ID:

dvi_12217

 Coordinate:

scaffold_12963:16170154-16170304 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7 -9.3 -9.2

Flybase annnotation

exon [dvir_GLEANR_2249:8]; CDS [Dvir\GJ17674-cds]; intron [Dvir\GJ17674-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACACTCACACACACACACACTCACGTACTCACACACTCAGCTCATAGATACACACGCATCTAAATATATATACATATTCTATGGTGTAACCTAATCCTGGGACAACTGTCCCAACTATTCATCCAGGCAACGCACCTTAGACTCGAACTAGCTCGTAAACTCATTACCTTACTGCATAAAAGTACTTGATCTCGTTCACAGCCAAATTCATTGTGAGCTGCTCCTCGGGCGGTGGCACGCCCAGCATCACG
*********************************************************************************................((((((....))))))...................*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V116
male body		 SRR060688
160_ovaries_total
 SRR060675
140x9_ovaries_total
 V053
head
 SRR060681
Argx9_testes_total
 M028
head
 SRR060654
160x9_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 M061
embryo
 SRR060657
140_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
.........................................................................................................................................................................................................................CTGCTCCTCGGGCGGTGGCAC............. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAATTCATTGTGAGCTGCTC............................ 20 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TTGTGAGCTGCTCCTCGGGCG.................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................ATAGATACACACGCATCTA............................................................................................................................................................................................. 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................TGGTGTAACCTAATCCTGGGA..................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................TATATACATATTCTATGGTGT.................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTGAGCTGCTCCTCGGGCGG................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTATTCATCCAGGCAACG....................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTGAGCTGCTCCTCGGGCG.................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTGTGGGCTGCTCCTCGGG...................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGAACTAGCTCGTAAACTCA........................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTATGGTGTAACCTAGTCCTG........................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCGTAAACTCATTACCTTAC............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GCTTGATCTCGTTCACAGCCA............................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCTGCTCCTCGGGCGGTGGCAC............. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................ATGGTGTAACCTAATCCTGG....................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTTAGACTCGAACTAGCTCGT............................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CTGCATAAAAGTGCTTGATCT........................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAATTCATTGTGAGCTGCTCC........................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CAGGCAACGCACCTTAGACTC........................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGCTGCTCCTCGGGCGGT.................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................ACGTACTCACACACTCAGCTC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CTTGCTGCATAAAAGTACTTG............................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................ACGCACCTTAGACTCGAAC....................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTGTGAGCTGCTCCTCGGG...................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AACTAGCTCGTAAACTCATTACC................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GCTCATAGATACACACGCATC............................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GAGCTGCTCCTCGGGCGGTGGCACGC........... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCTGCTCCTCGGGCGGTGGC............... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTGTGAGCTGCTCCTCGGGCGT................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTAGACTCGAACTAGCTCGTA.............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GATTCATTGTGGGCTGCTCCT.......................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CTGTCCCAACTATTCATCCAG............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CAACGCACCTTAGACTCGAAC....................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGAGCTGCTCCTCGGGCGG................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CCCAACTATTCATCCAGGCAA......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTGAGCTGCTCCTCGGGCGT................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTCATCCAGGCAACGCACCTT................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CACACACACACTCACGTACTC............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCGAACTAGCTCGTAAACTCA........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCATTGTGAGCTGCTCCTC......................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................GTGTAGCCTAGTCCTGGGACA................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCTCGGGCGGTGGCACGCCCAGC...... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTGATCTCGTTCACAGCCAAA............................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ACTGGCTCGTAAGCTCATTAC.................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CGGTGGCACGCCCAGCATCGC. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGCACACGCGTCTAAATATATA..................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGCTCCTCGGGCGGTGGCACG............ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGGCAACGCACCTTGGACTCG.......................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCCAAATTCATTGTGAGCTG............................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGAGCTGCTCCTCGGGCGGT.................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TCAGCTCATAGATACACACGC.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTGATCTCGTTCACAGCCAA.............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCTGCTCCTCGGGCGGTGGC............... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CAGCTCATAGATGCACACGCG................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTGTGGGCTGCTACTCGG....................... 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CACAAACACACACACTCACGT................................................................................................................................................................................................................................. 