ID:

dvi_12484

 Coordinate:

scaffold_12963:18565404-18565554 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.8 -21.7 -21.4

Flybase annnotation

exon [dvir_GLEANR_519:1]; CDS [Dvir\GJ19829-cds]; intron [Dvir\GJ19829-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCGGCGGAACTGCTCAAAGTTGACAAAATTAAATTCATTAAGACGGAGGGTCTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAGAACAGCAAACAACAGCAACAACAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACATACGCCAACTCATAGTCCGCAACTGGAGACAACAGGTGAGAAAAGTCATC
**************************************************(((..((((..((.((((((...(((((...)))))...))))))))..)))).))).........*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 V116
male body		 SRR060664
9_males_carcasses_total
 SRR060657
140_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060665
9_females_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR1106729
mixed whole adult body
..................................................GTCTAACATTCGCATTGCTGGC................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GGCAAGTATGTGTCGATTTCGTGGTT....................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................TTAAGACGGAGGGTCTAACATTCGC............................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GTATGTGTCGATTTCGTGGTT....................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GTATGTGTCGATTTCGTGGTTGT..................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TACGCCAACTCATAGTCCG............................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGGACGGTTTAACATTCGC............................................................................................................................................................................................ 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GGCGGAACTGCTCAAAGT...................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CTACAAAAACAAGAACAAGAACAGT.......................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTCCGCAACTGGAGACAACAGGGCTG.......... 26 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................CGGACGGTGTAACCTTCGC............................................................................................................................................................................................ 19 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGGGTAAATTTCGTGGTTGTC.................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ATCAGCAAACAACAGCAACA............................................................................................ 20 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................CGTAGGGTTTAACATTCGC............................................................................................................................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GATACAACAGGTAAGAACAGT.... 21 3 5 0.40 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................CGGACGGTTTAACCTTCGC............................................................................................................................................................................................ 19 3 8 0.38 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGTACGGTCTAACCTTCGC............................................................................................................................................................................................ 19 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGCTGGCGGGGCCCATGATCC..................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGGAGGGTGTAAACTTCGC............................................................................................................................................................................................ 19 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AACAACATCAGCAAACAACAGCAACAA........................................................................................... 27 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AACAGCAGCAGCAGCAACAACAACAACAT................................................. 29 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGGACCGTGTAACATTCGC............................................................................................................................................................................................ 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GACAAGCGCCAAGTATCTGT.................................................................................................................................................... 20 3 16 0.13 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................ATTCATTTATACGGAGGG........................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TTTCGTGGTTGTCGTTAAGAA............................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................CGTACGGTTTAACATTCGC............................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................TCATGGTTGTCTCTAGAAAA........................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................CGGACCGTTTAACATTCGC............................................................................................................................................................................................ 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AACAACAACAGCAGCAGCAGCAACAAC......................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTGGTGGTTGTCGCT................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................AACAACAGCAGCAGCAGCAACAACAAC...................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................AACAGCAGCAGCAGCAACAACAAC...................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GCAACAACAACAACAACAACAACAGCA....................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AACAACAACAACAACAGCAGCAGCAGC............................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................ACAACAGCAACAACAACAACAACAACA............................................................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGCAGCAGCAACAACAACAAC................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCGCCGCCTTGACGAGTTTCAACTGTTTTAATTTAAGTAATTCTGCCTCCCAGATTGTAAGCGTAACGACCGCCCGGGGTACCCGGTTCGCCGTTCATACACAGCTAAAGCACCAACAGCGATGTTTTTGTTCTTGTTCTTGTCGTTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTCGTCGTCGTCGTTGTTGTTGTTGTATGCGGTTGAGTATCAGGCGTTGACCTCTGTTGTCCACTCTTTTCAGTAG
***************************************************************************************************************************************(((..((((..((.((((((...(((((...)))))...))))))))..)))).))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 GSM1528803
follicle cells		 M028
head
 M047
female body
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body
..................................................................................................................................................................................................TTGTTGTATGGGGTTGAGTGT.................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................GTTGTTGTTGTCGTCGTCGTC................................................................ 21 0 20 0.35 7 0 7 0 0 0 0 0 0 0
.....TCCTTGCCGGGTTTCAAC.................................................................................................................................................................................................................................... 18 3 20 0.15 3 0 0 1 0 0 1 0 1 0
...............................................................................................................................................CGTTTGTTGTCGTGATTGT......................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0
......CCTTGCCGGGTTTCAACGG.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TTGTTGTTGTCGTCGTCGTCGT.............................................................. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................TTGTCGTTGTTGTTGTTGT................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................TTTTTCTTGTCATTTGTTG................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:18565354-18565604 - dvi_12484 CGCGGCGGAACTGCTCAAAGTTGACAAAATTAAATTCATTAAGACGGAGGGTCTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAGAACAGCAAACAACAGCAACAACAACAACAACAA------CAACA------GC------------------------AGCAGCAGCAACAAC---------AACAACATACGCCAACTCATAGTCCGCAA-------------------------------------C------------TGGAGACAACAGGTGAGAAAA--GT---------------CAT--C
