ID:

dvi_12414

 Coordinate:

scaffold_12963:17804864-17804926 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ17742-cds]; exon [dvir_GLEANR_2310:3]; exon [dvir_GLEANR_2310:2]; CDS [Dvir\GJ17742-cds]; intron [Dvir\GJ17742-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
TGCTGGCTCTCGGCTTCGAGAAGATGGAGCGTGGCTCTTTGGCCGCAAAGGTAGCTATCAGAACCTTTGAACTCTATATAATATCCGATTATCCAGAGCATCTTTGTTGTTAGTACTTTGACCGTGCCAATCCCATGGAGCGCCACATCACCGAAATGGGTGA
**************************************************....(((.(((......((..((((..(((((.....)))))..))))))......))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 M061
embryo
 V047
embryo
 SRR060665
9_females_carcasses_total
 SRR060659
Argentina_testes_total
 M027
male body		 SRR060664
9_males_carcasses_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR1106728
larvae
 V053
head
 M028
head
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060678
9x140_testes_total
........CTCGGCTTCGAGAAGATGGA....................................................................................................................................... 20 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGAGAAGATGGAGCGTGG................................................................................................................................. 18 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGATGGAGCGTGGCTCTTTGGCCGCA.................................................................................................................... 26 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................GAAGATGGAGCGTGGCTCTT............................................................................................................................ 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GACCGTGCCAATCCCATGGAGCGCC................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGAGCGGGGCACTTTGGCCGCA.................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTCGAGAAGATGGAGCGTGGCTCTTT........................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CTCGGCTTCGAGAAGATGGAGC..................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AATCCCATGGAGCGCCACATCACCG.......... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GAGAAGATGGAGCGTGGCT............................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GGCTTCGAGAACATGGAGCGTGGCTCTTT........................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATCCCATGGAGCGCCACATC.............. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CGAGAAGATGGAGCGTGGCT............................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TCGGCTTCGAGAAGATGGA....................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CATGGATCGCCACATCAC............ 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GAGAAGATGGAGCGTGGCTCTTTGGC........................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TGGAGCGTGGCTCTTTGGC........................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GATGGAGCGTGGCTCTTTGG......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTGCCAATCCCATGGAGCGC.................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CTGGCTCTCGGCTTCGAGAA............................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GATGGAGCGTGGCTCTTTGGCCGC..................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGAGCGCCACATCACCGAAATGGGT.. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATAAAATCTGATTATCCAGA.................................................................. 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGCCACATCACCGAAATGGGTG. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................GAGAAGATGGAGCGTGGC................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TCGAGAAGATGGAGCGTGGCTCTTTGGCC....................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTGCCAATCCCATGGAGCGCCAC................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GACCGTGCCAATCCCATGGAG....................... 21 0 2 1.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GAGAAGATGGAGCGTGGCTCTTTGGCC....................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGGCTTCGAGAAGATGGA....................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....GGCTCTCGGCTTCGAGAAGATGGAGCGT................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATGGAGCGCCACATCACCGAAATGG.... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GGCTTCGAGAAGATGGAGCGTGGCT............................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AAGATGGAGCGTGGCTCCTTGGC........................................................................................................................ 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CTCGGCTTCGAGAAGATGTAGCGTGGCTC.............................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGATGGAGCGTGGCTCTTTGG......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GATGGAGCGTGGCTCTTTGAC........................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGAAGATGGAGCGTGGCTCTTTGGCC....................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGATGGAGCGTGGCTCTTTGGCC....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGTGCCAATCCCATGGAGCGCCACAT............... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGACCGTGCCAATCCCATGGAGCGCCAC................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATGGAGCGCCACATCACCGAA........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCCAATCCCATGGAGCGCCAC................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GAAGATGGAGCGTGGCTCTTTGGCC....................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GCTGGCTCTCGGCTTCGAGAAGATGG........................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TGAGAAGATGGAGCGTGGCTCTTTGAC........................................................................................................................ 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CAATCCCATGGAGCGCCAC................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGGCTCTCGGCTTCGAGAAGAACCAGCGT................................................................................................................................... 29 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CCCGGCTTCGAGAAGATGGAG...................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GACCGTGCCAATCCCATGG......................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGACCGTGCCAATCCCATGGAGC...................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CATCTTAGTGGTTAGTAC............................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CGCGGCTTCGAGAAGGTGGAGC..................................................................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GGTACTTTGACCGTGCCAATCC.............................. 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGTGCCAATCCCATGGAGC...................... 19 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGGCCGCAGCGGTAGCTATCT....................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................ATCTTTGTTGTTCGTCCT.............................................. 18 2 20 0.30 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 1 1 0
....................................CTTTGGCCGCCAAGGAAGGT........................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATTGAGCGTGGTTCTCTGGC........................................................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................CTTTGAAATCTAGATAATATCA............................................................................. 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................CATCTTTGTTGTTCGTCCT.............................................. 19 2 20 0.15 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..............................................................................................AGAGCAGCCTTGTTGTTA................................................... 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CATCTTTGTTGTTCGTCC............................................... 18 2 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................AGAGCAGCCTTGTTGTTAC.................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACGACCGAGAGCCGAAGCTCTTCTACCTCGCACCGAGAAACCGGCGTTTCCATCGATAGTCTTGGAAACTTGAGATATATTATAGGCTAATAGGTCTCGTAGAAACAACAATCATGAAACTGGCACGGTTAGGGTACCTCGCGGTGTAGTGGCTTTACCCACT
**************************************************....(((.(((......((..((((..(((((.....)))))..))))))......))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060665
9_females_carcasses_total
 M061
embryo
...........................................................................................AGGTCTCGGAGTAACAACAA.................................................... 20 2 1 2.00 2 2 0 0
............................................................................................................................ACGGTTAGGGTACCTCGCGGT.................. 21 0 1 1.00 1 0 1 0
................................................TCCGTCGATAGTCTTGGAAAC.............................................................................................. 21 1 2 0.50 1 1 0 0
...................................................................................................................................CGGTACCTCGCGCTGTAGT............. 19 2 2 0.50 1 0 0 1
...........................................................................................AGGTCTCGGAGTAACAAC...................................................... 18 2 11 0.27 3 3 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:17804814-17804976 + dvi_12414 TGCTGGCTCTCGGCTTCGAGAAGATGGAGCGTGGCTCTTTGGCCGCAAAGGTAGCTATCAGAACCTTTGAACTC----TAT----ATA---------------A-TA-TC------CGATT----ATC-----CAGAGCAT-CTTT-------------------------------------------------GTTGTTAGTACTTTGACCGTGCCAATCCCATGGAGCGCCACATCACCGAAATGGGTGA
droMoj3 scaffold_6500:26540041-26540201 + TCCTAGCTCTGGGATTTGAGAAAATGGAGCGTGGCTCGTTGGCGTCAAAGGTAGCTAGAGGAAACTTTCATCCC----CAT----ACA---------------A-TG-T---------C------ATCCATAACA---TTATCTTT-------------------------------------------------ATTGCTAGTACTTTGATCGTGCCAATCCCATGGAGCGTCACATTACCGAAATGGGAGA
droGri2 scaffold_15252:5909387-5909562 + TCCTTGCCTTGGGCTTCGAGAAAATGGAACGTGGCTCGTTGGCCGCGAAGGTATGTT--------AACGACTTTATATTTG----AACTTGCCCTGAACTGATAATACGTATACTT--AATACTTAT--------------TTTTT-------------------------------------------------ATTGATAGTACTTTGACCGGGCTAACCCTATGGAGCGACATATCACTGAAATGGGCGA
droWil2 scf2_1100000004521:10998639-10998796 + TTTTGGCTTTGGGATTTGAGAAGATGGAACGTGGTTCCCTCTCATCGAAGGTAATTG--------TGGA-TCA-------CAAAAGTA---------------TAAATG-------CTT----TAAAC-----T--AACGTCTTCG----------------------------------------------TCTAACCTTAGTACTTTGACCGTGCCAATCCCATGGAGCGCCACATCACAGAGATGGGTGA
dp5 4_group3:4837800-4837970 + TGCTGGCCCTGGGCTTCGAGAAGATGGAACGTGGCTCCCTGGGGGCAAAGGTAGGAA--------AC-G---------------------------------------C---------CT-------------------------TCTGTTTGTAATTCAGCTTATACGAATCTACTTATCTCTTGTATTCATGTACCAACAGTACTTTGACCGCGCCAACCCCATGGAGCGTCACATCACCGAGATGGGAGA
droPer2 scaffold_1:6312920-6313089 - TGCTGGCTCTGGGCTTCGAGAAGATGGAGCGTGGCTCTCTGGCGTCAAAGGTAGGAA--------ATCCG---------------------------------------------------------------------------TCTGCTTGGAATTATACTTAAACGAATCTTGTTATCGCCTGTGTTAATATACCAACAGTACTTTGACCGCGCCAACCCCATGGAGCGTCACATCACCGAGATGGGAGA
