ID:

dvi_12703

 Coordinate:

scaffold_12967:751969-752119 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_15194:2]; CDS [Dvir\GJ14918-cds]; intron [Dvir\GJ14918-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAGCACGAAAGTTATGCTTTCAAAAATATTTTTATATAATTCCGCAACGAGTTGGCGTATTAAAAGTAATCAAATAGGTACTGGCATGTAGATAATTGTGCCGCCCCAATTTTTAATATATTTATATAGAAATATGAAGATATATTGTAATTCAATGTTTTATGTACTAATACTTTTCTTTACTTTTTATATTTTCGTAGATAAAATAAGTGATAGATATCTTTTATATGCATTAGACAGATATTGGCAT
**************************************************.......((((.((((((((......(((((.(((.(((((((..((((.........((((..((((((((((.((((....)))).)))))))))).))))))))..))))))).))).)))))....)))))))).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 V047
embryo
..................................................................................TGGAATGTAAATAATTATGCCG................................................................................................................................................... 22 3 1 23.00 23 23 0 0 0 0 0 0
..................................................................................TGGAATGTAGAGAATTATGCCG................................................................................................................................................... 22 3 1 15.00 15 15 0 0 0 0 0 0
..................................................................................TGGGATGTAGAGAATTATGCCG................................................................................................................................................... 22 3 1 13.00 13 13 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGCCG................................................................................................................................................... 22 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTATGCCG................................................................................................................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATGATGCCG................................................................................................................................................... 22 3 1 5.00 5 5 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAAGTATGCCG................................................................................................................................................... 22 3 3 3.33 10 10 0 0 0 0 0 0
..................................................................................TGGGATATAGATAATTATGCCG................................................................................................................................................... 22 3 1 3.00 3 3 0 0 0 0 0 0
..................................................................................TGGAACGTAGATAATTATGCCG................................................................................................................................................... 22 3 1 3.00 3 3 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTATGC..................................................................................................................................................... 20 2 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATGATGCC.................................................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGGAATGTAGTTAATTATGCCG................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAAGTTTGCCG................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGCTG................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGGGATGTAGTTAATTATGCCG................................................................................................................................................... 22 3 2 2.00 4 4 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGGCG................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAAGTATGCCG................................................................................................................................................... 22 3 3 2.00 6 6 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGCCC................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................................TGGAATATAGATAATTATGCCG................................................................................................................................................... 22 3 2 1.50 3 3 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGCAG................................................................................................................................................... 22 3 3 1.33 4 4 0 0 0 0 0 0
..................................................................................TGGGATGTAAATAATTATGCCG................................................................................................................................................... 22 3 3 1.33 4 4 0 0 0 0 0 0
..................................................................................TGGCATGTAAATAAGTCTGCCG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTTTTATATGCATTAGACA........... 19 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................TGGAATGTCGATAATTATGCCG................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0
..................................................................................TGGAATGTAGATGATTATGCCG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGCACGTACATAATTATGCCG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGTCG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTTTGCAG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTTTGCCG................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTATGCTG................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0
..................................................................................TGGGATGTCGATAATTATGCCG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAGATAAGTTTGCCG................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAGATAATTATGTCG................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................AAATAAAATAAGTGATAGATATCTT........................... 25 1 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................CTTTTATATGCATTAGACAGATATTGGC.. 28 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGCCT................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGAACGTAGATAATTTTGCCG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGCC.................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTATGCC.................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTATGCCC................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGAGAATTATGCC.................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTCGATAATTTTGCCG................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAAATAATTCTGTCG................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0
