ID:

dvi_12759

 Coordinate:

scaffold_12970:1095206-1095356 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.7 -12.7 -12.1 -11.9

Flybase annnotation

exon [dvir_GLEANR_3984:4]; CDS [Dvir\GJ19098-cds]; intron [Dvir\GJ19098-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
mature
  1. scaffold_12723:4703720-4703745 +
  2. scaffold_12855:349150-349175 -
  3. scaffold_12963:4949577-4949602 +
  4. dvi_12759  scaffold_12970:1095283-1095308 +
  5. scaffold_13036:50720-50745 +
  6. scaffold_13047:375716-375741 -
star
  1. scaffold_179:4307-4327 +
  2. scaffold_12855:10103448-10103468 -
  3. scaffold_12875:15487397-15487417 +
  4. scaffold_12936:600963-600983 -
  5. scaffold_12937:291003-291023 -
  6. scaffold_12963:14224138-14224158 -
  7. scaffold_12970:249690-249710 +
  8. dvi_12759  scaffold_12970:1095334-1095354 +
  9. scaffold_12970:4100189-4100209 -
  10. scaffold_13042:1748739-1748759 -
  11. scaffold_13047:18659807-18659827 -
  12. scaffold_13050:332838-332858 +
  13. scaffold_13050:2902888-2902908 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGGGCCACACTACTTTATGTGCAAAACTATGCCTTTCCCTACAGCATTGTAAGTAAGACACTTGTTTGAGATCTTTTTATACCCTGAACCCATTAAAAATTGGTAAAAAGGGTATAATGTTTTTATGCAAATGTATGCAACAGGCAGAAGGAAGCATCTCCGACTCTTGATCACCATCAATAGCCGAGTCGATCTATCCACGTCCGTCTGTGTGTCCGTCGGCCTGTACGTATAAACGCATCTCAAAAT
*******************************************************************************************************************************..............................((...(((((((((((....))))).....))))))....))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060684
140x9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 M061
embryo
 SRR060665
9_females_carcasses_total
 V053
head
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060679
140x9_testes_total
 SRR060688
160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 GSM1528803
follicle cells		 SRR060654
160x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060673
9_ovaries_total
...............................................................................................................................TGCAAATGTATGCAACAGGCAGAAGG.................................................................................................. 26 0 6 2.17 13 2 2 4 0 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGCAAATGTATGCAACAGGCAGAAGGA................................................................................................. 27 0 5 1.80 9 1 2 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................AAACTATGCCTTTCCCTACAGC............................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CACGTCCGTCTGTGTGTCCGTC............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATGTGCAAAACTATGCCTTTCCCT................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTTATGTGCAAAACTATGCCTTTCCC.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GGGCCACACTACTTTATGT..................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ATTGTAAGTAAGACACTTGTTTGAG................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGAGATCTTTTTACAGCCTGAT................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTGCAAAACTATGCCTTTCC................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GCAAAACTATGCCTTTCCCTACA.............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGCAAATGTATGCAACAGGCAGAAG................................................................................................... 25 0 8 0.50 4 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGCAAATGTATGCAACAGGCAGAAGGAA................................................................................................ 28 0 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCCGGCCTGTACTTGTAAAC............ 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GCAAATGTATGCAACAGGCAGAAGGAA................................................................................................ 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GCAAATGTATGCAACAGGCAGAAGG.................................................................................................. 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGCAAATGTATGCAACAGGCAGA..................................................................................................... 23 0 13 0.15 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................TATGCAACAGTCAGAAGGAAGCATC........................................................................................... 25 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTATGCAACAGGCAGAAGGAAGCATC........................................................................................... 26 0 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
...............................................................................................................................TGCAAATGTATGCAACAGGCA....................................................................................................... 21 0 17 0.12 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCAGAAGGAAGCATCTCCGACT.................................................................................... 22 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................TGCAAATGTACGCAACAGGCAGAAGGA................................................................................................. 27 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAATGTATGCAACAGGCAGAAGGAAGC.............................................................................................. 27 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCAATAGCCGAGTCGATCTAT.................................................... 21 0 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CAACAGGCAGAAGGAAGCATCTCCG....................................................................................... 25 0 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCATCAATAGCCGAGTCGATC....................................................... 21 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................CAAATGTATGCAACAGGCAGAAGGA................................................................................................. 25 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................TGATCACCATCAATAGCCGAGTC........................................................... 23 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATGTATGCAACAGGCAGAAGGAAGCA............................................................................................. 27 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................CAAATGTATGCAACAGGCAGAAGG.................................................................................................. 24 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGCAAATGTATGCAACAGCCAGAAG................................................................................................... 25 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................TATGCAACAGTCAGAAGGAAGCATCTC......................................................................................... 27 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAATGTATGCAACAGGCAGAAGGAA................................................................................................ 25 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGTATGCAACAGGCAGAAGGAAG............................................................................................... 23 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................TGCAACAGTCAGAAGGAAGCATCTCC........................................................................................ 26 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGAAGGAAGCATCTCCGACT.................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CTCATGATCACCATCAAAA................................................................... 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGTATGCAACAGGCAGACGGAAG............................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................TTATACCCTGAACCCATTAAAAAT..................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................GCAGAAGGAAGCATCTCCG....................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................AATTGGTGAAAAGGGTATAACT.................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................CATCAATAGCCGAGTCGATCT...................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TCTGTGTGTGAGTCGGCC......................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TGCAACAGGCAGAAGGAAGCTTCTCC........................................................................................ 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCACCCGGTGTGATGAAATACACGTTTTGATACGGAAAGGGATGTCGTAACATTCATTCTGTGAACAAACTCTAGAAAAATATGGGACTTGGGTAATTTTTAACCATTTTTCCCATATTACAAAAATACGTTTACATACGTTGTCCGTCTTCCTTCGTAGAGGCTGAGAACTAGTGGTAGTTATCGGCTCAGCTAGATAGGTGCAGGCAGACACACAGGCAGCCGGACATGCATATTTGCGTAGAGTTTTA
****************************************************..............................((...(((((((((((....))))).....))))))....))******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060670
9_testes_total
 SRR060680
 9xArg_testes_total
 V047
embryo
...................................................................................................................................................................................................................CACACTAGCAGCCTGACAT..................... 19 3 15 0.27 4 4 0 0 0 0 0 0
..................................................................................TGGGACTTGGGTAATTTTTA..................................................................................................................................................... 20 0 20 0.25 5 0 5 0 0 0 0 0
.......................................................................CTAGAAAAATATGGGACTTGGGTAATT......................................................................................................................................................... 27 0 5 0.20 1 0 0 0 1 0 0 0
......................................................................TCTAGAAAAATATGGGACTTGGGT............................................................................................................................................................. 24 0 5 0.20 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................ACACACTAGCAGCCTGACAT..................... 20 3 11 0.09 1 1 0 0 0 0 0 0
...............................................................................................................................................................................GGTAGTTATCGGCTCAGCT......................................................... 19 0 14 0.07 1 0 0 1 0 0 0 0
........................................................................................................................................................................AACTAGTGGTAGTTATCGGC............................................................... 20 0 18 0.06 1 0 0 0 0 0 1 0
..........................................................................................................................................CGTTGTCCGTCTTCCTTCGTA............................................................................................ 21 0 19 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................................................CTAGTTATCGGCTCAGCTAGATA.................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0
.....................................................................................................................................ACATACGTTGTCCGTCTTCCT................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0
................................AGGAAATGGATGTCATAAC........................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1
...................................................................................................................................................................................GTTATCGGCTCAGCTAGATA.................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12970:1095156-1095406 + dvi_12759 GGTGGGCC----ACAC----------------------------TACTTTATGTGCAAAACTA------------------------TGCCTTTCCCTACAGCATTG---------------------------------------------------------TAAG-----------------------TAAG-AC--ACT---TG---------TTTG--------------------A-----------------------------GATCTTTTTATACCCTGAACCCATTAAAAATTGGTAAAAAGGGTATAATGTTTTTATGCAAA-------TGTATGCAACAGGCAGAAGGAAGCATCTCCGAC--------------------TCTTGATCACCATCAATAGCCGAGTCGATCTATCCACGTCCGTCTGTGTGTCCGTCGGCCTGTA----C--------GTATAAACGC----ATCTCAA-----AAT
droMoj3 scaffold_6496:26568923-26569183 + GCCAT-------GCT------------------------------GATGTGGGTGCAAAAACG---------------------------------------------------G-----------TG-----------------------------------------TCAGTTTTTGCAATGATGGTTGCAAT-AC-------------GATTGATT---------------------------TCT----------------------TAATTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGCAATCATCGCAGACCCCA--TAAAGTATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTC--------CGTC----C--------GTATGAGCAAAAGGATCTCAG-----AAG
droGri2 scaffold_14624:1003445-1003676 + TATCT-------TATC----------------------------TGCTTA-----------TC------------------------TGCATCTTTATAGAGCGCA---------------------------------------------------------TAAAG-----------------------CAAACA------GCTTCTG---------GG--------------------A-----------------------------TAAATTTTTATACTCTGAACCCATTACAAATGGATAAAAAGGGTATAATGGTTTTCTGCAAA-----------TGTAACAGGCAGAAGAAAG-----------------AAACTAGATATATTCTTGATCAGGGTGAACAGACGACGCGATATAGCCGTGTCCGTCTGTTCGTC--------CGTC----T--------GCATGAACACGCGGATCCCAG-----ACA
droWil2 scf2_1100000004909:8858748-8859023 + TGTGG-------GAATTCTAATATGTGTGTGTATCCAAGTGTCTTACCCC---------------------------------------------------A------------------AC----CA------TAAAAAATTGG--------------------AAGCT-----------------------AAC------G---------------T----------------------------------------------------TGAGTTTTTATACCATACACCCATA-------GGGTGAAATGGTATATTAAAGTTGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCACCTCCGACCCCA--CAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTATGAACACCTAGATCTCGG-----AGA
dp5 Unknown_singleton_2278:1020-1258 + CTGCT-------------------------------------------GTTAGTTTAAAAATA------------------------TTTAATTCTTTTAAGTTTTTAAGCT----------------------------------------------------------------------------------------ATT---T----------------------------------------------------------------GTATTTATTATACCCGATACTCAAA----AT-GAGTATTGGGGTATATTCGATTTTTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCA------------------TTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGACCGTCTGCCCGTCC--------CTATTAGCGCCTAGTGCTCA-------AA
droPer2 scaffold_84:65503-65759 + CTGCT-------------------------------------------GTTAGTTAAAAAATA------------------------TTTAATTCTTTTAAGCTTTTAAGCT----------------------------------------------------------------------------------------ATT---T----------------------------------------------------------------GTATTTATTATACCCGATACTCAAA----AT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCA--TAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCCGTCTGTCCGTCC--------CTATTAGCGCCTAGTGCTCAA-----AGA
droAna3 scaffold_13417:4899920-4900146 + TTTAT--ATTAAATG---------------------------------------------CTATGACTTAGCA-------------------------AAAACT----------------------TG------TAAAGATA---------CAG----------------------------------------------------------------A-------------------------------------------------TCGGAAATTTTTGTAACCGGTACACGTA-------GAATACAAGGGTATGTTGACTTCGTGTGAA-------TGTATTTAACAGGGAGAAGGAATCGTCTCCGAGCCCA--TAAAGTACATATATTA-AGATCAGCCTCACCAGCCGAGTTGATATAACCATGTCCGTCTGTCT----------------------------GTATGAACATGTGGAGCTCAA-----AGA
droBip1 scf7180000391410:21132-21362 - GGTGA-------CATTTC---------------------------TCACCTTACTTATCAATG------------------------TCTATTCC---------------------------------------TATATTTT---------CAG---------TAAAG-----------------------AAAAC--------------------------------------------------C------------------------TTTTTTTTTAAACCAGGTACTCCTA-------GAGTACAAGGGTATATTGTAGTCGTGTGAA---TGTATGTATGTAACATAGAGAAGAAACGATCT------CCA--TTTAATATAAATATTCTTGATCAGCATCAACAGCCGAGTCGATAGAGCTTTGGCCGTCCGTCCGTC--------TTTA----C--------GTACGAACGT------------------A
droKik1 scf7180000302683:201471-201707 + TATAT-------GTTT----------------------------TCCTTGTTGG----------------------------CGTGT-ATGAA-----GGAACT----------------------TCCAA---------------------------------------------------GCAAAGTTGC-----------------GCGATAGATT---------------------------TTTT---------------------GAAATTTTTATACCCTT--------------------GCAGGGTTTTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTA--TAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCTGTCC--------GTTTCTACGC------------------A
droFic1 scf7180000453932:667811-668052 + ATTTC------------------------------------------TATATATGTAGATTTT------------------------TCGATTTTTCTATAGCTAGA--------------T----GA------TATTACATAGG--------------------TGTCT-----------------------GAT------GTCTTT-----------------------------------------------------TATG------ACATTTTTTATACCCC----TTGCA-------GAGCAAAAGGATATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTTAGACCCCA--TAAAGTATATATATTCTTGATCAGCATCACCATCTGAGTCGAACTATGTATGTACGTCTGTCCGTCTGTCCGTCGGTC----C--------GT---------------------------
