ID:

dvi_12585

 Coordinate:

scaffold_12963:19421118-19421268 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.5 -10.3 -10.1

Flybase annnotation

exon [dvir_GLEANR_2368:4]; CDS [Dvir\GJ17802-cds]; intron [Dvir\GJ17802-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGACATGTGGACCGGCCAGGATCGGTTAAGCTGATAGCGCCCAAAAAAAGTAAGCATCGTTCCAATGAGCACGTTACTAATCCTCCTGTTATCTCTTTACAGAAACTCTGTCGGTTTTTTGCTTTTGTTGTTTTGCTGCAATTTGACACGAACTTCTTGTGTGTGTATTTTTGTTGAAATCATTTTAAGGAGTTTAATTTTCGCTTGGGGTGGTTGATTAATTGATTGATTGATTGATTGGGCTGGGTCA
*********************************************************************************************.....(((((((..((((((((......((............))......)))))).))..)))).)))..*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V047
embryo
 M047
female body
 V116
male body		 GSM1528803
follicle cells		 SRR060674
9x140_ovaries_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 V053
head
 M028
head
 SRR060657
140_testes_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106730
embryo_16-30h
 SRR060656
9x160_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR1106728
larvae
...............................................................................................................................................................................................................................TGATTGATTGATTGATTGGGCT...... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................AGAGCACGTTACTAATCCTCCTGTTATCT............................................................................................................................................................ 29 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GACACTAACTTCTTATGTG....................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................AGAGCACGTTACTGATCCTCCTGTTATCT............................................................................................................................................................ 29 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CTCTTTACAGAAACTCTGTCGGT....................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TGCAATTTGACACGAACTTCTTGTGTG....................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGAAACTCTGTCGGTTTTTTGCTTT............................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ACACGAACTTCTTGTGTGTGTA................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAGCATCGTTCCAATGAGC.................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GCTGATAGCGCCCAAAAA........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CTAATCCTCCTGTTATCTCTTTA....................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......GATGGACCGGCCAGGATCGGTTAAGCTGATAGCGCCCAAA............................................................................................................................................................................................................. 40 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................AATTTGACACGAACTTCTTGTGTGTGC.................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AACTCTGTCGGTTTTTTGCTTC............................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTGCAATTTGACACGAACTTCT............................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................TAAGCTGATAGCGCCCAAAAA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................AACTTTCGCTTGGGATGGGTG.................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACTTCTTGTGTGTGTATTT................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................ATCTCTTTACAGAAACTCTGTCGGT....................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTTGCTGCAATTTGACACGAA.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTTGAAATCATTTTAAGGAG.......................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CATGTGGACCGGCCAGGAT.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTTGAAATCATTTTAAGGAGTTTAA..................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................TGTTTTGCTGCAATTTGACA...................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TTCCAATGAGCACGTTACT............................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GGTTTTTTGCTTTTGTTGTTTTTC.................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATGTGGACCGGCCAGGATCGGT................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................AACTTCTTGTGTGTGTATTT................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GGCCAGGATCGGTTAAGCT.......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................TAAGCTGATAGCGCCCAAA............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GGCCAGGATCGGTTAAGCTGAT....................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGCTGCAATTTGACACGAACTTCTTGTG......................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................TTCGTGTGTGTGTATTTTTGTTGAAAGC..................................................................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTAATTTTCGCTTGGGGTGGTT................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GGCCAGGATCGGTTAAGCTGATAGC.................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GTTTAATTTTCGCTTGGGGC....................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACCGGCCAGGATCGGTTAAGCTG......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTTAGTTTTCGCTTGGGGTGGTG................................... 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCTTTTTTTGCTTTGCTGCA.............................................................................................................. 21 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTGGTGGAAATCATTTTCAGGA........................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................CTTTGAAGCTGATAGCGCCC................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................TGAGATCATTTTGACGAGTTT....................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................TTTCCGCTTGGGGTG...................................... 15 1 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
