ID:

dvi_12444

 Coordinate:

scaffold_12963:18030099-18030249 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ19848-cds]; exon [dvir_GLEANR_530:4]; intron [Dvir\GJ19848-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAACGCACAACCAACACACACACGCACACACATACACACTGACTGATGATGACAACGCAGCAGCAGCTTGCGGCAGCAGCGTCGACTGAATCGGCGGCAGCAGCAGCAGCAGCAGTGGACACAGTCATGACAGCAGCTGCGACATCAACAACAACAAGCACCAAGCTGGGCAATGGCAATGCGGGCGGCAACAACAACAAGAACAACAGCACGAAGCAAGGCAAACACAGGTCGAGGTCATCCGCACGCTA
***************************************************************************(((((((((((((..((.((.((.((.......)).)).)).))..)))))..)))....)))))......********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V053
head
 M047
female body
 SRR060667
160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body		 SRR060677
Argx9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
...................................................................................................................................................................................................................CGAAGCAAGGCAAACACAGGTCGAGGTC............ 28 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................TGACAGCAGCTGCGACATC......................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................CATGACAGCAGCTGCGACATC......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................GCAGCGTCGACTGAATCGGC............................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................ACCAAGCTGGGCAATGGCAATGCGGGC................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................GACTGAATCGGCGGCAGCAGC................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGCACGAAGCAAGGCAAACACAGGT................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................CGACTGAATCGGCGGCAGGAGCCGCC............................................................................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0
............................................................CAGCACCTTGCGGATGCAGCGT......................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................AACAGCACGAAGCAAGGCA............................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................CAGCAGCGTGCGACAGCGGCGT......................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................................CGGCAGCAGCAGCAGCAGCAGT....................................................................................................................................... 22 0 13 0.08 1 0 0 0 0 1 0 0 0
........................................................................................CATCGGCGGCAGCAGCAGCAGCAGCA......................................................................................................................................... 26 1 19 0.05 1 0 0 0 0 0 1 0 0
.................................ATACGCTGACTGATGACGA....................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................................TCCGGGCGGAAACAACA....................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................CGGGCGGGAACAACAAAAAA.................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GTTGCGTGTTGGTTGTGTGTGTGCGTGTGTGTATGTGTGACTGACTACTACTGTTGCGTCGTCGTCGAACGCCGTCGTCGCAGCTGACTTAGCCGCCGTCGTCGTCGTCGTCGTCACCTGTGTCAGTACTGTCGTCGACGCTGTAGTTGTTGTTGTTCGTGGTTCGACCCGTTACCGTTACGCCCGCCGTTGTTGTTGTTCTTGTTGTCGTGCTTCGTTCCGTTTGTGTCCAGCTCCAGTAGGCGTGCGAT
*********************************************************************************************************(((((((((((((..((.((.((.((.......)).)).)).))..)))))..)))....)))))......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060689
160x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 M047
female body
 V047
embryo
 V116
male body		 SRR060680
 9xArg_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
...........................................................................................................................................................................................................GTTGTCGAGCTTCGTTCCGT............................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................CCGTCGTCGTCACCTCTGTCA.............................................................................................................................. 21 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................CGCCCTCGTCGTCACCTGAGT................................................................................................................................ 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.......................................................................ACGTCGTCGCAGCTGCCTT................................................................................................................................................................. 19 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................GTCTTCACCTGTGTCAGTC........................................................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
..................................................CTGTTTCGGCGTCGTCGAA...................................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0
......................................GACTCACTACTACTGTAACG................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................ACGCTGTAGATGTTGTCGTCC............................................................................................. 21 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0
.........TGGTTGTGTGTGTGCGTG................................................................................................................................................................................................................................ 18 0 17 0.06 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................CCGTCGTCGTCGTCGTCGTCA....................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................TGTTGCGTGGTCGTGGAAG..................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................CGTTGTTGTTGTTCTTGTTG............................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...........GTTGTGTGTGTGCGTGTGTGT........................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.................TGTGTGCGTGTGTGTATGTGT..................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................GTTGTTGTTGTACGTGGT........................................................................................ 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:18030049-18030299 - dvi_12444 CAACGC-----------------------ACAACCA---------ACACACACACGCACACACAT------------------------------------------ACACACTGAC-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AG--------------------CAGC----TTGCGG-C------------AGCAGCGTCGACT------------------------------------GAAT-------------------------------------------------------CGG---CGGC---AGCAGCAGCAGCAG---------------------------------------------C---AGTGGAC---------------------------------------------------------------ACAGTCATGACAGCAGCTGCGACATCAACAACAACAAGCACCA--------AGCTGGGCAATGG--------------CA---------------------------ATGCGGGCGG-------------------------------------------------------------------------CAACAA---------------CAACAAGAACAAC----------------------------------------------------------------------------------------------------------------------------------------------------AGCACGAAGCAAGGCAAACACAGGTCGAGGTCATCCGCACGCTA
droMoj3 scaffold_6680:8335715-8335955 - GCACGC-----------AA------------ATGCG---------ACGCTC------------------------------------------------TCGC-----------------------------------------------------------------------------------------------------------AATACTTTCAGCAGCTCAACTCGCAGGTGGCTGCAGTTGTAGC---------------------------CGGCAA-C------------AGCAGC---------------------------------------AGCG---GCAGCA----------------------------------GCAATAAAGGTGC---CAA---CAACAGCAACAACAGTAGCAG---------CAGCAGCAGCACCGGCAGC---------------------AA--------------------------------------------------------------------------------------------------------------------------------------CAACAA------CAA------CA---------------------------CCAACAACAACGGCAA------------------------------------------------------CAG-CAGCAGCGGCGGCAACAGCGACAGCGGAAACGATG-----------------------------------------------------------------------------------GC--------------------------------------------------------------------------AGTCTGTCCGGCGCGACGGCAGCCGC-----A
droGri2 scaffold_15252:6086523-6086804 - CGACGC-----------------------ACACTTGCACACACACACACACACCCGCACACACACACACGCAC-----------ACAA---ACTGTA------TACTGTATACTGAT-TGATGATGACAACGGAGC------------------------------------------------------------------------------------------------------------------AG-----------------------------------------------------------------------------------------AAACAACA---AC-------------------------AACAAC-----------TAGCGGCAG---CAG---C------AGCAGCAG---------------------------------------------CAGCAGCAGCTACGTC-------------------------G-----------ACTACGGATAACGGCAC---------------CATGACAGCA------------------------------------------GC-----AGCAACAGCAG------------CAACA---------------------------ACAACA-----------------------------------------------------------AC--------------------------------------------AACAAAAACAACAA--------------------------------------------------ATGG-----------------------------------CAACACAAGTGGT----GG---------------A-AATAACACAAAGCAAAGCAAGCACAGGTCGAGGTCATCCGCACGCTA