droEle1 scf7180000490763:17754-18001 - GGTGA-------CAAC-CTAATAAATATCTTTA----------------------ACCAGCTC------------------------TGCTTTTCTCTACACCTAAC---TC---CTTTATT-----C-----------------------------------------TAATAT-----------------------------TTTT---------TTATAAATTTAAAAACATAAGTAG--------------------ATTTAAATCAATCATATTTATACCCTT-----GCA-------------GAGGGTATTATAATTTCAGTCAG-------------------------------------------------AAATATATATATTCTTGATCAGCATCACTAGGAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGT--------T----T--------CTACGCAAACAAGTCCCTCAGGTTTAAAG
droRho1 scf7180000771304:740-982 + GATGA-------GTAC----------------------------AACTGTTTGGCAAA--A-----------------TTGCTTT----------------A------------------TT----TG------TAAATATT---------TGG---------------------------------------------------------------TTAA--------------------A-----------------------------TACATATTTATACCCGTTACTCGTA-------GAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGGTAAAAGGAAGCGTTTCCGACCCTA--TAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCTGTCCGT----CTGTCTGTCTGTC----C--------GTATGAACGCTGAGATCTCGG-----AAA
droBia1 scf7180000301467:41323-41563 + GTGAA-------AAA---------------------------------------------CTTAAACTTTTCACAAATTTGTCGTAT------------------------------------------------------------------------------AAG-----------------------AAAG-AGCTT--------------TATT----------------------------------------------------TATTTTTTCATACCCGTTACTCGTA-------GAGTAAAAGGGTATACTAGATTCGTCGGAA-------AGTATG-AACAGGCTAAAGGAAGCGTTTCC----CCA--TAAAGTATAAATATTCTTGATCAGGATCACAAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTATGTCCGTCCGTC----C--------GTATGAAATCAGAGATCTCGG-----AAA
droTak1 scf7180000411343:6543-6800 + AGTGG-------GCAT----------------------------TACTTTATCTGCAAAAGTA-------------------------------------------------------------------------------TATAAGCTTCGGCTGGCCGAA-----------------------G----GT---AGCTT--------------CC------------------------------------------------------TTTCTTGTTATACCCGTTACTCGTA-------GAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAAAAGCTGGAAGGAAGCGTTTCCGACCCCA--TAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGCCTGTCCGTCTGTCTGTCTGTCTGTCC--------GTATGAACGCTGAGATCTCGG-----AAA
droEug1 scf7180000407820:43706-43959 - GTAGG-------GCTC-AT-------------------------CACAACAAGTATAAAACTT------------------------TTCATTCCTGCAAAACATTA------------ATAGTGAAT------TATTAAAAAAG--------------------TAT---------------------------------------------------------TTATAAACATAACACA--------------------AATT------GAATTTTTTATATCTCTTACAAATA-------GATCTAAAGGAAATATTGTATTCGATGAAA-------AGTATTTAACAGCCATAATGAAGCATTTCCGACTCTA----------------------------TTAATAACCGAGTTAATTTAGCCATGTCCGTCTGTCTGTC--------TGTC----C--------GTATGAACGCTAAGCTCTCAG-----CAA
dm3 chr3R:7633341-7633583 - AATGC--C----GCAC----------------------------TGCTTAATGGGTCAAGCAG------------------------TGCGCT----------------------------------------------------------------------GATAT-----------------------CTAACA------GCTCGCG--ACAAA--AG--------------------ATAAGCTTTCAGT--CTCTT------------------TATACCCGTTACTCGTA-------ATTTAAAAGGGTATACTAGACTTCTTAA------------------------GATGAAAACGTTTCCGACCATAGACCTAGTATATATACTCTTGATCAGGATCAATAGCCGTATCGATCTGGCCCTACCCGTCTGTTTTT-------TCCGTT----C--------GTACGAACGTCGAGATCTCCG-----AAA
droSim2 node_28136:9333-9570 - GTCCA-------AAA---------------------------------------------CTA-AAC--------------------------TGCATACACTATTTAAAGAAGT-----------TG-----------------------------------------TAATAT------------------------------------------------------------------------------------------------TTTTTAATAATACCCGCTACTCGTA-------GAGTAAAAGTATATACTAGTTTCGTTGAAA-------AGTATGTACCAGGCAGATGGCAGCGTTTTCGACTATA--TAAAGTATATATATTCTTGAT-AGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGCCCGACTGTCCGTCTGTC----C--------GTATGAACGTCGAGATTACAG-----GAA
droSec2 scaffold_8:2323692-2323935 + GAATGCTT----GCAC----------------------------AACAGTATGCTTTAAACAA------------------------TGCACTTCGGCGATGTTCTTAAAAAATT-----------TGCAATCCCA---------------CAG----------------------------------TTTC-----------------GAAATAAAAT---------------------------T------------------------TTTATAATTATACCCATCACTTGTA-------GAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCGGAAGACAGCGTTTCCGACTATA--CAAAGTATATATATTCTTGATCAGGATC--------------------------------------TGTCTGTCCGTC----C--------GTATGAACGCCGATATCTCGG-----AAG
droYak3 v2_chrX_random_046:218255-218510 + TATAG-------GGT----------------------------------TATGAGCGATATTG------------------------GACGTA-------------------------------------------------TGAAAACTGCATTTGAGGAAA---------------------------------AA--A----------------CT---------------------------ATTTCGTTCGATAGT------------------TATACCCGTTACTCGTA-------GAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATA--TAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTC----C--------GTATGAACGTCGAGATCTCAG-----GAA
droEre2 scaffold_4690:15296895-15297132 + ACTAA-------A-----------------------------------ATATATGAAAAATTT--------------------------------------------CCAACAGC---------------------------------------------------------------------------------AGCA-------------TTGTCT---------------------------TTTTCATATCCTTTT------------------TATTCCCGTTACTCGTA-------GAGTAAGAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTTCGA---TA--TAAAGTACATATATTCTTGATCAGGATCAATAGCCGACTCGAACAGGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTC----C--------GTGTGAACTCCTCGATCTCAG-----GAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGTGGGCC----ACAC----------------------------TACTTTATGTGCAAAACTA------------------------TGCCTTTCCCTACAGCATTG---------------------------------------------------------TAAG-----------------------TAAG-AC--ACT---TG---------TTTG--------------------A-----------------------------GATCTTTTTATACCCTGAACCCATTAAAAATTGGTAAAAAGGGTATAATGTTTTTATGCAAA-------TGTATGCAACAGGCAGAAGGAAGCATCTCCGAC--------------------TCTTGATCACCATCAATAGCCGAGTCGATCTATCCACGTCCGTCTGTGTGTCCGTCGGCCTGTA----C--------GTATAAACGC----ATCTCAA-----AATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................TGCAAA-------TGTATGCAACAGGCAGAAGG...........................................................................................................................................2662.1713002000000000000000000000400200002020001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TGCAAA-------TGTATGCAACAGGCAGAAGGA..........................................................................................................................................2751.809001000000000000000000000140100000020000000000000000000000000000
.........................................................AAACTA------------------------TGCCTTTCCCTACAGC............................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTCCGTCTGTGTGTCCGTC..................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................ATGTGCAAAACTA------------------------TGCCTTTCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................TTTATGTGCAAAACTA------------------------TGCCTTTCCC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
...GGGCC----ACAC----------------------------TACTTTATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ATTG---------------------------------------------------------TAAG-----------------------TAAG-AC--ACT---TG---------TTTG--------------------A-----------------------------G...................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................................................GTGCAAAACTA------------------------TGCCTTTCC...................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................GCAAAACTA------------------------TGCCTTTCCCTACA..............................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TGCAAA-------TGTATGCAACAGGCAGAAG............................................................................................................................................2580.504000000000000000000000000010100000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TGCAAA-------TGTATGCAACAGGCAGAAGGAA.........................................................................................................................................2850.402000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCAAA-------TGTATGCAACAGGCAGAAGGAA.........................................................................................................................................2750.201000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCAAA-------TGTATGCAACAGGCAGAAGG...........................................................................................................................................2560.171001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TGCAAA-------TGTATGCAACAGGCAGA..............................................................................................................................................23130.152000000002000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GTATGCAACAGGCAGAAGGAAGCATC....................................................................................................................................26140.142000000000000000000000000001000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TGCAAA-------TGTATGCAACAGGCA................................................................................................................................................21170.122001000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGAC--------------------T.........................................................................................................22200.102000000000100000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------TGTATGCAACAGGCAGAAGGAAGC.......................................................................................................................................27130.081001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAT.........................................................................21130.081000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CAACAGGCAGAAGGAAGCATCTCCG................................................................................................................................25130.081000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAATAGCCGAGTCGATC............................................................................21130.081000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CAAA-------TGTATGCAACAGGCAGAAGGA..........................................................................................................................................25140.071000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGATCACCATCAATAGCCGAGTC................................................................................23140.071000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................AA-------TGTATGCAACAGGCAGAAGGAAGCA......................................................................................................................................27140.071000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CAAA-------TGTATGCAACAGGCAGAAGG...........................................................................................................................................24150.071001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------TGTATGCAACAGGCAGAAGGAA.........................................................................................................................................25160.061000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TGTATGCAACAGGCAGAAGGAAG........................................................................................................................................23180.061000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCATCTCCGAC--------------------T.........................................................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TTATACCCTGAACCCATTAAAAAT.....................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCG................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATCT...........................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
GCCAT-------GCT------------------------------GATGTGGGTGCAAAAACG---------------------------------------------------G-----------TG-----------------------------------------TCAGTTTTTGCAATGATGGTTGCAAT-AC-------------GATTGATT---------------------------TCT----------------------TAATTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGT-GAAA-------AGTATGTAACAGGCAGAAGCAATCATCGCAGACCCCA--TAAAGTATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTC--------CGTC----C--------GTATGAGCAAAAGGATCTCAG-----AAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGATT---------------------------.............................................................................................................................................................................................................................................................26316.675010000400
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGAT.........................................................................................................................................................................................................................................................................................2534.00122000100
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTG...........................................................................................................................................................................................................................................................................................2331.675410000
....................................................................................................................................................................................AATGATGGTTGCAAT-AC-------------GATTGATT---------------------------.............................................................................................................................................................................................................................................................2531.003200010
......................................................................................................................................................................................................................................................TCT----------------------TAATTTTTTATACCCTGAACC...............................................................................................................................................................................................................2411.001000010
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGATC---------------------------.............................................................................................................................................................................................................................................................2631.003000030
..............................................................................................................................................................................................................................................................................................................GGGAAATCAGGGTATAATGGTTTTG............................................................................................................................................................................25200.95191900000
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGATT---------------------------TC...........................................................................................................................................................................................................................................................2820.501100000
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------G...............................................................................................................................................................................................................................................................................................1930.331100000
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGATT---------------------------C............................................................................................................................................................................................................................................................2730.331100000
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GAT.............................................................................................................................................................................................................................................................................................2130.331100000
....................................................................................................................................................................................AATGATGGTTGCAAT-AC-------------GATT............................................................................................................................................................................................................................................................................................2130.331100000