droAna3 scaffold_12916:8295576-8295733 + TCCTGGCATTGGGCTTCGAAAAAATGGAACGAGGATCCCTCTCCTCAAAGGTGAGTT--------TCTTCTCTT----CTA----ACT---------------ATAATC---------TC--TTGACC-----TTTAGCCTCT-TT-------------------------------------------T----GTTCAAAAGTACTTTGACCGTGCCAACCCCATGGAGCGTCACATCTCCGAGATGAGCGA
droBip1 scf7180000396728:21508-21665 + TGCTGGCATTAGGTTTTGAAAAAATGGAACGAGGATCCCTCTCTTCAAAGGTGAGTT--------TCATTAACC----CTT----GTT---------------AAAATT---------GT--TTGACC-----TTTGAGCTTTTTT------------------------------------------------ATTCAAAAGTACTTCGACCGTGCTAATCCCATGGAGCGCCACATCACCGAGATGAGCGA
droKik1 scf7180000302570:806657-806816 - TCCTGGCTCTGGGCTTCGAGAAGATGGAGCGGGGATCGCTGTCCTCCAAGGTGGGTAC-------TTATAGATC----CTC----ACC---------------AGTG-C---------CTGGATAACCTA---GATAACTC-CCCT-------------------------------------------------CCTTGCAGTACTTTGACCGAGCTAACCCCATGGAGCGTCACATCACGGAGATGGGCGA
droFic1 scf7180000454059:93496-93653 + TCTTGGCTGTGGGATTCGAGAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTACATC--------TTTTAAATT----CCA----TTC---------------AAACGT---------CTTAATAACC-----CATAACCTTA-TT-------------------------------------------------CCCTATAGTACTTTGACCGCGCCAATCCCATGGAGCGGCACATTACCGAGATGGGAGA
droEle1 scf7180000491046:4182516-4182673 - TCCTTGCCCTGGGATTCGAGAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTATATC--------AATAAGGTC----CTT----AAG---------------TAACCC---------CTAACTAACT-----CAGTTTTTC-CAT-------------------------------------------------TTCAATAGTATTTCGACCGCGCCAATCCCATGGAGCGACACATCACCGAGATGAGTGA
droRho1 scf7180000764475:42788-42937 - TCCTGGCTCTGGGATTCGAGAAGATGGAGCGTGGGTCCTTGTCTTCAAAGGTACATC--------AATAAAACC----CTT----ACA---------------AAAGCC---------GTTACTAATC-----CCG---------T-------------------------------------------------TTTCTTAGTACTTTGACCGCGCCAATCCCATGGAACGTCACATCACCGAGATGGGTGA
droBia1 scf7180000302422:4838067-4838225 + TCCTGGCCCTGGGATTCGAGAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTGAATC--------TATTAACCC----GGT----ATC---------------GAATCC---------ATTACTGACC-----CACTATACTCTCT-------------------------------------------------ACGAACAGTACTTTGATCGCGCCAATCCCATGGAGCGTCACATCACTGAAATGGGTGA
droTak1 scf7180000415385:80439-80594 + TCCTGGCTTTAGGATTCGAGAAGATGGAGCGTGGGTCCCTGTCCTCAAAGGTAGATC--------ACTTAACTC----CCT----ACC---------------AATTCC---------TTTACTCACT-----GAT---TCCATCC-------------------------------------------------ACCAATAGTACTTTGATCGCGCCAATCCCATGGAGCGTCACATCACCGAGATGGGTGA
droEug1 scf7180000409463:1162578-1162735 + TTTTGGCTTTGGGGTTTGAGAAGATGGAGCGTGGATCTCTTTCCTCAAAGGTACATT--------GCTCAGCTC----CCC----ACC---------------AAACCC---------TCTACTGATC-----CTTTAACCTT-TC-------------------------------------------------GTCCTTAGTACTTTGATCGTGCCAATCCCATGGAGCGCCATATCACCGAGATGGGTGA
dm3 chr2L:18830028-18830186 - TCCTGGCTCTGGGATTCGAAAAGATGGAGCGTGGATCATTGTCCGCAAAGGTACACG--------AGTCCACTT----CTA----AAA---------------AATCCA---------ATTACTGATC-----CATTATTTGCTCT-------------------------------------------------TCTAATAGTACTTTGATCGCGCAAATCCCATGGAGCGCCACATCACCGAGATGAGTGA
droSim2 2l:18385159-18385317 - TCCTGGCTTTGGGATTTGAAAAGATGGAGCGTGGATCCCTGTCCTCCAAGGTACAAG--------ATTGCATTC----CTT----AAA---------------AAACCG---------ATTACTAATC-----CATTATTTTCCCA-------------------------------------------------TCTAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATCACCGAGATGGGTGA
droSec2 scaffold_7:2458359-2458514 + TCCTGGCTCTGGGATTCGAAAAGATGGAGCGTGGATCATTGTCCTCAAAGGTACAAG--------AGTGCACTT----CTG----AAA---------------AATACG---------ACGACTGATC-----CAT---TTGCTCT-------------------------------------------------TCTAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATTACCGAAATGGGTGA
droYak3 2R:5344620-5344778 - TCTTAGCTCTAGGATTCGAAAAGATGGAGCGTGGTTCCCTGTCCTCAAAGGTACAAT--------AGTGCAGTC----CTT----ACA---------------AAACCT---------AATATTAATA-----CATTATTTCATTC-------------------------------------------------TCAAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATCACCGAGATGGGTGA
droEre2 scaffold_4845:5444300-5444457 - TCCTAGCTTTGGGATTCGAAAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTAAAAG--------TG-GCACTC----CTT----ACA---------------AAACCG---------ATTACTGATC-----CATTATTTGCTCT-------------------------------------------------TCTAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATCACCGAGATGAGTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGCTGGCTCTCGGCTTCGAGAAGATGGAGCGTGGCTCTTTGGCCGCAAAGGTAGCTATCAGAACCTTTGAACTC----TAT----ATA---------------A-TA-TC------CGATT----ATC-----CAGAGCAT-CTTT-------------------------------------------------GTTGTTAGTACTTTGACCGTGCCAATCCCATGGAGCGCCACATCACCGAAATGGGTGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........CTCGGCTTCGAGAAGATGGA.................................................................................................................................................................................................................................2012.002001000000000001000000000000000000000000000000000000000000000000
................CGAGAAGATGGAGCGTGG...........................................................................................................................................................................................................................1812.002000000000200000000000000000000000000000000000000000000000000000
.....................AGATGGAGCGTGGCTCTTTGGCCGCA..............................................................................................................................................................................................................2612.002001000000000000000000000001000000000000000000000000000000000000
...................GAAGATGGAGCGTGGCTCTT......................................................................................................................................................................................................................2012.002000000001000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GACCGTGCCAATCCCATGGAGCGCC...................2512.002001000000000000000000000000000000000000000000000000000000000010
..............TTCGAGAAGATGGAGCGTGGCTCTTT.....................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
........CTCGGCTTCGAGAAGATGGAGC...............................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................AATCCCATGGAGCGCCACATCACCG..........2511.001000000000000000100000000000000000000000000000000000000000000000
.................GAGAAGATGGAGCGTGGCT.........................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................ATCCCATGGAGCGCCACATC..............2011.001000000000000000000000000000000000000000000000000000000000000010
................CGAGAAGATGGAGCGTGGCT.........................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........TCGGCTTCGAGAAGATGGA.................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.................GAGAAGATGGAGCGTGGCTCTTTGGC..................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
........................TGGAGCGTGGCTCTTTGGC..................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................GATGGAGCGTGGCTCTTTGG...................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GTGCCAATCCCATGGAGCGC....................2011.001000000000000000000000000000000000000000000000000000000000001000
..CTGGCTCTCGGCTTCGAGAA.......................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................GATGGAGCGTGGCTCTTTGGCCGC...............................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGGAGCGCCACATCACCGAAATGGGT..2611.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................CGCCACATCACCGAAATGGGTG.2211.001000000000000000000000000000000000000000000000000000000001000000
.................GAGAAGATGGAGCGTGGC..........................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
...............TCGAGAAGATGGAGCGTGGCTCTTTGGCC.................................................................................................................................................................................................................2911.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GTGCCAATCCCATGGAGCGCCAC.................2311.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................GACCGTGCCAATCCCATGGAG.......................2121.002001000000000000100000000000000000000000000000000000000000000000
.................GAGAAGATGGAGCGTGGCTCTTTGGCC.................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
..........CGGCTTCGAGAAGATGGA.................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000100000000000000000000000
....GGCTCTCGGCTTCGAGAAGATGGAGCGT.............................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................ATGGAGCGCCACATCACCGAAATGG....2511.001001000000000000000000000000000000000000000000000000000000000000
...........GGCTTCGAGAAGATGGAGCGTGGCT.........................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.....................AGATGGAGCGTGGCTCTTTGG...................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................AGAAGATGGAGCGTGGCTCTTTGGCC.................................................................................................................................................................................................................2611.001000000000100000000000000000000000000000000000000000000000000000
.....................AGATGGAGCGTGGCTCTTTGGCC.................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................CGTGCCAATCCCATGGAGCGCCACAT...............2611.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TGACCGTGCCAATCCCATGGAGCGCCAC.................2811.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................ATGGAGCGCCACATCACCGAA........2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................GCCAATCCCATGGAGCGCCAC.................2111.001001000000000000000000000000000000000000000000000000000000000000
...................GAAGATGGAGCGTGGCTCTTTGGCC.................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.GCTGGCTCTCGGCTTCGAGAAGATGG..................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CAATCCCATGGAGCGCCAC.................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GACCGTGCCAATCCCATGG.........................1920.501001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TGACCGTGCCAATCCCATGGAGC......................2320.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CGTGCCAATCCCATGGAGC......................1920.501000000000000000100000000000000000000000000000000000000000000000
droMoj3
TCCTAGCTCTGGGATTTGAGAAAATGGAGCGTGGCTCGTTGGCGTCAAAGGTAGCTAGAGGAAACTTTCATCCC----CAT----ACA---------------A-TG-T---------C------ATCCATAACA---TTATCTTT-------------------------------------------------ATTGCTAGTACTTTGATCGTGCCAATCCCATGGAGCGTCACATTACCGAAATGGGAGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................ATCCATAACA---TTATCTTT-------------------------------------------------ATTGCTAG..................................................2611.001100000
...................GAAAATGGAGCGTGGCTCGTTGGCGT................................................................................................................................................................................................................2620.501100000
............................GCGTGGCTCGTTGGCGTCA..............................................................................................................................................................................................................1920.501001000
