCTGCACGAAGAATGGCAAAGGTGAGT-G------------
droEle1 scf7180000491001:1258165-1258379 - A--------------------------------GTATTTCC-CA----------GGAG-CTAAAAAC---------------G-TTAAAAGCAGCT---GCAAAATGGTAAGAGT---C--------CACCGGCCAGCAT----------ACAC--C-----CAAACA----CACACGCA--------CACA------------------AACACGTCGGCGATTT-TGAGGCTAATCG----G-----G------------G-----TATTCCGGAATTATCATTATT----------------------------------TGTTATTAATT--ATT-CGACTTGCAGGTACTTATTGCTGCGGCAGTCTGCACGAAGAATGGCAAAGGTGAGT-AAAA---------
droRho1 scf7180000779506:1345507-1345699 + A--------------------------------GTATTTTC-C------------GAC-C--TAAAC---------------G-TCAAACGCAGCT---GCAAAATGGTAAGAGC---C--------TCCCGGCCAACAT----------ACAC-------------A----CAC--ACA------CACACA------------------TACACGTCGGCGATTT-TGTGGCTAATCG----G------------------G-----TATTCCGGAATTATCATTATT------------------------------------------ATT--CTT-CGACTTGTAGGTACTTATTGCTGCGGCAGTCTGCACGAAGAATGGCAAAGGTAAGT-G------------
droBia1 scf7180000301760:4358964-4359196 - A--------------------------------GTATTTCCCCA----------GGGC-T--AAAAC---------------G-TCAAGCGCAGCA---GCAAAATGGTAAGAGC---C----------CCGACC----TGACCCGCAACAC-------------------------GCA------CACACA------------------TACACGTCGGCGATTT-TGGGGCTTATCTATCGGCTGGGGAGA-------CTG-----TGTTCCGGAATTGTCATTAAA-------------------CCTACTTTTCC--CTATCCAT-ATCCGTATC-CGACTTGCAGGTACTCATTGCTGCGGCAGTATGCACGAAGAACGGCAAAGGTGAGTTGG-----------
droTak1 scf7180000415704:1360749-1361022 - ACCATCCTGCGCCGTCCGCATCCGATCCGCCAAGTATTTACCCA----------GGGC-C--CAAAC---------------G-TCGAGAGCAGCT---GCAAAATGGTAAGAGC---TGGG----CCCCCGACC----TG---CAC---AC-------------------------GCA------CACAGA------------------TACACGTCGGCGATTTGTGGGGCTTATCG----GATGAGGGTATTCCGAT---TCCG--ATTCCGG-GTTATTATTATGGGGGTATTCGAGAATTAACCCCTGTT----TGT-G-------TAT--GCT-CGACTTGCAGGTACTCATTGCTGCGGCTGTTTGCACGAAGAACGGCAAAGGTGAGT-G------------
droEug1 scf7180000409182:305014-305204 - A--------------------------------GTATTTGCCCG----------GGAC-A--AAAAC---------------G-TGAAACGCAGCT---GCAAAATGGTAAGAGC---C----------CCGACC----TA---C--------------------------------ACA------TACACA------------------TACACGTCGGCGAATT-TGGGGCTTATCG----G-----GGTA-------TTG-----TATTCCGGAATTATCGTTTAA------------------------------------------TCT--ATC-CGACTTGCAGGTCCTCATTGCTGCGGCAGTCTGCACGAAGAATGGCAAAGGTGAGT-GA-----------
dm3 chrX:1755471-1755669 - A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TCAAACGCAGCA---GCAAAATGGTAAGAGC---C----------CCGACC----TA---CGC---AC-------------------------GCA------CACACC------------------TACACGTCGGCGATTT-TGGGTCTCATCG----GCGGGGGTTA-------TTG-----CATTCCGGTATTATCACTAAA------------------------------------------CCT--ATC-CGACTTGCAGGTATTAATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTAAGT-GG-----------
droSim2 x:1612765-1612963 - dsi_10997 A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TGAAACGCAGCA---GCAAAATGGTAAGAGC---T----------CCGAGC----TA---CGC---AC-------------------------GCA------CACACC------------------TACACGTCGCCGATTT-TGAGTCTCATCG----GCGGGGGTTA-------TTG-----CATTCCGGTATTATCACTAAA------------------------------------------CCT--ATC-CGACTTGCAGGTACTCATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTGAGT-GG-----------
droSec2 scaffold_10:1555966-1556164 - A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TGAAACGCAGCA---GCAAAATGGTAAGAGC---T----------CCGAGC----TA---CGC---AC-------------------------GCA------CACACC------------------TACACGTCGCCGATTT-TGAGTCTCATCG----GCGGGGGTTA-------TTG-----CATTCCGGTATTATTACTAAA------------------------------------------CCT--ATC-CGACTTGTAGGTACTCATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTGAGT-GG-----------
droYak3 X:1600459-1600684 - A--------------------------------GTATTTTC-CA----------GGGC-T--AAAAC---------------G-TGAAACACAGCA---GCAAAATGGTGAGAGC---C---------CCCGACC----TA---CGC---ACACA---------AACACACAC--ACACA--------CAC------AGGCACACACACCTACACGTCGGCGATTT-TTGGGCTTATCG--GGGCGGGGGTTA-------TTG-----TATTTCGGTATTATCACTAAA------------------------------------------CCT--ATC-CGACTTGCAGGTACTCATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTGAGT-GG-----------
droEre2 scaffold_4644:1734706-1734920 - A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TGAAACGCAGCA---GCAAAATGGTAAGAGC---C---------CCCGACC----TA---CGC---ACAC-------------A----C----GC----------AC--ACACAGGCATACACACCTACACGTCGGCGATTT-TGGGGCTTAG-G----GCGAGGGTTA-------TTG-----TATTCCGGTATTATCACTAAA------------------------------------------CGT--ATC-CGACTTGCAGGTACTCATTGCTGCGGCTGTATGCACGAAGAATGGCAAAGGTAAGT-GG-----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
