dvi_12733

exon [dvir_GLEANR_3891:2]; exon [dvir_GLEANR_3891:1]; CDS [Dvir\GJ19067-cds]; CDS [Dvir\GJ19067-cds]; intron [Dvir\GJ19067-in]

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAGCCGGCGGCCAACAACAAGGAGGCTCTTAGCATCAGGAAGCTGTACAAGTAGGTGGTGCCATCCCATAGATGCCATTAGTACGGGCACACAGCCACGTACTGCAGAAAACAATACAAAAGCGTAAACAGCAAACATCTGAAAACGGGGAAGGACTCTCCTTTGCCATCAAGGACATGAACCGAGCTCCTTTACCTTTTGACCGCGCAGCAATGCGCGCGGCCTTCAACTAGATAACAGCCTAGCGCATCGTCAAGCAA ************************************************....(((((..((((.....))))....((((((((((.....))).)))))))............((((((.(((((.(((...(((((......((.((((((...)))))).)).....)))..))......)))..))))))))))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060677 Argx9_ovaries_total	SRR060663 160_0-2h_embryos_total	V047 embryo	V116 male body	M047 female body	SRR060679 140x9_testes_total	M027 male body	SRR060686 Argx9_0-2h_embryos_total
...............................................................................................................CAATACAAAAGCGTAAACAGCAAACA...........................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTGACCGCGTAGCAATGAACG.........................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0
................................................................................GTTCGGGCCCACAGCCACG.................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0	0
..............................................................................................................................................AAAAGGGGAAGGGGTCTCCT..................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................CGACGACATGAACCGAGCGC.......................................................................	20	3	6	0.17	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................AGCTTCTTTACTTCTTGACC........................................................	20	3	9	0.11	1	0	0	0	0	0	1	0	0
.............................................................................................................................................AAAACTGGCAAGGACTCT.....................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	1	0
........CGCCAACAACAAGGAGGA..........................................................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12970:721147-721406 -	dvi_12733	AAGCCGGCGGCCAACAACAAGGAGGCTCTTAGCATCAGGAAGCTGTACAAGTAGGT------------------------------------GGTGCCATCCCATAGATGCCATTAGTACGGGCACACAGCCACGTACTGCAGAAAACAATACAAAAGCGTAAACA------GCAAACATCTGAAAACGGGGAAGGACTCTCCTTTGCCATCAAGGACATGAACCGAGCTCCTTTACCTTTTGACCGCGCAGCAATGCGCGCGGCCTTCAACTAGATAACAGCCTAGCGCATCGTCAAGCAA
droMoj3	scaffold_6482:1837938-1838011 +		GCA------------------------------------------------------------------------------------------GTGCAATGCCATAGATGTCAGCAGTTCGGCCATACGGCTAAGTACTGTCGTAAGACGCACATATGCGTGAA------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004936:1424702-1424865 +		GCTATTGCTCCTAATAACAAGGAAGTTTTTGACATATCAACCATCTGCAGAGTGAGTGTTGAAATTGAACATATGAGAAAACGTTCAGAAGTGACCCATTGTTCGAAAAGCCAAGATTATGGGCATACAGCCGGTTACTGCGGGATGAAGTTTAGATGTATGAA------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_2:82734-82851 -		AGACCCTCTGCCGCCAAAAAATAA-------------------------------------GGATTGTAAGGATGCGAAAATCTACAGGGATTGCAGAATGCCGGCGATGCCAGGATTACGGCCACACAGCTAAATACTGCCGACGACATCCCA---------A------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_1087:4502-4619 +		AGACCCTTTGCCGC-------------------------------------CAAAAAATAAGGATTGAAAGGATGCGAAAATCCACAGAGATTGCTCAATGTCGTCGATGCCAGGATTTCGGCCACACAGCCAAATACTGCCGCAGACATCACAA---------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13089:855908-856071 +		GAGCCAGCCGAAAACAACAAGGAGGCCTTTCAAGTCAAGCGGCTATGCAGCACGGTGGTTACGGTCGAGCCACCAAAAAAATTCGACGATGTGCCCCAATGCCATCGTTGCCAGGGCTTCGGTCACACGAAGCGGTACTGCCATCTGGAGTACAGATGCGTAAA------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000394450:8866-8924 +		GAGCCAGCCAAAAACAACAAGGAGGCCTTTAAAGTCAAGCGGCTATGCAGCACGGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302697:98503-98631 -		GAACCAGCCGCCAACAACAAAGAAATACATGAGCTTAAAACGCTTTGTCGTCAACGGATACAAGTTGAGCTTCCTTTCAAAAAGGACGTTGTCGTGCAATGCTATCGGTGCCAATCTTACAATCACACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000451962:75-238 +		GAGCCAGCATCTAACAACAAGGAAGCTTTTAACATCAAGAGGCTCTGCAGATCGGTTGTGACGGTGGAACCGCCCCATAAATTTGACGACATACCCCAATGCTATAGATGCCAAGGCTACGGACACAGCCAGCGATACTGCAGACTGCAAGCTAGGTGTGTAAA------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777187:2647-2679 +		------------------------------------------------------------------------------------------------------------TGCCAAGAATATGGACATACAGCCAAGTACTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302429:79721-79743 +		GAAAAGAATCTAAATAACAAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000413609:971-1038 -		GAGCCGGCTAACAACAACAAAGAGGCCTACCAGGTTAAGCGTCTCTGCAGCTCAGTGGTGACC------------------------------------------------------------------------------------------------ATAGA------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000408094:10404-10443 -		AAGCCGGCGGCAAACAATAAAGA---------------------------------------------------------------------------ATGCCACCAGTGTCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2L:20977784-20977998 +		GCTGCTGCGGCAAACAATAAGGAGATCCTGGCGGTAAAGGCACTATGCCATATGAGAGTAGTTATTGAGCCTCTCCGCAAGCGTAACGCTATTGTCCAGTGCCATCGTTGTCAGCAGTTTGGCCACACAGCCAAATACTGCCGTAAGGCCCACATTTGTGTGAAATGTGCCGGCGAACAC------CCAGCCAAGGACTGTA---------CCAGGCCACGCATCGAGCT------------------------------------------------------------------------
droSim2	3l:23961042-23961222 +		GCTGCTGCGACAAACAATAAGGAGATCCTGGCGGTAAATGCACTATGTCGTATGAGAGTACTTATTGAGCCTTTCCGCAAGCGTAACGCTATTGTCCAGTGCCATCGTTGTCAGCAGTTTGGCCACACAGCCAAATACTGCCGTAAGGCCCACATTTGTGTGAAATGTGCCGGCGAACACC-------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_122:45287-45484 -		GCTGCTGCGGCAAACAATAAGGAGATCCAGGCGGTAAAGGC------------------ACTTATTGAGCCACTCCGCAAGCGTAATGCTATTGTCCAGTGCCATCGTTGTCAGCAGTTTGGCCACACAGCCAAATACTGCCGTAAGGCCCACATTTGTGTGAAATGTGCTGGCGAACAAC-----CCAGCCAAGGACTGTA---------CTAGGCCACGCATCGAGCT------------------------------------------------------------------------
droYak3	v2_chrUn_3973:15102-15241 +		GCCGCTGCGGCCAATAACAAGGAAATTCTG------------------------AGAGTGGTAATAGAGCCACTTCGCAAGCGCACTGCCATCGTGCAATGTCACCGATGCCAGCAGTTTGGTCACACGGCTAAATACTGCCGTAAAGCTTACATATGTGTGAA------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4769:4962-5108 +		GAGCCTTCAAGCAACAAGAAAAAGGCTCT-----------------GCCACGCTGTGGTCTCCACCGAGGAGCCCAGAAAGTTCAATGACCTGGTGCAGTGCTACCGCTGCCAGGCTTTCGGGCATACCAAGAGGTACTGCAGACTGCAGTACACTTCCGTAAA------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AAGCCGGCGGCCAACAACAAGGAGGCTCTTAGCATCAGGAAGCTGTACAAGTAGGT------------------------------------GGTGCCATCCCATAGATGCCATTAGTACGGGCACACAGCCACGTACTGCAGAAAACAATACAAAAGCGTAAACA------GCAAACATCTGAAAACGGGGAAGGACTCTCCTTTGCCATCAAGGACATGAACCGAGCTCCTTTACCTTTTGACCGCGCAGCAATGCGCGCGGCCTTCAACTAGATAACAGCCTAGCGCATCGTCAAGCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................CAATACAAAAGCGTAAACA------GCAAACA...........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCA------------------------------------------------------------------------------------------GTGCAATGCCATAGATGTCAGCAGTTCGGCCATACGGCTAAGTACTGTCGTAAGACGCACATATGCGTGAA------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................TAGATGTCAGCAGTTCGGCCATA...............................................................................................................................................................................	23	1	3.00	3	2	0	0	0	1	0
........................................................................................................TAGATGTCAGCAGTTCGGCCATACGGC...........................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
........................................................................................................TAGATGTCAGCAGTTCGGCCATAC..............................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
........................................................................................................TAGATGTCAGCAGTTCGGCCATACGG............................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
........................................................................................................TAGATGTCAGCAGTTCGGCCA.................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
........................................................................................................TAGATGTCAGCAGTTCGGCCATACG.............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................TACTGTCGTAAGACGCACATATGC...............................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................CAGCAGTTCGGCCATACGGCTAAGTAC....................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................TCAGCAGTTCGGCCATACGGCTAAG.......................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droWil2