........................................................................................................................................................................................................................GATTAATTGATTGATTGAT................ 19 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATTGATTGGGATGGGTGA 18 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGAGATCATTTTAAAGAGTGT....................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATTGATTGATTGATAGATTGG......... 21 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAATTGATTGATTGATTGAT............ 20 0 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAACGGTCCAAGGAGCACG................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATTGATTGATTGATTGATTG.......... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTGTACACCTGGCCGGTCCTAGCCAATTCGACTATCGCGGGTTTTTTTCATTCGTAGCAAGGTTACTCGTGCAATGATTAGGAGGACAATAGAGAAATGTCTTTGAGACAGCCAAAAAACGAAAACAACAAAACGACGTTAAACTGTGCTTGAAGAACACACACATAAAAACAACTTTAGTAAAATTCCTCAAATTAAAAGCGAACCCCACCAACTAATTAACTAACTAACTAACTAACCCGACCCAGT
***************************************************************************************.....(((((((..((((((((......((............))......)))))).))..)))).)))..********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060689
160x9_testes_total
 SRR060670
9_testes_total
 M027
male body
..CTGTACACATGGCCGGTCATAGA.................................................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0
.....................................................................................................TCTTTGAGCCAGCCAACTAAC................................................................................................................................. 21 3 3 0.33 1 0 1 0 0
...........................................................CAAGGGTACTTCTGCAATG............................................................................................................................................................................. 19 3 13 0.08 1 0 0 1 0
............GGCCGGCCCTCACCAATT............................................................................................................................................................................................................................. 18 3 16 0.06 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:19421068-19421318 + dvi_12585 TGGACATGTGGACCGGCCAGGATCGGTTAAGCTGATAGCGCCCAAAAAAAGTAAGCATCGT----TCCAATGAG-CACGTTACTAA--TCCTCCTGTTAT------------CT-CTTTACAG------AA-ACTCTGTCGGTTTTTTGCT----TTT--GTTGTT----TTGC-----TGCAAT--T-TGAC--A--CGAACTTCTTGTGTGTGTATT-TTTGTTGAAATCA-----------------TTTTAAGGAGTTTAATTTT-CGCTTGGGGTGG-T-TGATT-AATTGAT-TGATT---GATTGA------------TTGGGCTGGGTCA
droMoj3 scaffold_6500:23792550-23792786 - CGGACATGTAGACCGGCCGGGATCCGTTAAGCTGATAGCGCCCAAAAAGAGTAAGTATCAT----TCCATAGA-GCTCATTACTAA--TCTCTCTGTTCT--------AT-----CTTTACAG---------AAACTGAAGGTT-TTTGCT----TTA--GTTG-T----TTGC-----AGAAAT--T-TGA--GA--CGAACTTG-----TGTGTATT-TTTGTTGAAATCA-----------------TTTTAAGGAGTTTAATTTTTCGCTTGGGGTTG-A-TC----GATTGAT-TGGTTGATGGGTGGGTG------------------GCTC
droGri2 scaffold_15252:7285606-7285865 + CGGACATGTGGAACGTCCTGGATCTGCGAAATTAATAGCGCCCAAAAAGAGTAAGCATCTTGAT--TCTTGGA-ATAAATTACTAAAATGCCC-CTTT---TTTG-----T-CT-CTTTACAGG------AAACACTGCCAGTT-TTTGCT----TTT--GTTGTT----TCGT-----GTGTAA--A-C---------AAATTTG-----TGTGTAAT-TTTGTTGAATTC----------------ATTTTTAAGGAGTTTAATTTT-CGCTTGGGTTGC-TTTCATA-AATTGAT-TG----ATGATTGGTTGGGTTATCGTTTGGGGTGGAGCG
droWil2 scf2_1100000004585:2262135-2262273 - CGGTCTTGTGGAGCGTCCCGGCTCCGCAAAGCTCATAGCACCTAAAAAGAGTAAGCATTCCAG--ACAA---ACGAGCTTTATTAA--TCTTG-TTTTTTTCT-----TTT-TC-ATTCACAGA--------AATTGGATGGTT-TTTGCT----TTT--GTTGTG----TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group2:464269-464531 - CGGCCACGTGGAGCGACCAGGAGCGGCCAAGCTGATCGCTCCCAAAAAGAGTAAGCATCTCCTATTCCA---AACTTCCTTACTAA--TCCCC-TTTTCT----CTCAGCGTTT-ATTCACAGGTCG-TCGTATATTGGTGGTT-TTTGCTACA-TTT--TTT--TTTTGTCGATTCAGT-----TATCAGAAAAC--CGTG-TTT-----TCTGTATTATTTGTTGATCT--A----------TTCCCGATTGAAGGTGTTTAATTCT--AGCTGGGGGGCAG-TTTCACGA-------C----------AA------------TTGGACTAAATTC
droPer2 scaffold_8:3424470-3424705 + CGGCCACGTGGAGCGACCAGGAGCGGCCAAGCTGATCGCTCCCAAAAAGAGTAAGCATCTCCTATTCCA---AACTTCCTTACTAA--TCCCC-TTTTCT----CTCAGCGTTT-ATTCACAGGTCG-TCGTATATTGGTGGTT-TTTGCTACATTTT--TTT--TTTTGTCGATTCAGT-----TATCAGAAAAC--CGTG-TTT-----TCTGTATTATTTGTTGATCT--A----------TTCCCGATTGAAGGTGTTTAATTCT--AGCTGGGGG----------------------------------------------------------
droAna3 scaffold_12916:2595323-2595544 + CGGTCATGTGGAGCGGCCCGGCGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCATCCCGT--TGTC---AGAATCCCTACTAA--TACTT-TTCTTT-CTTT-------TCGTTCCACAGCCCA-GGA----CTGGTGGTT-TTTGCT----TTT--GTTG--------AA-----TTG-A---C-TGAAAGT--CACG-T-------TATGTATTATTTGTTAATCTTTT-CGCACTCGTTTCGAGACTGAAGGTGTTTACT-TT--GCTTCGGGCGG--------------------------------------------------------
droBip1 scf7180000396430:531805-532052 + CGGTCACGTGGAGCGGCCCGGTGCCGCTAAGCTGATAGCACCCAAAAAGAGTAAGCATCCTTAT--GTC---AGAAGCCCTACTAA--TACTT-TGCTTT-CTTT-------TCATTCCACAGCCCA-GGA----CTGGTGGTT-TTTGCT----TTT--GT--------TCAA-----TTG-A---C-TGAAAGTCTCG---T-------TATGTATTATTTGTTAATCTTTT-CGCACTCGTTTGGAGACTGAAGGTGTTTACT-TT--GCTTCGGGTGG-G--CTAA-AATTTAA-TG----AGTCGTGTGTG---------------------G
droKik1 scf7180000301725:132972-133109 - GGGCCATGTGGAGCGGCCGGGAGCAGCCAAGCTGATCGCGCCCAAAAAGAGTAAGCATTTG-A-TTATG---AGAAACCCTATTAA--CGATC-TCTTTT----TCTTGTT-CT------TGTTTCA-GGA-TCTTTGGTGGTT-TTTGCT----TTTTTGTG--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453904:1143300-1143520 + GGGACATGTGGAGCGGCCCGGAGCCGCCAAGCTGATTGCACCCAAAAAGAGTAAGTATCTG-T-CTTTG---AGAAACCCTACTAA--CGCTC-TTTTCC----TTCTGTT-TCAATTCGCAGCCCT-GCAGACTTTGGTGGTT-TTTGCT----TTT--GTA--T----TTGG-----TCGGAG--T-CGAAAGT--CGTACTCC-----AGCGTATTATTTGTTGATCTCTC-----------------TTCAAGGTGTTTAATTTT--GCTTGGGGCGG--------------------------------------------------------