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGAC.........................................................................................................................................................................................................................................................................................2530.331000010
....................................................................................................................................................................................AATGATGGTTGCAAT-AC-------------GATTG...........................................................................................................................................................................................................................................................................................2230.331100000
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATT............................................................................................................................................................................................................................................................................................2230.331000010
..................................................................................................................................................................................GCAATGATGGTTGCAAT-AC-------------GATTGATT---------------------------.............................................................................................................................................................................................................................................................2730.331100000
....................................................................................................................................................................................AATGATGGTTGCAAT-AC-------------GATTGATT---------------------------T............................................................................................................................................................................................................................................................2630.331100000
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGATT---------------------------T............................................................................................................................................................................................................................................................2730.331000010
...................................................................................................................................................................................CAATGATGGTTGCAAT-AC-------------GATTGAG.........................................................................................................................................................................................................................................................................................2530.331000010
........................................................................................................................................................................................................................................................T----------------------TAATTTTTTATACCCTGAACCC..............................................................................................................................................................................................................2360.171100000
.......................................................................................................................................................................................................................................................................................................................................T-GAAA-------AGTATGTAACAGGCAGAAGCAATC.......................................................................................................................................2960.171100000
.........................................................................................................................................................................................................................................................................................................................GTATAATGGTTTTGT-GAAA-------...............................................................................................................................................................19200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACGACGAGCTGA...................................................................................21200.102200000
.............................................GATGTGGGTGCAAAAACG---------------------------------------------------G-----------TG-----------------------------------------TCA.......................................................................................................................................................................................................................................................................................................................................24110.091100000
...AT-------GCT------------------------------GATGTGGGTGCAAAAACG---------------------------------------------------G-----------.....................................................................................................................................................................................................................................................................................................................................................................................24120.081100000
...........................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAGGCAGAAG............................................................................................................................................21200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----C--------GTATGAGCAAAAGGATCTC..........21200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----C--------GTATGAGCAAAAGGATCT...........21200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCCTGTCCGTCTGTCCGTC--------..............................................28200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGAGTCGATATAGCCC......................................................................21200.051010000
...........................................................................................................................................................................................................................................................................................................AATGGGAAATCAGGGTAT......................................................................................................................................................................................18200.051001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTCCGTC--------CGTC----C--------GTATG........................22200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCCTGTCCGTCTGT...........................................................23200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----C--------GTATGAGCAAAAGGATCTCAG-----A..25200.051100000
.CCAT-------GCT------------------------------GATGTGGGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
..............................................................................................................................................................................................................................................................................................................................ATGGTTTTGT-GAAA-------AGTATGTAA......................................................................................................................................................23200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTC----C--------GTATGAGCAAAAGGAT.............21200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGAC.............................................................................................21200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTCCGTCTGTCCGTC--------CGTC----C--------.............................24200.051100000
droGri2
TATCT-------TATC----------------------------TGCTTA-----------TC------------------------TGCATCTTTATAGAGCGCA---------------------------------------------------------TAAAG-----------------------CAAACA------GCTTCTG---------GG--------------------A-----------------------------TAAATTTTTATACTCTGAACCCATTACAAATGGATAAAAAGGGTATAATGGTTTTCTGCAAA-----------TGTAACAGGCAGAAGAAAG-----------------AAACTAGATATATTCTTGATCAGGGTGAACAGACGACGCGATATAGCCGTGTCCGTCTGTTCGTC--------CGTC----T--------GCATGAACACGCGGATCCCAG-----ACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGTGG-------GAATTCTAATATGTGTGTGTATCCAAGTGTCTTACCCC---------------------------------------------------A------------------AC----CA------TAAAAAATTGG--------------------AAGCT-----------------------AAC------G---------------T----------------------------------------------------TGAGTTTTTATACCATACACCCATA-------GGGTGAAATGGTATATTAAAGTTGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCACCTCCGACCCCA--CAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTATGAACACCTAGATCTCGG-----AGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCACC....................................................................................................................................27130.15202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAG.........................................................................21200.15303000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCT.............................................................21200.15303000
...................................................................................................................................................................................................................................................................................TTTTTATACCATACACCCATA-------GGGT................................................................................................................................................................................................25200.15300030
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTCCGTC......................................................28200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCCGTCCGTCCG................................................25200.10202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCGTCC.....................................................25200.10200020
..........................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCACCTCCGACC.............................................................................................................................28130.08101000
.........................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCAC.....................................................................................................................................21170.06101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTCCGTATGAAC.....................20200.05110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCCGTCCGTCCGTCCGT.......................................25200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCCGTCC.....................................................24200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCCGTCCGTCC.............................................25200.05101000
............................................................................................................................................................................................................................................................................................................................TATTAAAGTTGCCAAAA-------TGTA...........................................................................................................................................................21200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCGTCCGTCCGTC..............................................21200.05100100
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAACAACCG....................................................................................21200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................TATATATATTCTTGATCAGG...............................................................................................20200.05101000
.....................................................................................................................................................................................................................................................................................................ATA-------GGGTGAAATGGTATATTAAAGTT.............................................................................................................................................................................26200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTCCGTCC.....................................................29200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTCCGTATGAA......................22200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCCGTCCG................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCC.....................................................18200.05110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGTCCGTCCGTCCGTATGAACACC..................28200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAACAACCGA...................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCCGTCC.................................................22200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAGTCGATCTAGCCATGTCC.................................................................24200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCA--CAAAGTATATATATTC........................................................................................................26200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTATGAACACCTAGATCT...........25200.05101000
dp5
CTGCT-------------------------------------------GTTAGTTTAAAAATA------------------------TTTAATTCTTTTAAGTTTTTAAGCT----------------------------------------------------------------------------------------ATT---T----------------------------------------------------------------GTATTTATTATACCCGATACTCAAA----AT-GAGTATTGGGGTATATTCGATTTTTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCA------------------TTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCTGACCGTCTGCCCGTCC--------CTATTAGCGCCTAGTGCTCA-------AASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGT.......................................................22202.505004500302000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGTG.........................................................................................................................................................23112.182402000021460
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGT.................................................................................23202.004000004000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGC..............................................................................26200.951901900000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATTGAGCCATGTCTGT...............................................................21200.901801800000000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGT..........................................................................................................................................................22120.7590810000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTCCG........................................................20200.701401400000000
.....................................................................................................................................................................................................................................................................................................................................TTTGGTAAAAGTGGATGTGTG.........................................................................................................................................................21110.6470000000250
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTC..........................................................19200.601201200000000
..........................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCA------------------TTGATCAGCATCA...........................................................................................2820.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCA------------------TTGA....................................................................................................2620.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCTGAA..................................................2750.4020000000200