GCTATTGCTCCTAATAACAAGGAAGTTTTTGACATATCAACCATCTGCAGAGTGAGTGTTGAAATTGAACATATGAGAAAACGTTCAGAAGTGACCCATTGTTCGAAAAGCCAAGATTATGGGCATACAGCCGGTTACTGCGGGATGAAGTTTAGATGTATGAA------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................CTGCGGGATGAAGTTTAGAT.................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........TAATAACAAGGAAGTTTTTGACATATCA.......................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0

dp5

AGACCCTCTGCCGCCAAAAAATAA-------------------------------------GGATTGTAAGGATGCGAAAATCTACAGGGATTGCAGAATGCCGGCGATGCCAGGATTACGGCCACACAGCTAAATACTGCCGACGACATCCCA---------A------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................AATAA-------------------------------------GGATTGTAAGGATGCGA................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGACCCTTTGCCGC-------------------------------------CAAAAAATAAGGATTGAAAGGATGCGAAAATCCACAGAGATTGCTCAATGTCGTCGATGCCAGGATTTCGGCCACACAGCCAAATACTGCCGCAGACATCACAA---------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................TAAGGATTGAAAGGATGCGAAAATCC..........................................................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0
...........................................................AAGGATTGAAAGGATGCGAAAATCCAC........................................................................................................................................................................................................................	27	11	0.09	1	0	1	0	0	0	0
..........................................................................................ATTGCTCAATGTCGTCGATGCC..............................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0
........TGCCGC-------------------------------------CAAAAAATAAGGATTT...........................................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0
.................................................................................TCCACAGAGATTGCTCAAT..........................................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0
........................................................................................AGATTGCTCAATGTCGTCGATGCC..............................................................................................................................................................................................	24	12	0.08	1	1	0	0	0	0	0
.................................................................................TCCACAGAGATTGCTCAATG.........................................................................................................................................................................................................	20	12	0.08	1	0	1	0	0	0	0
...................................................................................CACAGAGATTGCTCAATGTCGTCGGCC................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0
...............................................................................AATCCACAGAGATTGCTCAATGT........................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0
.................................................................................TCCACAGAGATTGCTCAATGTCGTCGA..................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0	0