droMoj3 scaffold_6500:6086386-6086665 + CGCGGCAGCTCTGCTCAAAGTTGAGAAAATTAAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAGCAAGAACAGCAAACAACAACAACAACAACAACAGCAG------CAACA------AC---------------------------------AACAAC---------AACAACAAACGCCGACTAAAAGTCCGCAACA-------------ACAACAACACTATCAGC---AGC------------TGGAGACAACAGGTGAGAAAAAAAAAAAGAAGAATAAACTGAA--C
droGri2 scaffold_15252:6513140-6513399 - CGCGGCGGCTTTGCTTAAAGTTGACAAAATTAAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTTGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAATAGCAAGCAACAACAGCAACAACAACAACAG------CAGCA------GC---------------------------A---ACAACAAC---------AACAACAAACACCAACGCATAGTCCGCAA-------------------------------------C------------AGGAGACAACAGGTGAGAAAAACAAACGAAATA--AAACTCAT--A
droWil2 scf2_1100000004585:3171040-3171322 + CGCGGCAGCATTGCTTAAGGTCGACAAAATTAAATTCATTAAAACGGAGGGTTTAACATTTGCGTTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAGAGCAACAAGCAGCAGCAACAACAACAGCAGCAG------CAACA------GC------------------------AGC---------------------AGCAGCAAACACCAACCC-CAATACACAGTTCCCCCCACCACCAACAACAACAGTCTGAAATA---TCAGCAGCATCATCCACAACAACAGGTGAGAGAAACGC---------------G-----
dp5 4_group3:3736298-3736479 - TGCTGCCGAATTGCTCAAGTTCGATAAAATTCAATTCATTAAAACGGAGGGTCTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAATAAGAACAGCAACAAGCAGCAGCAGCAGCAACAACAG------CAACA------AC------------------------AGC--------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:5215576-5215822 - TGCTGCCGAATTGCTCAAGTTTGATAAAATTCAATTCATTAAAACGGAGGGTCTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAATAAGAACAGCAACAAGCAGCAGCAGCAGCAACAACAG------CAACA------GC------------------------AAC---------------------AGCAGCCAACACCTTTACCCAGTCCCCAATT-------------GCAACATCAGTCCGAGG------------------CGGCAGCAACAGGTGAG-----------------------------
droAna3 scaffold_12916:2454523-2454786 - CGCGGCTGGATTGCTCAAGTTTGACAAAATTCAATTCATTAAGACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAGAGCAACAAACAACATCAGCAACAGCAACAGCAG------CAGCA------AC---------------------------A---ACAGCAAC---------AGAATGAAACACCTACCCATAGTCCCCAGTT-------------TCAGCATCATTCTGAGATAATCC------------CAGCCACAACAGGTGAGAGGG-------------------G-----
droBip1 scf7180000396430:396547-396803 - CGCGGCTGGATTGCTCAAGTTTGACAAAATTCAATTCATTAAGACGGAGGGTTTAACATTCGCGTTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAGAGCAACAAACAGCAGCAACAACAGCAGCAACAG------CAACA------GC------------------------AGC---------------------AGAATGAAACACCCACCCATAGTCCCCAGTT-------------TCAGCATCATTCTGAGATAATCC------------CGGCAACAACAGGTGAGAGA---G----------------------
droKik1 scf7180000302221:80587-80878 + CGCGGCGGCATTGCTCAAAATTGACAAGATTCAATTCATTAAAACGGAGGGTCTAACATTTGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGTTACAAAAATAAGAATAAAAATAGTAAGCAACAACAACAACAACAGCAGCAG------CAGCA------GC---AGCAACAACAACC--TATA---AT---------AAC---------AACCA-CAACACCCAGCCACAGTCCACAGAT-------------ACAGCATCATCCTGAAATAATCC---CCGGAGCCTCAGCAACAACAGGTGAGAGAA--AT---------------GGAATC
droFic1 scf7180000454059:394757-395049 + CGCAGCGGAGTTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTTGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAAACCAAAAGCAGCAAGCAACATCAGCAGCAGCAACAGCAA------CAGCA------AC---AGCAACAACAACAACTACAGTATCA---GCAACAAC---------AACAACAAACACCCACCCATAGTCCTCAGAT-------------TCAACATCATTCTGAGATAATAC------------CAGCTACAACAGGTGAGAAAA--GT---------------GGC--C
droEle1 scf7180000491338:2519910-2520186 - CGCGGCTGAATTGCTCAAGTTTGACAAAATTCAGTTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAAAACAGCAAGCAACAACAACAACAGCAGCAGCAA------CAGCA------GC---AGCAACAACAACAG------CAAC---------AAC---------AGCCAGCAACACCCACCAACAGTCCTCAGAT-------------TCAGCATCATTCTGAGATAATAC------------CAGCAACAACAGGTGAGAGA---GT---------------G-----
droRho1 scf7180000778617:73485-73770 - CGCGGCTGAATTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAAAACAGCAAGCAGCAACAACAACAGCATCAGCAG------CAACA------ACAACA---------ACAACAACAGTATCA---GCAACAGC------AACAACAACCAACACCCACACATAGTCCTCAGAT-------------TCAACATCATTCTGAGATAATCC------------CAGCAACAACAGGTGAGAAA---GT---------------G-----
droBia1 scf7180000302422:5137312-5137582 + CGCGGCTGAGTTGCTCAAGTTCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAAAACAAAAGCAGCAAGCAACATCAGCAGCAGCAACAACAA------GAGCA------GC------------------------AACA---GCAGCAGC---------AACAGCAAACACCGACCCACAGTCCTCAGAT-------------ACAGCATCATTCTGAAGTAATCC------------CAGCTACAACAGGTGAGAAA---GT---------------GGC--A
droTak1 scf7180000415867:836163-836442 - CGCGGCTGAATTGCTCAAGTTTGACAAAATCCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAACAGCAACAGCAACAGCAG------CAGCA------AC---------AACAAGAGCAACAGCAACA---GCAGCAAC---------AACACCAAACACCAACCCACAGTCCTCAGAT-------------TCAGCATCATTCTGAGATAATAT------------CAGCTACAACAGGTGAGAAA--------------------------
droEug1 scf7180000409447:490242-490527 - CGCGGCCGAATTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAACAGCAAACAACAACAGCAGCAGCAGCAGCAACAACAACA------------------------ACAGCAACAGCATCA---GCAACAACAAC---AGCAACAACTAACACCAACCCATAGTCCTCAGAT-------------ACAGCATCATTCTGAGATAATCC------------CATCTACAACAGGTGAGAAC---GT---------------T-----
dm3 chr2L:18546520-18546796 - CGCGGCTGAATTGCTCAAGATCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAGCAGCAACAACAGCAGCAG------CAACA------GCAACAGCAACAGCAACA---------TCA---ACAACAGC---------AGCAGCAAACACCAAGTCATAGTCCTCAGAT-------------TCAGCATCATTCTGAAATAATCC------------CAGCTACAACAGGTGAG-----------------------------
droSim2 2l:18107672-18107972 - dsi_2640 CGCGGCTGAATTGCTCAAGTTCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAGCAGCAGCAACAGCAGCAG------CAACAGCAGCAGC---AGCAACAGCAACATCAACAGCAGCA---GCAGCAAC---AGCAAGCGCAGCAAACACCAAGCCATAGTCCTCAGAT-------------TCAGCATCATTCTGAAATAATCC------------CAGCTACAACAGGTGAGAAT---GT---------------G-----
droSec2 scaffold_7:2172667-2172946 - dse_1524 CGCGGCTGAGTTGCTTAAGTTCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAGCAGCAGCAACAGCAGCAG------CAACA------TC------------AACAG------CAGCA---GCAGCAAC---AGCAAGCGCAGCAAACACCAAGCCATAGTCCTCAGAT-------------TCAGCATCATTCTGAAATAATCC------------CAGCTACAACAGGTGAGAAT---GT---------------G-----
droYak3 2R:5063843-5064121 - dya_456 CGCGGCTGAATTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAACAGCAAGCAACAACAGCAGCAACAGCAGCAA------CAGCA------GC---AACAACAGCAA------CAGCAGC---------------------CGCAGCAAACACCAACCCATAGTCCTCAGAT-------------TCAGCATCACTCTGAAATAATCC------------CAGCTACAACAGGTGAGAAA---GT---------------GGCAAG
droEre2 scaffold_4845:5724126-5724403 + der_1055 CGCGGCTGAGTTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAACAGCAAGCAGCAGCAGCAGCAGCAGCAGCAG------CAACA------GC---AGCAG---------------CAGCA---GCAGCAAC---------AGCAGCAAACACCAACCCATAGTCCTCAGAT-------------TCAGCATCACTCTGAAATAATAC------------CAGCTACAACAGGTGAGCAA---GT---------------GGCAA-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGCGGCGGAACTGCTCAAAGTTGACAAAATTAAATTCATTAAGACGGAGGGTCTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAGAACAGCAAACAACAGCAACAACAACAACAACAA------CAACA------GC------------------------AGCAGCAGCAACAAC---------AACAACATACGCCAACTCATAGTCCGCAA-------------------------------------C------------TGGAGACAACAGGTGAGAAAA--GT---------------CAT--CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................GTCTAACATTCGCATTGCTGGC....................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................GGCAAGTATGTGTCGATTTCGTGGTT........................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