................................................................................................................................................................................................................................TTATATGCATTAGACAGATATT..... 22 0 1 1.00 1 0 0 0 1 0 0 0
..................................................................................TGGGATGTAGATGATTATGCCG................................................................................................................................................... 22 3 3 0.67 2 2 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATGATGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGACTGTAGATAATTATGCC.................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................CGGGATGTAGATAATTATGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAAGTTTGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTCGATAATTATGCC.................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0 0 0
..................................................................................TGGAACGTAGATAATTCTGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAAATAAGTATGCCG................................................................................................................................................... 22 3 4 0.50 2 2 0 0 0 0 0 0
..................................................................................TGGTATGTAGATAAGTATGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAAATAAGTTTGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATGATGC..................................................................................................................................................... 20 3 6 0.50 3 3 0 0 0 0 0 0
..................................................................................CGGAATGTAGATAATTATGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGAGAATTATGCC.................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTATGCAG................................................................................................................................................... 22 3 4 0.50 2 2 0 0 0 0 0 0
..................................................................................TGGGACGTAGATAATTATGCC.................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGGACGTAGATAATTATGCCG................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAGATAAGTTTGC..................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAGATAAGTCTGTCG................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAGATAAGTATGTC.................................................................................................................................................... 21 3 6 0.33 2 2 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATGTTGCCG................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTTTGCAG................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTTTGC..................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAAATAATTATGCC.................................................................................................................................................... 21 3 11 0.27 3 3 0 0 0 0 0 0
..................................................................................TGGCATGTAGATAAGCTTGCCG................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAAATAATTTTGCCG................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0
.........................................................................ACTAGTTACGGGCATGTAG............................................................................................................................................................... 19 3 5 0.20 1 0 0 0 0 1 0 0
..................................................................................TGGAATGTCGATAATTTTGCC.................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAACTATGCC.................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATG...................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGAGAATTATGC..................................................................................................................................................... 20 3 11 0.18 2 2 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATTATGCA.................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATAATGTTGCC.................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTCGATAATTTTGCC.................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................TACTGTTAATATTCTCGTAGA................................................. 21 3 6 0.17 1 0 0 0 0 0 1 0
..................................................................................TGGCATGTACATAATTATGTCG................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0
..................................................................................CGGGATGTAGATAATTATGC..................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0
..................................................................................TGGCATGTAAATAATTATGCAG................................................................................................................................................... 22 3 9 0.11 1 0 0 0 0 0 0 1
..................................................................................TGGGATGTAGATAATTAT....................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0 0 0 0
..................................................................................TGGAATGTAGATAATTATGCA.................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0
..................................................................................TGGGACGTAGATAATTTTGC..................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0
..................................................................................TGGGATGTAGATGATTATGC..................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0
..................................................................................TGGGATATAGATAATTATGC..................................................................................................................................................... 20 3 19 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CGTCGTGCTTTCAATACGAAAGTTTTTATAAAAATATATTAAGGCGTTGCTCAACCGCATAATTTTCATTAGTTTATCCATGACCGTACATCTATTAACACGGCGGGGTTAAAAATTATATAAATATATCTTTATACTTCTATATAACATTAAGTTACAAAATACATGATTATGAAAAGAAATGAAAAATATAAAAGCATCTATTTTATTCACTATCTATAGAAAATATACGTAATCTGTCTATAACCGTA
**************************************************.......((((.((((((((......(((((.(((.(((((((..((((.........((((..((((((((((.((((....)))).)))))))))).))))))))..))))))).))).)))))....)))))))).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 M027
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