droAna3

GAGCCAGCCGAAAACAACAAGGAGGCCTTTCAAGTCAAGCGGCTATGCAGCACGGTGGTTACGGTCGAGCCACCAAAAAAATTCGACGATGTGCCCCAATGCCATCGTTGCCAGGGCTTCGGTCACACGAAGCGGTACTGCCATCTGGAGTACAGATGCGTAAA------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................TTTCAAGTCAAGCGGCTATGCAGC...........................................................................................................................................................................................................................................................	24	7	1.29	9	6	3	0	0	0	0
......................................................................................CGATGTGCCCCAATGCCATCGTTGCCAG............................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........................TTTCAAGTCAAGCGGCTATGCAGCACGG.......................................................................................................................................................................................................................................................	28	7	0.86	6	6	0	0	0	0	0
...........................TTTCAAGTCAAGCGGCTATGCAGCACG........................................................................................................................................................................................................................................................	27	7	0.57	4	3	0	0	0	0	1
..............................................................................................................................ACGAAGCGGTACTGCCATCTGG..........................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................CGAAGCGGTACTGCCATCTGGAG........................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
...............................................................................................................................CGAAGCGGTACTGCCATCTGGAGT.......................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................GTCACACGAAGCGGTACTGCCATCTGG..........................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
...........................TTTCAAGTCAAGCGGCTATGCAGCAC.........................................................................................................................................................................................................................................................	26	7	0.43	3	1	2	0	0	0	0
...........................TTTCAAGTCAAGCGGCTATGCAG............................................................................................................................................................................................................................................................	23	7	0.43	3	3	0	0	0	0	0
...........................TTTCAAGTCAAGCGGCTATGCA.............................................................................................................................................................................................................................................................	22	7	0.43	3	3	0	0	0	0	0
...........................................TATGCAGCACGGTGGTTACGGTCGAGC........................................................................................................................................................................................................................................	27	6	0.33	2	1	1	0	0	0	0
.............................................................................................CCCCAATGCCATCGTTGCCAGGGC.........................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
....................................................................................................GCCATCGTTGCCAGGGCTTCGG....................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
....................................................................................................GCCATCGTTGCCAGGGCTTCG.....................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0	0
...................................................................................................TGCCATCGTTGCCAGGGCTTCGG....................................................................................................................................................................................	23	4	0.25	1	1	0	0	0	0	0
...........................................................TACGGTCGAGCCACCAAAAAAATTC..........................................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
...............................................CAGCACGGTGGTTACGGTCGAGC........................................................................................................................................................................................................................................	23	6	0.17	1	1	0	0	0	0	0
.................................................GCACGGTGGTTACGGTCGAGCC.......................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	1
...................................................ACGGTGGTTACGGTCGAGCCAC.....................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0
.....................................................................CCACCAAAAAAATTCGACGATG...................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0
.............................TCAAGTCAAGCGGCTATGCAGCACG........................................................................................................................................................................................................................................................	25	7	0.14	1	1	0	0	0	0	0
................................AGTCAAGCGGCTATGCAGCACG........................................................................................................................................................................................................................................................	22	7	0.14	1	1	0	0	0	0	0
............................TTCAAGTCAAGCGGCTATGCAG............................................................................................................................................................................................................................................................	22	7	0.14	1	1	0	0	0	0	0
...............................AAGTCAAGCGGCTATGCAGCACG........................................................................................................................................................................................................................................................	23	7	0.14	1	1	0	0	0	0	0
............................TTCAAGTCAAGCGGCTATGCAGCACG........................................................................................................................................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0
...........................................TATGCAGCACGGTGGTTACGG..............................................................................................................................................................................................................................................	21	7	0.14	1	1	0	0	0	0	0
.........................................GCTATGCAGCACGGTGGTTACGG..............................................................................................................................................................................................................................................	23	7	0.14	1	1	0	0	0	0	0

droBip1

GAGCCAGCCAAAAACAACAAGGAGGCCTTTAAAGTCAAGCGGCTATGCAGCACGGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAACCAGCCGCCAACAACAAAGAAATACATGAGCTTAAAACGCTTTGTCGTCAACGGATACAAGTTGAGCTTCCTTTCAAAAAGGACGTTGTCGTGCAATGCTATCGGTGCCAATCTTACAATCACACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGCCAGCATCTAACAACAAGGAAGCTTTTAACATCAAGAGGCTCTGCAGATCGGTTGTGACGGTGGAACCGCCCCATAAATTTGACGACATACCCCAATGCTATAGATGCCAAGGCTACGGACACAGCCAGCGATACTGCAGACTGCAAGCTAGGTGTGTAAA------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