......................................TTAAGACGGAGGGTCTAACATTCGC.............................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................GTATGTGTCGATTTCGTGGTT........................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................GTATGTGTCGATTTCGTGGTTGT......................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................TACGCCAACTCATAGTCCG...................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...GGCGGAACTGCTCAAAGT.......................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CTACAAAAACAAGAACAAGAACAGT...........................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AACA------GC------------------------AGCAGCAGCAACAAC---------AACAACAT.....................................................................................................................2950.201001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AACAA------CAACA------GC------------------------AGCAGCAGCAACAAC---------.............................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AA------CAACA------GC------------------------AGCAGCAGCAACAAC---------AAC..........................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................AACA------GC------------------------AGCAGCAGCAACAAC---------AAC..........................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GCAACAACAACAACAACAA------CAACA------GC------------------------A....................................................................................................................................................27200.051000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................AACAACAACAA------CAACA------GC------------------------AGCAGCAGC............................................................................................................................................27200.051000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................ACAACAGCAACAACAACAACAACAA------CA........................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AGCAGCAGCAACAAC---------AACAAC.......................................................................................................................21200.051000000000000000100000000000000000000000000000000000000000000000
droMoj3
CGCGGCAGCTCTGCTCAAAGTTGAGAAAATTAAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAGCAAGAACAGCAAACAACAACAACAACAACAACAGCAG------CAACA------AC---------------------------------AACAAC---------AACAACAAACGCCGACTAAAAGTCCGCAACA-------------ACAACAACACTATCAGC---AGC------------TGGAGACAACAGGTGAGAAAAAAAAAAAGAAGAATAAACTGAA--CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................GCTACAAAAACAAGAGCAAGA................................................................................................................................................................................................................................2111.001000001
...........................................................................................GCAAGTATGTGTCGATTTCGTGGTT........................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................ACAGCAG------CAACA------AC---------------------------------AACAAC---------AAC..........................................................................................................................23200.051000010
droGri2
CGCGGCGGCTTTGCTTAAAGTTGACAAAATTAAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTTGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAATAGCAAGCAACAACAGCAACAACAACAACAG------CAGCA------GC---------------------------A---ACAACAAC---------AACAACAAACACCAACGCATAGTCCGCAA-------------------------------------C------------AGGAGACAACAGGTGAGAAAAACAAACGAAATA--AAACTCAT--ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CGCGGCAGCATTGCTTAAGGTCGACAAAATTAAATTCATTAAAACGGAGGGTTTAACATTTGCGTTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAGAGCAACAAGCAGCAGCAACAACAACAGCAGCAG------CAACA------GC------------------------AGC---------------------AGCAGCAAACACCAACCC-CAATACACAGTTCCCCCCACCACCAACAACAACAGTCTGAAATA---TCAGCAGCATCATCCACAACAACAGGTGAGAGAAACGC---------------G-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................ACATTTGCGTTGCTGGCGG..................................................................................................................................................................................................................................................................................................1911.00110000
......................................................AACATTTGCGTTGCTGGCGGGCC...............................................................................................................................................................................................................................................................................................2311.00110000
..........................................................................................................................................................................................................................................................................................AACAACAACAGTCTGAAATA---TC.........................................................2211.00100010
.....................................................TAACATTTGCGTTGCTGGCG...................................................................................................................................................................................................................................................................................................2011.00100100
........................................AAAACGGAGGGTTTAACATTT...............................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................................................AAGTATGTGTCGATTTCGTGGTTGTC.....................................................................................................................................................................................................................................................2611.00100010
.............................................................................................AAGTATGTGTCGATTTCGTGGTTG.......................................................................................................................................................................................................................................................2411.00100100
................................................................................................................................ATAAGAACAAGAGCAACAAGCAGCAGC.................................................................................................................................................................................................................2711.00100100
...............................................................................................................................................................ACAACAGCAGCAG------CAACA------...............................................................................................................................................................................18200.20400040
........................................................................................................................................................AGCAACAACAACAGCAGCA.................................................................................................................................................................................................19200.15300030
..........................................................................................................................................................CAACAACAACAGCAGCAG------..........................................................................................................................................................................................18200.15300030
..................................................................................................................................................................ACAGCAGCAG------CAACA------GC------------------------A....................................................................................................................................................18200.10200020
..................................................................................................................................................AGCAGCAGCAACAACAACAGCA....................................................................................................................................................................................................22200.10200020
....................................................................................................................................................CAGCAGCAACAACAACAGC.....................................................................................................................................................................................................19200.10200020
......................................................................................................................................................................................A------GC------------------------AGC---------------------AGCAGCAAACAC.................................................................................................................18140.07100001