...........CAATACGAAAGTTATGATA............................................................................................................................................................................................................................. 19 2 5 0.20 1 1 0 0 0
..........................................................................................................GGGTACAAATTATATAAATATA........................................................................................................................... 22 2 6 0.17 1 0 1 0 0
............................TAGCAATCTATTAAGGCGT............................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0
...................................................................................................AAGGCGGGGTCAAAGATTA..................................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12967:751919-752169 - dvi_12703 GCAGCACGAAAGTTAT------GCTTTCAAAAATATTTTTATATAATTCCGCAACGAGTTGGCGTATTAAAA---GTAATCAAATAGGTACTGGCATGTAGATAATTGTGCCGCCCCAATTTTTA----A-----T--------AT--------------------------------------------------------------------------------------------------ATTTATATAGAAATATG-AAGAT---------------------------------------AT-------------------------------------------------------------------------------------------------------------A--TT---G--TAATTCAATGTT---------------------------TTATGTACTAATACTTTTCTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTATATTTT-------------------------------------------------CGTAGATAAAATAAGTGATAGATATCTTTTATATGC----------ATTAGACAGATATTGGCAT
droMoj3 scaffold_6540:3381200-3381373 - ATG-------TTT--------TC-----ATA----------TAAAATTGGATT------TGTTGAAATAAAA---ATATGTATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------ATA----TA-T-------------ATATATATATATATATA------TATATAAA--TATATATTTTTTTTTAAT---------------------------ATAAAGAAACTCTTTCCTTATTTA-AGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------------------------------------------------AATAAATATAAATATTTATAGA--------------TAATATTTG-----AATAT-------AAA
droGri2 scaffold_15126:7993104-7993334 + GAA-------AGCTTT------TCTTTCACAAACAATTTTATATAATT-----------------------------------------------------------------------------ATCT-------------------------------------GATATAG-ACATATATGCGGTGTTG-------------------------------------------------------------------------------------CATACAGA-TATT-CATTT-------------------------------------------GTAGCAGGATTGAATAACATAAC---ATAATATATA----TATAATATATATTATATTTATACAACATAATATATATATA--AT---A--TATAT-----------------AGAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATATATAAGCTTATTTTTATATATACTCTTAATATATAATATTTTGTT--------------------------------------------------------------------------------A-----------------------A-----TAACT-------TTT
droWil2 scf2_1100000006508:1259-1411 + CTA-------ATA--------TT-----TA---------------------------------------------------------------------------------------------------T-----T----AC---ATTT-----ATATAA---------------------------------------------------------------------ATATATAAATATTTA---------ATAAAATATTATATATTTATATATTTATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGTAATTTTACTTA--------------------------------------------------------------------------------------------------------ATATATATATATATATAGAAAAAATTAATTATATAATAA-------------------------------------------------------------------------------------------------------------TA-----------TTTTTATATTA----------ATTTT------ACAAAAAT
dp5 4_group2:1103826-1103909 + TAT-------ACT--------AA-----C----------------------------------------------------------------------------------------------------A----TTTGGTTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATT-------------------------------------------------CATAGATAAAATAAGTGATAGATATCTTTTATATGC----------TTTAGACAGATATTGGCAC
droPer2 scaffold_2:1445037-1445169 - AAT-------CAA--------CT-----GA--------------G------------------------------------------------------------------------------------------T-----T------------------------------A-ACAAGTAAACGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAATTTATACTTGGATCTGAATTAATAAATAAACA-------------------------------------------------------------------------------------------CAACATTATAAATATTAATTATTTTCTTTAATTTTAATAAA--------GAATATG-----TTTTTATTG----------A----------TCAAATAA
droAna3 scaffold_12926:231361-231472 + TTG-------GAT--------AA-----A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATTAGAAATTG-GAAGT---------------------------------------GT-------------------------------------------------------------------------------------------------------------G--TT---T--ATTTTTATTTTT---------------------------TTTTCATGTTTTATTTTTCTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTATTTT-------------------------------------------------ATTCTAAACAAGAAAGGAAA-------------------------------------GCTAACTT
droBip1 scf7180000395149:11040-11140 - TTT-------TTA--------GT-----AT---------------------------------------------------------------------------------------------------TAATATT--------TT----------------------------------------------------------------------------------------------------------------ATT-AATAT---------------------------------------AT-------------------------------------------------------------------------------------------------------------A--AT---A--TACATATATTTT---------------------------TTTTGTACTAATTAATTTTTTTTTCTTTAA-ACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------------------------------------------------C--------------ATATATA--------------TATTT-----------------TTTGTAT
droKik1 scf7180000302258:352205-352449 - ATA-------CTT--------AC-----AAGGAAATTCTTCCATATTTCGTTTAC--ATTATTGTATTAATA---ACAATAATTTATATAGTA--------------------------------GATA-------------------------------------GATATACAAGATATATAAGACATTACAATCGATAATTAAATCAAATTTAATAATCAATTTGATCGAAAAATATATTTT--------------ATATTGAAATGCTAAATACAAAATTCTTCTTCAATATTTTGTT------------------------------------------------------------------------------------------------------------------------TATAT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT-------------------------------------------------AATAATTACAATAATTTGTACATTTTTTTTATATTT----------AC--------------TAG
droFic1 scf7180000453838:453687-453824 - CCC-------TAA--------TT-----GG---------------------------------------------------------------------------------------------TA----T-----T--------GC--------------------------------------------------------------------------------------------------ATTTTCAT------AT---------------------------------------------------------------------------------------------------------------GTG----TA-TG-----------------------------------TGGTGTGT--TG--------TT-------------------------------------------------------TTGAATATTACAA-----------TAATATGTTCCTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------GTGTCAT-------------------------------------------------TACAGATAAAATAAGTGATAGATATCTTTTATACGC----------TTTAGACAGATATTGGCAC