------------------------------------------------------------------------------------------------------------TGCCAAGAATATGGACATACAGCCAAGTACTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAAAAGAATCTAAATAACAAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAGCCGGCTAACAACAACAAAGAGGCCTACCAGGTTAAGCGTCTCTGCAGCTCAGTGGTGACC------------------------------------------------------------------------------------------------ATAGA------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAGCCGGCGGCAAACAATAAAGA---------------------------------------------------------------------------ATGCCACCAGTGTCAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCTGCTGCGGCAAACAATAAGGAGATCCTGGCGGTAAAGGCACTATGCCATATGAGAGTAGTTATTGAGCCTCTCCGCAAGCGTAACGCTATTGTCCAGTGCCATCGTTGTCAGCAGTTTGGCCACACAGCCAAATACTGCCGTAAGGCCCACATTTGTGTGAAATGTGCCGGCGAACAC------CCAGCCAAGGACTGTA---------CCAGGCCACGCATCGAGCT------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................AGAGTAGTTATTGAGCCTCTCC..................................................................................................................................................................................................................................	22	13	35.69	464	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	3	0	6	0	6	1	0	0	0	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	8	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	3	5	0	2	2	0	0	0	5	7	4	7	0	5	2	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	0	140	0	4	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	35	0	1	10	26	1	24	4	31	18	19	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	12	0	2	0	0	0	0	0	0	5	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................CAAGGACTGTA---------CCAGGCCACGCATC.............................................................................	25	14	34.29	480	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	1	0	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	6	8	2	4	23	1	16	0	14	0	1	1	0	1	0	0	0	2	0	0	2	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	13	7	12	16	22	0	0	0	1	0	0	18	0	0	0	0	4	0	1	1	53	1	90	3	49	42	28	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................TATTGAGCCTCTCCGCAAGCGTAACGC.....................................................................................................................................................................................................................	27	14	33.14	464	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	8	2	2	0	1	0	0	0	2	0	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	4	1	0	2	0	4	0	6	0	1	0	0	2	1	0	1	1	1	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	3	0	1	2	1	1	0	0	0	0	0	4	2	1	1	11	42	34	0	0	0	4	0	2	1	56	0	39	0	32	52	44	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	1	2	3	0	0	0	0	0	0	20	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	3	5	3	0	0	0	0	0
......................................................AGAGTAGTTATTGAGCCTCTCCGC................................................................................................................................................................................................................................	24	13	32.38	421	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	1	1	0	0	0	0	0	4	0	3	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	1	0	9	3	8	0	5	7	0	1	0	0	0	0	8	7	5	0	1	2	7	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	3	0	0	17	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	60	1	2	5	28	0	37	2	39	18	43	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	8	0	1	0	0	0	0	0	0	6	7	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........GCAAACAATAAGGAGATCCTGGC..............................................................................................................................................................................................................................................................................	23	15	29.67	445	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	4	0	2	2	0	0	2	1	11	0	2	2	2	0	12	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	5	5	0	7	1	14	6	10	2	0	1	0	8	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	1	0	5	0	0	0	0	63	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	9	0	1	2	28	0	31	0	3	7	14	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	7	41	1	6	0	0	0	0	0	0	8	14	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	2	1	0	0	0	0	0	0
...................................................................................TAACGCTATTGTCCAGTGCCATCGT..................................................................................................................................................................................................	25	15	25.40	381	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	1	1	2	0	1	0	0	0	2	0	1	0	4	0	0	0	0	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	5	5	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	1	0	7	0	0	1	3	2	1	1	1	0	7	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	1	0	1	3	1	0	6	0	1	0	0	4	1	4	0	0	0	0	10	0	1	1	35	1	30	3	40	44	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	9	6	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	1	0	0	0	0	0	0
.........GCAAACAATAAGGAGATCCTGGCGG............................................................................................................................................................................................................................................................................	25	14	24.14	338	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	1	0	1	0	0	0	5	0	0	1	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	5	5	7	5	0	0	0	3	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	6	0	0	0	0	34	0	1	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	7	0	0	3	3	0	24	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	2	0	0	4	17	1	8	0	2	0	0	0	0	9	32	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	19	9	10	0	0	0	0	0	0
.........................................................................................TATTGTCCAGTGCCATCGTTGTC..............................................................................................................................................................................................	23	15	22.60	339	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	5	0	1	0	0	0	2	0	1	0	0	8	3	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	6	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	4	0	0	1	0	8	1	1	0	0	1	1	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	2	0	0	1	21	0	56	1	12	13	16	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	0	1	2	2	5	12	0	0	0	0	0	0	41	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	23	14	8	0	0	0	0	0	0
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..........................................................TAGTTATTGAGCCTCTCCGCAAGC............................................................................................................................................................................................................................	24	14	18.07	253	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	0	1	1	0	2	1	2	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	5	0	1	0	0	9	5	3	0	0	0	0	1	0	13	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	53	1	65	0	12	9	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	4	2	0	0	0	0	0	0
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.........................................................GTAGTTATTGAGCCTCTCCGCAA..............................................................................................................................................................................................................................	23	13	0.77	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GTGCCATCGTTGTCAGCAGT........................................................................................................................................................................................	20	13	0.77	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TGAGAGTAGTTATTGAGCCTCT....................................................................................................................................................................................................................................	22	13	0.77	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................................................................CAGTGCCATCGTTGTCAGCAGTTT......................................................................................................................................................................................	24	13	0.77	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
............AACAATAAGGAGATCCTGG...............................................................................................................................................................................................................................................................................	19	17	0.76	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GAACAC------CCAGCCAAGGAC........................................................................................................	18	20	0.75	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	9	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CCCACATTTGTGTGAAATGTGCCGGCGC..............................................................................................................................	28	16	0.75	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12