............................................................................................................................................................................................................ACTTTGATCGTGCCAATCCCATGGAGC......................2720.501000001
........CTGGGATTTGAGAAAATGGAGC...............................................................................................................................................................................................................................2220.501100000
.............ATTTGAGAAAATGGAGCGTG............................................................................................................................................................................................................................2020.501000001
...............TTGAGAAAATGGAGCGTGGCTC........................................................................................................................................................................................................................2220.501000100
.......................................................................................................................................................................................................................................GTCACATTACCGAAATGGGAGA2220.501000001
......................AATGGAGCGTGGCTCGTTGGC..................................................................................................................................................................................................................2120.501000001
droGri2
TCCTTGCCTTGGGCTTCGAGAAAATGGAACGTGGCTCGTTGGCCGCGAAGGTATGTT--------AACGACTTTATATTTG----AACTTGCCCTGAACTGATAATACGTATACTT--AATACTTAT--------------TTTTT-------------------------------------------------ATTGATAGTACTTTGACCGGGCTAACCCTATGGAGCGACATATCACTGAAATGGGCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................ACCGGGCTAACCCTATGGAGCG.....................2221.00220
................................GGCTCGTTGGCCGCGAAGT..........................................................................................................................................................................................................1911.00110
.....................................................................................................ATAATACGTATACTT--AATACT.................................................................................................................................2120.50110
...............................................................................................................................................................................................................TTGACCGGGCTAACCCTA............................1820.50110
.........................................................................................................................................................................................................................TAACCCTATGGAGCGACATATCACT...........2520.50101
..................................................................................................................................................................................................................ACCGGGCTAACCCTATGGAGC......................2120.50110
......................AATGGAACGTGGCTCGTTGGCCGCG..............................................................................................................................................................................................................2520.50110
.CCTTGCCTTGGGCTTCGAG.........................................................................................................................................................................................................................................1920.50110
................................................................................................................................................................................................................................ATGGAGCGACATATCACTGAAATG.....2420.50110
..................................................................................................................................................................................................................ACCGGGCTAACCCTATGGA........................1920.50110
........................TGGAACGTGGCTCGTTGGC..................................................................................................................................................................................................................1920.50110
droWil2
TTTTGGCTTTGGGATTTGAGAAGATGGAACGTGGTTCCCTCTCATCGAAGGTAATTG--------TGGA-TCA-------CAAAAGTA---------------TAAATG-------CTT----TAAAC-----T--AACGTCTTCG----------------------------------------------TCTAACCTTAGTACTTTGACCGTGCCAATCCCATGGAGCGCCACATCACAGAGATGGGTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......TTTGGGATTTGAGAAGATGG..................................................................................................................................................................................................................................2022.50500410
................................................................................................................................................................................................................................ATGGAGCGCCACATCACA...........1812.00200020
........TTGGGATTTGAGAAGATGG..................................................................................................................................................................................................................................1921.50300120
TTTTGGCTTTGGGATTTGAGAAGA.....................................................................................................................................................................................................................................2411.00100100
......CTTTGGGATTTGAGAAGATGG..................................................................................................................................................................................................................................2121.00201010
.................................................................................................................................................................................................................GACCGTGCCAATCCCATGGAGCGCC...................2511.00101000
....................................................................................................................................................................................................................CGTGCCAATCCCATGGAGCGCCA..................2311.00100010
.......TTTGGGATTTGAGAAGATGGA.................................................................................................................................................................................................................................2121.00200002
.............................................................................................................................................................................................................................CCCATGGAGCGCCACATCACAG..........2211.00100001
..TTGGCTTTGGGATTTGAGAAGATG...................................................................................................................................................................................................................................2411.00100100
.......................................................................................................................................................................................................................GCCAATCCCATGGAGCGCCA..................2011.00100010
......CTTTGGGATTTGAGAAGAT....................................................................................................................................................................................................................................1920.50100100
............................ACGTGGTTCCCTCTCATCGAAGTA.........................................................................................................................................................................................................2420.50100010
..............................................................................................................................................................................................................TTTGACCGTGCCAATCCCATGGAGC......................2520.50100100
....GGCTTTGGGATTTGAGAAGATG...................................................................................................................................................................................................................................2220.50100100
.....GCTTTGGGATTTGAGAAGATGG..................................................................................................................................................................................................................................2220.50100100
.....GCTTTGGGATTTGAGAAGAT....................................................................................................................................................................................................................................2020.50100100
............................ACGTGGTTCCCTCTCATCGAA............................................................................................................................................................................................................2120.50101000
..............................................................................................................................................................................................................TTTGACCGTGCCAATCCCA............................1920.50110000
..............TTTGAGAAGATGGAACGTGGTTCCCT.....................................................................................................................................................................................................................2620.50100100
.........TGGGATTTGAGAAGATGGAA................................................................................................................................................................................................................................2020.50100100
..............TTTGAGAAGATGGAACGTGGTTCCCTCT...................................................................................................................................................................................................................2820.50100010
............GATTTGAGAAGATGGAACGTGGTTCCCT.....................................................................................................................................................................................................................2820.50100100
.............ATTTGAGAAGATGGAACGTGGTTCCCT.....................................................................................................................................................................................................................2720.50100100
..................AGAAGATGGAACGTGGTTCCCT.....................................................................................................................................................................................................................2220.50100001