....................................................................................................................................................................................................................................................................................................................................TTTTGGTAAAAGTGGATGTGTG.........................................................................................................................................................22110.3640200000200
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCG....................................................................................20200.3570000007000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTG...........................................................................................................................................................21120.3340100200010
...............................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCC...........................................................................................................................25200.3060050100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAG.........................................................................19200.3060600000000
..................................................................................................................................................................................................................................................................................................................................ATTTTTGGTAAAAGTGGATGTGTG.........................................................................................................................................................24110.2730000000030
........................................................................................................................................................................................................................................................................................................................................................................................A------------------TTGATCAGCATCAATAGCCGAGTCGA..............................................................................27190.2650000000320
.............................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACGTCC.................................................................................................................................................21200.2550500000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTCCGTCTGACC.................................................2740.2510100000000
.............................................................................................................................................................................................................................................................................................CGATACTCAAA----AT-GAGTATTGGGGTA.......................................................................................................................................................................................26200.2550500000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCTGAC..................................................2740.2510000000100
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGA..........................................................................................................................................................22120.2530300000000
..................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGACCC............................................................................................................................21200.2040400000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTCT.............................................................20200.2040000004000
..................................................................................................................................................................................................................................................................................................................................................GATGTGTGTAACGTCCAGAA.............................................................................................................................................20200.2040400000000
...................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCA------------------T.......................................................................................................23200.2040040000000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGTGT........................................................................................................................................................24100.2020100000100
.....................................................................................................................................................................................................................................................................................................................................TTTGGTAAAAGTGGATGTGTGT........................................................................................................................................................22100.2020100001000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGTT.........................................................................................................................................................23160.1930000000300
.............................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCCGACC.............................................................................................................................25200.1530030000000
...........................................................................................................................................................................................................................................................................................................................................AAAAGTGGATGTGTGTAAC.....................................................................................................................................................19200.1530000003000
........................................................................................................................................................................................................................................................................................................................................................................................A------------------TTGATCAGCATCAATAGCCGAGTCGT..............................................................................27200.1530100000200
........................................................................................................................................................................................................................................................................................................................................................................................A------------------TTGATCAGCATCAATAGCCGAGTCG...............................................................................26200.1530200000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCT.....................................................24200.1530020100000
...................................................................................................................................................................................................................................................................................................TCAAA----AT-GAGTATTGGGGTATATTCG.................................................................................................................................................................................26140.1420200000000
............................................................................................................................................................................................................................................................................................................AT-GAGTATTGGGGTATATTC..................................................................................................................................................................................20150.1320100001000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATC.............................................................................................................................................................19160.1320000000020
.....................................................................................................................................................................................................................................................................................................................................TTTGGTAAAAGTGGATGTGTGTA.......................................................................................................................................................23100.1010100000000
.....................................................................................................................................................................................................................................................................................................................................TTTGGTAAAAGTGGATGTGTGTAA......................................................................................................................................................24100.1010100000000
........................................................................................................................................................................................................................................................................................................................................................TGTAACGTCCAGAAGGAATCGTT....................................................................................................................................23200.1020200000000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGTGTAA......................................................................................................................................................26100.1010000001000
......................................................................................................................................................................................................................................................................................................................................TTGGTAAAAGTGGATGTGTGTAACGT...................................................................................................................................................26100.1010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCATGTCTGTCTGTCC.........................................................21200.1020000000020
..............................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCC.................................................................................................................................20200.1020000002000
..................................................................................................................................................................................................................................................................................TTTATTATACCCGATACTCAAA----AC-....................................................................................................................................................................................................24200.1020000000020
............................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATTGAGCCATG....................................................................19200.1020000000020
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTCTGTCC.........................................................24200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTCTG....................................................20200.1020000000020
....................................................................................................................................................................................................................................................................................TATTATACCCGATACTCAAA----AT-GA..................................................................................................................................................................................................24200.1020000000200
......................................................................................................................................................................................................................................................................................................................................................................GGAATCGTTTCCGACCCCA------------------T.......................................................................................................20200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGCGCCTAGTGCTCA-------A.20200.1020100010000
.........................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGTA.......................................................................................................................................................19200.1020000002000
....................................................................................................................................................................................................................................................................................................................................TTTTGGTAAAAGTGGATGTGTGTAACGT...................................................................................................................................................28100.1010100000000
......................................................................................................................................................................................................................................................................................................................................TTGGTAAAAGTGGATGTGTG.........................................................................................................................................................20110.0910000000010
.....................................................................................................................................................................................................................................................................................................................................TTTGGTAAAAGTGGATGTG...........................................................................................................................................................19120.0810100000000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGT............................................................................................................................................................20120.0810010000000
....................................................................................................................................................................................................................................................................................................................................TTTTGGTAAAAGTGGATGTG...........................................................................................................................................................20120.0810000000010
........................................................................................................................................................................................................................................................................................................................................................................................A------------------TTGATCAGCATCAATAGCCGAGTCGATT............................................................................29120.0810000000010
..................................................................................................................................................................................................................................................................................................................................ATTTTTGGTAAAAGTGGATGTGT..........................................................................................................................................................23120.0810100000000