droSim2

GCTGCTGCGACAAACAATAAGGAGATCCTGGCGGTAAATGCACTATGTCGTATGAGAGTACTTATTGAGCCTTTCCGCAAGCGTAACGCTATTGTCCAGTGCCATCGTTGTCAGCAGTTTGGCCACACAGCCAAATACTGCCGTAAGGCCCACATTTGTGTGAAATGTGCCGGCGAACACC-------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGC...........................................................................................................................................................................................	24	12	81.92	983	0	2	13	2	24	0	477	264	148	31	19	1	2	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAG............................................................................................................................................................................................	23	13	76.69	997	0	1	7	1	0	0	442	271	189	57	17	0	12	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGC................................................................................................................................	23	9	54.00	486	0	0	2	0	0	0	3	438	5	38	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGA..............................................................................................................................	25	9	30.44	274	0	0	0	0	0	0	1	239	2	30	2	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCA.............................................................................................................................................................................................	22	13	21.92	285	0	0	0	0	0	0	173	72	23	6	2	0	7	2	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCA..........................................................................................................................................................................................	25	12	20.17	242	0	0	1	2	0	0	152	47	23	6	5	0	4	2	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGA...........................................................................................................................................................................................	24	13	9.38	122	0	0	0	0	0	0	72	31	8	6	1	0	4	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAGT........................................................................................................................................................................................	27	12	9.25	111	0	2	2	1	0	0	64	33	5	1	3	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGG.................................................................................................................................	22	9	8.00	72	0	0	0	0	0	0	0	58	1	13	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAA.............................................................................................................................	26	9	7.89	71	0	0	0	0	0	0	0	70	0	1	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTC..............................................................................................................................................................................................	21	13	6.62	86	0	0	3	0	0	0	42	16	20	3	1	0	0	1	0	0	0
.....TGCGACAAACAATAAGGAGATCCTGGC..............................................................................................................................................................................................................................................................................	27	6	5.67	34	0	0	0	0	0	0	6	4	5	6	0	0	13	0	0	0	0
......................................................................................................................TTGGCCACACAGCCAAATACTGCCGTA.............................................................................................................................................................	27	14	3.86	54	0	0	0	2	0	0	14	15	8	15	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCT..........................................................................................................................................................................................	25	12	3.58	43	0	0	0	0	0	0	30	5	7	1	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAG.........................................................................................................................................................................................	26	12	3.42	41	0	1	10	0	0	0	14	3	1	0	8	0	4	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCG...............................................................................................................................	24	9	3.11	28	0	0	0	0	0	0	1	22	0	5	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGT................................................................................................................................	23	9	2.89	26	0	0	0	0	0	0	1	17	0	8	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGT..............................................................................................................................	25	9	2.56	23	0	0	0	0	0	0	0	17	0	6	0	0	0	0	0	0	0
........GACAAACAATAAGGAGATCCTGGCGGT...........................................................................................................................................................................................................................................................................	27	7	2.43	17	0	0	0	0	0	0	0	16	0	1	0	0	0	0	0	0	0
.......................................................................................................................TGGCCACACAGCCAAATACTGCCGTA.............................................................................................................................................................	26	14	2.14	30	0	0	0	1	0	0	6	9	6	8	0	0	0	0	0	0	0
...........AAACAATAAGGAGATCCTGGCGGTAAA........................................................................................................................................................................................................................................................................	27	13	1.85	24	0	0	0	0	0	0	4	3	2	4	0	0	11	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAAA............................................................................................................................	27	9	1.78	16	0	0	0	0	0	0	0	12	0	4	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAGTT.......................................................................................................................................................................................	28	12	1.75	21	0	0	0	0	0	0	15	6	0	0	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAT............................................................................................................................................................................................	23	13	1.69	22	0	0	0	0	0	0	9	2	10	1	0	0	0	0	0	0	0
..........CAAACAATAAGGAGATCCTGGCG.............................................................................................................................................................................................................................................................................	23	17	1.65	28	0	0	0	0	0	0	0	0	0	0	0	0	26	2	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAGA........................................................................................................................................................................................	27	12	1.58	19	0	0	0	0	0	0	16	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAAC............................................................................................................................	27	9	1.56	14	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGC...............................................................................................................................................................................................	20	13	1.38	18	0	0	0	0	1	0	4	5	2	6	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGT...............................................................................................................................................................................................	20	13	1.31	17	0	0	0	0	0	0	3	6	1	3	2	0	1	1	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGAT..........................................................................................................................................................................................	25	13	1.31	17	0	1	0	0	0	0	11	1	1	1	0	0	2	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTG................................................................................................................................................................................................	19	13	1.31	17	0	0	0	0	14	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................................................TGTGTGAAATGTGCCGGCGAACAC..........................................................................................................................	24	10	1.30	13	0	0	0	0	0	0	0	1	1	0	1	0	8	2	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAA............................................................................................................................................................................................	23	13	1.15	15	0	0	0	0	0	0	3	3	5	2	0	0	2	0	0	0	0
.........................................................................................TATTGTCCAGTGCCATCGTTGTCAGCA..........................................................................................................................................................................................	27	9	1.11	10	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................GTGTGAAATGTGCCGGCGAACAC..........................................................................................................................	23	10	1.10	11	0	0	0	3	0	0	0	0	0	1	7	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGATT.........................................................................................................................................................................................	26	13	1.08	14	1	0	0	0	0	0	8	2	1	2	0	0	0	0	0	0	0
..........CAAACAATAAGGAGATCCTGGCGG............................................................................................................................................................................................................................................................................	24	17	1.00	17	0	0	0	0	0	0	1	0	0	0	0	0	16	0	0	0	0
.............................................................................................................................................................GTGTGAAATGTGCCGGCGAACA...........................................................................................................................	22	10	0.90	9	0	0	0	0	0	0	0	0	0	0	8	0	1	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGA................................................................................................................................	23	10	0.90	9	0	0	0	0	0	0	0	6	0	1	2	0	0	0	0	0	0
.............................................................................................................................................................GTGTGAAATGTGCCGGCGAACACC-------------------------------------------------------------------------------------------------------------------------	24	10	0.80	8	0	0	0	2	0	0	0	0	0	0	6	0	0	0	0	0	0
............................................................................................................................................................TGTGTGAAATGTGCCGGCGAACACC-------------------------------------------------------------------------------------------------------------------------	25	10	0.80	8	0	0	0	0	0	0	0	0	0	1	0	0	6	1	0	0	0
.................TAAGGAGATCCTGGCGGTAAATGCACTA.................................................................................................................................................................................................................................................................	28	4	0.75	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
......................................TGCACTATGTCGTATGAGAGTACT................................................................................................................................................................................................................................................	24	4	0.75	3	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0
..........................................CTATGTCGTATGAGAGTACTTATT............................................................................................................................................................................................................................................	24	4	0.75	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
..........................................CTATGTCGTATGAGAGTACTTATTGA..........................................................................................................................................................................................................................................	26	4	0.75	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAATGCACT..................................................................................................................................................................................................................................................................	27	4	0.75	3	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGT......................................................................................................................................	17	10	0.70	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
...........AAACAATAAGGAGATCCTGGCGGTA..........................................................................................................................................................................................................................................................................	25	16	0.63	10	0	0	0	0	0	0	2	2	1	0	2	0	3	0	0	0	0
............................................................................................................................................................TGTGTGAAATGTGCCGGCGAACAA..........................................................................................................................	24	10	0.60	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
........GACAAACAATAAGGAGATCCTGGC..............................................................................................................................................................................................................................................................................	24	7	0.57	4	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAT.............................................................................................................................	26	9	0.56	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTT..............................................................................................................................................................................................	21	13	0.54	7	0	0	0	0	0	0	2	2	1	1	1	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGAC..........................................................................................................................................................................................	25	13	0.54	7	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0
..........CAAACAATAAGGAGATCCTGGCGGT...........................................................................................................................................................................................................................................................................	25	17	0.53	9	0	0	0	0	0	0	0	1	0	0	0	0	8	0	0	0	0
............................................................................................TGTCCAGTGCCATCGTTGTCAGCAGT........................................................................................................................................................................................	26	12	0.50	6	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0
...........................................TATGTCGTATGAGAGTACTTATTGA..........................................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................TATTGTCCAGTGCCATCGTTGTC..............................................................................................................................................................................................	23	10	0.50	5	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................GTGTGAAATGTGCCGGCGAAC............................................................................................................................	21	10	0.50	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................TTTGTGTGAAATGTGCCGGCGAACACC-------------------------------------------------------------------------------------------------------------------------	27	10	0.50	5	0	0	1	0	0	0	2	1	0	0	0	0	1	0	0	0	0
....................................AATGCACTATGTCGTATGAGAGTACT................................................................................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.....TGCGACAAACAATAAGGAGATCCTGG...............................................................................................................................................................................................................................................................................	26	6	0.50	3	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAT.........................................................................................................................................................................................	26	12	0.50	6	0	0	0	0	0	0	3	0	0	0	2	0	1	0	0	0	0