droWil2 scf2_1100000004521:11242153-11242393 - ATACGA-----------------------C---GC----------------------------------------------------------ACTCTCT------CATACCGTGAT-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------TAACGG-CAGCGGGTG---------------------------------AAGAAGGCACGT-------------------------------------------------------CTACGGGAA---CGG---C------GGCAACGG---------------------------------------------CAGCGGCAGGGGGTGT-------------------------TGGGGGCTACGT-----TGA---CAACAAAGCAGAAGCTCTAGCCATGA--------------------------------------------------------------CAGCAGCAG------CCACA--------------------------------------------------------------------------------------------AC--------------------------------------------AACAACTACAACATCAG-----------------------------------------------GT--------------------------------------------GGTGGT-----------------------GGAGGAGGAAAGCAAAGCAAACCCAGGTCGAGGTCATCTGCTCGCTA
dp5 4_group3:4661299-4661546 + CGAACC-----------ACC-----------ACGC----------------------------------------------------------ACACCCTCGCCACCGCATCGTGAT-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------TTGTGG-CAGGGCAAG---------------------------------AGGCAGGGGCAC-------------------------------------------------------CAGCGTCAC---CAG---A------GTCAGAGG---------------------------------------------CAGCAGCAGAAGCTCC-------------------------T-----------ACAGAGAACAACTGCGA-------------------------------------------------------------AGA--AGC-----AGCACAAGCAGCAGCAG------CCATG--------------------------------------------------------------------------------------------AC--------------------------------------------AGCAGCCACAACAGCAG-----------------------------------------------GCGG--------------------------------------AGCTGGGGGT--------------G---------CAGGGGGGAAGCAGAGCAAGCACAGGTCGAGGTCATCTGCACGGTA
droPer2 scaffold_1:6147094-6147341 + CGAACG-----------ACC-----------ACGC----------------------------------------------------------ACACCCTCGCCACCGCATCGTGAT-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------TTGTGG-CAGGGCAAG---------------------------------AGGCAGGGGCAC-------------------------------------------------------CAGCGTCAC---CAG---A------GTCAGAGG---------------------------------------------CAGTAGCAGAAGCTCC-------------------------T-----------ACAGAGAACAACTGCGA-------------------------------------------------------------AGA--AGC-----AGCACAAGCAGCAGCAG------CCATG--------------------------------------------------------------------------------------------AC--------------------------------------------AGCAGCCACAACAGCAG-----------------------------------------------GCGG--------------------------------------AGCTGGGGGC--------------G---------CAGGGGGTAAGCAGAGCAAGCACAGGTCGAGGTCATCTGCACGGTA
droAna3 scaffold_13117:4522596-4522818 - CGAAAC-----------AG------------AAACA---------ACA----------------------------------------------------------------------------------------ACAACAATCGACATAAACGTTGCAATCGGAGCCAAAG------------------------TCGCAG------------------------------------------------------------------------------------------------------------------------------------------CAGCATCA---GT-------------------------AGCAACAGCAGCAGCATCAGCAGCAG---CAA---C------AG---------------------------------------CAGCAGCAGCGGCGGAAGCAGAAGCGGTAGCATCAA---------------------------------------------------------------------------CGCTA-------------------CCAACAAC-------------AACATCAACAATAACAA------CAACAACA---------------------A------C-------------------------------------------------------------------AACAA---------------CAACAACAACAATA-----------------------------------------------------------------------------------GCA--------------A--------------------CAGCCGAAATAGCAG-------------------------------CA--------------GCTC--GA
droBip1 scf7180000396022:4480-4701 - GAAAGC-----------------------ACAAGAA---------ACACAAACA-------------------ACAACA-------------------------------------A-CA----------------ACAACAATCGCACAAAACGTTGCAATCGAAGCCAAAG------------------------TCGCAG------------------------------------------------------------------------------------------------------------------------------------------CAGCAACA---GT-------------------------AGCAACAACAGCAGCATCAGCAGCAA---CAG---C------AGCAGCGG---------------------------------------------CGGCAGCAGAAGCGGTAGCATCGA------------------------------------------------------------------CGGCG------------------------------------------GC-----AGCAACAACAACA---------------------------------------ACAACAATA-----------------------------------------------------------AT--------------------------------------------AACAACAACAATAA------------------------------------------------------------------------------------------------------CAGCCGCAACAGCAGCAGCTCGAAA-AGCAGC--------------------------------------
droKik1 scf7180000302401:402545-402782 + CGAAAA-----------ACA-----------ACG-----------ACGACG-------------------------------ACGACG---ACACTTTCT------GGCATCGTGATTTGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AG--------------------------------------------------CAGC---------------------------------------AGCA---GCAGCA----------------------------------GC--TTGTGGGAAAGTCAG---CGGA---AGCAGAGGCGGAAA---------CCGAGGAAAAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGAAGGAGGTGCAA------AAATG--------------------------------------------------------------------------------------------AC--------------------------------------------GGCAGCGACCACTGGGG-----------------------------------------------GCGGCAGCTCGGCATCG--------------GCGGGCGGAAAAGCTGGTGGT--------------------------------------GGGAAGCACAGGTCGAGGTCATCTGCCCGATA
droFic1 scf7180000454043:247354-247600 - CGAAAT-----------CG------------AAACG---------AAA-----ACCCAACA------------ACGACGACGACGACGACAACACTTTCT------GGCATCGTGATTTGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AG-----------------------------------------------------------------------------------------CAGCAGC------------------------------------------------TTTTGGGAAAGCCAG---CGAA---GTCAGGGG---CAG---CGGAAAACGAGGAAAAACC------------------------------------------------------------------------------------------------ACCAGCA---------------------------------------------------GC-----AGAAGGAGCAGGAGGAG------AGATG--------------------------------------------------------------------------------------------AC--------------------------------------------GGCGGCCACG---GGGG-----------------------------------------------GTGGGAGTGCGG---GG-------------------------------------------------G---------CGGGCGGAAAGGCTGGAAAGCACAGGTCGAGGTCATCCGCCCGCTA
droEle1 scf7180000491214:2531339-2531563 + CAACGG-----------------------CCAAGCA---------TTACAAAACCGCAGGCAAAC------------------------------------------AGTACAAGAC-CAATAAAGTGAACA---------------------------------------------------------------------------------------------------------------------------------------ATACGCGACGTGC----CA-C------------AGCAGCAGCAGCA------------------------------------GCAGCGGCG-------------------------------------------GCAG---CAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAACAGCAGCAA------CCACAACA---------------------G------CAGCAACA--------ACATCAACAACCA-------------AGAAGCAGACAT-ATCGGG--AAA-CTGCAA---------------CTGCAACCACAG----------------------------------------------------------------------------------------------------------------TC---ACTC-----------------------AGCG-AGCAACAAACAAAGCTAACAGAG---------------------
droRho1 scf7180000766880:70578-70796 - CAACGG-----------------------CCAAGCA---------TTACAAAACCGCAGGCAAAC------------------------------------------AGTACAAGAC-CAATAAAGTGAACA---------------------------------------------------------------------------------------------------------------------------------------ATACGCGACGTGC----CA-C------------AGCAGCAGCAGCG------------------------------------GCGGCAG----------------------------------------------------CAG------------CAGCAGCAGCAG---------------------------C---------------------AA--------------------------------------------------------------------------------------------------------------------------------------CAACCA------CAA------CA---------------------------GTAACAACAGCAGCA--------ACATC---AACCA-------------AGAAGCAGACAT-ATCGGG--AAA-CTGCAA---------------CAGCAACCACAG----------------------------------------------------------------------------------------------------------------TC---ACTC-----------------------AGAG-AGCAACAAACAAAGCTAACAGAG---------------------