droEle1 scf7180000490295:46153-46344 + AAT-------GTT--------TT-----T----------------------------------------------------------------------------------------------------A----AATATGTACGCAA--GTAAT------T-----CA-------------------------------------------------------------TAGTTCAAATGTTTT---------AAAGAATATTTAATAAT-------------------------------------------------------------TGCAATAGCTGTAAG---GATATATGAACTTTCTTGTTGTATCTATTAT-T-----------------------------------GAAATATCATTAT--------ATTCATTTATACAGACTATTTTTTAT-----TTTATAATTTATTTATCTATA------------------------TA------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTTACT--------------------------------------------------------------------------------T-----------------------G-----TTCTT-------TTT
droRho1 scf7180000769177:8501-8597 - TCA-------AAGTATAATATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACATATTTTTTTTCT----TT------------------------------------------------------------------------------------------------------------------------------------AT-TTCT-------------------------------------------------TTCAGATAAAATAAGTGATAGATATCTTTTATACGC----------TTTAGACAGATATTGGCAC
droBia1 scf7180000302168:149641-149797 - TAA-------TGT--------TACCGACACATTATTTTTA--------------------------------------------------------------------------------------------------------GGA--TTAAG------T-----AA-------------------------------------------------------------TAAAAAAGATATTTT---------AGAAAATGTTAAATGATTAGATACTTATTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCATCATTTTGCTTAGGTGAAATGACACATATCCATTTTATATATGCTTTAAAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGATAATTGCAA
droTak1 scf7180000415863:300142-300270 + CAA-------ATA--------TC-----GA---------------------------------------------------------------------------------------------------T-----G----AC-------------------------------------------------------------------------------------------------------TTTTTAT------------------------------------------------------------------------------------------------------------------AATATATG----TA-AATAT-------------------------------A--TT---T--TATTTTTATGTT---------------------------C---------------------------TCTATTATAGTACTTAATTTGA-------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTAAATTTAGAAAATTAATTTAAAC------------------------------------------------CAAAAATTAACTTTTTTATGA----------A---------------TCA
droEug1 scf7180000409148:33170-33397 + TTT-------CAC--------AT-----T----TTTTTTTGTATAATTCCTTTTC------TTTGTGTAAAAAAAG-AGTAAATTATGTTCTGCCTT---------------------------------------------------------------------------------GAAT--------------------------------------------------------------------------------------GGTGTTTTCACACTTG-TCTT-GATCTTTTGTTAAAGTATATTATTAAATTTTT---------TGCCATGAGAGTACG---GAAACACCAACC---AAATTA------------------------------------------------------------------------------------------------------------T----------------------------------------AATTGTAATTTCTTTTT------------------------------------------------------------------------------------------------------------------------------------------ATAATTT-------------------------------------------------TCTCGGCGAAAAATGTGACAAGTGTTTATTTTATTA----------ATTCAATTGAT-------A
dm3 chrM:15886-16030 - CAT-------TTT--------TT-----T----------------------------------------------------------------------------------------------------A----TA---------T--------------------------------------------------------------------------------------------------ATAT--AT------AT---------------------------------------------------------------------------------------------------------------ATA----TA-TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGTGATTAAAATAAATTATTTTATTATATTTAT---AT-----AATTTAATTGAAA--------------------------ATTAAAATTATATATATATA-------------------------------------------------------------------------------------------T--------------------------------------------ATATATATAAA--------------TATAAATTG-----AATTT-------TTT
droSim2 2r:1590173-1590296 + TTT-------CTA--------CT-----AT--------------GTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------TTA----TA-T-----------------------------------GAAATATATTTTT--------TTCTCAATGTAATGACTTTTTTTTATGTTT---------------------------TAAATTACAGTAGTTAAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTTTGTA--------------TTTCCTTTGTA----TTAAATAGTATATT
droSec2 scaffold_40:12595-12740 - TTT-------TAA--------TA-----TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATAAATAT---------------------------------------------------------------------------------------------------------------ATA----TA-T-----------------------------------AAAAATTATATAA--------TTAAAATTATAACGACGATTATATATATAT---------------------------TAT-----------------------------------ATATATATTA---------------------------------------------------------------------------------------------------------------------------------------TTA-------------------------------------------------TATATATATTATATTATATATATATTATATATATAT---A------TATATATATATATAATTAT
droYak3 2L:12899226-12899360 - TAA-------TTG--------AT-----TG--------------------------------------------------------------------------------CCC----------------T-----C--------CT--------ATTTATCCATGT------------------------------------------------------------------------------AT------------AT---------------------------------------------------------------------------------------------------------------ATG----TA-T-----------------------------------GAGCTGCAA----------------------------------------------------------------------------------------TAACTTAACGTACTTCTCTTCT------------------------------------------------------------------------------------------------------------------------------------CTT---ATTCGCT-------------------------------------------------TTCAGATAAAATAAGTGATAGATATCTTTTATACGC----------TTTGGACAGATACTGGCAC
droEre2 scaffold_4929:15759727-15759884 - AAA-------GTA--------TCTTTGCATAAGCAA------------T-------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------ATAAATGAGAAGTAA---------ATAAAGTTTTATATATTTATTTATATATATTT---------------------------TTATACATTTTTAAATAATAGAAATAGAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAGTTTTA-------------------------------------------------------------TAAATTTATTTATAT--------------------------------------------ATATTTTTATA--------------TATTTTTTA-----TATTT-------TTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCAGCACGAAAGTTAT------GCTTTCAAAAATATTTTTATATAATTCCGCAACGAGTTGGCGTATTAAAA---GTAATCAAATAGGTACTGGCATGTAGATAATTGTGCCGCCCCAATTTTTA----A-----T--------AT--------------------------------------------------------------------------------------------------ATTTATATAGAAATATG-AAGAT---------------------------------------AT-------------------------------------------------------------------------------------------------------------A--TT---G--TAATTCAATGTT---------------------------TTATGTACTAATACTTTTCTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTATATTTT-------------------------------------------------CGTAGATAAAATAAGTGATAGATATCTTTTATATGC----------ATTAGACAGATATTGGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATATGC----------ATTAGACA...........1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATATGC----------ATTAGACAGATATTGGC..2811.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATGC----------ATTAGACAGATATT.....2211.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