...........................................................................................................................................................................G------CAACA------GC------------------------AGC---------------------AGCAGCAAA....................................................................................................................20200.05100010
....................................................................................................................................................CAGCAGCAACAACAACAGCAG...................................................................................................................................................................................................21200.05101000
...........................................................................................................................................................AACAACAACAGCAGCAG------CAACA------GC------------------------.....................................................................................................................................................24200.05100010
......................................................................................................................................................................CAGCAG------CAACA------GC------------------------AGC---------------------AGCAGCA......................................................................................................................23200.05100010
.................................................................................................................................................................AACAGCAGCAG------CAACA------GC------------------------AGC---------------------.............................................................................................................................21200.05100001
..........................................................................................................................................................CAACAACAACAGCAGCAG------CAACA------...............................................................................................................................................................................23200.05100010
.........................................................................................................................................................GCAACAACAACAGCAGCAG------CA........................................................................................................................................................................................21200.05100010
..................................................................................................................................................AGCAGCAGCAACAACAACAGCAGC..................................................................................................................................................................................................24200.05100010
...................................................................................................................................................GCAGCAGCAACAACAACAGCAGCAG------..........................................................................................................................................................................................25200.05100010
.....................................................................................................................................................AGCAGCAACAACAACAGCAGCAG------CAA.......................................................................................................................................................................................26200.05101000
......................................................................................................................................................................CAGCAG------CAACA------GC------------------------AGC---------------------AGCAGCAA.....................................................................................................................24200.05100010
.............................................................................................................................................................CAACAACAGCAGCAG------CAACA------G..............................................................................................................................................................................21200.05101000
.....................................................................................................................................................AGCAGCAACAACAACAGCAGC..................................................................................................................................................................................................21200.05100010
..................................................................................................................................................AGCAGCAGCAACAACAACAGCAGCA.................................................................................................................................................................................................25200.05100010
.........................................................................................................................................................GCAACAACAACAGCAGCAG------CAACA------...............................................................................................................................................................................24200.05100010
...................................................................................................................................................................................AACA------GC------------------------AGC---------------------AGCAGCAAACACA................................................................................................................22200.05100010
..................................................................................................................................................................................CAACA------GC------------------------AGC---------------------AGCAGCAAA....................................................................................................................19200.05100010
.............................................................................................................................................................CAACAACAGCAGCAG------CAACA------GC------------------------.....................................................................................................................................................22200.05101000
dp5
TGCTGCCGAATTGCTCAAGTTCGATAAAATTCAATTCATTAAAACGGAGGGTCTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAATAAGAACAGCAACAAGCAGCAGCAGCAGCAACAACAG------CAACA------AC------------------------AGC--------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................TAAGAATAAGAACAGCAACAAGCAGCA................................................................................................................................................................................................................2712.0020000000200
..........................................................................................................................................GAACAGCAACAAGCAGCAGCAGCAGCAA......................................................................................................................................................................................................2811.0010100000000
........................................................................................................................................AAGAACAGCAACAAGCAGCA................................................................................................................................................................................................................2011.0010100000000
.............................................................................................AAGTATGTGTCGATTTCGTGGTTGTC.....................................................................................................................................................................................................................................................2611.0010100000000