.....................................................................................................................................................................................................................................................................................................................................TTTGGTAAAAGTGGATGTGT..........................................................................................................................................................20120.0810000001000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATG.............................................................................................................................................................19120.0810000001000
.....................................................................................................................................................................................................................................................................................................................................TTTGGTAAAAGTGGATGTGA..........................................................................................................................................................20130.0810000000100
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGC..........................................................................................................................................................22140.0710010000000
....................................................................................................................................................................................................................................................................................................................................TTTTGGTAAAAGTGGATGTGC..........................................................................................................................................................21140.0710010000000
..................................................................................................................................................................................................................................................................................................CTCAAA----AT-GAGTATTGGGGTATATTCG.................................................................................................................................................................................27140.0710100000000
.................................................................................................................................................................................................................................................................................................................................GATTTTTGGTAAAAGTGG................................................................................................................................................................18140.0710000000010
...................................................................................................................................................................................................................................................................................................TCAAA----AT-GAGTATTGGGGTATATTC..................................................................................................................................................................................25140.0710100000000
.............................................................................................................................................................................................................................................................................................................T-GAGTATTGGGGTATATTCGATT..............................................................................................................................................................................23150.0710100000000
...................................................................................................................................................................................................................................................................................................................................TTTTTGGTAAAAGTGGATGTGTA.........................................................................................................................................................23170.0610010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCCATGTCTGTC..............................................................21200.0511000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCATGTCTGTCTGTCCGT.......................................................23200.0510010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGAT.............................................................................21200.0510010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCG...............................................................................25200.0510000010000
........................................................................................................................................................................................................................................................................................................................................................................................A------------------TTGATCAGCATCAATAGCC.....................................................................................20200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................A------------------TTGATCAGCATCAATAGCCGA...................................................................................22200.0510100000000
............................................................................................................................................................................................................................................................................................CCGATACTCAAA----AT-GAGTATTGGGG.........................................................................................................................................................................................25200.0510100000000
...................................................................................................................................................................................................................................................................................TTATTATACCCGATACTCAAA----AT-G...................................................................................................................................................................................................24200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCTGTCTGTCCGTCT.....................................................20200.0510000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCA......................................................................18200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................A------------------TTGATCAGCATCAATAGCCGAGTC................................................................................25200.0510100000000
.............................................................................................................................................................................................................................................................................................CGATACTCAAA----AT-GAGTATTGG...........................................................................................................................................................................................22200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCCATGTCTGTCTG............................................................23200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------CTATTAGCGCCTAGTGCTCA-------..21200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTC..................................................................................................................................20200.0510000000010
.........................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGT.....................................................................................................................................21200.0510010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCATGTCTGTC..............................................................20200.0510000100000
...................................................................................................................................................................................................................................................................................................TCAAA----AT-GAGTATTGGGGTAT......................................................................................................................................................................................21200.0510000000100
...............................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGA...............................................................................................................................21200.0510000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCC--------CTATTAGCGCCTAGTGCT...........22200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATTGAGCCATGTCTG................................................................20200.0511000000000
....................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACC.............................................................................................................................18200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGCCAT.....................................................................24200.0510100000000
droPer2
CTGCT-------------------------------------------GTTAGTTAAAAAATA------------------------TTTAATTCTTTTAAGCTTTTAAGCT----------------------------------------------------------------------------------------ATT---T----------------------------------------------------------------GTATTTATTATACCCGATACTCAAA----AT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCA--TAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCCGTCTGTCCGTCC--------CTATTAGCGCCTAGTGCTCAA-----AGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGC........................................................................20201.20240000024
........................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGC........................................................................19200.50100000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCCATGTCTGTCTGTCC.........................................................21200.459090000
......................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTGT........................................................................................................................................................21200.255050000
....................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGT........................................................................................................................................................23200.153000003
................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTAAAAGTGGA...............................................................................................................................................................20200.102020000
....................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCA--TAA.....................................................................................................................24200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCC--------CTATTAGCGCCTA................20200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTC......................................................18200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGA..........................................................................21200.051000010
.....................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGGAAT........................................................................................................................................22200.051000001
........................................................................................................................................................................................................................................................................................................................................GGTAAAAGTGGATGTGTGTA.......................................................................................................................................................20200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCC--------CTATTAGCG....................19200.051000100
....................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCGA...................................................................................28200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCATGTCTG................................................................18200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGTCTGTCCGTCC--------CTATTAGCGCC..................28200.051010000
...................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCC...........................................................................................................................21200.051000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGTCTGTCCGTCCG....................................................19200.051010000
droAna3
TTTAT--ATTAAATG---------------------------------------------CTATGACTTAGCA-------------------------AAAACT----------------------TG------TAAAGATA---------CAG----------------------------------------------------------------A-------------------------------------------------TCGGAAATTTTTGTAACCGGTACACGTA-------GAATACAAGGGTATGTTGACTTCGTGTGAA-------TGTATTTAACAGGGAGAAGGAATCGTCTCCGAGCCCA--TAAAGTACATATATTA-AGATCAGCCTCACCAGCCGAGTTGATATAACCATGTCCGTCTGTCT----------------------------GTATGAACATGTGGAGCTCAA-----AGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GGTGA-------CATTTC---------------------------TCACCTTACTTATCAATG------------------------TCTATTCC---------------------------------------TATATTTT---------CAG---------TAAAG-----------------------AAAAC--------------------------------------------------C------------------------TTTTTTTTTAAACCAGGTACTCCTA-------GAGTACAAGGGTATATTGTAGTCGTGTGAA---TGTATGTATGTAACATAGAGAAGAAACGATCT------CCA--TTTAATATAAATATTCTTGATCAGCATCAACAGCCGAGTCGATAGAGCTTTGGCCGTCCGTCCGTC--------TTTA----C--------GTACGAACGT------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TATAT-------GTTT----------------------------TCCTTGTTGG----------------------------CGTGT-ATGAA-----GGAACT----------------------TCCAA---------------------------------------------------GCAAAGTTGC-----------------GCGATAGATT---------------------------TTTT---------------------GAAATTTTTATACCCTT--------------------GCAGGGTTTTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTA--TAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCTGTCC--------GTTTCTACGC------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
ATTTC------------------------------------------TATATATGTAGATTTT------------------------TCGATTTTTCTATAGCTAGA--------------T----GA------TATTACATAGG--------------------TGTCT-----------------------GAT------GTCTTT-----------------------------------------------------TATG------ACATTTTTTATACCCC----TTGCA-------GAGCAAAAGGATATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTTAGACCCCA--TAAAGTATATATATTCTTGATCAGCATCACCATCTGAGTCGAACTATGTATGTACGTCTGTCCGTCTGTCCGTCGGTC----C--------GT---------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGTGA-------CAAC-CTAATAAATATCTTTA----------------------ACCAGCTC------------------------TGCTTTTCTCTACACCTAAC---TC---CTTTATT-----C-----------------------------------------TAATAT-----------------------------TTTT---------TTATAAATTTAAAAACATAAGTAG--------------------ATTTAAATCAATCATATTTATACCCTT-----GCA-------------GAGGGTATTATAATTTCAGTCAG-------------------------------------------------AAATATATATATTCTTGATCAGCATCACTAGGAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGT--------T----T--------CTACGCAAACAAGTCCCTCAGGTTTAAAGSizeHit CountTotal NormTotal
No Reads
droRho1
GATGA-------GTAC----------------------------AACTGTTTGGCAAA--A-----------------TTGCTTT----------------A------------------TT----TG------TAAATATT---------TGG---------------------------------------------------------------TTAA--------------------A-----------------------------TACATATTTATACCCGTTACTCGTA-------GAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGGTAAAAGGAAGCGTTTCCGACCCTA--TAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCTGTCCGT----CTGTCTGTCTGTC----C--------GTATGAACGCTGAGATCTCGG-----AAASizeHit CountTotal NormTotal
No Reads
droBia1
GTGAA-------AAA---------------------------------------------CTTAAACTTTTCACAAATTTGTCGTAT------------------------------------------------------------------------------AAG-----------------------AAAG-AGCTT--------------TATT----------------------------------------------------TATTTTTTCATACCCGTTACTCGTA-------GAGTAAAAGGGTATACTAGATTCGTCGGAA-------AGTATG-AACAGGCTAAAGGAAGCGTTTCC----CCA--TAAAGTATAAATATTCTTGATCAGGATCACAAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTATGTCCGTCCGTC----C--------GTATGAAATCAGAGATCTCGG-----AAASizeHit CountTotal NormTotal
No Reads
droTak1