droEle1 scf7180000490458:413987-414208 - CGGACATGTGGAGCGGCCCGGAGCCGCCAAACTGATTGCGCCCAAAAAGAGTAAGCATCCG-A-TTTCG---AAAAACCCTACTAA--TGCTC-TCCTTC-TT-TTCCATT-CCATTTCACAGCGCTCGGAGTCTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----TCGGAGTCT-CGAAAGTCTCGTACTCC-----GCCGTATTATTTT------T-----------------CTCCTCAAGGTGTTTAATTTT--GCTTGGGATGG--------------------------------------------------------
droRho1 scf7180000769144:76310-76547 - GGGACATGTGGAGCGGCCCGGAGCCGCCAAACTGATTGCGCCCAAAAAGAGTAAGCATCTG-A-TTTCG---AGTGATCCTACTAA--TGCCC-TTTCTT----TTCTATT-TCATTTCACAGCCCC-GGAGTCTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----TCGGAG--T-CGAAAGT--CGTACTCC-----GCCGTATTATTTGTTCATCTCTC----------TTCTCTCCTCAAGGTGTTTAATTTT--GCTTGGGATGG-G-TCTTA-AATT-------------------------------------------
droBia1 scf7180000302261:2937862-2938099 - GGGACACGTGGAGCGGCCTGGAGCCGCCAAGCTGATTGCGCCCAAGAAGAGTAAGCATGCG-A-CTTCG---AGAAACCCTACTAA--TGCTC-TCTCCT----CTCTACT-TTACTCCACAGCCCA-GCAGACTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----ACGGAG--T-CGAA-GTATCGAGCTCC-----GCCGTATTATTTGTTGATCTCAC-----------TTCTCCCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT-------------------------------------------
droTak1 scf7180000415856:548643-548895 + GGGACATGTGGAGCGGCCTGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCATTCCGT--ACCG---AGAAACCCTACTAA--TGGTT-TTCTTT-CTTA-----T-CTATTTCACAGCCCTCGAAGAACTTGGTGGTT-TTTGCT----TTT--GTG--TTGTATCGA-----TCGGAGTAT-CGAAAGTCTCGAACTCC-----GCCGTATTATTTGTTGATCTCTCTCACACACTTTTCC--CATCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT-------------------------------------------
droEug1 scf7180000409554:1600590-1600824 + CGGCCATGTGGAGCGGCCCGGAGCCGCCAAGCTGATCGCACCCAAAAAGAGTAAGCATTTG-A-TTTCG---AGAAATCCTATTAA--TGTTC-TTTCTT----TTCTAAT-TTTCTTCACAGCCCT-GGAGACTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----TCGGAG--T-CGAATAT--CGTACTCC-----GCCGTATTATTTGTTGATCTCTC---------------CTCTCAAGGTGTTTAATTTT--GCTTGGGGTGG-G-TCTTA-AATTAA-----------------------------------------
dm3 chr2L:873490-873722 + GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCT---AGAATCACTATTAA--TGCTC-TTCTCT--------ATT-TTATTCCACAGCCCA-AGA-ACTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-CGAATGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCCA----------TTCCATTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT------------------------------------------G
droSim2 2l:836424-836655 + dsi_4118 GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCC---AGAATCACTATTAA--TGCTC-TTCTCT--------ATT-TT-TTCCACAGCCCA-ACA-ACTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-CGAATGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCCA----------TTCCATTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT------------------------------------------G
droSec2 scaffold_14:844205-844436 + GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCC---AGAATCACTATTAA--TGCTC-TTCTCT--------ATT-TT-TTCCACAGCCCA-ACA-ACTTTGGTGGCT-TTTGCT----TTT--TTT--T----TCGA-----TCGGAG--T-CGAATGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCCA----------TTCCATTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT------------------------------------------G
droYak3 2L:858012-858264 + GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAAAGTAAGCAACTG-AT--GCG---AGAATCCATACTAA--TGCTC-TTCTCT--------ATT-TTATTCCACAGCCCA-GCA-GCTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAT--T-CGAAAGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCTA----------TTCCCTTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATTAATATA----------AA------------TAGTGCAGAAGTG
droEre2 scaffold_4929:931596-931827 + GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCG---AGAATCAAAACTAA--TGCTC-TTCTCT--------ATT-TTATTCCACAGCCCA-GCA-ACTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-CGAAAGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCTA----------TTCCCTTCTGAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT-------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGGACATGTGGACCGGCCAGGATCGGTTAAGCTGATAGCGCCCAAAAAAAGTAAGCATCGT----TCCAATGAG-CACGTTACTAA--TCCTCCTGTTAT------------CT-CTTTACAG------AA-ACTCTGTCGGTTTTTTGCT----TTT--GTTGTT----TTGC-----TGCAAT--T-TGAC--A--CGAACTTCTTGTGTGTGTATT-TTTGTTGAAATCA-----------------TTTTAAGGAGTTTAATTTT-CGCTTGGGGTGG-T-TGATT-AATTGAT-TGATT---GATTGA------------TTGGGCTGGGTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................TGAT-TGATT---GATTGA------------TTGGGCT......2212.002000000000000000000000000000000000000000000000000000000000002000
................................................................................................................CT-CTTTACAG------AA-ACTCTGTCGGT...................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TGCAAT--T-TGAC--A--CGAACTTCTTGTGTG.............................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................AG------AA-ACTCTGTCGGTTTTTTGCT----TT.....................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................AC--A--CGAACTTCTTGTGTGTGTA.........................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
....................................................AAGCATCGT----TCCAATGAG-C......................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..............................GCTGATAGCGCCCAAAAA..................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................CTAA--TCCTCCTGTTAT------------CT-CTTTA..........................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................AAT--T-TGAC--A--CGAACTTCTTGTGTGTGC..........................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................A-ACTCTGTCGGTTTTTTGCT----TC.....................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................C-----TGCAAT--T-TGAC--A--CGAACTTCT...................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
...........................TAAGCTGATAGCGCCCAAAAA..................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................ACTTCTTGTGTGTGTATT-T.....................................................................................................................1911.001000000000000000000000001000000000000000000000000000000000000000