droBia1 scf7180000301760:315488-315722 - CATCAC-----------CA------------GCACG---------------------------------------------------------------------------------------------------------------------CGTCGCATTCGCACTCACATTCGCACCACCATCCCCAC------TCGCA--------------------------------------------------C---------------------------TCGCAT-C------------AGCAGC---------------------------------------AGCA---GCAG----------------------------------CAGCATCTCCATCAG---CAG---C------AGCAGCAG---------------------------------------------CAGCAGCAGCAACACCACCATCCGCACCATCATCTGAAGCTGGAAAGCAGCAG-----CAACAACCACCC-------------------------------------------------------------ACC--GAC-----AGCAGCAGCGGCAGCA------------------------------------G-------------------------------------------------------------------------CAGCAG---------------CAGTAGCAACAAC------------------TGCAT---------------------------------------------------------------------------------------------------CAGCCACTGTGGCCA-------------------------------CA---------------------G
droTak1 scf7180000415169:857645-857894 + CGCACG-----------CCC-----------ACGC-----------CA-----------------------------------------------GCCACGCCCATAGCAGCCACGC-CC----------------ACAACAGTCA------------------------------------------------------CGCC----------------------------------------------CACGCTTTGGCGA---------TAGC----CCACGGTC------------ATCACGGTCTACT------------------------------------GCCGCAACAGCAACAGCAGCAGCAGCAGGC-------------GCAACAGTTGCCG---CAA---C------AG---------------------------------------CTG------------CCG---CAACAGTTG---------------------------------------------------------------------------------CC-----------------------------------------------------------GCAACAGCAGCAGCA---------------------A---------------------------------------------------------------------CAG-CAGGCG---------------CAACAGCAACA--------------------------------------------------------------------------------------GCA--------------G--------------------CAGGCGCAACAGCAG---------------CTGATCAACAACAACGGAG-GCGGAGCCACACCCACGCT-
droEug1 scf7180000406484:553-754 - ACAGAC-----------AG------------ACAG----------ACA----GACAGACAGACAGACAGACAG----------------------------------ACAG------------------ACA---------------------------------------------------------------------------------------------------------------------------------------GCAAGCAGCAGACAGACAG-C------------AGCAGC---------------------------------------AGCAGCAGCAG----------------------------------------------------CAG---CAGC---AGCAGCAGCAGCAGCAGCAGACAGCAGCAGCAGACN---------------------------------------------------------------------------------------------------------------------------GACAGCAGCAGACAGAC--------AGACAGACAGCAG--------------AC---------------------------AGACAGACAG---------------------------------------------------------------------------ACAG---------------CAGACAGACAG------------------------------------------------------------------------------------------------------------------------------------A---C-------------AGCAGACAGA------------------------CAGACAGACA
dm3 chr3L:2871339-2871550 - CGCCGT-----------------------ACCACCA----------------------------------------------------------------------------------------------------------------------------------------------------TCCGCATTCGCATTCGCATCCGCATCATCACTACCAGCAGCACTATC-----------------------------------------------------CG-C------------AGCAGCAACATCT------------------------------------GCAGCAACAGCAACAGCAGCAGCATCACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC-------------AACATCAGCAGCAGCAG------CAGCAACA---------------------G------CAGCAGCAGCAGCAGC--------AGCAC-------------TGGGACTACTAT-GCCAGG--CAG-CAGCAG---------------CAACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAA
droSim2 3l:2754486-2754688 - CGCCGT-----------------------ACCACCA----------------------------------------------------------------------------------------------------------------------------------------------------TCCGCAT------TCGCATCCGCATCATCACTACCAGCAGCACTATC-----------------------------------------------------CG-C------------AGCAACAACATCT------------------------------------GCAGCAGCAGCAACAGCAGCAGCATCACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC-------------AACATCAGCAGCAGCAG------CAGCAACA---------------------G------CAGCAGCA---GCAGC--------AGCAC-------------TGGGACTACTAT-GCCAGG--CAG-CAGCAG---------------CAACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAA
droSec2 scaffold_8:3511652-3511907 - CAGCCAGGGCGGCCCACAGATACCGGCGCACCAGCA------------T----------------------------------------------------------CCACCCAGCT-TGCATCAGCAACAGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------CCCCGC--CCCCCTCGCAGCAGCAGCAACAGCTTCATCAGCTCAAGTCCCCGCA---------------GCAGCACCAGCAACAGCTGCAGCAGC-------------------------------------------------------------------------------ACC------AG------------CAG---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------CCATCAGCAGCAACATCACCAGCAGCAAC------AG------C-------------------------------------------------------------------AGCAG---------------CAACACCATCAGCAGC---AAC-------------------------------------------------------------------------------------------------------------------------------------------------AGCCAAACGAATCGGATGTCGTGCCCATCAGCACG---
droYak3 X:5014339-5014608 + GCACCA-----------------------CCAAAA-------------TCTA------------------------------------------------------------------------------------------------------------------------------------TCCGCAG------TTGCTGC----------------------------------------------TGCGCATTGGCGGAGAAATTG--CCGGTGC----AA-C------------AGCAACAACAGCA------------------------------------GCAACAGCA-------------------------------------------GCAA---TAGCAGCAAC---AG---------------------------------------CAA------------CAA---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------GCAT---------------------------------------CAGCAGCA--------ACATCACCAACCATAATCAGCTGCAATGGTGAAATTGCCGCCAGT--CAGCCAGCAG---------------CAACAGCAGCGGACACAGCAGCAGCAACAT-------------------------------------------------------TG-----------------------------------CAACAC-AACAAC-----------------------AC----GGTAAAGATTCAAATCGAAAGCCAGGGTCAGCCGCGAACTC
droEre2 scaffold_4784:22445260-22445507 - CCAAGC-----------ACA-----------TCG-----------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------ACCAC-------------------------------------------------------------------------ATGAAC-CCAAACACC---------------------------------ACAAAGGTGCGCCGACAGCA---AC-------------------------AGCAACAGCAGCAGCACCAACAGCAG---CAA---C------AG---------------------------------------CAG-----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG------CAG------CA---------------------------GCAGCAACAACAGCAACAGCAGC--------AGCAG-------------CAGAACAA--------------------------------------------------C------------------GCCGTCGCCCAGGTGGCCAATCACCTAATGAACGACGCCAAGAGTCTGGCGG----------------CCCAGCAGTTCCTCAACAACAATAACC---CCTC---------GA---C-------------AGTAGACAACAAGGCCAACAT----------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAACGC-----------------------ACAACCA---------ACACACACACGCACACACAT------------------------------------------ACACACTGAC-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AG--------------------CAGC----TTGCGG-C------------AGCAGCGTCGACT------------------------------------GAAT-------------------------------------------------------CGG---CGGC---AGCAGCAGCAGCAG---------------------------------------------C---AGTGGAC---------------------------------------------------------------ACAGTCATGACAGCAGCTGCGACATCAACAACAACAAGCACCA--------AGCTGGGCAATGG--------------CA---------------------------ATGCGGGCGG-------------------------------------------------------------------------CAACAA---------------CAACAAGAACAAC----------------------------------------------------------------------------------------------------------------------------------------------------AGCACGAAGCAAGGCAAACACAGGTCGAGGTCATCCGCACGCTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGCAAGGCAAACACAGGTCGAGGTC............2811.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGCAGCTGCGACATC......................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCAGCTGCGACATC......................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GCAGCGTCGACT------------------------------------GAAT-------------------------------------------------------CGG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA--------AGCTGGGCAATGG--------------CA---------------------------ATGCGGGC.............................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GACT------------------------------------GAAT-------------------------------------------------------CGG---CGGC---AGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACGAAGCAAGGCAAACACAGGT...................2511.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------------------------------------------------------------------------------------------------------------------AGCACGAAGCAAGGCA............................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGGC---AGCAGCAGCAGCAG---------------------------------------------C---AGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.081000000000000000000000000000000001000000000000000000000000000000
droMoj3