AGTGG-------GCAT----------------------------TACTTTATCTGCAAAAGTA-------------------------------------------------------------------------------TATAAGCTTCGGCTGGCCGAA-----------------------G----GT---AGCTT--------------CC------------------------------------------------------TTTCTTGTTATACCCGTTACTCGTA-------GAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAAAAGCTGGAAGGAAGCGTTTCCGACCCCA--TAAAGTATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGCCTGTCCGTCTGTCTGTCTGTCTGTCC--------GTATGAACGCTGAGATCTCGG-----AAASizeHit CountTotal NormTotal
No Reads
droEug1
GTAGG-------GCTC-AT-------------------------CACAACAAGTATAAAACTT------------------------TTCATTCCTGCAAAACATTA------------ATAGTGAAT------TATTAAAAAAG--------------------TAT---------------------------------------------------------TTATAAACATAACACA--------------------AATT------GAATTTTTTATATCTCTTACAAATA-------GATCTAAAGGAAATATTGTATTCGATGAAA-------AGTATTTAACAGCCATAATGAAGCATTTCCGACTCTA----------------------------TTAATAACCGAGTTAATTTAGCCATGTCCGTCTGTCTGTC--------TGTC----C--------GTATGAACGCTAAGCTCTCAG-----CAASizeHit CountTotal NormTotal
No Reads
dm3
AATGC--C----GCAC----------------------------TGCTTAATGGGTCAAGCAG------------------------TGCGCT----------------------------------------------------------------------GATAT-----------------------CTAACA------GCTCGCG--ACAAA--AG--------------------ATAAGCTTTCAGT--CTCTT------------------TATACCCGTTACTCGTA-------ATTTAAAAGGGTATACTAGACTTCTTAA------------------------GATGAAAACGTTTCCGACCATAGACCTAGTATATATACTCTTGATCAGGATCAATAGCCGTATCGATCTGGCCCTACCCGTCTGTTTTT-------TCCGTT----C--------GTACGAACGTCGAGATCTCCG-----AAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGT...................................................................................21106.70670000000000000000000000100000000000000010000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000404110108900000000100110900000000000000000000000000000000000105001000000003000000000001010001000000000000000000000000000000000000000000000000000000000000000000000100000000303000000000000000020100000
........................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGATCAGGATCAATAGC......................................................................................2141.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGTATCG...............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGTCGAGATCTCCG-----AA.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CTAACA------GCTCGCG--ACAAA--AG--------------------AT................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGTATCGATC............................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGTATCGATC............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TCAAGCAG------------------------TGCGCT----------------------------------------------------------------------GATAT-----------------------CT..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGTATCGA..............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCG....................................................................................21200.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000150000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGT...................................................................................2390.5650000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTTGATCAGGATCAATAGCC.....................................................................................2520.5010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGTAT.................................................................................1920.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCTTGATCAGGATCAATAGCC.....................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TATACTCTTGATCAGGATCAA..........................................................................................2150.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................TATATACTCTTGATCAGGAT.............................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGT...................................................................................20110.2730000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGATCAGGATCAATAGCC.....................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGT...................................................................................2290.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------GTACGAACGTCGAGATCTC..........2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAACGTCGAGATCT...........1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ACTCTTGATCAGGATCAATAG.......................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGTC..................................................................................22140.1420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGTT..................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCC.....................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TACTCTTGATCAGGATCAATAT.......................................................................................22130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCG....................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCG....................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGC......................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTCCA-------AAA---------------------------------------------CTA-AAC--------------------------TGCATACACTATTTAAAGAAGT-----------TG-----------------------------------------TAATAT------------------------------------------------------------------------------------------------TTTTTAATAATACCCGCTACTCGTA-------GAGTAAAAGTATATACTAGTTTCGTTGAAA-------AGTATGTACCAGGCAGATGGCAGCGTTTTCGACTATA--TAAAGTATATATATTCTTGAT-AGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGCCCGACTGTCCGTCTGTC----C--------GTATGAACGTCGAGATTACAG-----GAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTC----C--------GTATGAACGTCGA................262015.95319002060005605700000000
..................................................................................................................................................................................................................................................................................................................TAAAAGTATATACTAGTTTCGTTGAA.......................................................................................................................................................................2615.00500000022100000000
.................................................................................................................................................................................................................................................................................TTTAATAATACCCGCTACTCGTA-------GAGT................................................................................................................................................................................................2713.00300000001200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTC..............................................................24202.9058000000010055020000
........................................................................................................................................................................................................................................................................................................................................TGAAA-------AGTATGTACCAGGCAGATGGC..........................................................................................................................................2612.00200000001001000000
...........................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGAT-AGGA..............................................................................................2512.00200000000200000000
..................................................................................................................................................................................................................................................................................TTAATAATACCCGCTACTCGTA-------GAG.................................................................................................................................................................................................2512.00200000000110000000
.......................................................................................................................................................................................................................................................................................................A-------GAGTAAAAGTATATAC....................................................................................................................................................................................1712.00200000000002000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGATGGCAG........................................................................................................................................2612.00200000000002000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGATGGCA.........................................................................................................................................2512.00200000000001001000
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTACCAGGC.................................................................................................................................................2422.00400000000220000000
...CA-------AAA---------------------------------------------CTA-AAC--------------------------TGCATACACTATT.........................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTC----C--------GTATGAACGTCGG................26201.3527002700000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGGATCAATAGCCGAGTCGATC............................................................................23121.331600000084301000000
...................................................................................................................................................................................................................................................................................TAATAATACCCGCTACTCGTA-------GAG.................................................................................................................................................................................................2411.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTACCA....................................................................................................................................................2131.00300003000000000000
.........................................................................................................................................................................................................................................................................................TACCCGCTACTCGTA-------GAGTAAAAGTA.........................................................................................................................................................................................2611.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGGATCAATAGCCGAGTCGATCT...........................................................................2471.00700000031210000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGCCCGACTGTCCGTCTG............................................2611.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTC----C--------GTATGAACGTCGAGATTACAG-----G..2911.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTC----C--------GTATGAACGTCGAGATTACAG-----GA.2811.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGAT.............................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................GTATATACTAGTTTCGTTGAAA-------AG.............................................................................................................................................................2411.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTC----C--------GTATGAACGTCGAGATTA...........2511.00100000000000010000
......................................................................................................................................................................................................................................................................................................................AGTATATACTAGTTTCGTTGAAA-------AGTA...........................................................................................................................................................2711.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----C--------GTATGAACGTCGAGATTACAG-----GAA2711.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTACCAGGCAGA..............................................................................................................................................2721.00200000010000010000
.....................................................................................................................................................................................................................................................................................................................................................................TGGCAGCGTTTTCGACTATA--TAAAGTATA...............................................................................................................2911.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................TGGCAGCGTTTTCGACTATA--TAAAGTA.................................................................................................................2711.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGATGG...........................................................................................................................................2311.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGCCCGA.......................................................2811.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGCCCGACTGTC..................................................2811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................TTGAAA-------AGTATGTACCAGGCAGATGGC..........................................................................................................................................2711.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAGTATATATATTCTTGAT-AGGAT.............................................................................................2411.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----C--------GTATGAACGTCGAGATTACAG-----G..2511.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGATGGC..........................................................................................................................................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----C--------GTATGAACGTCGAGATTACAG-----GAA2611.00100000000000001000
......................................................................................................TATTTAAAGAAGT-----------TG-----------------------------------------TAATAT------------------------------------------------------------------------------------------------TTTT................................................................................................................................................................................................................................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGATGGT..........................................................................................................................................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................TGAAA-------AGTATGTACCAGGCAGATGGCA.........................................................................................................................................2711.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----C--------GTATGAACGTCGAGATTACAG-----GA.2611.00100000000000010000
..................................................................................................................................................................................................................................................................................................................TAAAAGTATATACTAGTTTCGTTGAAA-------...............................................................................................................................................................2711.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGATGGCAC........................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................................................................................................................................................TA-------GAGTAAAAGTATATACTAGTTTCGTT..........................................................................................................................................................................2811.00100000000010000000