A--------------------------------GTATTTCC-AAGTATTCGTTA--GC-T--GATTC---------------A-ATTACCGCTGCA---TCAAAATGGTAAGCGC---A----------C----------------------ACACAACACACAAACA----T----AC----------GT--GCACACACTCACACGCTTCTACGTCGGCTATTT-T---GCTTATCT-------------------------------------------CATT---------------------------------TAC-G-------TTT--ACT-TTAATCCTAGGTACTCATTGCCGCGGCAGTCTGCACAAAAAATGGCAAAGGTAAGT-GAAA---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................GGCAGTCTGCACAAAAAATGGC........................2211.001000100000000000000000000000000000000000000000000000000000000000
..............................................................GATTC---------------A-ATTACCGCTGCA---TC.....................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..............................................................GATTC---------------A-ATTACCGCTGCA---T......................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GTCTGCACAAAAAATGGCAAAGTC..................2411.001000100000000000000000000000000000000000000000000000000000000000
..............................................................GATTC---------------A-ATTACCGCTGCA---TCAA...................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GTACTCATTGCCGCGGCAGTCTGCA...................................2511.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
G--------------------------------GTATTTTC-AGGTATTCGTTA--GC-T--GATTC---------------A-ATTACCGCTGCA---TCAAAATGGTAAGCCC---G----------CACAGA----CA---CGC---ACACA---------CACACACAC--ATACA--------CAC------AAACGTACATACGTCTACGTCGGCTGTTT-T---GCTTATCT-------------------------------------------CATT---------------------------------TGT-G-------TTT--GA--TTAATCCCAGGTACTCATTGCTGCAGCAGTCTGCACAAAGAATGGCAAAGGTAAGT-CAAT---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................ATTTTC-AGGTATTCGTTA--GC-...............................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................................................................CT-------------------------------------------CATT---------------------------------TGT-G-------TTT--GA--TTAATCC...............................................................2211.001000010
.........................................................C-T--GATTC---------------A-ATTACCGCTGC...........................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
A--------------------------------AAATTTGC-AAGTATTCACTAGTCA-A--CAAAC--------------CA-ACAAACGCTGCA---ATAAAATGGTAAGCTC-----------------------------------ACAC---------------------ACACA--------CACA------ATTGCGTACGCGTCAATGTCGGCTATTC----GACTTAT-------------TTT-------TCA-----CATACCTTTATATTCACTTG----------------------------TGC--T-T-------CTT--ATC---ACCTGCAGGTACTCATTGCCGCATCAGTCTGCACAAAGAATGGCAAAGGTAAGC-AAAGCTCTGCATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
----------------------------------------------------------------------------------------------CA---GCAAAATGGTAAGCGA-----------------------------------ACGCA-------------------C--AAA--------CACTTT----------------AAAAGACGGACAATTT-TTGAT-------------------------------TTCGAT--------------------------------------------------------------------CA-CAAATTACAGGTACTCATTGCTGCGACGGTTTGCACAAAAAATGGCAAAGGTAAGT-TGAA---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................T-------------------------------TTCGAT--------------------------------------------------------------------CA-CAAATTACAG............................................................1911.00110000
.............................................................................................................................................................................................................................................................................................................................................................GGTACTCATTGCTGCGACG..........................................1911.00100010
.............................................................................................................................................................................................................................................................................................................................................................GGTACTCATTGCTGCGAC...........................................1811.00100010
dp5