ATG-------TTT--------TC-----ATA----------TAAAATTGGATT------TGTTGAAATAAAA---ATATGTATATATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------ATA----TA-T-------------ATATATATATATATATA------TATATAAA--TATATATTTTTTTTTAAT---------------------------ATAAAGAAACTCTTTCCTTATTTA-AGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------------------------------------------------AATAAATATAAATATTTATAGA--------------TAATATTTG-----AATAT-------AAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GAA-------AGCTTT------TCTTTCACAAACAATTTTATATAATT-----------------------------------------------------------------------------ATCT-------------------------------------GATATAG-ACATATATGCGGTGTTG-------------------------------------------------------------------------------------CATACAGA-TATT-CATTT-------------------------------------------GTAGCAGGATTGAATAACATAAC---ATAATATATA----TATAATATATATTATATTTATACAACATAATATATATATA--AT---A--TATAT-----------------AGAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATATATAAGCTTATTTTTATATATACTCTTAATATATAATATTTTGTT--------------------------------------------------------------------------------A-----------------------A-----TAACT-------TTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CTA-------ATA--------TT-----TA---------------------------------------------------------------------------------------------------T-----T----AC---ATTT-----ATATAA---------------------------------------------------------------------ATATATAAATATTTA---------ATAAAATATTATATATTTATATATTTATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGTAATTTTACTTA--------------------------------------------------------------------------------------------------------ATATATATATATATATAGAAAAAATTAATTATATAATAA-------------------------------------------------------------------------------------------------------------TA-----------TTTTTATATTA----------ATTTT------ACAAAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TAT-------ACT--------AA-----C----------------------------------------------------------------------------------------------------A----TTTGGTTTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATT-------------------------------------------------CATAGATAAAATAAGTGATAGATATCTTTTATATGC----------TTTAGACAGATATTGGCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAT-------CAA--------CT-----GA--------------G------------------------------------------------------------------------------------------T-----T------------------------------A-ACAAGTAAACGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAATTTATACTTGGATCTGAATTAATAAATAAACA-------------------------------------------------------------------------------------------CAACATTATAAATATTAATTATTTTCTTTAATTTTAATAAA--------GAATATG-----TTTTTATTG----------A----------TCAAATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTG-------GAT--------AA-----A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATTAGAAATTG-GAAGT---------------------------------------GT-------------------------------------------------------------------------------------------------------------G--TT---T--ATTTTTATTTTT---------------------------TTTTCATGTTTTATTTTTCTTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTATTTT-------------------------------------------------ATTCTAAACAAGAAAGGAAA-------------------------------------GCTAACTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTT-------TTA--------GT-----AT---------------------------------------------------------------------------------------------------TAATATT--------TT----------------------------------------------------------------------------------------------------------------ATT-AATAT---------------------------------------AT-------------------------------------------------------------------------------------------------------------A--AT---A--TACATATATTTT---------------------------TTTTGTACTAATTAATTTTTTTTTCTTTAA-ACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------------------------------------------------C--------------ATATATA--------------TATTT-----------------TTTGTATSizeHit CountTotal NormTotal
No Reads
droKik1
ATA-------CTT--------AC-----AAGGAAATTCTTCCATATTTCGTTTAC--ATTATTGTATTAATA---ACAATAATTTATATAGTA--------------------------------GATA-------------------------------------GATATACAAGATATATAAGACATTACAATCGATAATTAAATCAAATTTAATAATCAATTTGATCGAAAAATATATTTT--------------ATATTGAAATGCTAAATACAAAATTCTTCTTCAATATTTTGTT------------------------------------------------------------------------------------------------------------------------TATAT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT-------------------------------------------------AATAATTACAATAATTTGTACATTTTTTTTATATTT----------AC--------------TAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCC-------TAA--------TT-----GG---------------------------------------------------------------------------------------------TA----T-----T--------GC--------------------------------------------------------------------------------------------------ATTTTCAT------AT---------------------------------------------------------------------------------------------------------------GTG----TA-TG-----------------------------------TGGTGTGT--TG--------TT-------------------------------------------------------TTGAATATTACAA-----------TAATATGTTCCTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------GTGTCAT-------------------------------------------------TACAGATAAAATAAGTGATAGATATCTTTTATACGC----------TTTAGACAGATATTGGCACSizeHit CountTotal NormTotal
No Reads
droEle1
AAT-------GTT--------TT-----T----------------------------------------------------------------------------------------------------A----AATATGTACGCAA--GTAAT------T-----CA-------------------------------------------------------------TAGTTCAAATGTTTT---------AAAGAATATTTAATAAT-------------------------------------------------------------TGCAATAGCTGTAAG---GATATATGAACTTTCTTGTTGTATCTATTAT-T-----------------------------------GAAATATCATTAT--------ATTCATTTATACAGACTATTTTTTAT-----TTTATAATTTATTTATCTATA------------------------TA------------------------------------------------------------------------------------------------------------------------------------------------ATTCTTTACT--------------------------------------------------------------------------------T-----------------------G-----TTCTT-------TTTSizeHit CountTotal NormTotal
No Reads
droRho1
TCA-------AAGTATAATATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACATATTTTTTTTCT----TT------------------------------------------------------------------------------------------------------------------------------------AT-TTCT-------------------------------------------------TTCAGATAAAATAAGTGATAGATATCTTTTATACGC----------TTTAGACAGATATTGGCACSizeHit CountTotal NormTotal