.................................................................................................................................................................................................................................................................................TTTAATAATACCCGCTACTCGTA-------G...................................................................................................................................................................................................2411.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAGA..............................................................................................................................................2021.00200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGGATCAATAGCCGAGTC................................................................................19150.9314000001400000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTGC...........................................................2750.80400010000003000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTC----C--------GTATGAACGTCGAGATTAA..........2430.67200000000000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGTC..................................................................27200.6513000000000013000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGGATCAATAGCCGAGTCGAT.............................................................................22130.62800000030410000000
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTACCAGGCAG...............................................................................................................................................2620.50100000001000000000
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTACCAGGCA................................................................................................................................................2520.50100000001000000000
..........................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTACCAGGCAG...............................................................................................................................................1920.50100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCA......................................................................23200.40800000001007000000
......................................................................................................................................................................................................................................................................................................TA-------GAGTAAAAGTATA.......................................................................................................................................................................................1530.33100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTC----C--------GTATGAACGTCGAGATT............2530.33100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTC----C--------GTATGAACGTCGAGATT............2730.33100000000001000000
...........................................................................................................................................................................................................................................................................................................................ATACTAGTTTCGTTGAAA-------A..............................................................................................................................................................1930.33100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTC----C--------GTATGAACGTCGAGATT............2830.33100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGGATCAATAGCCGAGTCGATCTA..........................................................................2530.33100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTC----C--------GTATGAACGTCGAGA..............28200.30600000005001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGT...................................................................26200.30600050000010000000
................................................................................................................................................................................................................................................................................................................................AGTTTCGTTGAAA-------AGTA...........................................................................................................................................................1740.25100000000001000000
..........................................................................................................................................................................................................................................................................................................................TATACTAGTTTCGTTG.........................................................................................................................................................................1640.25100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTC..............................................................26200.25500000013010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTAGCCATGTC..................................................................25200.25500000000122000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCT.............................................................25200.20400000000000040000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTC----C--------GTATGAACGTCGAGATT............2450.20100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGCC..........................................................2050.20100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCCGTCTGTC----C--------GTATGAACGTC..................26100.20200000000200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCCGTCTGTC----C--------GTATGAACGA...................25110.18200200000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGC...........................................................1960.17100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCCGTCTGTC----C--------GTATGA.......................21120.17200000020000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGC...........................................................2460.17100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGC...........................................................2060.17100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCG................................................................24200.15300000003000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTC----C--------GTATGAACGTC..................17200.15300000000003000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T-AGGATCAATAGCCGAGTCGATCTT..........................................................................2570.14100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTC----C--------GTATGAACGTCGAGATT............2270.14100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGAT-A.................................................................................................18140.14200000002000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTC----C--------GTATGAAC.....................21200.10200000000200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCA......................................................................24200.10200000000020000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCCGTCTGTC----C--------GTATGAACGTCGA................28100.10100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTT..............................................................26200.10200000000001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTC----C--------GTATGAACGTCGAGA..............23200.10200000020000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCC.................................................................24200.10200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTC----C--------GTATGAACG....................22200.10200000000020000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGTCC.................................................................28200.10200020000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCT.............................................................20200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTCC.................................................................23200.10200000002000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCG................................................................26200.10200010001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCTGTC----C--------GTATG........................19200.10202000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC----C--------GTATGAACGTCGAGATT............21110.09100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCCGTCTGTC----C--------GTATGAAC.....................23120.08100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----C--------GTATGAACGTCGAGATT............20130.08100000000001000000
............................................................................................................................................................................................................................................................................................CCGCTACTCGTA-------GAGT................................................................................................................................................................................................16130.08100000001000000000
...............................................................................................................................................................................................................................................................................................CTACTCGTA-------GAGTAAA.............................................................................................................................................................................................16140.07100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCTGTC----C--------GTATGAACGTCGA................27150.07100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTC----C--------GTATGAACGTCGAGA..............22200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCT.............................................................19200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCTGTC----C--------GTATGAACG....................23200.05100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATG....................................................................25200.05100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTC----C--------GTATGAACGTCGA................24200.05100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCCGAGTCGATCTAGC........................................................................24200.05100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATCTAGCCA......................................................................25200.05100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCC.................................................................25200.05100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGAT.............................................................................16200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCGTC..............................................................25200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCGTCT.............................................................26200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGT...................................................................21200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT.....................................................................21200.05100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCGTCTG............................................................27200.05100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGC........................................................................21200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTA.......................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCCGAGTCGATCTAGCCAA.....................................................................27200.05100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCAT.....................................................................23200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCTGTC----C--------GTATGAAC.....................22200.05100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGT...............................................................23200.05100000001000000000
droSec2
GAATGCTT----GCAC----------------------------AACAGTATGCTTTAAACAA------------------------TGCACTTCGGCGATGTTCTTAAAAAATT-----------TGCAATCCCA---------------CAG----------------------------------TTTC-----------------GAAATAAAAT---------------------------T------------------------TTTATAATTATACCCATCACTTGTA-------GAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCGGAAGACAGCGTTTCCGACTATA--CAAAGTATATATATTCTTGATCAGGATC--------------------------------------TGTCTGTCCGTC----C--------GTATGAACGCCGATATCTCGG-----AAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGG..................................................................................................................................................23201.402828000
...............................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGAT.............................................................................................23200.4087010
....................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAGGC.................................................................................................................................................23200.1533000
.............................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGAAA-------AGTAT..........................................................................................................................................................21200.1020200
....................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGT...........................................................................................................................................................................20200.0510100
..........................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAAA-------AG.............................................................................................................................................................21200.0510001
.......................................................................................................................................................................................................................................................................................................A-------GAGTAAAAGGGTATACTAGA................................................................................................................................................................................21200.0511000
..................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTGAA.......................................................................................................................................................................26200.0511000
.....................................................................................................................................................................................................................................................................................................................................CGTTGAAA-------AGTATGTAACAGG..................................................................................................................................................21200.0511000
............................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAAA-------AGT............................................................................................................................................................20200.0510001
...................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGA........................................................................................................................................................................24200.0511000
......................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAA-------AGTA...........................................................................................................................................................27200.0511000
................................................................................................................................................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTT..........................................................................................................................................................................25200.0511000
.......................................................................................................................................................................................................................................................................................................A-------GAGTAAAAGGGTATACTAGATTCGT...........................................................................................................................................................................26200.0510100