..................................................................................................AT------------CT-CTTTACAG------AA-ACTCTGTCGGT...................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................T----TTGC-----TGCAAT--T-TGAC--A--CGAA........................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GTTGAAATCA-----------------TTTTAAGGAG..............................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....CATGTGGACCGGCCAGGAT...........................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TGTTGAAATCA-----------------TTTTAAGGAGTTTAA.........................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................TGTT----TTGC-----TGCAAT--T-TGAC--A--............................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................T----TCCAATGAG-CACGTTACT..............................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....ATGTGGACCGGCCAGGATCGGT.......................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................AACTTCTTGTGTGTGTATT-T.....................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............GGCCAGGATCGGTTAAGCT.................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
...........................TAAGCTGATAGCGCCCAAA....................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..............GGCCAGGATCGGTTAAGCTGAT..............................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TGC-----TGCAAT--T-TGAC--A--CGAACTTCTTGTG...............................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTAATTTT-CGCTTGGGGTGG-T-T....................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..............GGCCAGGATCGGTTAAGCTGATAGC...........................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................GTTTAATTTT-CGCTTGGGGC..........................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...........ACCGGCCAGGATCGGTTAAGCTG................................................................................................................................................................................................................................................................................................................2311.001000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GATT-AATTGAT-TGATT---GAT............................1980.131000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................T-AATTGAT-TGATT---GATTGA------------T............20170.061000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATTGAT-TGATT---GATTGA------------TTG..........20200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
CGGACATGTAGACCGGCCGGGATCCGTTAAGCTGATAGCGCCCAAAAAGAGTAAGTATCAT----TCCATAGA-GCTCATTACTAA--TCTCTCTGTTCT--------AT-----CTTTACAG---------AAACTGAAGGTT-TTTGCT----TTA--GTTG-T----TTGC-----AGAAAT--T-TGA--GA--CGAACTTG-----TGTGTATT-TTTGTTGAAATCA-----------------TTTTAAGGAGTTTAATTTTTCGCTTGGGGTTG-A-TC----GATTGAT-TGGTTGATGGGTGGGTG------------------GCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................AACTGAAGGTT-TTTGCT----T......................................................................................................................................................................................1811.001000100
...............................................................................................................................................................................................................................GTTGAAATCA-----------------TTTTAAGGAGTTTAATTT......................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................TTG-A-TC----GATTGAT-TGGTTGAT...............................2111.001000100
.....................................................................................................................................................................................................................................................................................GGTTG-A-TC----GATTGAT-TGGTTGATG..............................2411.001000001
...........................................................................................................................................................................TGC-----AGAAAT--T-TGA--GA--CGAACTTG-----TGT............................................................................................................................2611.001000001
........................................................................................................................................................................................................................................................................................................AT-TGGTTGATGGGTGGGTG------------------G...2011.001000001
.......................................................................................................................................................................................AT--T-TGA--GA--CGAACTTG-----TGTGT..........................................................................................................................2111.001100000
......TGTAGACCGGCCGGGATCCGTTAAGC..................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................C----GATTGAT-TGGTTGATGGGTGG.........................2211.001010000
droGri2
CGGACATGTGGAACGTCCTGGATCTGCGAAATTAATAGCGCCCAAAAAGAGTAAGCATCTTGAT--TCTTGGA-ATAAATTACTAAAATGCCC-CTTT---TTTG-----T-CT-CTTTACAGG------AAACACTGCCAGTT-TTTGCT----TTT--GTTGTT----TCGT-----GTGTAA--A-C---------AAATTTG-----TGTGTAAT-TTTGTTGAATTC----------------ATTTTTAAGGAGTTTAATTTT-CGCTTGGGTTGC-TTTCATA-AATTGAT-TG----ATGATTGGTTGGGTTATCGTTTGGGGTGGAGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CGGTCTTGTGGAGCGTCCCGGCTCCGCAAAGCTCATAGCACCTAAAAAGAGTAAGCATTCCAG--ACAA---ACGAGCTTTATTAA--TCTTG-TTTTTTTCT-----TTT-TC-ATTCACAGA--------AATTGGATGGTT-TTTGCT----TTT--GTTGTG----TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............TCCCGGCTCCGCAAAGCTCATAGCACC........................................................................................................................................................................................................................................................................................................2711.00101000