G--------------------------------GTTCTTCT-GT-------------T-C--T--AT---------------T-TCAACTGCTGCGCTACAAAAATGGTAAGCGGAAAC---------CGCGGTA----TA---CGT---AC-------------------------ACA------CACAC--GCCCCGACT--AATACGTATACGTCGGCGATTT-TCGCT-------------------------------GCCAATCTTCCCGTATTC---------------------------------------------------------CCCACACCACAGGTACTCATTGCTGCGGCAGTCTGCACAAAGAATGGCAAAGGTAAGT-GGTG---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A--------------------------------CTTTTGCT-AG-----------GCACT-TAAAAGGTTCTTCTGTTCTATT-TCAACTGCTGCGCTACAAAAATGGTAAGCGAAACC---------CGCGGTA----TA---CGT---AC-------------------------ACA------CACAC--GCCCCGAC---TAAACGTATACGTCGGCGATTT-TCGCT-------------------------------GCCAATCTTCCCGTATTC---------------------------------------------------------CCCACACCACAGGTACTCATTGCTGCGGCAGTCTGCACAAAGAATGGCAAAGGTAAGT-GGTG---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................CTTCTGTTCTATT-TCAACTGC..............................................................................................................................................................................................................................................................................................................................2112.002200000
..........................................................................................GCTGCGCTACAAAAATGGTACT..........................................................................................................................................................................................................................................................................................................2211.001010000
.................................CTTTTGCT-AG-----------GCACT-TAAAA........................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................AGTCTGCACAAAGAATGG.........................1811.001001000
.....................................................................TCTTCTGTTCTATT-TCAACTGCTG............................................................................................................................................................................................................................................................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................GGTACTCATTGCTGCGGC...........................................1811.001001000
droAna3
A--------------------------------GTATTTCC-TA----------GGGA-A--GAAAC--------------CAACGAATCGCTGCT----CAAAATGGTAAGTAC---ACGG--------CGA-----------CTC---AC-------------------------ACA--------CACATG----------------C-AACGTCGGCGATTT--GTGGCTTATCC----------------------------------CGAAA------------------------AACAAACTCACTCTTCC--C-ACCTATCGCCC--GTG-CGAATAACAGGTACTCATCGCCGCGGCAGTCTGCACCAAGAATGGCAAAGGTGAGT-GGCA---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................GCCC--GTG-CGAATAACAGG...........................................................1813.003100002
..........................................................................................................................................................................................................................................................................................................................................................................GCGGCAGTCTGCACCAAGAATGGC........................2411.001000001
.............................................................................................................................................................................................................................................................................................................................................................GGTACTCATCGCCGCGGCAGTC.......................................2211.001010000
........................................................GA-A--GAAAC--------------CAACGAATCGCTGC...........................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................................TCGCCGCGGCAGTCTGCACC.................................2011.001000001
...................................................................................................................................................................................................................................................................................................................................................................CATCGCCGCGGCAGTCTGCACCAA...............................2411.001100000
...........................................................A--GAAAC--------------CAACGAATCGCTGC...........................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................GTCTGCACCAAGAATGGCAAAGT...................2311.001010000
............................................................................................................................................................................................................................................................................................................................................................................GGCAGTCTGCACCAAGAATGGCAAACT...................2711.001001000
droBip1