GCACGC-----------AA------------ATGCG---------ACGCTC------------------------------------------------TCGC-----------------------------------------------------------------------------------------------------------AATACTTTCAGCAGCTCAACTCGCAGGTGGCTGCAGTTGTAGC---------------------------CGGCAA-C------------AGCAGC---------------------------------------AGCG---GCAGCA----------------------------------GCAATAAAGGTGC---CAA---CAACAGCAACAACAGTAGCAG---------CAGCAGCAGCACCGGCAGC---------------------AA--------------------------------------------------------------------------------------------------------------------------------------CAACAA------CAA------CA---------------------------CCAACAACAACGGCAA------------------------------------------------------CAG-CAGCAGCGGCGGCAACAGCGACAGCGGAAACGATG-----------------------------------------------------------------------------------GC--------------------------------------------------------------------------AGTCTGTCCGGCGCGACGGCAGCCGC-----ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................ACTCGCAGGTGGCTGCAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................ATACTTTCAGCAGCTCAACTCGCAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAACGATG-----------------------------------------------------------------------------------GC--------------------------------------------------------------------------AGTCTGTCCGGC....................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................GC---CAA---CAACAGCAACAACAGTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGACAGCGGAAACGAT................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................ATACTTTCAGCAGCTCAACTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAGTAGCAG---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGCAA------------------------------------------------------CAG-CAGCAGC...........................................................................................................................................................................................................................2160.171000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCAGC---------------------AA--------------------------------------------------------------------------------------------------------------------------------------CAACAA------CAA------.........................................................................................................................................................................................................................................................................................................................................1960.171100000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAGTAGCAG---------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCACCGGCAGC---------------------AA--------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................1980.131100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGTAGCAG---------CAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------------AA--------------------------------------------------------------------------------------------------------------------------------------CAACAA------CAA------CA---------------------------CC..........................................................................................................................................................................................................................................................................................................20160.132100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGTAGCAG---------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
...........................................................................................................................................................................................................................................................................................CAA-C------------AGCAGC---------------------------------------AGCG---GCAGCA----------------------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
CGACGC-----------------------ACACTTGCACACACACACACACACCCGCACACACACACACGCAC-----------ACAA---ACTGTA------TACTGTATACTGAT-TGATGATGACAACGGAGC------------------------------------------------------------------------------------------------------------------AG-----------------------------------------------------------------------------------------AAACAACA---AC-------------------------AACAAC-----------TAGCGGCAG---CAG---C------AGCAGCAG---------------------------------------------CAGCAGCAGCTACGTC-------------------------G-----------ACTACGGATAACGGCAC---------------CATGACAGCA------------------------------------------GC-----AGCAACAGCAG------------CAACA---------------------------ACAACA-----------------------------------------------------------AC--------------------------------------------AACAAAAACAACAA--------------------------------------------------ATGG-----------------------------------CAACACAAGTGGT----GG---------------A-AATAACACAAAGCAAAGCAAGCACAGGTCGAGGTCATCCGCACGCTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................A---AC-------------------------AACAAC-----------TAGCGGCAG---CAG---C------AGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
droWil2
ATACGA-----------------------C---GC----------------------------------------------------------ACTCTCT------CATACCGTGAT-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------TAACGG-CAGCGGGTG---------------------------------AAGAAGGCACGT-------------------------------------------------------CTACGGGAA---CGG---C------GGCAACGG---------------------------------------------CAGCGGCAGGGGGTGT-------------------------TGGGGGCTACGT-----TGA---CAACAAAGCAGAAGCTCTAGCCATGA--------------------------------------------------------------CAGCAGCAG------CCACA--------------------------------------------------------------------------------------------AC--------------------------------------------AACAACTACAACATCAG-----------------------------------------------GT--------------------------------------------GGTGGT-----------------------GGAGGAGGAAAGCAAAGCAAACCCAGGTCGAGGTCATCTGCTCGCTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCCAGGTCGAGGTCATCTGCTC....2612.00220000
..........................................................................................................CATACCGTGAT-TGATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGCAAACCCAGGTCGAGGTCA...........2511.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTCTAGCCATGA--------------------------------------------------------------CAG.....................................................................................................................................................................................................................................................................................................................................................1911.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAGGTCGAGGTCATCTG.......2111.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAG-----------------------------------------------GT--------------------------------------------GGTGGT-----------------------GGAGGAGGAA.....................................2311.00100001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------GT--------------------------------------------GGTGGT-----------------------GGAGGAGGAAA....................................2020.50100010
dp5
CGAACC-----------ACC-----------ACGC----------------------------------------------------------ACACCCTCGCCACCGCATCGTGAT-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------TTGTGG-CAGGGCAAG---------------------------------AGGCAGGGGCAC-------------------------------------------------------CAGCGTCAC---CAG---A------GTCAGAGG---------------------------------------------CAGCAGCAGAAGCTCC-------------------------T-----------ACAGAGAACAACTGCGA-------------------------------------------------------------AGA--AGC-----AGCACAAGCAGCAGCAG------CCATG--------------------------------------------------------------------------------------------AC--------------------------------------------AGCAGCCACAACAGCAG-----------------------------------------------GCGG--------------------------------------AGCTGGGGGT--------------G---------CAGGGGGGAAGCAGAGCAAGCACAGGTCGAGGTCATCTGCACGGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGTCGAGGTCATCTGCA.....2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAGCAGCAGCAG------CCATG--------------------------------------------------------------------------------------------AC--------------------------------------------..........................................................................................................................................................................................2311.0010010000000
droPer2
CGAACG-----------ACC-----------ACGC----------------------------------------------------------ACACCCTCGCCACCGCATCGTGAT-TGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------TTGTGG-CAGGGCAAG---------------------------------AGGCAGGGGCAC-------------------------------------------------------CAGCGTCAC---CAG---A------GTCAGAGG---------------------------------------------CAGTAGCAGAAGCTCC-------------------------T-----------ACAGAGAACAACTGCGA-------------------------------------------------------------AGA--AGC-----AGCACAAGCAGCAGCAG------CCATG--------------------------------------------------------------------------------------------AC--------------------------------------------AGCAGCCACAACAGCAG-----------------------------------------------GCGG--------------------------------------AGCTGGGGGC--------------G---------CAGGGGGTAAGCAGAGCAAGCACAGGTCGAGGTCATCTGCACGGTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACAGCAG-----------------------------------------------GCGG--------------------------------------AGCTGGGGGC--------------........................................................2511.001010000