............GCTCAAGTTCGATAAAATTCA...........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................CAACAAGCAGCAGCAGCAGC........................................................................................................................................................................................................2050.2010100000000
.................................................................................................................................................AACAAGCAGCAGCAGCAGC........................................................................................................................................................................................................19120.0810100000000
...............................................................................................................................................................GCAGCAACAACAG------CAACA------AC------------------------AG...................................................................................................................................................22200.0510100000000
..........................................................................................................................................................CAGCAGCAGCAACAACAG------CAACA------...............................................................................................................................................................................23200.0510100000000
..............................................................................................................................................................AGCAGCAACAACAG------CAACA------...............................................................................................................................................................................19200.0510100000000
droPer2
TGCTGCCGAATTGCTCAAGTTTGATAAAATTCAATTCATTAAAACGGAGGGTCTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAATAAGAACAGCAACAAGCAGCAGCAGCAGCAACAACAG------CAACA------GC------------------------AAC---------------------AGCAGCCAACACCTTTACCCAGTCCCCAATT-------------GCAACATCAGTCCGAGG------------------CGGCAGCAACAGGTGAG-----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................GGGTCTAACATTCGCATTGCTGGCGGG.................................................................................................................................................................................................................................................................................................2712.002000002
........................................................................................................GATTTCGTGGTTGTCGCTA.................................................................................................................................................................................................................................................1912.002200000
.............................................................................................AAGTATGTGTCGATTTCGTGG..........................................................................................................................................................................................................................................................2111.001010000
...............................................................................................GTATGTGTCGATTTCGTGGTTGTCGCTA.................................................................................................................................................................................................................................................2811.001000001
droAna3
CGCGGCTGGATTGCTCAAGTTTGACAAAATTCAATTCATTAAGACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAGAGCAACAAACAACATCAGCAACAGCAACAGCAG------CAGCA------AC---------------------------A---ACAGCAAC---------AGAATGAAACACCTACCCATAGTCCCCAGTT-------------TCAGCATCATTCTGAGATAATCC------------CAGCCACAACAGGTGAGAGGG-------------------G-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................GTTTAACATTCGCATTGCTGGCG...................................................................................................................................................................................................................................................................................................2311.001000010
.................................ATTCATTAAGACGGAGGGTTT......................................................................................................................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................................................................................................................................CTACCCATAGTCCCCAGTT-------------TCAGC............................................................................2411.001010000
.....................................................TAACATTCGCATTGCTGGCGG..................................................................................................................................................................................................................................................................................................2111.001000010
...................................................................................GCCAAGCGGCAAGTATGTGTCGAT.................................................................................................................................................................................................................................................................2411.001000010
....................................CATTAAGACGGAGGGTTTAACATTCGC.............................................................................................................................................................................................................................................................................................................2711.001000010
...................................................................................................GTGTCGATTTCGTGGTTGTC.....................................................................................................................................................................................................................................................2011.001100000
.................................................................................................ATGTGTCGATTTCGTGGTTGTCGCTA.................................................................................................................................................................................................................................................2611.001010000
.........................................................................................................................................................TCAGCAACAGCAACAGCAG------CAGCA------AC---------------------------A---..............................................................................................................................................2740.251000001
...................................................................................................................................................ACAACATCAGCAACAGCAAC.....................................................................................................................................................................................................2060.171010000
..............................................................................................................................................................AACAGCAACAGCAG------CAGC......................................................................................................................................................................................18200.153030000
................................................................................................................................................................CAGCAACAGCAG------CAGCA------AC---------------------------A---ACA...........................................................................................................................................23200.102000002