A--------------------------------GTATTTCC-TA----------GGGA-A--GAAAC--------------CAACGAATCGCTGCT----CAAAATGGTAAGTAC---ACGG--------CGA-----------CTC---AC-------------------------ACA--------CACATG----------------C-AACGTCGGCGATTT--GAGGCTTATCC----C------------------------------AAAA------------------------AACAAACTCACTCTTCC--C-ACCTATCGCCC--GTG-CAAATAACAGGTACTCATCGCCGCGGCAGTCTGCACCAAGAATGGCAAAGGTGAGT-AGC----------SizeHit CountTotal NormTotal
No Reads
droKik1
A--------------------------------GTATTTCT-GT----------GGAC-C--CA------------------------AAGCTGCT---TCAAAATGGTAAGAAA---GCGGTAGACTTGCGGCAG---------GC---ACACACCACG-AC----AAGCAC--ATAACACGACACGCACA------------------CACACGTCGGCGCTTA-T---------CG----G------AAA-------TTG-----CAA------AATATTAATAAAA--GAAATCG-----TAACCCC--------------------TCC--CTC-CCCCTGACAGGTACTCATCGCTGCGGCAGTCTGCACCAAGAATGGCAAAGGTGAGT-GGAG---------SizeHit CountTotal NormTotal
No Reads
droFic1
A--------------------------------GTATTCCC-CA----------GGAC-T--TGAAT---------------A-TCAAACGCAGCC---GCAAAATGGTAAGAGC---C---------TCCGACC----GA---CTC---AC-------------------------GCA------CACACG------------------CACACGTCGGCGATTT-CGAAGCTAATCG----GC-----------------A-----TATTCCGGAATTATCATTAAA------------------------------------------CTT--AAT-CGATTCGCAGGTACTCATTGCTGCTGCAGTCTGCACGAAGAATGGCAAAGGTGAGT-G------------SizeHit CountTotal NormTotal
No Reads
droEle1
A--------------------------------GTATTTCC-CA----------GGAG-CTAAAAAC---------------G-TTAAAAGCAGCT---GCAAAATGGTAAGAGT---C--------CACCGGCCAGCAT----------ACAC--C-----CAAACA----CACACGCA--------CACA------------------AACACGTCGGCGATTT-TGAGGCTAATCG----G-----G------------G-----TATTCCGGAATTATCATTATT----------------------------------TGTTATTAATT--ATT-CGACTTGCAGGTACTTATTGCTGCGGCAGTCTGCACGAAGAATGGCAAAGGTGAGT-AAAA---------SizeHit CountTotal NormTotal
No Reads
droRho1
A--------------------------------GTATTTTC-C------------GAC-C--TAAAC---------------G-TCAAACGCAGCT---GCAAAATGGTAAGAGC---C--------TCCCGGCCAACAT----------ACAC-------------A----CAC--ACA------CACACA------------------TACACGTCGGCGATTT-TGTGGCTAATCG----G------------------G-----TATTCCGGAATTATCATTATT------------------------------------------ATT--CTT-CGACTTGTAGGTACTTATTGCTGCGGCAGTCTGCACGAAGAATGGCAAAGGTAAGT-G------------SizeHit CountTotal NormTotal
No Reads
droBia1
A--------------------------------GTATTTCCCCA----------GGGC-T--AAAAC---------------G-TCAAGCGCAGCA---GCAAAATGGTAAGAGC---C----------CCGACC----TGACCCGCAACAC-------------------------GCA------CACACA------------------TACACGTCGGCGATTT-TGGGGCTTATCTATCGGCTGGGGAGA-------CTG-----TGTTCCGGAATTGTCATTAAA-------------------CCTACTTTTCC--CTATCCAT-ATCCGTATC-CGACTTGCAGGTACTCATTGCTGCGGCAGTATGCACGAAGAACGGCAAAGGTGAGTTGG-----------SizeHit CountTotal NormTotal
No Reads
droTak1
ACCATCCTGCGCCGTCCGCATCCGATCCGCCAAGTATTTACCCA----------GGGC-C--CAAAC---------------G-TCGAGAGCAGCT---GCAAAATGGTAAGAGC---TGGG----CCCCCGACC----TG---CAC---AC-------------------------GCA------CACAGA------------------TACACGTCGGCGATTTGTGGGGCTTATCG----GATGAGGGTATTCCGAT---TCCG--ATTCCGG-GTTATTATTATGGGGGTATTCGAGAATTAACCCCTGTT----TGT-G-------TAT--GCT-CGACTTGCAGGTACTCATTGCTGCGGCTGTTTGCACGAAGAACGGCAAAGGTGAGT-G------------SizeHit CountTotal NormTotal
No Reads
droEug1
A--------------------------------GTATTTGCCCG----------GGAC-A--AAAAC---------------G-TGAAACGCAGCT---GCAAAATGGTAAGAGC---C----------CCGACC----TA---C--------------------------------ACA------TACACA------------------TACACGTCGGCGAATT-TGGGGCTTATCG----G-----GGTA-------TTG-----TATTCCGGAATTATCGTTTAA------------------------------------------TCT--ATC-CGACTTGCAGGTCCTCATTGCTGCGGCAGTCTGCACGAAGAATGGCAAAGGTGAGT-GA-----------SizeHit CountTotal NormTotal
No Reads
dm3
A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TCAAACGCAGCA---GCAAAATGGTAAGAGC---C----------CCGACC----TA---CGC---AC-------------------------GCA------CACACC------------------TACACGTCGGCGATTT-TGGGTCTCATCG----GCGGGGGTTA-------TTG-----CATTCCGGTATTATCACTAAA------------------------------------------CCT--ATC-CGACTTGCAGGTATTAATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTAAGT-GG-----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................ATTTTC-CA----------GGGC-A--AAAAC---------------G-TC....................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCACGAAGAATGGCAAAG....................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAAACGCAGCA---GCAAAAT................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................C-A--AAAAC---------------G-TCAAACGCAGCA---GCAA...................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ATGGTAAGAGC---C----------CCGACC----TA---C.........................................................................................................................................................................................................................................................................2112.0020000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGCGGCTGTCTGCACGAAGAATGGC........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000