21 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACGTGCACACACGCTCAGCTC................................................................................................................................................................................................................ 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................TATAAATACATTTTCTATGGT...................................................................................................................................................................... 21 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACACACACACTCAGCTCA............................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................TCTAAATATATGTACAGTTTC............................................................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................AATTCTGGGACTAGTGTC............................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTGAGTGTGTGTGTGTGTGAGTGCATGAGTGTGTGAGTCGAGTATCTATGTGTGCGTAGATTTATATATATGTATAAGATACCACATTGGATTAGGACCCTGTTGACAGGGTTGATAAGTAGGTCCGTTGCGTGGAATCTGAGCTTGATCGAGCATTTGAGTAATGGAATGACGTATTTTCATGAACTAGAGCAAGTGTCGGTTTAAGTAACACTCGACGAGGAGCCCGCCACCGTGCGGGTCGTAGTGC
***********************************************************************************************************************................((((((....))))))...................********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060655
9x160_testes_total
 SRR060681
Argx9_testes_total
 M027
male body		 M028
head
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060683
160_testes_total
 SRR060688
160_ovaries_total
 V053
head
 SRR060670
9_testes_total
 SRR060689
160x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060654
160x9_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
.............................................................................................................GGGTTGATAAGTAGGTCCGTT......................................................................................................................... 21 0 1 4.00 4 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CTAGAGCAAGTGTCGGTTTAA........................................... 21 0 1 3.00 3 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TCGAGCATTTGAGTAATGGAA................................................................................. 21 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GTTGGTAAGTAGGTCCGTTGC....................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGGATTAGGACCCTGTTGACA.............................................................................................................................................. 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGTTGCGTGGAATCTGAGCTT........................................................................................................ 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTGGATTAGGACCCTGTTGGC............................................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTTGAGTAATGGAATGACGTA.......................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GCGTGGAATCTGAGCTTGATC.................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCTGAGCTTGATCGAGCATTT............................................................................................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GTATCTATGTGTGCGTAGAT............................................................................................................................................................................................. 20 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTGTGCGTAGATTTATATAT..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTGTGAGTCGAGTATCTATGT....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GAGTAATGGAATGACGTATTT....................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGAGCTTGATCGAGCGTTTG........................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ACACTCGGCGAGGAGCCCGCC................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGTGCGTAGATTTATATATAT................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CGAGCATTTGAGTAGTGGAAT................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCCGTTGCGTGGGATCTGAG........................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CTAGAGCAAGTGTCGGTTTGG........................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGCAAGTGTCGGTTTAAGTAA....................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CCTGTTGGCAGGGTTGGTAAG................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCGGTTTAAGTAACACTCGAC............................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CATTGGGTTAGGACCCTGTTG................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGTAGGTCCGTTGCGTGGAGT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGTTGGCAGGGTTGGTAAGTA................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGCGTGGGATCTGAGCTTGA...................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCTGAGCTTGATTGATC................................................................................................ 18 2 4 1.00 4 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................GGCGAGGAGCCCGCCACCGTGC............ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ACCACATTGGGTTAGGACCCT..................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGAGTGCATGAGTGTGTG....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GAGGAGCCCGCCACCGTGCGG.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGAGTCGAGTATCTATGTGTGC................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGCGTGGGATCTGAGCTTGGT..................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTGTGAGTCGGGTGTCTATGT....................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GCGTGGAATCTGAGCTTGA...................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GTGAGTGTGTGAGTCGAGTAT............................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGGTAAGTAGGTCCGT.......................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGTTGCGTGGAATCTGAGCTTGGT..................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CCGTTGCGTGGAATCTGAGC.......................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGTAGGTCCGTTGCGTGGAAT................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................ATTTGAGTAATGGAATGACGT........................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GAACTAGAGCAAGTGTCGGTT.............................