...........................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAAA-------AG.............................................................................................................................................................20200.0510100
droYak3
TATAG-------GGT----------------------------------TATGAGCGATATTG------------------------GACGTA-------------------------------------------------TGAAAACTGCATTTGAGGAAA---------------------------------AA--A----------------CT---------------------------ATTTCGTTCGATAGT------------------TATACCCGTTACTCGTA-------GAGTAAAAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATA--TAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTC----C--------GTATGAACGTCGAGATCTCAG-----GAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................TCGTA-------GAGTAAAAGGGTATACT...................................................................................................................................................................................22202.1042004200000000
................................................................................................................................................................................................................................................................................................TACTCGTA-------GAGTAAAAGGGTATACT...................................................................................................................................................................................25202.0541004100000000
....................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGCC.....................................................................................26201.5030003000000000
........................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTT....................................................................................................................................23200.9519019000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGT.................................................................................26200.6513000000000013
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGC.................................................................................................................................................24200.35707000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCTGTCCGTC----C--------GTATG........................26200.20404000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTC----C--------GTATGAACGTCG.................27200.20404000000000
...........................................................................................TA-------------------------------------------------TGAAAACTGCATTTGAGGAAA---------------------------------AA--A----------------C.........................................................................................................................................................................................................................................................................................27200.20400400000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGT...................................................................20200.15303000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGCCATGTCCGTCTGTC..........................................................24200.15300300000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCCGTC......................................................19200.15330000000000
.................................................TATGAGCGATATTG------------------------GACGTA-------------------------------------------------TGAAAAC..............................................................................................................................................................................................................................................................................................................................................................27140.14202000000000
...........................................................ATTG------------------------GACGTA-------------------------------------------------TGAAAACTGCATT........................................................................................................................................................................................................................................................................................................................................................23200.10202000000000
.............................................................TG------------------------GACGTA-------------------------------------------------TGAAAACTGCATTTGAGG...................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
..........................................................TATTG------------------------GACGTA-------------------------------------------------TGAAAACTGCATT........................................................................................................................................................................................................................................................................................................................................................24200.10201100000000
.....................................................................................................................................................TGCATTTGAGGAAA---------------------------------AA--A----------------CT---------------------------ATTTCG.......................................................................................................................................................................................................................................................25200.10202000000000
..............................................................................................................................................TGAAAACTGCATTTGAGGAAA---------------------------------AA--A----------------C.........................................................................................................................................................................................................................................................................................25200.10201100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATG....................................................................20200.10202000000000
............................................................TTG------------------------GACGTA-------------------------------------------------TGAAAACTGCATTTGAGG...................................................................................................................................................................................................................................................................................................................................................27200.10201100000000
............................................................................................................................................................GAGGAAA---------------------------------AA--A----------------CT---------------------------ATTTCGTTCGATAGT------------------............................................................................................................................................................................................................................27130.08101000000000
....G-------GGT----------------------------------TATGAGCGATATTG------------------------GACGTA-------------------------------------------------TG...................................................................................................................................................................................................................................................................................................................................................................26140.07101000000000
...................................................TGAGCGATATTG------------------------GACGTA-------------------------------------------------TGAAAAC..............................................................................................................................................................................................................................................................................................................................................................25140.07101000000000
..................................................ATGAGCGATATTG------------------------GACGTA-------------------------------------------------TGAAAACT.............................................................................................................................................................................................................................................................................................................................................................27140.07110000000000
.......................................................CGATATTG------------------------GACGTA-------------------------------------------------TGAAAACTGCATT........................................................................................................................................................................................................................................................................................................................................................27150.07101000000000
.......................................................CGATATTG------------------------GACGTA-------------------------------------------------TGAAAACTGCA..........................................................................................................................................................................................................................................................................................................................................................25160.06101000000000
.....................................................AGCGATATTG------------------------GACGTA-------------------------------------------------TGAAAACTG............................................................................................................................................................................................................................................................................................................................................................25160.06100000000001
.............................................................TG------------------------GACGTA-------------------------------------------------TGAAAACTGCATTTGAG....................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTC..................................................................20200.05100100000000
...................................................................................................................................................................................................................................................................................................TCGTA-------GAGTAAAAGGGTATAC....................................................................................................................................................................................21200.05100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGGCCATGTCCGTCTGTCC.........................................................23200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCCGTCCGTC..................................................23200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATGTCCGTC..............................................................26200.05100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTC----C--------GTATGAACGTCGAGA..............23200.05100000010000
...................................................................................................................................................ACTGCATTTGAGGAAA---------------------------------AA--A----------------CT---------------------------ATTTCG.......................................................................................................................................................................................................................................................27200.05101000000000
...........................................................................................TA-------------------------------------------------TGAAAACTGCATTTGAGGAAA---------------------------------AA--A----------------T.........................................................................................................................................................................................................................................................................................27200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGCCATGTCCGTCTGTC..........................................................21200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCTGTCCGTC----C--------GTATGA.......................27200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCC.....................................................................................20200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCGTTTCCGACCATA--T.......................................................................................................................24200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTGGCCATG....................................................................24200.05101000000000
.............................................................TG------------------------GACGTA-------------------------------------------------TGAAAACTGCATTTGAGGAA.................................................................................................................................................................................................................................................................................................................................................28200.05101000000000
.....................................................................................................................................................TGCATTTGAGGAAA---------------------------------AA--A----------------CT---------------------------ATTTCGT......................................................................................................................................................................................................................................................26200.05101000000000
..........................................................TATTG------------------------GACGTA-------------------------------------------------TGAAAACTGC...........................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTGGCCATGT...................................................................24200.05101000000000
droEre2
ACTAA-------A-----------------------------------ATATATGAAAAATTT--------------------------------------------CCAACAGC---------------------------------------------------------------------------------AGCA-------------TTGTCT---------------------------TTTTCATATCCTTTT------------------TATTCCCGTTACTCGTA-------GAGTAAGAGGGTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGTTTTCGA---TA--TAAAGTACATATATTCTTGATCAGGATCAATAGCCGACTCGAACAGGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTC----C--------GTGTGAACTCCTCGATCTCAG-----GAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAGGCAGA..............................................................................................................................................27200.1530000003
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCCGTCCGTC----......................................20120.0810000010
......................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAG........................................................................................................................................21200.0510000001
.......................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAAA-------AGT............................................................................................................................................................25200.0510100000
...........................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAAA-------...............................................................................................................................................................18200.0510000010
.........................................................................................................................................................................................................................................................................................................................................GAAA-------AGTATGTAACAGGCAGA..............................................................................................................................................21200.0510000100

Generated: 05/16/2015 at 09:10 PM