....................................................TGAGAGTACTTATTGAGCCTTTCCGCA...............................................................................................................................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.............................................TGTCGTATGAGAGTACTTATTGAGC........................................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAA........................................................................................................................................................................................................................................................................	21	13	0.46	6	0	0	0	0	0	0	1	0	3	0	0	0	2	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAC.............................................................................................................................	26	9	0.44	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGTAT..............................................................................................................................	25	9	0.44	4	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0
............................................................................................................................................................TGTGTGAAATGTGCCGGCGAACA...........................................................................................................................	23	10	0.40	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
.......................................................................................................................TGGCCACACAGCCAAATACTGCCGT..............................................................................................................................................................	25	15	0.40	6	0	0	0	0	0	0	1	1	1	1	2	0	0	0	0	0	0
..........CAAACAATAAGGAGATCCTGGCGGTAA.........................................................................................................................................................................................................................................................................	27	13	0.38	5	0	0	0	0	0	0	1	1	0	0	0	0	1	2	0	0	0
.................TAAGGAGATCCTGGCGGTAAAA.......................................................................................................................................................................................................................................................................	22	13	0.38	5	0	0	0	0	0	0	1	1	0	2	0	0	1	0	0	0	0
.................TAAGGAGATCCTGGCGGTAA.........................................................................................................................................................................................................................................................................	20	13	0.38	5	0	0	0	0	0	0	1	0	0	0	1	0	2	1	0	0	0
.............ACAATAAGGAGATCCTGGCGGTAA.........................................................................................................................................................................................................................................................................	24	13	0.38	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
...........AAACAATAAGGAGATCCTGGCGGTAA.........................................................................................................................................................................................................................................................................	26	13	0.38	5	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0
............AACAATAAGGAGATCCTGGCGGTAAA........................................................................................................................................................................................................................................................................	26	13	0.38	5	0	0	0	0	0	0	1	1	0	2	0	0	1	0	0	0	0
.................TAAGGAGATCCTGGCGGTA..........................................................................................................................................................................................................................................................................	19	16	0.38	6	0	0	0	0	0	0	1	2	2	0	1	0	0	0	0	0	0
...........AAACAATAAGGAGATCCTGGCGGT...........................................................................................................................................................................................................................................................................	24	17	0.35	6	0	0	0	1	0	0	1	0	1	1	0	0	2	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAAT............................................................................................................................	27	9	0.33	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGTA...............................................................................................................................	24	9	0.33	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCTT.........................................................................................................................................................................................	26	12	0.33	4	0	0	0	1	0	0	1	0	0	2	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCT...............................................................................................................................	24	9	0.33	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................TTGGCCACACAGCCAAATACTGCCGT..............................................................................................................................................................	26	15	0.33	5	0	0	0	1	0	0	0	0	0	0	3	0	1	0	0	0	0
..TGCTGCGACAAACAATAAGG........................................................................................................................................................................................................................................................................................	20	6	0.33	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AAGGCCCACATTTGTGTGAAATGTGC....................................................................................................................................	26	9	0.33	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
..........CAAACAATAAGGAGATCCTGGCGGTA..........................................................................................................................................................................................................................................................................	26	16	0.31	5	0	0	0	0	0	0	0	1	0	0	0	0	3	1	0	0	0
..........................................................................................................................................................TTTGTGTGAAATGTGCCGGCGAACA...........................................................................................................................	25	10	0.30	3	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0
.........................................................................TCCGCAAGCGTAACGCTATTGTCCAG...........................................................................................................................................................................................................	26	10	0.30	3	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGAT...............................................................................................................................	24	10	0.30	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................TTGTGTGAAATGTGCCGGCGAACACC-------------------------------------------------------------------------------------------------------------------------	26	10	0.30	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
.............................................................................................................................................................GTGTGAAATGTGCCGGC................................................................................................................................	17	10	0.30	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........GACAAACAATAAGGAGATCCTGGCGGTA..........................................................................................................................................................................................................................................................................	28	7	0.29	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................GTGCCATCGTTGTCAGCA..........................................................................................................................................................................................	18	14	0.29	4	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0
................................GGTAAATGCACTATGTCGTATGAGAG....................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................TACTGCCGTAAGGCCCACATTTGTGT.............................................................................................................................................	26	12	0.25	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................TATTGAGCCTTTCCGCAAGCGTAACGA.....................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................CTATGTCGTATGAGAGTACTTAT.............................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................AATGCACTATGTCGTATGAGAGTACTTA..............................................................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............AACAATAAGGAGATCCTGGCGGTAAATT......................................................................................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................GATCCTGGCGGTAAATGCACTATGT..............................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................TGTCGTATGAGAGTACTTATTGA..........................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAATGCACA..................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................CTATGTCGTATGAGAGTACTTATTG...........................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TATTGAGCCTTTCCGCAAGCGTAACGC.....................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............AACAATAAGGAGATCCTGGCGGTA..........................................................................................................................................................................................................................................................................	24	16	0.25	4	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	0	0
..............................................................................................................................................................TGTGAAATGTGCCGGCGAACACC-------------------------------------------------------------------------------------------------------------------------	23	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAAT.......................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAATA......................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................TATGTCGTATGAGAGTACTTATTGAGC........................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAC.........................................................................................................................................................................................	26	12	0.25	3	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCTA.........................................................................................................................................................................................	26	12	0.25	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
..........................................CTATGTCGTATGAGAGTA..................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TGTCGTATGAGAGTACTTATTGAGCC.......................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAATT......................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................GGTAAATGCACTATGTCGTATGAGAGT...................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAC............................................................................................................................................................................................	23	13	0.23	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCATA...........................................................................................................................................................................................	24	13	0.23	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
............AACAATAAGGAGATCCTGGCGGTAA.........................................................................................................................................................................................................................................................................	25	13	0.23	3	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAAG............................................................................................................................	27	9	0.22	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGACT............................................................................................................................	27	9	0.22	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CATTTGTGTGAAATGTGCCGGCGAAC............................................................................................................................	26	9	0.22	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGATT............................................................................................................................	27	9	0.22	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGTT...............................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGC....................................................................................................................................	19	9	0.22	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAACG...........................................................................................................................	28	9	0.22	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................TGGCCACACAGCCAAATACTGCCGTAAAA..........................................................................................................................................................	29	14	0.21	3	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0
......................................................................................................................TTGGCCACACAGCCAAATACTGCCGTAAG...........................................................................................................................................................	29	14	0.21	3	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAAAAA.....................................................................................................................................................................................................................................................................	24	14	0.21	3	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0
.......................................................................................................................TGGCCACACAGCCAAATACTGCCGTAAG...........................................................................................................................................................	28	14	0.21	3	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0
..................................................................................................GTGCCATCGTTGTCAGCAG.........................................................................................................................................................................................	19	14	0.21	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................................................GTGTGAAATGTGCCGG.................................................................................................................................	16	10	0.20	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................GTGTGAAATGTGCCGGCGA..............................................................................................................................	19	10	0.20	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................TATTGTCCAGTGCCATCGTTGT...............................................................................................................................................................................................	22	10	0.20	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TTGTGTGAAATGTGCCGGCGAACAC..........................................................................................................................	25	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
.........................................................................................................................................................ATTTGTGTGAAATGTGCCGGCGAAA............................................................................................................................	25	10	0.20	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
...............AATAAGGAGATCCTGGCGGTA..........................................................................................................................................................................................................................................................................	21	16	0.19	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