No Reads
droBia1
TAA-------TGT--------TACCGACACATTATTTTTA--------------------------------------------------------------------------------------------------------GGA--TTAAG------T-----AA-------------------------------------------------------------TAAAAAAGATATTTT---------AGAAAATGTTAAATGATTAGATACTTATTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCATCATTTTGCTTAGGTGAAATGACACATATCCATTTTATATATGCTTTAAAATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGATAATTGCAASizeHit CountTotal NormTotal
No Reads
droTak1
CAA-------ATA--------TC-----GA---------------------------------------------------------------------------------------------------T-----G----AC-------------------------------------------------------------------------------------------------------TTTTTAT------------------------------------------------------------------------------------------------------------------AATATATG----TA-AATAT-------------------------------A--TT---T--TATTTTTATGTT---------------------------C---------------------------TCTATTATAGTACTTAATTTGA-------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTAAATTTAGAAAATTAATTTAAAC------------------------------------------------CAAAAATTAACTTTTTTATGA----------A---------------TCASizeHit CountTotal NormTotal
No Reads
droEug1
TTT-------CAC--------AT-----T----TTTTTTTGTATAATTCCTTTTC------TTTGTGTAAAAAAAG-AGTAAATTATGTTCTGCCTT---------------------------------------------------------------------------------GAAT--------------------------------------------------------------------------------------GGTGTTTTCACACTTG-TCTT-GATCTTTTGTTAAAGTATATTATTAAATTTTT---------TGCCATGAGAGTACG---GAAACACCAACC---AAATTA------------------------------------------------------------------------------------------------------------T----------------------------------------AATTGTAATTTCTTTTT------------------------------------------------------------------------------------------------------------------------------------------ATAATTT-------------------------------------------------TCTCGGCGAAAAATGTGACAAGTGTTTATTTTATTA----------ATTCAATTGAT-------ASizeHit CountTotal NormTotal
No Reads
dm3
CAT-------TTT--------TT-----T----------------------------------------------------------------------------------------------------A----TA---------T--------------------------------------------------------------------------------------------------ATAT--AT------AT---------------------------------------------------------------------------------------------------------------ATA----TA-TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGTGATTAAAATAAATTATTTTATTATATTTAT---AT-----AATTTAATTGAAA--------------------------ATTAAAATTATATATATATA-------------------------------------------------------------------------------------------T--------------------------------------------ATATATATAAA--------------TATAAATTG-----AATTT-------TTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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......................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT--TA--------T----------------------------T---------------------------TCAGATTTAGTGAT..............................................................................................................................................................................................................................................................................................2243.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000001000002000000000000000000000000000000000000000000000000000000000010000200000000100001000000000000000200000000
.............................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGA.................................................................................................................................................................................................................................................................................................2532.6780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGA.................................................................................................................................................................................................................................................................................................2232.6780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001030004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGT.................................................................................................................................................................................................................................................................................................2132.3370000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000010200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................T--TA--------T----------------------------T---------------------------TCAGATTTAGTGAT..............................................................................................................................................................................................................................................................................................1942.2590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000101100000000000110000100000000000200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................T--TA--------T----------------------------T---------------------------TCAGATTTAGTGA...............................................................................................................................................................................................................................................................................................1841.7570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010010300000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGTGAT..............................................................................................................................................................................................................................................................................................2531.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