......CTTTGGGATTTGAGAAGATGGAACGTGGT..........................................................................................................................................................................................................................2920.50100100
........TTGGGATTTGAGAAGATGGA.................................................................................................................................................................................................................................2020.50100010
....GGCTTTGGGATTTGAGAAGATGG..................................................................................................................................................................................................................................2320.50100100
.........TGGGATTTGAGAAGATGG..................................................................................................................................................................................................................................1820.50100010
...........................AACGTGGTTCCCTCTCATCGAAGTA.........................................................................................................................................................................................................2520.50100010
dp5
TGCTGGCCCTGGGCTTCGAGAAGATGGAACGTGGCTCCCTGGGGGCAAAGGTAGGAA--------AC-G---------------------------------------C---------CT-------------------------TCTGTTTGTAATTCAGCTTATACGAATCTACTTATCTCTTGTATTCATGTACCAACAGTACTTTGACCGCGCCAACCCCATGGAGCGTCACATCACCGAGATGGGAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................GTACTTTGACCGCGCCAACCCCATGG.........................2611.0010100000000
..........................GAACGTGGCTCCCTGGGGGCAAA............................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................TGACCGCGCCAACCCCATGGA........................2111.0010100000000
..........................................................................................................................................................................................................................AACCCCATGGAGCGTCAC.................1811.0010100000000
.................................................................................................................................................................................................................GACCGCGCCAACCCCATGGAGCGTC...................2511.0010100000000
.....................................................................................................................................................................................................................................GCGTCACATCACCGAGATG.....1911.0010100000000
......................GATGGAACGTGGCTCCCTGG...................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................ACTTTGACCGCGCCAACCCCATG..........................2311.0010100000000
............................................................................................................................................................................................................ACTTTGACCGCGCCAACCCC.............................2011.0010100000000
....GGCCCTGGGCTTCGAGAAGATGG..................................................................................................................................................................................................................................2311.0010000000001
....................................................................................................................................................................................................................................AGCGTCACATCACCGAGATGGGA..2311.0010100000000
...............................................................................................................................................................................................................................CATGGAGCGTCACATCACCGA.........2111.0010100000000
.......................ATGGAACGTGGCTCCCTGGGGGC...............................................................................................................................................................................................................2311.0010000000001
...............TCGAGAAGATGGAACGTGGCTCCCTG....................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................GACCGCGCCAACCCCATGGA........................2011.0010100000000
.................GAGAAGATGGAACGTGGCTCCCTGG...................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................CAACCCCATGGAGCGTCAC.................1911.0010000100000
...................................................................................................................................................................................................................CCGCGCCAACCCCATGGAGC......................2011.0010000100000
...................GAAGATGGAACGTGGCTCCCTGGG..................................................................................................................................................................................................................2411.0010100000000
.....................AGATGGAACGTGGCTCCCTGG...................................................................................................................................................................................................................2111.0010100000000
.....................AGATGGAACGTGGCTCCCTGGGG.................................................................................................................................................................................................................2311.0010100000000
..........................................................................................................................................................................................................GTACTTTGACCGCGCCAACCCCATGGA........................2711.0010100000000
............................ACGTGGCTCCCTGGGGGCAAAGT..........................................................................................................................................................................................................2311.0010000010000
.........................GGAACGTGGCTCCCTGGG..................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................................................TACTTTGACCGCGCCAACCCCATG..........................2411.0010100000000
droPer2
TGCTGGCTCTGGGCTTCGAGAAGATGGAGCGTGGCTCTCTGGCGTCAAAGGTAGGAA--------ATCCG---------------------------------------------------------------------------TCTGCTTGGAATTATACTTAAACGAATCTTGTTATCGCCTGTGTTAATATACCAACAGTACTTTGACCGCGCCAACCCCATGGAGCGTCACATCACCGAGATGGGAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...TGGCTCTGGGCTTCGAGAAG......................................................................................................................................................................................................................................2020.501000001
.............................CGTGGCTCTCTGGCGTCA..............................................................................................................................................................................................................1830.331100000
...........................AGCGTGGCTCTCTGGCGTC...............................................................................................................................................................................................................1930.331100000
...........................AGCGTGGCTCTCTGGCGTCAAAGT..........................................................................................................................................................................................................2430.331100000
...............TCGAGAAGATGGAGCGTGGCTCTCTGGC..................................................................................................................................................................................................................2830.331000001
.......TCTGGGCTTCGAGAAGATGGAGCGTGGCT.........................................................................................................................................................................................................................2930.331100000
................................................................................................................................................................................................................................ATGGAGCGTCACATCACCGAGA.......2240.251001000
..........................................................................................................................................................................................................GTACTTTGACCGCGCCAACCCCAT...........................2440.251100000
.........................................................................................................................................................................................................................CAACCCCATGGAGCGTCAC.................1940.251010000
.......................................................................................................................................................................................................................................GTCACATCACCGAGATGGGAG.2140.251010000
................CGAGAAGATGGAGCGTGGC..........................................................................................................................................................................................................................1940.251000001
droAna3
TCCTGGCATTGGGCTTCGAAAAAATGGAACGAGGATCCCTCTCCTCAAAGGTGAGTT--------TCTTCTCTT----CTA----ACT---------------ATAATC---------TC--TTGACC-----TTTAGCCTCT-TT-------------------------------------------T----GTTCAAAAGTACTTTGACCGTGCCAACCCCATGGAGCGTCACATCTCCGAGATGAGCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................GTCACATCTCCGAGATGAGC..2023.006021030
................................................................................................................................................................................................................................ATGGAGCGTCACATCTCCGAGATGAGC..2723.006030030
......................AATGGAACGAGGATCCCTCTCC.................................................................................................................................................................................................................2221.503110001
.......................ATGGAACGAGGATCCCTCTCC.................................................................................................................................................................................................................2121.503000003
....GGCATTGGGCTTCGAAAAA......................................................................................................................................................................................................................................1921.002200000
.................................................................................................................................................................................................................................TGGAGCGTCACATCTCCGAGATGAGCG.2721.002000011