droAna3
CGAAAC-----------AG------------AAACA---------ACA----------------------------------------------------------------------------------------ACAACAATCGACATAAACGTTGCAATCGGAGCCAAAG------------------------TCGCAG------------------------------------------------------------------------------------------------------------------------------------------CAGCATCA---GT-------------------------AGCAACAGCAGCAGCATCAGCAGCAG---CAA---C------AG---------------------------------------CAGCAGCAGCGGCGGAAGCAGAAGCGGTAGCATCAA---------------------------------------------------------------------------CGCTA-------------------CCAACAAC-------------AACATCAACAATAACAA------CAACAACA---------------------A------C-------------------------------------------------------------------AACAA---------------CAACAACAACAATA-----------------------------------------------------------------------------------GCA--------------A--------------------CAGCCGAAATAGCAG-------------------------------CA--------------GCTC--GASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................A---GT-------------------------AGCAACAGCAGCAGCATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCATCAGCAGCAG---CAA---C------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.501010000
.............................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCATCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.222000002
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCAGCAGCAG---CAA---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.152200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CAACAACA---------------------A------C-------------------------------------------------------------------AACAA---------------CAACAACA.....................................................................................................................................................................................................24200.102020000
.............................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCATCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000011
...............................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCATCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000001
..........................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAG---CAA---C------AG---------------------------------------CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---------------CAACAACAACAATA-----------------------------------------------------------------------------------GCA--------------...........................................................................................22140.071100000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------A------C-------------------------------------------------------------------AACAA---------------CAACAACAACAATA-----------------------------------------------------------------------------------............................................................................................................23200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG---CAA---C------AG---------------------------------------CAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAA------CAACAACA---------------------A------C-------------------------------------------------------------------AAC..............................................................................................................................................................................................................................19200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACAA------CAACAACA---------------------A------C-------------------------------------------------------------------AACA.............................................................................................................................................................................................................................22200.051010000
droBip1
GAAAGC-----------------------ACAAGAA---------ACACAAACA-------------------ACAACA-------------------------------------A-CA----------------ACAACAATCGCACAAAACGTTGCAATCGAAGCCAAAG------------------------TCGCAG------------------------------------------------------------------------------------------------------------------------------------------CAGCAACA---GT-------------------------AGCAACAACAGCAGCATCAGCAGCAA---CAG---C------AGCAGCGG---------------------------------------------CGGCAGCAGAAGCGGTAGCATCGA------------------------------------------------------------------CGGCG------------------------------------------GC-----AGCAACAACAACA---------------------------------------ACAACAATA-----------------------------------------------------------AT--------------------------------------------AACAACAACAATAA------------------------------------------------------------------------------------------------------CAGCCGCAACAGCAGCAGCTCGAAA-AGCAGC--------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGAAAA-----------ACA-----------ACG-----------ACGACG-------------------------------ACGACG---ACACTTTCT------GGCATCGTGATTTGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AG--------------------------------------------------CAGC---------------------------------------AGCA---GCAGCA----------------------------------GC--TTGTGGGAAAGTCAG---CGGA---AGCAGAGGCGGAAA---------CCGAGGAAAAACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGAAGGAGGTGCAA------AAATG--------------------------------------------------------------------------------------------AC--------------------------------------------GGCAGCGACCACTGGGG-----------------------------------------------GCGGCAGCTCGGCATCG--------------GCGGGCGGAAAAGCTGGTGGT--------------------------------------GGGAAGCACAGGTCGAGGTCATCTGCCCGATASizeHit CountTotal NormTotal
No Reads
droFic1
CGAAAT-----------CG------------AAACG---------AAA-----ACCCAACA------------ACGACGACGACGACGACAACACTTTCT------GGCATCGTGATTTGATGATGACAACGCAGC------------------------------------------------------------------------------------------------------------------AG-----------------------------------------------------------------------------------------CAGCAGC------------------------------------------------TTTTGGGAAAGCCAG---CGAA---GTCAGGGG---CAG---CGGAAAACGAGGAAAAACC------------------------------------------------------------------------------------------------ACCAGCA---------------------------------------------------GC-----AGAAGGAGCAGGAGGAG------AGATG--------------------------------------------------------------------------------------------AC--------------------------------------------GGCGGCCACG---GGGG-----------------------------------------------GTGGGAGTGCGG---GG-------------------------------------------------G---------CGGGCGGAAAGGCTGGAAAGCACAGGTCGAGGTCATCCGCCCGCTASizeHit CountTotal NormTotal
No Reads
droEle1
CAACGG-----------------------CCAAGCA---------TTACAAAACCGCAGGCAAAC------------------------------------------AGTACAAGAC-CAATAAAGTGAACA---------------------------------------------------------------------------------------------------------------------------------------ATACGCGACGTGC----CA-C------------AGCAGCAGCAGCA------------------------------------GCAGCGGCG-------------------------------------------GCAG---CAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAACAGCAGCAA------CCACAACA---------------------G------CAGCAACA--------ACATCAACAACCA-------------AGAAGCAGACAT-ATCGGG--AAA-CTGCAA---------------CTGCAACCACAG----------------------------------------------------------------------------------------------------------------TC---ACTC-----------------------AGCG-AGCAACAAACAAAGCTAACAGAG---------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAACGG-----------------------CCAAGCA---------TTACAAAACCGCAGGCAAAC------------------------------------------AGTACAAGAC-CAATAAAGTGAACA---------------------------------------------------------------------------------------------------------------------------------------ATACGCGACGTGC----CA-C------------AGCAGCAGCAGCG------------------------------------GCGGCAG----------------------------------------------------CAG------------CAGCAGCAGCAG---------------------------C---------------------AA--------------------------------------------------------------------------------------------------------------------------------------CAACCA------CAA------CA---------------------------GTAACAACAGCAGCA--------ACATC---AACCA-------------AGAAGCAGACAT-ATCGGG--AAA-CTGCAA---------------CAGCAACCACAG----------------------------------------------------------------------------------------------------------------TC---ACTC-----------------------AGAG-AGCAACAAACAAAGCTAACAGAG---------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CATCAC-----------CA------------GCACG---------------------------------------------------------------------------------------------------------------------CGTCGCATTCGCACTCACATTCGCACCACCATCCCCAC------TCGCA--------------------------------------------------C---------------------------TCGCAT-C------------AGCAGC---------------------------------------AGCA---GCAG----------------------------------CAGCATCTCCATCAG---CAG---C------AGCAGCAG---------------------------------------------CAGCAGCAGCAACACCACCATCCGCACCATCATCTGAAGCTGGAAAGCAGCAG-----CAACAACCACCC-------------------------------------------------------------ACC--GAC-----AGCAGCAGCGGCAGCA------------------------------------G-------------------------------------------------------------------------CAGCAG---------------CAGTAGCAACAAC------------------TGCAT---------------------------------------------------------------------------------------------------CAGCCACTGTGGCCA-------------------------------CA---------------------GSizeHit CountTotal NormTotal