........................................................................................................................................................ATCAGCAACAGCAACAGCAG------C.........................................................................................................................................................................................21150.071010000
.............................................................................................................................................................CAACAGCAACAGCAG------CAGC......................................................................................................................................................................................19200.051000001
droBip1
CGCGGCTGGATTGCTCAAGTTTGACAAAATTCAATTCATTAAGACGGAGGGTTTAACATTCGCGTTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAGAGCAACAAACAGCAGCAACAACAGCAGCAACAG------CAACA------GC------------------------AGC---------------------AGAATGAAACACCCACCCATAGTCCCCAGTT-------------TCAGCATCATTCTGAGATAATCC------------CGGCAACAACAGGTGAGAGA---G----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGCGGCGGCATTGCTCAAAATTGACAAGATTCAATTCATTAAAACGGAGGGTCTAACATTTGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGTTACAAAAATAAGAATAAAAATAGTAAGCAACAACAACAACAACAGCAGCAG------CAGCA------GC---AGCAACAACAACC--TATA---AT---------AAC---------AACCA-CAACACCCAGCCACAGTCCACAGAT-------------ACAGCATCATCCTGAAATAATCC---CCGGAGCCTCAGCAACAACAGGTGAGAGAA--AT---------------GGAATCSizeHit CountTotal NormTotal
No Reads
droFic1
CGCAGCGGAGTTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTTGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAAACCAAAAGCAGCAAGCAACATCAGCAGCAGCAACAGCAA------CAGCA------AC---AGCAACAACAACAACTACAGTATCA---GCAACAAC---------AACAACAAACACCCACCCATAGTCCTCAGAT-------------TCAACATCATTCTGAGATAATAC------------CAGCTACAACAGGTGAGAAAA--GT---------------GGC--CSizeHit CountTotal NormTotal
No Reads
droEle1
CGCGGCTGAATTGCTCAAGTTTGACAAAATTCAGTTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAAAACAGCAAGCAACAACAACAACAGCAGCAGCAA------CAGCA------GC---AGCAACAACAACAG------CAAC---------AAC---------AGCCAGCAACACCCACCAACAGTCCTCAGAT-------------TCAGCATCATTCTGAGATAATAC------------CAGCAACAACAGGTGAGAGA---GT---------------G-----SizeHit CountTotal NormTotal
No Reads
droRho1
CGCGGCTGAATTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAGAACAAAAACAGCAAGCAGCAACAACAACAGCATCAGCAG------CAACA------ACAACA---------ACAACAACAGTATCA---GCAACAGC------AACAACAACCAACACCCACACATAGTCCTCAGAT-------------TCAACATCATTCTGAGATAATCC------------CAGCAACAACAGGTGAGAAA---GT---------------G-----SizeHit CountTotal NormTotal
No Reads
droBia1
CGCGGCTGAGTTGCTCAAGTTCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAACAAAAACAAAAGCAGCAAGCAACATCAGCAGCAGCAACAACAA------GAGCA------GC------------------------AACA---GCAGCAGC---------AACAGCAAACACCGACCCACAGTCCTCAGAT-------------ACAGCATCATTCTGAAGTAATCC------------CAGCTACAACAGGTGAGAAA---GT---------------GGC--ASizeHit CountTotal NormTotal
No Reads
droTak1
CGCGGCTGAATTGCTCAAGTTTGACAAAATCCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAACAGCAACAGCAACAGCAG------CAGCA------AC---------AACAAGAGCAACAGCAACA---GCAGCAAC---------AACACCAAACACCAACCCACAGTCCTCAGAT-------------TCAGCATCATTCTGAGATAATAT------------CAGCTACAACAGGTGAGAAA--------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGCGGCCGAATTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAACAGCAAACAACAACAGCAGCAGCAGCAGCAACAACAACA------------------------ACAGCAACAGCATCA---GCAACAACAAC---AGCAACAACTAACACCAACCCATAGTCCTCAGAT-------------ACAGCATCATTCTGAGATAATCC------------CATCTACAACAGGTGAGAAC---GT---------------T-----SizeHit CountTotal NormTotal
No Reads
dm3
CGCGGCTGAATTGCTCAAGATCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAGCAGCAACAACAGCAGCAG------CAACA------GCAACAGCAACAGCAACA---------TCA---ACAACAGC---------AGCAGCAAACACCAAGTCATAGTCCTCAGAT-------------TCAGCATCATTCTGAAATAATCC------------CAGCTACAACAGGTGAG-----------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................GGCCAAGCGGCAAGTATGTGTC....................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................CGGAGGGTTTAACATTCGA.............................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000
...................................................................................................................TGTCGCTACAAAAATAAGAACAAAAGC..............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GCGGGCCCCATGGGCCAAGCGG................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TTGCTGGCGGGCCCCATG..........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................GTGGTTGTCGCTACAAAA............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AATAAGAACAAAAGCAGC...........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TTCATTAAAACGGAGGGTTTAACA..................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................TCATTAAAACGGAGGGTTTAACATTCGCAT...........................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TGGCGGGCCCCATGGGCCAAGCGGCAAGT...........................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................GTGTCGATTTCGTGGTTGTG.....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTTAACATTCGCATTGCTGGCGGGC................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TCTGAAATAATCC------------CAGCTACAACAGGCC...............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GTTGTCGCTACAAAAATAA........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ATCC------------CAGCTACAACAGGTGGT-----------------------------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................CAAGCGGCAAGTATGTGTCG...................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................TATGTGTCGATTTCGTGGTTGT......................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................GTGTCGATTTCGTGGTTGTCGCTACA...............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................TTGCTGGCGGGCCCCATGGGCCAA....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATGGGCCAAGCGGCAAGTATGTGTC....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................ACA------GCAACAGCAACAGCAACA---------TCA---ACA...........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AAGTATGTGTCGATTTCGTGGTTGTCGC...................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TATGTGTCGATTTCGTGGTTGTCGC...................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................AAAGCAGCAAGCAACAGCA................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TCGTGGTTGTCGCTACAAAAATAAGAA.....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CAAACACCAAGTCATAGTCCTC..................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCGCATTGCTGGCGGGCCCCATGGGCCAA....................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGTCGCTACAAAAATAAGA......................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GAGGGTTTAACATTCGCATTGCTGGCGG..................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................GTATGTGTCGATTTCGTGGTTGT......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................TAACATTCGCATTGCTGGCGGGCCCCATG..........................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTGCTCAAGATCGACAAAATTCAA..........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TGCTGGCGGGCCCCATGGGCCAAGCGG................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TACAAAAATAAGAACAAAAGCAGCAAG........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CAAAAATAAGAACAAAAGCAGCAAG........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CATTCTGAAATAATCC------------CAGCTACAACAG..................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................GGCCAAGCGGCAAGTATGTGTCGAT.................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................AAAGCAGCAAGCAACAGCAGC..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................GCTACAAAAATAAGAACAAAAGCAGCAAGC.......................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATTCATTAAAACGGAGGG.........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CA---------TCA---ACAACAGC---------AGCAGCAAACACCAA..............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TTGCTCAAGATCGACAATC...............................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GCAACA---------TCA---ACAACAGC---------AGCAGCA......................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GCAGCAACAACAGCAGCAG------CAACA------G..............................................................................................................................................................................25150.4770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CAACA---------TCA---ACAACAGC---------AGCAGC.......................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
CGCGGCTGAATTGCTCAAGTTCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAGCAGCAGCAACAGCAGCAG------CAACAGCAGCAGC---AGCAACAGCAACATCAACAGCAGCA---GCAGCAAC---AGCAAGCGCAGCAAACACCAAGCCATAGTCCTCAGAT-------------TCAGCATCATTCTGAAATAATCC------------CAGCTACAACAGGTGAGAAT---GT---------------G-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................AAGTATGTGTCGATTTCGTGGTTGTCGC...................................................................................................................................................................................................................................................2811.00100010000000000000
....................................................................................................................................................................................................................AGCAGCA---GCAGCAAC---AGCAAGCG...........................................................................................................................2321.00200002000000000000
................................................................................................................................................................................................................................................................................................ATCATTCTGAAATAATCC------------CAGCTAC.......................................2511.00100010000000000000
droSec2
CGCGGCTGAGTTGCTTAAGTTCGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAGCAGCAAGCAACAGCAGCAGCAACAGCAGCAG------CAACA------TC------------AACAG------CAGCA---GCAGCAAC---AGCAAGCGCAGCAAACACCAAGCCATAGTCCTCAGAT-------------TCAGCATCATTCTGAAATAATCC------------CAGCTACAACAGGTGAGAAT---GT---------------G-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................GGCAAGTATGTGTCGATTTCGTGGTT........................................................................................................................................................................................................................................................2611.0010100
.......................................TAAAACGGAGGGTTTAACATTCGCATTG.........................................................................................................................................................................................................................................................................................................2811.0010100
..................................................................................GGCCAAGCGGCAAGTATGTGTC....................................................................................................................................................................................................................................................................2211.0010010
.....................................................................................................................................................................................................................................C---AGCAAGCGCAGCAAACA..................................................................................................................1820.5011000
.....................................................................................................................................................................................CA------TC------------AACAG------CAGCA---GCAGCAAC---A..................................................................................................................................2380.1310010
..........................................................................................................................................................................AG------CAACA------TC------------AACAG------CAGCA---GCAGCA........................................................................................................................................2580.1310010
...................................................................................................................................................................................AACA------TC------------AACAG------CAGCA---GCAGC.........................................................................................................................................21110.0910010
..........................................................................................................................................................................AG------CAACA------TC------------AACAG------CAGCA---G.............................................................................................................................................20130.0810010
.............................................................................................................................................................................................TC------------AACAG------CAGCA---GCAGCAAC---...................................................................................................................................20150.0710010
.............................................................................................................................................................................................TC------------AACAG------CAGCA---GCAGCAA.......................................................................................................................................19180.0610010
...............................................................................................................................................................GCAACAGCAGCAG------CAACA------TC------------.................................................................................................................................................................20200.0510010
.....................................................................................................................................................................................CA------TC------------AACAG------CAGCA---GCAGC.........................................................................................................................................19200.0510010
droYak3
CGCGGCTGAATTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAACAGCAAGCAACAACAGCAGCAACAGCAGCAA------CAGCA------GC---AACAACAGCAA------CAGCAGC---------------------CGCAGCAAACACCAACCCATAGTCCTCAGAT-------------TCAGCATCACTCTGAAATAATCC------------CAGCTACAACAGGTGAGAAA---GT---------------GGCAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................CGATTTCGTGGTTGTCGCT..................................................................................................................................................................................................................................................1912.00220000000000
............................................................................................CAAGTATGTGTCGATTTCGTGGTTGT......................................................................................................................................................................................................................................................2611.00100000010000
.............................................................................................AAGTATGTGTCGATTTCGTGGT.........................................................................................................................................................................................................................................................2211.00100000010000
....................................CATTAAAACGGAGGGTTTAACATTCGC.............................................................................................................................................................................................................................................................................................................2711.00100000010000