.......ATTGGGCTTCGAAAAAATGGAACGAGG...........................................................................................................................................................................................................................2721.002000011
......................................................................................................................................................................................................................................CGTCACATCTCCGAGATGAGC..2121.002000011
.....................AAATGGAACGAGGATCCCTC....................................................................................................................................................................................................................2021.002020000
....................................................................................................................................................................................................................................AGCGTCACATCTCCGAGATGAGC..2320.501010000
......................AATGGAACGAGGATCCCTCTCCTCAAAG...........................................................................................................................................................................................................2820.501100000
.................................................................................................................................................................................................................GACCGTGCCAACCCCATGGAGC......................2220.501000001
.......ATTGGGCTTCGAAAAAAT....................................................................................................................................................................................................................................1820.501100000
.................................................................................................................................................................................................................................TGGAGCGTCACATCTCCGAGAT......2220.501010000
.....GCATTGGGCTTCGAAAAAATGG..................................................................................................................................................................................................................................2220.501000010
......CATTGGGCTTCGAAAAAATGGAACGA.............................................................................................................................................................................................................................2620.501010000
.............................................................................................................................................................................................................CTTTGACCGTGCCAACCCCATGGA........................2420.501001000
...................................................................................................................................................................................................................................GAGCGTCACATCTCCGAGATGAGC..2420.501010000
.....GCATTGGGCTTCGAAAAAATGGAACG..............................................................................................................................................................................................................................2620.501000010
.........................GGAACGAGGATCCCTCTCCT................................................................................................................................................................................................................2020.501100000
..CTGGCATTGGGCTTCGAAAAAATGGAAC...............................................................................................................................................................................................................................2820.501010000
.......................................................................................................................................................................................................................GCCAACCCCATGGAGCGTCACATCTCC...........2720.501100000
...............................................................................................................................................................................................................TTGACCGTGCCAACCCCATGGAGC......................2420.501001000
........................................................................................................................................................................................................................CCAACCCCATGGAGCGTCACATCTCCGA.........2820.501100000
.....................................................................................................................................................................................................................GTGCCAACCCCATGGAGC......................1820.501010000
.......ATTGGGCTTCGAAAAAATGGAACGA.............................................................................................................................................................................................................................2520.501000001
.....................................................................................................................................................................................................................................GCGTCACATCTCCGAGATGAGC..2220.501000010
.........................................................................................................................................................................................................AGTACTTTGACCGTGCCAACCCC.............................2320.501010000
...............................................................................................................................................................................................................................CATGGAGCGTCACATCTCCGAGATGAGC..2820.501000001
................................................................................................................................................................................................................................ATGGAGCGTCACATCTCCGAGATGAGCG.2820.501000010
.....................................................................................................................................................................................................................GTGCCAACCCCATGGAGCGTC...................2120.501100000
..........................................................................................................................................................................................................................AACCCCATGGAGCGTCACATCTCC...........2420.501010000
......................AATGGAACGAGGATCCCTCTC..................................................................................................................................................................................................................2120.501000100
........................................................................................................................................................................................................................CCAACCCCATGGAGCGTCACATC..............2320.501000010
....GGCATTGGGCTTCGAAAAAATGGAACG..............................................................................................................................................................................................................................2720.501100000
....................AAAATGGAACGAGGATCCCT.....................................................................................................................................................................................................................2020.501001000
............GCTTCGAAAAAATGGAACG..............................................................................................................................................................................................................................1920.501000010
....................AAAATGGAACGAGGATCCCTCTC..................................................................................................................................................................................................................2320.501010000
.....................AAATGGAACGAGGATCCG......................................................................................................................................................................................................................1820.501000100
....................................................................................................................................................................................................................CGTGCCAACCCCATGGAGC......................1920.501010000
...TGGCATTGGGCTTCGAAAAA......................................................................................................................................................................................................................................2020.501100000
droBip1
TGCTGGCATTAGGTTTTGAAAAAATGGAACGAGGATCCCTCTCTTCAAAGGTGAGTT--------TCATTAACC----CTT----GTT---------------AAAATT---------GT--TTGACC-----TTTGAGCTTTTTT------------------------------------------------ATTCAAAAGTACTTCGACCGTGCTAATCCCATGGAGCGCCACATCACCGAGATGAGCGASizeHit CountTotal NormTotal
No Reads
droKik1
TCCTGGCTCTGGGCTTCGAGAAGATGGAGCGGGGATCGCTGTCCTCCAAGGTGGGTAC-------TTATAGATC----CTC----ACC---------------AGTG-C---------CTGGATAACCTA---GATAACTC-CCCT-------------------------------------------------CCTTGCAGTACTTTGACCGAGCTAACCCCATGGAGCGTCACATCACGGAGATGGGCGASizeHit CountTotal NormTotal
No Reads
droFic1
TCTTGGCTGTGGGATTCGAGAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTACATC--------TTTTAAATT----CCA----TTC---------------AAACGT---------CTTAATAACC-----CATAACCTTA-TT-------------------------------------------------CCCTATAGTACTTTGACCGCGCCAATCCCATGGAGCGGCACATTACCGAGATGGGAGASizeHit CountTotal NormTotal
No Reads
droEle1
TCCTTGCCCTGGGATTCGAGAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTATATC--------AATAAGGTC----CTT----AAG---------------TAACCC---------CTAACTAACT-----CAGTTTTTC-CAT-------------------------------------------------TTCAATAGTATTTCGACCGCGCCAATCCCATGGAGCGACACATCACCGAGATGAGTGASizeHit CountTotal NormTotal
No Reads
droRho1
TCCTGGCTCTGGGATTCGAGAAGATGGAGCGTGGGTCCTTGTCTTCAAAGGTACATC--------AATAAAACC----CTT----ACA---------------AAAGCC---------GTTACTAATC-----CCG---------T-------------------------------------------------TTTCTTAGTACTTTGACCGCGCCAATCCCATGGAACGTCACATCACCGAGATGGGTGASizeHit CountTotal NormTotal
No Reads
droBia1
TCCTGGCCCTGGGATTCGAGAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTGAATC--------TATTAACCC----GGT----ATC---------------GAATCC---------ATTACTGACC-----CACTATACTCTCT-------------------------------------------------ACGAACAGTACTTTGATCGCGCCAATCCCATGGAGCGTCACATCACTGAAATGGGTGASizeHit CountTotal NormTotal
No Reads
droTak1