...........................................A----------GGGC-A--AAAAC---------------G-TCAAACGC..............................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GC-A--AAAAC---------------G-TCAAACGCAGCA---GCAAAAT................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GCTGCGGCTGTCTGCACGAAGAATGG.........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AAAC---------------G-TCAAACGCAGCA---GCA....................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GTCTGCACGAAGAATGGCAAA.....................2112.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................CACGTCGGCGATTT-TGGGT..................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...............................................................AAAC---------------G-TCAAACGCAGCA---GC.....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AGGTATTAATTGCTGCGGCTGTCTG.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AA------------------------------------------CCT--ATC-CGACTTGCAG............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCGGCTGTCTGCACGAAGAATGG.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GC-A--AAAAC---------------G-TCAAACGCAGCA---GCAA...................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AAAAC---------------G-TCAAACGCAGCA---GC.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AGCA---GCAAAATGGTAAGAG........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................................................................................................................ATCACTAAA------------------------------------------CCT--ATC-CGACTTGCAG............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TATTTTC-CA----------GGGC-A--AAAAC---------------G-TCAAAC................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCGGCTGTCTGCACGAAGAATGGCG.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ATTGCTGCGGCTGTCTGCA...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TATTAATTGCTGCGGCTGTCTGC....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................C-A--AAAAC---------------G-TCAAACGCAGCA---GC.....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AACGCAGCA---GCAAAATGGTATT..........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TC-CA----------GGGC-A--AAAAC---------------G-TCAAACGCA.............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................AAAAC---------------G-TCAAACGCAGCA---GCA....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGCGGCTGTCTGCACGAAGAATG..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GTAAGAGC---C----------CCGACC----TA---C.........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AATTGCTGCGGCTGTCTGCACG.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGCTGTCTGCACGAAGAAA...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CGCAGCA---GCAAAATGGTAAGAG........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................A----------GGGC-A--AAAAC---------------G-TCAAACGCAGCA---GC.....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TCACTAAA------------------------------------------CCT--ATC-CGACTTGCAG............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAGAATGGCAAAGGTAAGT-GG-----------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GGC-A--AAAAC---------------G-TCAAACGCAGCA---GC.....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCGGCTGTCTGCACGAAGAATG..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GGCTGTCTGCACGAAGAATGG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................C-CA----------GGGC-A--AAAAC---------------G-TCAAACG...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TATTATCACTAAA------------------------------------------CCT--ATC-CGACTTGCA.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ATCACTAAA------------------------------------------CCT--ATC-CGACT.................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................C-A--AAAAC---------------G-TCAAACGCAGCA---GCAAAA.................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AAAAC---------------G-TCAAACGCAGCA---GCAAAATGG..............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ATTAATTGCTGCGGCTGTCTG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................ACTAAA------------------------------------------CCT--ATC-CGACTTGCA.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................GATTT-TGGGTCTCATCG----GCGG...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................A---GCAAAATGGTAAGAGC---C----------CCGAC....................