.....................................................................................................................................................................................................................................................................................................................................................................................A----TA-TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAG..................................................................................................................................................................................................................................................................................................2721.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAAATAAATTATTTTATTATA........................................................................................................................................................................................................................................................................2571.43100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGAA................................................................................................................................................................................................................................................................................................2331.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------T----------------------------T---------------------------TCAGATTTAGTGATT.............................................................................................................................................................................................................................................................................................1941.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................T--TA--------T----------------------------T---------------------------TCAGATTTAGTGATT.............................................................................................................................................................................................................................................................................................2041.2550000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000010000000000000
...................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------ATA----TA-TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGA.......................................................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATA----TA-TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGA.......................................................................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TA----TA-TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAG........................................................................................................................................................................................................................................................................................................2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--TA--------T----------------------------T---------------------------TCAGATTTAGTGAT..............................................................................................................................................................................................................................................................................................2141.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTAT---AT-----AATTTAATTGA..............................................................................................................................................................................................................................................2231.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TA----TA-TA-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAG..................................................................................................................................................................................................................................................................................................2821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAGAA................................................................................................................................................................................................................................................................................................2431.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------T----------------------------T---------------------------TCAGATTTAGTGAT..............................................................................................................................................................................................................................................................................................1841.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------T----------------------------T---------------------------TCAGATTTAGTGATTAAAAT........................................................................................................................................................................................................................................................................................2431.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TA--------T----------------------------T---------------------------TCAGATTTAGTGATT.............................................................................................................................................................................................................................................................................................2140.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TA--------T----------------------------T---------------------------TCAGATTTAGTGA...............................................................................................................................................................................................................................................................................................1940.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGTGATTAAAATAA......................................................................................................................................................................................................................................................................................1980.7560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------TAATTAAT--TA--------T----------------------------T---------------------------TCAGAT......................................................................................................................................................................................................................................................................................................1940.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................T--TA--------T----------------------------T---------------------------TCAGATTTAGTGATA.............................