TCCTGGCTTTAGGATTCGAGAAGATGGAGCGTGGGTCCCTGTCCTCAAAGGTAGATC--------ACTTAACTC----CCT----ACC---------------AATTCC---------TTTACTCACT-----GAT---TCCATCC-------------------------------------------------ACCAATAGTACTTTGATCGCGCCAATCCCATGGAGCGTCACATCACCGAGATGGGTGASizeHit CountTotal NormTotal
No Reads
droEug1
TTTTGGCTTTGGGGTTTGAGAAGATGGAGCGTGGATCTCTTTCCTCAAAGGTACATT--------GCTCAGCTC----CCC----ACC---------------AAACCC---------TCTACTGATC-----CTTTAACCTT-TC-------------------------------------------------GTCCTTAGTACTTTGATCGTGCCAATCCCATGGAGCGCCATATCACCGAGATGGGTGASizeHit CountTotal NormTotal
No Reads
dm3
TCCTGGCTCTGGGATTCGAAAAGATGGAGCGTGGATCATTGTCCGCAAAGGTACACG--------AGTCCACTT----CTA----AAA---------------AATCCA---------ATTACTGATC-----CATTATTTGCTCT-------------------------------------------------TCTAATAGTACTTTGATCGCGCAAATCCCATGGAGCGCCACATCACCGAGATGAGTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................TGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................20117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001050000000
......................GATGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................22111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010550000000
.......................ATGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000910000000
...................AAAGATGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000530000000
.....................AGATGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000340000000
......................GATGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000
.........................GGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000
.................GAAAAGATGGAGCGTGGATCATTGT...................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000
......................GATGGAGCGTGGATCATTGTCCGCA..............................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000
........................................................................................................................................................................................................................................CCACATCACCGAGATGAGTGA2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000100000
........................TGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220000000
..................AAAAGATGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000
.........................................................................................................................................................................................................................AAATCCCATGGAGCGCCACATC..............2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000
.......................ATGGAGCGTGGATCATTGT...................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
.......................ATGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000
....................AAGATGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000
.............ATTCGAAAAGATGGAGCGTGGAT.........................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................CATGGAGCGCCACATCACCGA.........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..CTGGCTCTGGGATTCGAAAAG......................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ACTTTGATCGCGCAAATCCCATGGA........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAAAAGATGGAGCGTG............................................................................................................................................................................................................................1712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGGCTCTGGGATTCGAAAAGATGGAG................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TCCCATGGAGCGCCACATCACCGAGA.......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
............GATTCGAAAAGATGGAGCGTG............................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000
....................AAGATGGAGCGTGGATCATTGT...................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTCGAAAAGATGGAGCGTGGATC........................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................ATGGAGCGCCACATCACCGA.........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000
...................................................................................................................................................................................................................TCGCGCAAATCCCATGGAGCG.....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGGAGCGTGGATCATTGTCCG................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000
...................AAAGATGGAGCGTGGATCATTGTCCGCA..............................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
.......................ATGGAGCGTGGATCATTGTCCGC...............................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................AAAGATGGAGCGTGGATC........................................................................................................................................................................................................................1821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000
.CCTGGCTCTGGGATTCGAAAAGATGGA.................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAAAAGATGGAGCGTGGATC........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGCGTGGATCATTGTCCGCAA.............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GCGCAAATCCCATGGAGCGC....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCGAAAAGATGGAGCGTG............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GGCTCTGGGATTCGAAAAGATGGA.................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................ATTGTCCGCAAAGGTACACG--------AGTCCACTT----...............................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAAAAGATGGAGCGTGGATCATTGT...................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................AAAAGATGGAGCGTGGAT.........................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000
....................AAGATGGAGCGTGGATCATTGTCCGC...............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................CGAAAAGATGGAGCGTGGATCAT......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GTACTTTGATCGCGCAAATCC..............................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................GCAAATCCCATGGAGCGCCACATC..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................CGCAAATCCCATGGAGCGCCAC.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........TGGGATTCGAAAAGATGGAGC...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGGAGCGTGGATCATTGTCCGCA..............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................AAAGATGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................GATGGAGCGTGGATCATTGT...................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................AGATGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................GCAAATCCCATGGAGCGCCA..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AAATCCCATGGAGCGCCA..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCCTGGCTCTGGGATTCGAAAAGATGGA.................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CATGGAGCGCCACATCACCGAGATGAG...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................TCCCATGGAGCGCCACATC..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................CATGGAGCGCCACATCACC...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............TTCGAAAAGATGGAGCGTGGATCATTG....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTGATCGCGCAAATCCCA............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTGATCGCGCAAATCCCATGG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................AGATGGAGCGTGGATCATTGTCCGCAA.............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CACATCACCGAGATGAGT..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAAAAGATGGAGCGTGG...........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATTCGAAAAGATGGAGCGTGG...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GATGGAGCGTGGATCATTGTCCGC...............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................TTGATCGCGCAAATCCCATGGAG.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................GCGCAAATCCCATGGAGCGCCA..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAGATGGAGCGTGGATCATTGTCCG................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................ATCCCATGGAGCGCCACATCACCGAG........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................AGATGGAGCGTGGATCAT......................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CATGGAGCGCCACATCACCGAGA.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................AAAGATGGAGCGTGGATCATTGTCCG................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TACTTTGATCGCGCAAATCCCATGGAG.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................AAATCCCATGGAGCGCCACATCACCG..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................GATGGAGCGTGGATCAT......................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATCGCGCAAATCCCATGGAGC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGGCTCTGGGATTCGAAAAGA.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATTCGAAAAGATGGAGCGT.............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATTCGAAAAGATGGAGC...............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GCGCAAATCCCATGGAGCGCCAC.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.......TCTGGGATTCGAAAAGATGGA.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................GATGGAGCGTGGATCATTGTCCGCAG.............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATTCGAAAAGATGGAGCGTGGAG.........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................GCAAATCCCATGGAGCGCC...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................TACTTTGATCGCGCAAATCCCATGGA........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TCGCGCAAATCCCATGGAGCGCCAC.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TACTTTGATCGCGCAAATCCCA............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AAATCCCATGGAGCGCCACAT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTCGAAAAGATGGAGCGTGGATCATT.....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................AAAAGATGGAGCGTGGATC........................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droSim2
TCCTGGCTTTGGGATTTGAAAAGATGGAGCGTGGATCCCTGTCCTCCAAGGTACAAG--------ATTGCATTC----CTT----AAA---------------AAACCG---------ATTACTAATC-----CATTATTTTCCCA-------------------------------------------------TCTAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATCACCGAGATGGGTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................TAATAGTACTTTGATCGCGCC...................................2111.00110000000000000000
.............................................................................................................................................................................................................CTTTGATCGCGCCAATCCCATGGAG.......................2520.50101000000000000000
...........................................................................................................................................................................................................TACTTTGATCGCGCCAAT................................1820.50100000010000000000