.....................................................................................................................................ATTGGATGGTT-TTTGCT----T......................................................................................................................................................................................1811.00100010
dp5
CGGCCACGTGGAGCGACCAGGAGCGGCCAAGCTGATCGCTCCCAAAAAGAGTAAGCATCTCCTATTCCA---AACTTCCTTACTAA--TCCCC-TTTTCT----CTCAGCGTTT-ATTCACAGGTCG-TCGTATATTGGTGGTT-TTTGCTACA-TTT--TTT--TTTTGTCGATTCAGT-----TATCAGAAAAC--CGTG-TTT-----TCTGTATTATTTGTTGATCT--A----------TTCCCGATTGAAGGTGTTTAATTCT--AGCTGGGGGGCAG-TTTCACGA-------C----------AA------------TTGGACTAAATTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................AAGGTGTTTAATTCT--AGCTGGGG...........................................................2311.0010000000001
..........................................................................................................................................................................................................................................................................TCT--AGCTGGGGGGCAG-TTTCACGA-------C----------...........................2511.0010000001000
.GGCCACGTGGAGCGACCAGGAGC..........................................................................................................................................................................................................................................................................................................................2311.0010100000000
.GGCCACGTGGAGCGACCAGGAG...........................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................ATCGCTCCCAAAAAGAGTA.............................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................GTATTATTTGTTGATCT--A----------TTCCCGAT......................................................................................2611.0010010000000
droPer2
CGGCCACGTGGAGCGACCAGGAGCGGCCAAGCTGATCGCTCCCAAAAAGAGTAAGCATCTCCTATTCCA---AACTTCCTTACTAA--TCCCC-TTTTCT----CTCAGCGTTT-ATTCACAGGTCG-TCGTATATTGGTGGTT-TTTGCTACATTTT--TTT--TTTTGTCGATTCAGT-----TATCAGAAAAC--CGTG-TTT-----TCTGTATTATTTGTTGATCT--A----------TTCCCGATTGAAGGTGTTTAATTCT--AGCTGGGGG----------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................CACAGGTCG-TCGTATATTGGT......................................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................TTGTCGATTCAGT-----TATCAGAA.................................................................................................................................................2111.001001000
..................................................................................................................................................................T--TTTTGTCGATTCAGT-----TATCAG...................................................................................................................................................2211.001010000
.................................................................................................................................................................................................AAC--CGTG-TTT-----TCTGTATTATTTG..................................................................................................................2311.001001000
..................................................................................................................................................................T--TTTTGTCGATTCAGT-----TATCAGA..................................................................................................................................................2311.001100000
.GGCCACGTGGAGCGACCAGGAGC..........................................................................................................................................................................................................................................................................................................................2311.001010000
.....................AGCGGCCAAGCTGATCGCT..........................................................................................................................................................................................................................................................................................................1911.001100000
droAna3
CGGTCATGTGGAGCGGCCCGGCGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCATCCCGT--TGTC---AGAATCCCTACTAA--TACTT-TTCTTT-CTTT-------TCGTTCCACAGCCCA-GGA----CTGGTGGTT-TTTGCT----TTT--GTTG--------AA-----TTG-A---C-TGAAAGT--CACG-T-------TATGTATTATTTGTTAATCTTTT-CGCACTCGTTTCGAGACTGAAGGTGTTTACT-TT--GCTTCGGGCGG--------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................CGAGACTGAAGGTGTTTACT-T......................................................................2112.002000002
.................................................................................................................CGTTCCACAGCCCA-GGA----CTGG.......................................................................................................................................................................................................2112.002200000
..............................................................................................................................................................................................................................................................AAGGTGTTTACT-TT--GCTTCGGGC..........................................................2311.001010000
....................................................................................................................TCCACAGCCCA-GGA----CTGGTGG....................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................C-TGAAAGT--CACG-T-------TATGTATTATTT...................................................................................................................2511.001001000