..........CAAACAATAAGGAGATCCTGGCGA............................................................................................................................................................................................................................................................................	24	17	0.18	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCC..........................................................................................................................................................................................	25	12	0.17	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..TGCTGCGACAAACAATAAGGAGATCC..................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAGTA.......................................................................................................................................................................................	28	12	0.17	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAGC........................................................................................................................................................................................	27	12	0.17	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....CTGCGACAAACAATAAGGAGATCCT.................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....TGCGACAAACAATAAGGAGATCCTGGCG.............................................................................................................................................................................................................................................................................	28	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGT..................................................................................................................................................................................................	17	13	0.15	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGACT.........................................................................................................................................................................................	26	13	0.15	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................TTGGCCACACAGCCAAATACTGCCGTAAGG..........................................................................................................................................................	30	13	0.15	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.................TAAGGAGATCCTGGCGGTAAAAA......................................................................................................................................................................................................................................................................	23	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCT.............................................................................................................................................................................................	22	13	0.15	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
......GCGACAAACAATAAGGAGATCCTGGC..............................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................TTGGCCACACAGCCAAATACTGCCGTAA............................................................................................................................................................	28	14	0.14	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
........GACAAACAATAAGGAGATCCTGGCGGTAA.........................................................................................................................................................................................................................................................................	29	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........GACAAACAATAAGGAGATCCTGGCGG............................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................GCCATCGTTGTCAGCAGT........................................................................................................................................................................................	18	15	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................GTGCCATCGTTGTCAGCT..........................................................................................................................................................................................	18	15	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................ATCGTTGTCAGCAGT........................................................................................................................................................................................	15	15	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................GCCATCGTTGTCAGC...........................................................................................................................................................................................	15	15	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................TGGCCACACAGCCAAATACTGCCG...............................................................................................................................................................	24	15	0.13	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
..............CAATAAGGAGATCCTGGCGGTA..........................................................................................................................................................................................................................................................................	22	16	0.13	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
..................................................................................GTAACGCTATTGTCCAGTGCCATCGTTG................................................................................................................................................................................................	28	8	0.13	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................ATAAGGAGATCCTGGC..............................................................................................................................................................................................................................................................................	16	17	0.12	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............AACAATAAGGAGATCCTGGCGGT...........................................................................................................................................................................................................................................................................	23	17	0.12	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.............ACAATAAGGAGATCCTGGCGG............................................................................................................................................................................................................................................................................	21	17	0.12	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........CAAACAATAAGGAGATCCTGGCGT............................................................................................................................................................................................................................................................................	24	17	0.12	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
.................TAAGGAGATCCTGGCGGT...........................................................................................................................................................................................................................................................................	18	17	0.12	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................GTGCCATCGTTGTCA.............................................................................................................................................................................................	15	17	0.12	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
............AACAATAAGGAGATCCTGGC..............................................................................................................................................................................................................................................................................	20	17	0.12	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCA...............................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAATCT..........................................................................................................................	29	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCG..................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAAGG...........................................................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGTT.............................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGATA............................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AGGCCCACATTTGTGTGAAATGTGCC...................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................ACGCTATTGTCCAGTGCCATCGTTGTCA.............................................................................................................................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCA..................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................CGCAAGCGTAACGCTATTGTCCAGTGC........................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCC...................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAACA...........................................................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGAACAA..........................................................................................................................	29	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGCGTGA............................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATTTGTGTGAAATGTGCCGGGTT..............................................................................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GCTGCTGCGGCAAACAATAAGGAGATCCAGGCGGTAAAGGC------------------ACTTATTGAGCCACTCCGCAAGCGTAATGCTATTGTCCAGTGCCATCGTTGTCAGCAGTTTGGCCACACAGCCAAATACTGCCGTAAGGCCCACATTTGTGTGAAATGTGCTGGCGAACAAC-----CCAGCCAAGGACTGTA---------CTAGGCCACGCATCGAGCT------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGC...........................................................................................................................................................................................	24	20	1.00	20	12	0	7	1
....................................................................................................................................................................................................ACTGTA---------CTAGGCCACGCATCGAG..........................................................................	23	20	0.20	4	4	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAGT........................................................................................................................................................................................	27	20	0.15	3	3	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCA..........................................................................................................................................................................................	25	20	0.15	3	3	0	0	0
...................................................................................................................................................................................................GACTGTA---------CTAGGCCACGCATCGAGC.........................................................................	25	20	0.10	2	2	0	0	0
......................................................................................TGCTATTGTCCAGTGCCATCGTTGTC..............................................................................................................................................................................................	26	20	0.10	2	2	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAG.........................................................................................................................................................................................	26	20	0.10	2	1	1	0	0
...........................................................................................................................................................................................CAGCCAAGGACTGTA---------CTAGGCCACGCA...............................................................................	27	20	0.10	2	2	0	0	0
................................................................................................................................................................................................AAGGACTGTA---------CTAGGCCACGCATC.............................................................................	24	20	0.10	2	2	0	0	0
..TGCTGCGGCAAACAATAAGGAGATC...................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0
...........................................................................................................................................................TTGTGTGAAATGTGCTGGCGAAC............................................................................................................................	23	12	0.08	1	0	0	1	0
.....................................................................................................CCATCGTTGTCAGCAGTTTGGCCACA...............................................................................................................................................................................	26	15	0.07	1	1	0	0	0
............................................................................................TGTCCAGTGCCATCGTTGTCAGC...........................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
...........................................................................................................................................................................................CAGCCAAGGACTGTA---------CTAGGCCACGC................................................................................	26	20	0.05	1	0	0	1	0
...................................................................................................................................................................................AC-----CCAGCCAAGGACTGTA---------CTAGGCCAC..................................................................................	27	20	0.05	1	1	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCAGA........................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAG............................................................................................................................................................................................	23	20	0.05	1	0	0	0	1
...........................................................................................................................................................................................CAGCCAAGGACTGTA---------CTAGGCCACGCAT..............................................................................	28	20	0.05	1	1	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGCC..........................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................CTGTA---------CTAGGCCACGCATCGAGC.........................................................................	23	20	0.05	1	1	0	0	0
...........................................................................................TTGTCCAGTGCCATCGTTGTCAGATT.........................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.......................................................................................GCTATTGTCCAGTGCCATCGTT.................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
...GCTGCGGCAAACAATAAGGAGATCC..................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
...................................................................................................................................................................................................GACTGTA---------CTAGGCCACGCATCGA...........................................................................	23	20	0.05	1	0	0	1	0
............................................................................................................................................................................................AGCCAAGGACTGTA---------CTAG.......................................................................................	18	20	0.05	1	0	0	1	0
..TGCTGCGGCAAACAATAAGGAGATCC..................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0
............................................................................................TGTCCAGTGCCATCGTTGTCAGCAGT........................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................AGGACTGTA---------CTAGGCCACGCATC.............................................................................	23	20	0.05	1	1	0	0	0
...............................................................................................................................................................................................CAAGGACTGTA---------CTAGGCCACGCA...............................................................................	23	20	0.05	1	0	0	1	0
...........................................................................................................TTGTCAGCAGTTTGGCCACACAGC...........................................................................................................................................................................	24	20	0.05	1	0	0	1	0
......................................................................................TGCTATTGTCCAGTGCCATCGTTG................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
............................................................................................................................................................................................AGCCAAGGACTGTA---------CTAGGCCACGCAT..............................................................................	27	20	0.05	1	1	0	0	0