No Reads
droTak1
CGCACG-----------CCC-----------ACGC-----------CA-----------------------------------------------GCCACGCCCATAGCAGCCACGC-CC----------------ACAACAGTCA------------------------------------------------------CGCC----------------------------------------------CACGCTTTGGCGA---------TAGC----CCACGGTC------------ATCACGGTCTACT------------------------------------GCCGCAACAGCAACAGCAGCAGCAGCAGGC-------------GCAACAGTTGCCG---CAA---C------AG---------------------------------------CTG------------CCG---CAACAGTTG---------------------------------------------------------------------------------CC-----------------------------------------------------------GCAACAGCAGCAGCA---------------------A---------------------------------------------------------------------CAG-CAGGCG---------------CAACAGCAACA--------------------------------------------------------------------------------------GCA--------------G--------------------CAGGCGCAACAGCAG---------------CTGATCAACAACAACGGAG-GCGGAGCCACACCCACGCT-SizeHit CountTotal NormTotal
No Reads
droEug1
ACAGAC-----------AG------------ACAG----------ACA----GACAGACAGACAGACAGACAG----------------------------------ACAG------------------ACA---------------------------------------------------------------------------------------------------------------------------------------GCAAGCAGCAGACAGACAG-C------------AGCAGC---------------------------------------AGCAGCAGCAG----------------------------------------------------CAG---CAGC---AGCAGCAGCAGCAGCAGCAGACAGCAGCAGCAGACN---------------------------------------------------------------------------------------------------------------------------GACAGCAGCAGACAGAC--------AGACAGACAGCAG--------------AC---------------------------AGACAGACAG---------------------------------------------------------------------------ACAG---------------CAGACAGACAG------------------------------------------------------------------------------------------------------------------------------------A---C-------------AGCAGACAGA------------------------CAGACAGACASizeHit CountTotal NormTotal
No Reads
dm3
CGCCGT-----------------------ACCACCA----------------------------------------------------------------------------------------------------------------------------------------------------TCCGCATTCGCATTCGCATCCGCATCATCACTACCAGCAGCACTATC-----------------------------------------------------CG-C------------AGCAGCAACATCT------------------------------------GCAGCAACAGCAACAGCAGCAGCATCACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC-------------AACATCAGCAGCAGCAG------CAGCAACA---------------------G------CAGCAGCAGCAGCAGC--------AGCAC-------------TGGGACTACTAT-GCCAGG--CAG-CAGCAG---------------CAACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAT-GCCAGG--CAG-CAGCAG---------------CAACA........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-------------TGGGACTACTAT-GCCAGG--CAG-CAGCA.............................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC-------------AACATCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC-------------AACATCAGCAGCAGCAG------CAGCA....................................................................................................................................................................................................................................................................................................................................26150.5380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000050000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TCT------------------------------------GCAGCAACAGCAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAGCAACA---------------------G------CAGCAGCAGCA..........................................................................................................................................................................................................................................................................................23200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-CAGCAG---------------CAACATCAACAGCAGC---AG........................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCAGCAGCAGCAG------CAGCAACA---------------------............................................................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---------------CAACATCAACAGC................................................................................................................................................................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ATTCGCATTCGCATCCGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGC-------------AACATCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G...1980.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC-------------AACATCAGCAGCAGCAG------CAG......................................................................................................................................................................................................................................................................................................................................26120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-CAGCAG---------------CAACATCAACAGCAGC---..........................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------CAACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G...2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------CAACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA.2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------AACATCAGCAGCAGCAG------C........................................................................................................................................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------CAACATCAACAGCAGC---AG........................................................................................................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-CAGCAG---------------CAACATCAACAGC................................................................................................................................................................................................22100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.............................................................................................................................................................................................ATTCGCATTCGCATCCGCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAA2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CATCT------------------------------------GCAGCAACAGCAACAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG------CAGCAACA---------------------G------CAGC.................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA.2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC..2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC-------------AACATCAGCAGCAGCAG------CAGC.....................................................................................................................................................................................................................................................................................................................................25160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-------------AACATCAGCAGCAGCAG------CAGCA....................................................................................................................................................................................................................................................................................................................................25170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
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droSim2
CGCCGT-----------------------ACCACCA----------------------------------------------------------------------------------------------------------------------------------------------------TCCGCAT------TCGCATCCGCATCATCACTACCAGCAGCACTATC-----------------------------------------------------CG-C------------AGCAACAACATCT------------------------------------GCAGCAGCAGCAACAGCAGCAGCATCACGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCAGC-------------AACATCAGCAGCAGCAG------CAGCAACA---------------------G------CAGCAGCA---GCAGC--------AGCAC-------------TGGGACTACTAT-GCCAGG--CAG-CAGCAG---------------CAACATCAACAGCAGC---AGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAGCAGCAG------CAGCAACA---------------------G------C....................................................................................................................................................................................................................................................................................................23101.1011000001100000000000