.........................................................................................................................................................................................................AGTACTTTGATCGCGCCAATCCC.............................2320.50100100000000000000
droSec2
TCCTGGCTCTGGGATTCGAAAAGATGGAGCGTGGATCATTGTCCTCAAAGGTACAAG--------AGTGCACTT----CTG----AAA---------------AATACG---------ACGACTGATC-----CAT---TTGCTCT-------------------------------------------------TCTAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATTACCGAAATGGGTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........CTGGGATTCGAAAAGATGGAGC...............................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................................................TCCCATGGAGCGCCACATT..............1911.0010010
...............................................................................................................................................................................................................................CATGGAGCGCCACATTACC...........1911.0010010
.............................................................................................................................................................................................................CTTTGATCGCGCCAATCCCATGG.........................2320.5010010
.................................................................................................................................................................................................................GATCGCGCCAATCCCATGGA........................2020.5010010
.....................AGATGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................2220.5010010
...............................................................................................................................................................................................................TTGATCGCGCCAATCCCATGG.........................2120.5010001
..............TTCGAAAAGATGGAGCGTGGATC........................................................................................................................................................................................................................2320.5010010
....................................................................................................................................................................................................................CGCGCCAATCCCATGGAGCGC....................2120.5010010
..................AAAAGATGGAGCGTGGAT.........................................................................................................................................................................................................................1820.5011000
.......................ATGGAGCGTGGATCATTGTCCTCAAAG...........................................................................................................................................................................................................2720.5010100
............GATTCGAAAAGATGGAGCGT.............................................................................................................................................................................................................................2020.5010010
....................AAGATGGAGCGTGGATCATT.....................................................................................................................................................................................................................2020.5010010
.............ATTCGAAAAGATGGAGCGTGGAT.........................................................................................................................................................................................................................2320.5011000
..................AAAAGATGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................2520.5010010
.......................ATGGAGCGTGGATCATTGT...................................................................................................................................................................................................................1920.5010010
.......................ATGGAGCGTGGATCATTGTCCTC...............................................................................................................................................................................................................2320.5011000
..................AAAAGATGGAGCGTGGATCATTGTCC.................................................................................................................................................................................................................2620.5010010
.............ATTCGAAAAGATGGAGCGTGG...........................................................................................................................................................................................................................2120.5010001
................CGAAAAGATGGAGCGTGGAT.........................................................................................................................................................................................................................2020.5010010
...................AAAGATGGAGCGTGGATCATTGTC..................................................................................................................................................................................................................2420.5010100
droYak3
TCTTAGCTCTAGGATTCGAAAAGATGGAGCGTGGTTCCCTGTCCTCAAAGGTACAAT--------AGTGCAGTC----CTT----ACA---------------AAACCT---------AATATTAATA-----CATTATTTCATTC-------------------------------------------------TCAAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATCACCGAGATGGGTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................GATGGAGCGTGGTTCCCTGTC..................................................................................................................................................................................................................2114.00401000030000
......................GATGGAGCGTGGTTCCCTGTCCT................................................................................................................................................................................................................2312.00200000020000
........CTAGGATTCGAAAAGATGGAGCGTGGT..........................................................................................................................................................................................................................2712.00201000010000
........CTAGGATTCGAAAAGATGGAGCGT.............................................................................................................................................................................................................................2411.00100000100000
.............................CGTGGTTCCCTGTCCTCAAAGTAC........................................................................................................................................................................................................2411.00101000000000
................................................................................................................................................................................................................................ATGGAGCGCCACATCACCGAGATGGGT..2721.00200000020000
............GATTCGAAAAGATGGAGCGTGGT..........................................................................................................................................................................................................................2311.00100001000000
...TAGCTCTAGGATTCGAAAAGATG...................................................................................................................................................................................................................................2311.00100000010000
....................AAGATGGAGCGTGGTTCCCTGTCCTC...............................................................................................................................................................................................................2611.00100000010000
....................AAGATGGAGCGTGGTTCCCT.....................................................................................................................................................................................................................2011.00100000010000
.CTTAGCTCTAGGATTCGAAAAGATGGAGC...............................................................................................................................................................................................................................2911.00100000010000
................CGAAAAGATGGAGCGTGGTTCCCT.....................................................................................................................................................................................................................2411.00100000010000
...................AAAGATGGAGCGTGGTTCCCTG....................................................................................................................................................................................................................2211.00100000010000
.............ATTCGAAAAGATGGAGCGTGGTT.........................................................................................................................................................................................................................2311.00101000000000
.CTTAGCTCTAGGATTCGAAAAGATGGAG................................................................................................................................................................................................................................2811.00100000010000
..................................................................................................................................................................................................................................GGAGCGCCACATCACCGAGATG.....2221.00201100000000
........CTAGGATTCGAAAAGATGGAGCGTG............................................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................AAATAGTACTTTGATCGCGC....................................2011.00100000010000
..............TTCGAAAAGATGGAGCGTGGTTCCCTGTC..................................................................................................................................................................................................................2911.00100000010000
........CTAGGATTCGAAAAGATGGAGCGTGGTT.........................................................................................................................................................................................................................2811.00100000010000
...TAGCTCTAGGATTCGAAAAGAT....................................................................................................................................................................................................................................2211.00100000010000
........CTAGGATTCGAAAAGATGGAGC...............................................................................................................................................................................................................................2211.00100100000000