..............GGCCCGGCGCCGCCAAGCTGA...............................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................TTTGCT----TTT--GTTG--------AA-----TTG-A---C-T....................................................................................................................................................2111.001000010
.................................................................................................................................................................................................................................................CGTTTCGAGACTGAAGGT...............................................................................1811.001010000
.....................................................................................A--TACTT-TTCTTT-CTTT-------TCGT..............................................................................................................................................................................................................................2011.001001000
............................................................................................................................................................................................................................................GCACTCGTTTCGAGACTGAAGGT...............................................................................2311.001010000
droBip1
CGGTCACGTGGAGCGGCCCGGTGCCGCTAAGCTGATAGCACCCAAAAAGAGTAAGCATCCTTAT--GTC---AGAAGCCCTACTAA--TACTT-TGCTTT-CTTT-------TCATTCCACAGCCCA-GGA----CTGGTGGTT-TTTGCT----TTT--GT--------TCAA-----TTG-A---C-TGAAAGTCTCG---T-------TATGTATTATTTGTTAATCTTTT-CGCACTCGTTTGGAGACTGAAGGTGTTTACT-TT--GCTTCGGGTGG-G--CTAA-AATTTAA-TG----AGTCGTGTGTG---------------------GSizeHit CountTotal NormTotal
No Reads
droKik1
GGGCCATGTGGAGCGGCCGGGAGCAGCCAAGCTGATCGCGCCCAAAAAGAGTAAGCATTTG-A-TTATG---AGAAACCCTATTAA--CGATC-TCTTTT----TCTTGTT-CT------TGTTTCA-GGA-TCTTTGGTGGTT-TTTGCT----TTTTTGTG--T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGGACATGTGGAGCGGCCCGGAGCCGCCAAGCTGATTGCACCCAAAAAGAGTAAGTATCTG-T-CTTTG---AGAAACCCTACTAA--CGCTC-TTTTCC----TTCTGTT-TCAATTCGCAGCCCT-GCAGACTTTGGTGGTT-TTTGCT----TTT--GTA--T----TTGG-----TCGGAG--T-CGAAAGT--CGTACTCC-----AGCGTATTATTTGTTGATCTCTC-----------------TTCAAGGTGTTTAATTTT--GCTTGGGGCGG--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGGACATGTGGAGCGGCCCGGAGCCGCCAAACTGATTGCGCCCAAAAAGAGTAAGCATCCG-A-TTTCG---AAAAACCCTACTAA--TGCTC-TCCTTC-TT-TTCCATT-CCATTTCACAGCGCTCGGAGTCTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----TCGGAGTCT-CGAAAGTCTCGTACTCC-----GCCGTATTATTTT------T-----------------CTCCTCAAGGTGTTTAATTTT--GCTTGGGATGG--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGGACATGTGGAGCGGCCCGGAGCCGCCAAACTGATTGCGCCCAAAAAGAGTAAGCATCTG-A-TTTCG---AGTGATCCTACTAA--TGCCC-TTTCTT----TTCTATT-TCATTTCACAGCCCC-GGAGTCTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----TCGGAG--T-CGAAAGT--CGTACTCC-----GCCGTATTATTTGTTCATCTCTC----------TTCTCTCCTCAAGGTGTTTAATTTT--GCTTGGGATGG-G-TCTTA-AATT-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGGACACGTGGAGCGGCCTGGAGCCGCCAAGCTGATTGCGCCCAAGAAGAGTAAGCATGCG-A-CTTCG---AGAAACCCTACTAA--TGCTC-TCTCCT----CTCTACT-TTACTCCACAGCCCA-GCAGACTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----ACGGAG--T-CGAA-GTATCGAGCTCC-----GCCGTATTATTTGTTGATCTCAC-----------TTCTCCCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGGACATGTGGAGCGGCCTGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCATTCCGT--ACCG---AGAAACCCTACTAA--TGGTT-TTCTTT-CTTA-----T-CTATTTCACAGCCCTCGAAGAACTTGGTGGTT-TTTGCT----TTT--GTG--TTGTATCGA-----TCGGAGTAT-CGAAAGTCTCGAACTCC-----GCCGTATTATTTGTTGATCTCTCTCACACACTTTTCC--CATCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGGCCATGTGGAGCGGCCCGGAGCCGCCAAGCTGATCGCACCCAAAAAGAGTAAGCATTTG-A-TTTCG---AGAAATCCTATTAA--TGTTC-TTTCTT----TTCTAAT-TTTCTTCACAGCCCT-GGAGACTTTGGTGGTT-TTTGCT----TTT--GTG--T----TCGA-----TCGGAG--T-CGAATAT--CGTACTCC-----GCCGTATTATTTGTTGATCTCTC---------------CTCTCAAGGTGTTTAATTTT--GCTTGGGGTGG-G-TCTTA-AATTAA-----------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCT---AGAATCACTATTAA--TGCTC-TTCTCT--------ATT-TTATTCCACAGCCCA-AGA-ACTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-CGAATGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCCA----------TTCCATTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT------------------------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................GA-ACTTTGGTGGCT-TTTGCT----.......................................................................................................................................................................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
.......................................GCCCAAAAAGAGTAAGCAACAG-A...................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ATTTGTTGATCTCCA----------TTCCATTCTC....................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CTGATAGCGCCCAAAAAGA................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................T----TTT--GTT--T----TCGA-----TCGGAG--T-CGAA.................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................CCAAAAAGAGTAAGCAACAG-AT--GCT---AG........................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATGTGGAGAGGCCCGGAGC..........................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-CGAA.................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................TGCT----TTT--GTT--T----TCGA-----TCGGAG--.......................................................................................................................................................2112.0020000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGTAAGCAACAG-AT--GCT---AG........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..GACATGTGGAGAGGCCCGGAGC..........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....ATGTGGAGAGGCCCGGAG...........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTGATCTCCA----------TTCCATTCTCAAGGT...............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGTGGAGAGGCCCGGAGCAA........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ATTTGTTGATCTCCA----------TTCCATTC......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................T----TCGA-----TCGGAG--T-CGAATGT--CGAACT......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTTAATTTT--GCTTGGGGCG.........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TCGGAG--T-CGAATGT--CGAACTC.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CACAGCCCA-AGA-ACTTTGGTGGCT-TT...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGCTGATAGCGCCCAAAAAGAGT..............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TT--GCTTGGGGCGG-G-TCTTA-A..............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TATTTGTTGATCTCCA----------TTCCATTCTC....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GTT--T----TCGA-----TCGGAG--T-CGAATGT--CGAACTC.....................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................GCT----TTT--GTT--T----TCGA-----TCGGAG--T-.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................TCACTATTAA--TGCTC-TTCTCT--------ATT-TTA...............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................T----TTT--GTT--T----TCGA-----TCGGAG--T-CGAATG...............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........GGAGAGGCCCGGAGCCGCC......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CCACAGCCCA-AGA-ACTTTGGTGGCT-TT...............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................T--------ATT-TTATTCCACAGCCCA-AGA-ACT...........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................TTCCATTCTCAAGGTGTTTAATTTT--...................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................T----TCGA-----TCGGAG--T-CGAATGT--CGAACTC.....................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................GCCCA-AGA-ACTTTGGTGGCT-.................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TGTTGATCTCCA----------TTCCATTCTCAAGG................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ATTTGTTGATCTCCA----------TTCCATTCT.....................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCCAAGCTGATAGCGCCCAA.....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GAATGT--CGAACTCC-----GCCGTATTAT.....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGACATGTGGAGAGGCCCGG.............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGTGGAGAGGCCCGGAGCCGC.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CATGTGGAGAGGCCCGGAGCCGC.......................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................TTATTCCACAGCCCA-AGA-ACT...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................TTTAATTTT--GCTTGGGGCGG-.......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TTTGTTGATCTCCA----------TTCCATT.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CA----------TTCCATTCTCAAGGTGTTTAATTTT--GC.................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CACTATTAA--TGCTC-TTCTCT--------A.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........TGGAGAGGCCCGGAGCCGCCAAGC..................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGCGCCCAAAAAGAGTAAGC..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................T-TTATTCCACAGCCCA-AGA-ACTTTGGT......................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GATCTCCA----------TTCCATTCTCAAG.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCCAAGCTGATAGCGCCCA......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...ACATGTGGAGAGGCCCGG.............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................GAATGT--CGAACTCC-----GCCGT..........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................AGAGTAAGCAACAG-AT--GC..............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGATCTCCA----------TTCCATTCTCAAGGTGT.............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AAGGTGTTTAATTTT--GCTTGGGGCGG-.......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGACATGTGGAGAGGCCCGGA............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.............AGGCCCGGAGCCGCCAAGCTG................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GCT-TTTGCT----TTT--GTT--T----TCGA-----TT.............................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCC---AGAATCACTATTAA--TGCTC-TTCTCT--------ATT-TT-TTCCACAGCCCA-ACA-ACTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-CGAATGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCCA----------TTCCATTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT------------------------------------------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................T----TTT--GTT--T----TCGA-----TCGGAG--T-CGAAT................................................................................................................................................2412.00200200000000000000
...........................................................................................................................................................................CGA-----TCGGAG--T-CGAATGT--CGAACTCC-----GCC............................................................................................................................2811.00100010000000000000
......................................................................................................................................................................................................CGAACTCC-----GCCGTATTATTTGT.................................................................................................................2211.00100010000000000000
............................................................................................................................................GGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGA..........................................................................................................................................................2611.00100010000000000000
..............................................AAGAGTAAGCAACAG-AT--GC..............................................................................................................................................................................................................................................................................1911.00100000000000100000