..................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21191.0520000002000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GCAGC--------AGCAC-------------TGGGAC.....................................................................................................................................................................................................................................................2111.00100100000000000000
............................................................................................................................................................................................................................................................................................CG-C------------AGCAACAACATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15100.20200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAGCAACA---------------------G------CAGCAGCA---GCAGC--------AGC..........................................................................................................................................................................................................................................................................27200.05100000000000100000
droSec2
CAGCCAGGGCGGCCCACAGATACCGGCGCACCAGCA------------T----------------------------------------------------------CCACCCAGCT-TGCATCAGCAACAGCAGC------------------------------------------------------------------------------------------------------------------AGC---------------------------CCCCGC--CCCCCTCGCAGCAGCAGCAACAGCTTCATCAGCTCAAGTCCCCGCA---------------GCAGCACCAGCAACAGCTGCAGCAGC-------------------------------------------------------------------------------ACC------AG------------CAG---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------CCATCAGCAGCAACATCACCAGCAGCAAC------AG------C-------------------------------------------------------------------AGCAG---------------CAACACCATCAGCAGC---AAC-------------------------------------------------------------------------------------------------------------------------------------------------AGCCAAACGAATCGGATGTCGTGCCCATCAGCACG---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------------------CA-----------------------------------------------------------CCATCAGCAGCAACATCA..............................................................................................................................................................................................................................................................................................................................2111.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC------AG------C-------------------------------------------------------------------AGCAG---------------CAA..........................................................................................................................................................................................................18200.1020020
....................................................................................................................................................................................................................................................................................................................................................................................AGC-------------------------------------------------------------------------------ACC------AG------------CAG---CAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000
droYak3
GCACCA-----------------------CCAAAA-------------TCTA------------------------------------------------------------------------------------------------------------------------------------TCCGCAG------TTGCTGC----------------------------------------------TGCGCATTGGCGGAGAAATTG--CCGGTGC----AA-C------------AGCAACAACAGCA------------------------------------GCAACAGCA-------------------------------------------GCAA---TAGCAGCAAC---AG---------------------------------------CAA------------CAA---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------GCAT---------------------------------------CAGCAGCA--------ACATCACCAACCATAATCAGCTGCAATGGTGAAATTGCCGCCAGT--CAGCCAGCAG---------------CAACAGCAGCGGACACAGCAGCAGCAACAT-------------------------------------------------------TG-----------------------------------CAACAC-AACAAC-----------------------AC----GGTAAAGATTCAAATCGAAAGCCAGGGTCAGCCGCGAACTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................AA-C------------AGCAACAACAGCA------------------------------------GCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.10101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC---AG---------------------------------------CAA------------CAA---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................27150.07101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AG---------------------------------------CAA------------CAA---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------GC..............................................................................................................................................................................................................................................................................................................................................24190.05100010000000
...............................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------------GCAACAGCA-------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
................................................................................................................................................................................................................................................................................................................ACAACAGCA------------------------------------GCAACAGCA-------------------------------------------GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AG---------------------------------------CAA------------CAA---CAGCAGCAG---------------------------------------------------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...............................................................................................................................................................................................................................................................................................................AACAACAGCA------------------------------------GCAACAGCA-------------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------GCAT---------------------------------------CAG..................................................................................................................................................................................................................................................................................................20200.05100010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................C---AG---------------------------------------CAA------------CAA---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------CAA------------CAA---CAGCAGCAG---------------------------------------------------------------------------------CA-----------------------------------------------------------GC..............................................................................................................................................................................................................................................................................................................................................20200.05100100000000
droEre2
CCAAGC-----------ACA-----------TCG-----------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------ACCAC-------------------------------------------------------------------------ATGAAC-CCAAACACC---------------------------------ACAAAGGTGCGCCGACAGCA---AC-------------------------AGCAACAGCAGCAGCACCAACAGCAG---CAA---C------AG---------------------------------------CAG-----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG------CAG------CA---------------------------GCAGCAACAACAGCAACAGCAGC--------AGCAG-------------CAGAACAA--------------------------------------------------C------------------GCCGTCGCCCAGGTGGCCAATCACCTAATGAACGACGCCAAGAGTCTGGCGG----------------CCCAGCAGTTCCTCAACAACAATAACC---CCTC---------GA---C-------------AGTAGACAACAAGGCCAACAT----------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGACGCCAAGAGTCTGGC............................................................................................................................2112.0020010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGAGTCTGGCGG----------------CCCAGCA...................................................................................................2311.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTCTGGCGG----------------CCCAGCA...................................................................................................2111.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------------------------------------C------------------GCCGTCGCCCAGGT................................................................................................................................................................1811.0010010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACAA--------------------------------------------------C------------------GCCGTCGCCCAGG.................................................................................................................................................................2111.0010100000