..............TTCGAAAAGATGGAGCGTGGTTCCCT.....................................................................................................................................................................................................................2611.00100000010000
...................AAAGATGGAGCGTGGTTCCCT.....................................................................................................................................................................................................................2111.00100000010000
.......................ATGGAGCGTGGTTCCCTGTCCT................................................................................................................................................................................................................2211.00100000010000
.................GAAAAGATGGAGCGTGGT..........................................................................................................................................................................................................................1811.00100000010000
................CGAAAAGATGGAGCGTGGTTCCCTG....................................................................................................................................................................................................................2511.00101000000000
....................AAGATGGAGCGTGGTTCCCTGTCCTCAAA............................................................................................................................................................................................................2911.00100000010000
...............TCGAAAAGATGGAGCGTGGTTCCCT.....................................................................................................................................................................................................................2511.00100000010000
.........................................................................................................................................................................................................AGTACTTTGATCGCGCCAATCCCATGGA........................2820.50101000000000
......................................................................................................................................................................................................................CGCCAATCCCATGGAGCGCCACATCAC............2720.50100000010000
....................................................................................................................................................................................................................................AGCGCCACATCACCGAGATGGGTG.2420.50101000000000
..................................................................................................................................................................................................................ATCGCGCCAATCCCATGGAGCGCCACA................2720.50101000000000
.......................................................................................................................................................................................................................................GCCACATCACCGAGATGGGTGA2220.50101000000000
............GATTCGAAAAGATGGAGCGT.............................................................................................................................................................................................................................2020.50101000000000
.................................................................................................................................................................................................................................TGGAGCGCCACATCACCGA.........1920.50100000010000
..............................................................................................................................................................................................................TTTGATCGCGCCAATCCCATGGA........................2320.50101000000000
............GATTCGAAAAGATGGAGCGTG............................................................................................................................................................................................................................2120.50100000010000
...........GGATTCGAAAAGATGGAGCGT.............................................................................................................................................................................................................................2120.50100000010000
..............TTCGAAAAGATGGAGCGTG............................................................................................................................................................................................................................1920.50100000010000
.............ATTCGAAAAGATGGAGCGT.............................................................................................................................................................................................................................1920.50100000010000
................................................................................................................................................................................................................................ATGGAGCGCCACATCACCGAGATGG....2520.50100000010000
...............................................................................................................................................................................................................................CATGGAGCGCCACATCACCGA.........2120.50100010000000
..........................................................................................................................................................................................................GTACTTTGATCGCGCCAATCCCA............................2320.50101000000000
.................................................................................................................................................................................................................GATCGCGCCAATCCCATGGAGC......................2220.50101000000000
...........................................................................................................................................................................................................TACTTTGATCGCGCCAATCCCA............................2220.50100010000000
..........................................................................................................................................................................................................GTACTTTGATCGCGCCAATCCCATGGAG.......................2820.50101000000000
.............ATTCGAAAAGATGGAGCGTGG...........................................................................................................................................................................................................................2120.50100000010000
droEre2
TCCTAGCTTTGGGATTCGAAAAGATGGAGCGTGGATCCCTGTCCTCAAAGGTAAAAG--------TG-GCACTC----CTT----ACA---------------AAACCG---------ATTACTGATC-----CATTATTTGCTCT-------------------------------------------------TCTAATAGTACTTTGATCGCGCCAATCCCATGGAGCGCCACATCACCGAGATGAGTGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................AAAGATGGAGCGTGGATCCCT.....................................................................................................................................................................................................................2121.0020100100
.................GAAAAGATGGAGCGTGGATCCCT.....................................................................................................................................................................................................................2321.0020000200
.....................AGATGGAGCGTGGATCCCTGTCCTC...............................................................................................................................................................................................................2520.5010100000
.....................................................................................................................................................................................................................................GCGCCACATCACCGAGATGAGT..2220.5010000100
..........................................................................................................................................................................................................GTACTTTGATCGCGCCAATCCCATGG.........................2620.5010100000
.....................................................................................................................................................................................................TAATAGTACTTTGATCGCGCC...................................2120.5010000010
.......................................................................................................................................................................................................................................GCCACATCACCGAGATGAGT..2020.5010000010
.......................ATGGAGCGTGGATCCCTGTCCTCA..............................................................................................................................................................................................................2420.5010000100
....................AAGATGGAGCGTGGATCCCTGTCCTC...............................................................................................................................................................................................................2620.5011000000
...............................................................................................................................................................................................................................CATGGAGCGCCACATCACCGAGATGA....2620.5010001000
............GATTCGAAAAGATGGAGCGT.............................................................................................................................................................................................................................2020.5010000100
...................AAAGATGGAGCGTGGATCCCTGTCCT................................................................................................................................................................................................................2620.5010000100
.....................................................................................................................................................................................................................................GCGCCACATCACCGAGATGAGTGA2420.5011000000
............................................................................................................................................................................................................ACTTTGATCGCGCCAATCCC.............................2020.5011000000
...............................................................................................................................................................................................................................CATGGAGCGCCACATCACC...........1920.5010001000

Generated: 05/17/2015 at 03:41 AM