.....................................................................................................................................................................T----TCGA-----TCGGAG--T-CGAATGT--CGAACTC.....................................................................................................................................2611.00100000001000000000
................................................................................................................................ACA-ACTTTGGTGGCT-TTG..............................................................................................................................................................................................1811.00100000000001000000
...............GCCCGGAGCCGCCAAGCT.................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...........AGAGGCCCGGAGCCGCCA.....................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
droSec2
GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCC---AGAATCACTATTAA--TGCTC-TTCTCT--------ATT-TT-TTCCACAGCCCA-ACA-ACTTTGGTGGCT-TTTGCT----TTT--TTT--T----TCGA-----TCGGAG--T-CGAATGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCCA----------TTCCATTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT------------------------------------------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................TTAATTTT--GCTTGGGGCGG-.......................................................1911.0010010
........................................................................................................................................................................................G--T-CGAATGT--CGAACTCC-----GCCGT..........................................................................................................................2211.0010010
......................................................................................................................................................................................................................................................CCATTCTCAAGGTGTTTAATTTT--GC.................................................................2511.0010001
............................................................................................................................................................TT--TTT--T----TCGA-----TCGGAG--T-CGAATGT--C...........................................................................................................................................2511.0011000
droYak3
GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAAAGTAAGCAACTG-AT--GCG---AGAATCCATACTAA--TGCTC-TTCTCT--------ATT-TTATTCCACAGCCCA-GCA-GCTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAT--T-CGAAAGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCTA----------TTCCCTTCTCAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATTAATATA----------AA------------TAGTGCAGAAGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....ATGTGGAGAGGCCCGGAGCCGCCA.....................................................................................................................................................................................................................................................................................................................2411.00100000010000
.............................................................................................................................................................................................................................TTGTTGATCTCTA----------TTCCCTTCTCAAG.................................................................................2611.00110000000000
............GAGGCCCGGAGCCGCCAAGC..................................................................................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................................................................GGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGG...........................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................................................................................TTAATTTT--GCTTGGGGCGG-G-TT...................................................2211.00100100000000
.............................................................................................................................................GCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAT--T-C....................................................................................................................................................2811.00100000010000
.........................................................................................................................................GGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGG...........................................................................................................................................................2811.00100000010000
...................................................................................................................................................................................................................................................................................GGGGCGG-G-TCTTA-AATTAAT........................................2011.00101000000000
droEre2
GGGACATGTGGAGAGGCCCGGAGCCGCCAAGCTGATAGCGCCCAAAAAGAGTAAGCAACAG-AT--GCG---AGAATCAAAACTAA--TGCTC-TTCTCT--------ATT-TTATTCCACAGCCCA-GCA-ACTTTGGTGGCT-TTTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-CGAAAGT--CGAACTCC-----GCCGTATTATTTGTTGATCTCTA----------TTCCCTTCTGAAGGTGTTTAATTTT--GCTTGGGGCGG-G-TCTTA-AATT-------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................TTTGCT----TTT--GTT--T----TCGA-----TCGGAG--T-C....................................................................................................................................................2511.0010000100

Generated: 05/19/2015 at 05:33 PM