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT--TA--------T----------------------------T---------------------------TCAGATTTAGTGATTAAAAA........................................................................................................................................................................................................................................................................................2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTAT---AT-----AATTTAATA................................................................................................................................................................................................................................................2090.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---AT-----AATTTAATTGAAA--------------------------..................................................................................................................................................................................................................1890.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T-------TTT--------TT-----T----------------------------------------------------------------------------------------------------A----TA---------T--------------------------------------------------------------------------------------------------ATAT--AT------AT---------------------------------------------------------------------------------------------------------------ATA----TA-TA-----------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---AT-----AATTTAATTGAAA--------------------------AA................................................................................................................................................................................................................20100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTATATATATATA-------------------------------------------------------------------------------------------T--------------------------------------------ATATATATA.............................................2750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------T----------------------------T---------------------------TCAGATTTAGTGATTCTG..........................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATA-------------------------------------------------------------------------------------------T--------------------------------------------ATATATATAAA--------------TATAAAT......................2750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AT---------------------------------------------------------------------------------------------------------------ATA----TA-TA-----------------------------------TAATTAAT--TA--------.....................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATTTTATTATATTTAC---................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAAA.................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTAAT--TA--------T----------------------------T---------------------------TCAGATTTAAAA................................................................................................................................................................................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTT--------TT-----T----------------------------------------------------------------------------------------------------A----TA---------T--------------------------------------------------------------------------------------------------ATAT--AT------AT---------------------------------------------------------------------------------------------------------------ATA----TA-..............................................................................................................................................................................................................................................................................................................................................................................................................................23120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AT---------------------------------------------------------------------------------------------------------------ATA----TA-TA-----------------------------------TAATTAAT--T..............................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTT-------CTA--------CT-----AT--------------GTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------------------------TTA----TA-T-----------------------------------GAAATATATTTTT--------TTCTCAATGTAATGACTTTTTTTTATGTTT---------------------------TAAATTACAGTAGTTAAAATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTTTGTA--------------TTTCCTTTGTA----TTAAATAGTATATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTT--------TTCTCAATGTA..........................................................................................................................................................................................................................................................................................................................................................18100.10100000000010000000
droSec2
TTT-------TAA--------TA-----TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATAAATAT---------------------------------------------------------------------------------------------------------------ATA----TA-T-----------------------------------AAAAATTATATAA--------TTAAAATTATAACGACGATTATATATATAT---------------------------TAT-----------------------------------ATATATATTA---------------------------------------------------------------------------------------------------------------------------------------TTA-------------------------------------------------TATATATATTATATTATATATATATTATATATATAT---A------TATATATATATATAATTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TAA-------TTG--------AT-----TG--------------------------------------------------------------------------------CCC----------------T-----C--------CT--------ATTTATCCATGT------------------------------------------------------------------------------AT------------AT---------------------------------------------------------------------------------------------------------------ATG----TA-T-----------------------------------GAGCTGCAA----------------------------------------------------------------------------------------TAACTTAACGTACTTCTCTTCT------------------------------------------------------------------------------------------------------------------------------------CTT---ATTCGCT-------------------------------------------------TTCAGATAAAATAAGTGATAGATATCTTTTATACGC----------TTTGGACAGATACTGGCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAA-------GTA--------TCTTTGCATAAGCAA------------T-------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------ATAAATGAGAAGTAA---------ATAAAGTTTTATATATTTATTTATATATATTT---------------------------TTATACATTTTTAAATAATAGAAATAGAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAGTTTTA-------------------------------------------------------------TAAATTTATTTATAT--------------------------------------------ATATTTTTATA--------------TATTTTTTA-----TATTT-------TTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:29 PM