..................................................................................................................................................................................................................................................................................................CACTCTGAAATAATCC------------CAGCC.........................................2111.00100100000000
..................GTTTGACAAAATTCAATTC.......................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.................................ATTCATTAAAACGGAGGGTTT......................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................CAAGTATGTGTCGATTTCGTGGTT........................................................................................................................................................................................................................................................2411.00101000000000
.............................................................................................................................................................CAGCAACAGCAGCAA------CAGCA------...............................................................................................................................................................................20200.05100100000000
.................................................................................................................................................................AACAGCAGCAA------CAGCA------GC---..........................................................................................................................................................................18200.05100010000000
......................................................................................................................................................................................A------GC---AACAACAGCAA------CAGCAGC---------------------.............................................................................................................................21200.05100100000000
.......................................................................................................................................................CAACAGCAGCAACAGCAGCA.................................................................................................................................................................................................20200.05100010000000
droEre2
CGCGGCTGAGTTGCTCAAGTTTGACAAAATTCAATTCATTAAAACGGAGGGTTTAACATTCGCATTGCTGGCGGGCCCCATGGGCCAAGCGGCAAGTATGTGTCGATTTCGTGGTTGTCGCTACAAAAATAAGAACAAAAACAGCAAGCAGCAGCAGCAGCAGCAGCAGCAG------CAACA------GC---AGCAG---------------CAGCA---GCAGCAAC---------AGCAGCAAACACCAACCCATAGTCCTCAGAT-------------TCAGCATCACTCTGAAATAATAC------------CAGCTACAACAGGTGAGCAA---GT---------------GGCAA-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................ATTCGCATTGCTGGCGGGC................................................................................................................................................................................................................................................................................................1911.0010000010
............................................................................................CAAGTATGTGTCGATTTCGTGGT.........................................................................................................................................................................................................................................................2311.0010000100
.................................ATTCATTAAAACGGAGGGT........................................................................................................................................................................................................................................................................................................................1911.0010000010
..............................................GAGGGTTTAACATTCGCATTGCTGGC....................................................................................................................................................................................................................................................................................................2611.0011000000
.........................................................................................................................................AAAACAGCAAGCAGCAGC.................................................................................................................................................................................................................1811.0010000010
..........................................................................................GGCAAGTATGTGTCGATTTCGTGGTTGT......................................................................................................................................................................................................................................................2811.0010100000
........................................................................................................................................................................................................................GCA---GCAGCAAC---------AGCAGCAAA....................................................................................................................20100.1011000000
..............................................................................................................................................AGCAAGCAGCAGCAGCAG............................................................................................................................................................................................................18110.0910000010
..........................................................................................................................................................................AG------CAACA------GC---AGCAG---------------CAGCA---GCAGCA........................................................................................................................................25200.0510000010
.......................................................................................................................................................................AGCAG------CAACA------GC---AGCAG---------------CAG...................................................................................................................................................20200.0510001000
......................................................................................................................................................................................A------GC---AGCAG---------------CAGCA---GCAGCAAC---------A............................................................................................................................22200.0510001000
.............................................................................................................................................................................................GC---AGCAG---------------CAGCA---GCAGCAAC---------AGCAGCA......................................................................................................................27200.0510100000
.............................................................................................................................................................................................GC---AGCAG---------------CAGCA---GCAGCAAC---------A............................................................................................................................21200.0510000100
..................................................................................................................................................................................CAACA------GC---AGCAG---------------CAGCA---GCAGCA........................................................................................................................................23200.0510000010
.....................................................................................................................................................................GCAGCAG------CAACA------GC---AGCAG---------------C.....................................................................................................................................................20200.0510000010

Generated: 05/17/2015 at 04:23 AM