droYak3

GCCGCTGCGGCCAATAACAAGGAAATTCTG------------------------AGAGTGGTAATAGAGCCACTTCGCAAGCGCACTGCCATCGTGCAATGTCACCGATGCCAGCAGTTTGGTCACACGGCTAAATACTGCCGTAAAGCTTACATATGTGTGAA------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GAGCCTTCAAGCAACAAGAAAAAGGCTCT-----------------GCCACGCTGTGGTCTCCACCGAGGAGCCCAGAAAGTTCAATGACCTGGTGCAGTGCTACCGCTGCCAGGCTTTCGGGCATACCAAGAGGTACTGCAGACTGCAGTACACTTCCGTAAA------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................CAATGACCTGGTGCAGTGCTACCGC..................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	4
............................T-----------------GCCACGCTGTGGTCTCCACCGAG.........................................................................................................................................................................................................................................	24	16	0.13	2	2	0	0	0	0	0	0
.....................................................TGTGGTCTCCACCGAGGAGCCCAGAA...............................................................................................................................................................................................................................	26	16	0.06	1	1	0	0	0	0	0	0
............................T-----------------GCCACGCTGTGGTCTCCACCGAGG........................................................................................................................................................................................................................................	25	16	0.06	1	1	0	0	0	0	0	0
..........................TCT-----------------GCCACGCTGTGGTCTCCACCGA..........................................................................................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0	0
..........................TCT-----------------GCCACGCTGTGGTCTCCACCGAG.........................................................................................................................................................................................................................................	26	16	0.06	1	1	0	0	0	0	0	0
............................T-----------------GCCACGCTGTGGTCTCCACCGAGGTA......................................................................................................................................................................................................................................	27	16	0.06	1	0	0	0	1	0	0	0
...........................CT-----------------GCCACGCTGTGGTCTCCACCGAGGA.......................................................................................................................................................................................................................................	27	16	0.06	1	1	0	0	0	0	0	0
..............................................GCCACGCTGTGGTCTCCACCGAGGA.......................................................................................................................................................................................................................................	25	16	0.06	1	1	0	0	0	0	0	0
............................T-----------------GCCACGCTGTGGTCTCCACCGAGGAGC.....................................................................................................................................................................................................................................	28	16	0.06	1	1	0	0	0	0	0	0
................................................CACGCTGTGGTCTCCACCGAGGAGCCC...................................................................................................................................................................................................................................	27	16	0.06	1	1	0	0	0	0	0	0
...............................................CCACGCTGTGGTCTCCACCGAGGAGCC....................................................................................................................................................................................................................................	27	17	0.06	1	0	0	0	0	1	0	0
................................................CACGCTGTGGTCTCCACCGAGGAGCC....................................................................................................................................................................................................................................	26	17	0.06	1	1	0	0	0	0	0	0
....................................................CTGTGGTCTCCACCGAGGAGC.....................................................................................................................................................................................................................................	21	19	0.05	1	1	0	0	0	0	0	0
..................................................CGCTGTGGTCTCCACCGAGG........................................................................................................................................................................................................................................	20	19	0.05	1	0	0	0	0	0	1	0
...................................................................................CAATGACCTGGTGCAGTGCTACCGT..................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1
..........................................................................................CTGGTGCAGTGCTACCGCTGCC..............................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
......................AGGCTCT-----------------GCCACGCTGTGGTT..................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
............................................................................................................................ATACCAAGAGGTACTGCAGACTGCA.........................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0	0
.......................GGCTCT-----------------GCCACGCTGTGGTCT.................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
............................T-----------------GCCACGCTGTGGTCTCC...............................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0

dvi_12733

scaffold_12970:721197-721356 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-40.0	-40.0	-39.8