.................ACA-----------TCG-----------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------ACCAC-------------------------------------------------------------------------ATGAAC-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...................A-----------TCG-----------ACA----------------------------------------------------------------------------------------------------------------------------------------------------------ACCAC-------------------------------------------------------------------------ATGAAC-CCAAACACC---------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAA--------------------------------------------------C------------------GCCGTCGCCCAGGTG...............................................................................................................................................................2211.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTCTGGCGG----------------CCCAGC....................................................................................................1811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................CGACAGCA---AC-------------------------AGCAACAGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-------------CAGAACAA--------------------------------------------------C------------------GCCGTC........................................................................................................................................................................2011.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCACCAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
................................................................................................................................................................................................................................................................................................................................................................AC-------------------------AGCAACAGCAGCAGCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3311000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAA---C------AG---------------------------------------CAG-----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG------CAG------CA---------------------------............................................................................................................................................................................................................................................................................................................22200.1530003000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGC--------AGCAG-------------C..........................................................................................................................................................................................................................................................20200.1020000110
............................................................................................................................................................................................................................................................................................................................................................A---AC-------------------------AGCAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAGCAGC--------A............................................................................................................................................................................................................................................................................24120.0810000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGC--------A............................................................................................................................................................................................................................................................................22160.0610000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGC--------AGCAG-------------CAGA.......................................................................................................................................................................................................................................................22170.0610000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC--------AGCAG-------------CAGAA......................................................................................................................................................................................................................................................19170.0610000010
.......................................................................................................................................................................................................................................................................................................................................................ACAGCA---AC-------------------------AGCAACAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCAGC--------A............................................................................................................................................................................................................................................................................20200.0510001000
..........................................................................................................................................................................................................................................................................................................................................................GCA---AC-------------------------AGCAACAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000
...................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAA---C------AG---------------------------------------CAG-----------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG------CAG------CA---------------------------GCA.........................................................................................................................................................................................................................................................................................................25200.0510000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCAGC--------.............................................................................................................................................................................................................................................................................19200.0510001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGC--------AGCAG-------------CA.........................................................................................................................................................................................................................................................21200.0510000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGC--------AGCA.........................................................................................................................................................................................................................................................................18200.0510000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGC--------AGCAG-------------C..........................................................................................................................................................................................................................................................21200.0510001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGC--------AGCA.........................................................................................................................................................................................................................................................................19200.0510000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCAGC--------AG...........................................................................................................................................................................................................................................................................21200.0510001000

Generated: 05/17/2015 at 04:00 AM