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................GCA---GCAAAATGGTAAGAGC---C----------C........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AACGCAGCA---GCAAAATGGTAAGAG........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGCACGAAGAATGGC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GTAAGAGC---C----------CCGACC----TA---CGC---AC-------------------------G........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CGCAGCA---GCAAAATGGTATT..........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................A----------GGGC-A--AAAAC---------------G-TCAAACGCAGCA---GCAA...................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GGCGATTT-TGGGTCTCATCG----GCGG...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CACGTCGGCGATTT-TGGGTCTCATCG----.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................A--AAAAC---------------G-TCAAACGCAGCA---GC.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGCTGTCTGCACGAAGAATGGC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GCTGTCTGCACGAAGAATGGCA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TATTTTC-CA----------GGGC-A--AAAAC---------------G-......................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................TTTC-CA----------GGGC-A--AAAAC---------------G-TCAAACGCAGC...........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TGAAACGCAGCA---GCAAAATGGTAAGAGC---T----------CCGAGC----TA---CGC---AC-------------------------GCA------CACACC------------------TACACGTCGCCGATTT-TGAGTCTCATCG----GCGGGGGTTA-------TTG-----CATTCCGGTATTATCACTAAA------------------------------------------CCT--ATC-CGACTTGCAGGTACTCATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTGAGT-GG-----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................AATGGTAAGAGC---T----------CCGAGC----TA---..........................................................................................................................................................................................................................................................................2112.00220000000000000000
........................................................................................................ATGGTAAGAGC---T----------CCGAGC----...............................................................................................................................................................................................................................................................................1811.00110000000000000000
........................................................................................................................................................................................................................................................................................ATCACTAAA------------------------------------------CCT--ATC-CGACTTG...............................................................2211.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGCGGCTGTCTGCACGAAGAATGGCAA......................2711.00100000000000010000
.......................................TC-CA----------GGGC-A--AAAAC---------------G-TGAAACGCAGC...........................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................ATTGCTGCGGCTGTCTGC....................................1811.00110000000000000000
...................................ATTTTC-CA----------GGGC-A--AAAAC---------------G-T.....................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................ACTTGCAGGTACTCATTGCTG...............................................2111.00110000000000000000
droSec2
A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TGAAACGCAGCA---GCAAAATGGTAAGAGC---T----------CCGAGC----TA---CGC---AC-------------------------GCA------CACACC------------------TACACGTCGCCGATTT-TGAGTCTCATCG----GCGGGGGTTA-------TTG-----CATTCCGGTATTATTACTAAA------------------------------------------CCT--ATC-CGACTTGTAGGTACTCATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTGAGT-GG-----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................GCGGCTGTCTGCACGAAGAATGGC........................2412.0020020
...........................................................A--AAAAC---------------G-TGAAACGCAGCA---G......................................................................................................................................................................................................................................................................................................................2012.0020020
.......................................................................................................................................................................................................................................................................................................................................................................GCTGCGGCTGTCTGCACGAAGAATGGC........................2711.0010010
...........................................A----------GGGC-A--AAAAC---------------G-TGAAACGCAGC...........................................................................................................................................................................................................................................................................................................................2311.0010100
.....................................TTTC-CA----------GGGC-A--AAAAC---------------G-TG....................................................................................................................................................................................................................................................................................................................................1911.0010010
.................................GTATTTTC-CA----------GGGC-A--AAAAC---------------G-T.....................................................................................................................................................................................................................................................................................................................................2211.0010010
droYak3
A--------------------------------GTATTTTC-CA----------GGGC-T--AAAAC---------------G-TGAAACACAGCA---GCAAAATGGTGAGAGC---C---------CCCGACC----TA---CGC---ACACA---------AACACACAC--ACACA--------CAC------AGGCACACACACCTACACGTCGGCGATTT-TTGGGCTTATCG--GGGCGGGGGTTA-------TTG-----TATTTCGGTATTATCACTAAA------------------------------------------CCT--ATC-CGACTTGCAGGTACTCATTGCTGCGGCTGTCTGCACGAAGAATGGCAAAGGTGAGT-GG-----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................GGTACTCATTGCTGCGGCTGT........................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................GTCTGCACGAAGAATGGCAAA.....................2111.00100000010000
..........................................CA----------GGGC-T--AAAAC---------------G-TGAAAC................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.........................................................C-T--AAAAC---------------G-TGAAACACAGCA---GCAAAAT................................................................................................................................................................................................................................................................................................................2711.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................GTCTGCACGAAGAATGGC........................1811.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................GTCTGCACGAAGAATGGCAAAGT...................2311.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................CTGCACGAAGAATGGCAAAGTG..................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................ACTTGCAGGTACTCATTGCTGC..............................................2211.00100100000000
................................................................................................................................................................................................................CCTACACGTCGGCGATTT-TTGG...................................................................................................................................................................................2211.00100100000000
......................................................................................................................................................................................................................................................................................................................................................ACTTGCAGGTACTCATTG..................................................1811.00100100000000
droEre2
A--------------------------------GTATTTTC-CA----------GGGC-A--AAAAC---------------G-TGAAACGCAGCA---GCAAAATGGTAAGAGC---C---------CCCGACC----TA---CGC---ACAC-------------A----C----GC----------AC--ACACAGGCATACACACCTACACGTCGGCGATTT-TGGGGCTTAG-G----GCGAGGGTTA-------TTG-----TATTCCGGTATTATCACTAAA------------------------------------------CGT--ATC-CGACTTGCAGGTACTCATTGCTGCGGCTGTATGCACGAAGAATGGCAAAGGTAAGT-GG-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................CTGCGGCTGTATGCACGAAGAATG..........................2411.0011000000

Generated: 05/16/2015 at 09:15 PM