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TACGTAGGTCCGTTGCGGGGAA................................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AATCTGAGCTTGGTCGAGCAT.............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GACAGGGTTGATAAGTAGGTC............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AACTAGAGCAAGTGTCGGTTT............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CGAGCGTTTGAGTAATGGAA................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TATATGTATAAGATGCCACAT................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGTCGGTTTAAGTAACACTCGC................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATTGGGTTAGGACCCTGTTGA................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GACGAGGAGCCCGCCACCGT.............. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TAGAGCAAGTGTCGGTTTAAG.......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTGAGCTTGGTCGAGCGTTTG........................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................TTGGGTTAGGACCCTGTTGAC............................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TAAGTAGGTCCGTTGCGTGGAA................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GCATGAGTGTGTGAGTCGAGT............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AATGGAATGACGTATTTTCAT................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................AGTATCTATGTGTGCGTAGGT............................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGAGCTTGGTCGAGCGTTTGA.......................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTAGGTCCGTTGCGTGGGA................................................................................................................. 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTGTTGACAGGGTTGATAA.................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GGAGCAAGTGTCGGTTTAAGTA........................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GTATCTATGTGTGCGTAGGTT............................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................ACATTGGGTTAGGACCCTGTT.................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TACCACATTGGATTAGGACCC...................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................CTAGAGCAAGTGTCGGTTTAAC.......................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCTGAGCTTGATTGATCC............................................................................................... 19 3 19 0.53 10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 1 0 1 0
.........................................................................................................................................................................................GACTAGGGCAAGTGTCGGTT.............................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GCGTGAGTGTGTGAGTCGA................................................................................................................................................................................................................. 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GTGTGGGTCGAGTATCTATAT....................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGTGCGTAGGTTTATATATA.................................................................................................................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAAGTGTCGGTTTACGCAA....................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGTGCGTAGGTTTATATA...................................................................................................................................................................................... 19 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGCAAGTGTCGGTTTAAAC......................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACTCGACGAGGAGACCGCG................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GTTGGTGAGTAGGTCCGTT......................................................................................................................... 19 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGCTGATAAGAAGGTCCAT.......................................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATGACCTATTTTTATGAAG............................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
...............................................................................................................................................................................................AAAAAGTGTCGGTTTAAGT......................................... 19 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GTGAGTGTGTGTGTGTGTGAG..................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................GTTGCCTGGAATCGGAGCGT........................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TCACAGGGTTCAAAAGTAG................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:16170104-16170354 + dvi_12217 ACACTCACACAC----------ACACACAC--TCACGTACTC---ACACACTCAGCTCATAGATACAC--ACGCA--TCTAA-----------------ATATATATACATATTCT---------ATGGTGTAA-CCTAATCCTGGG-ACAACTGTCCCAACTATTCATCCAGGCAA---CGC-----------------------------ACCTTAGACTCG-AACTAGCTCGTAAACTCATTACCTTACTGCATAAAAGTACTT-GATCTCGTTCACAGCCAAATTCATTGTGAGCTGCTCCTCGGGCGG------------------------------------TG-GCACGCCCAGCATCACG--------
droMoj3 scaffold_6500:5632092-5632357 + A-ACAC----AC----------ACATACATGTACATGTAC-----AGATGCACAGCTCATAGATACTCAGACACAGCTCTACAGATTGTCTATATAGCATTATACATACATATAATAAGCATATGATCGTGTAATCCTAATCCCGGACAGAACTGTC-CAACTGT-CAGCCATGT-----CGC------------------------------------ACTCG-AACTAGTCCGTAAACTCATAA----ACTGCATAAAAGTACTT-GATCTCATTCACAGCCAAATTCATTGTGAGCTGCTCGTCA-------------------------------GG---CAGCGGCGGCACGCCCAGTATCCCA--------
droGri2 scaffold_15252:13597397-13597605 + ACACTCAAAAACAATAAATATTACACACAT--TAATGAACTCTTTAAGCACTCAG----------------------------------------------------------------------------------------------------------------------GCATCGTCACAAGCAAAACAAAAAGAACACCAACAGATCCCCTT---CTCGTAACTAGTCCGTAAACTCATTACCTTACTGCATAAAACGTACTTGATCTCATCCACAGCGAAATTCATCGTTAGCTGCTCCTCGGGCGGA-------------------------------------GTTACGCCGATTGCCACA--------
droWil2 scf2_1100000004585:4139730-4139834 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAATCTCATTACCTTACTGCATAAAAGTCCTTCAATCTCATCCACAGCTAAATTCATCA---TCAGCAAC---------AGCAGCAACTCCTCTG-------GAAT------AGTAGCAT----CATCATC--A--------
dp5 4_group3:7987736-7987878 + CAACAC----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAACCA-GA--AATCCTTAATCTCATTACCTTACTGCATAAAAGTCCTTCACTCTCATCCACAGCAAAATTCATCA---GCTGCTCATCGGGCGGAGGCGGCGGCGGAGGTG-------GAGG------CGGAGTCTCGTCCAGCAGTCTG--------
droPer2 scaffold_1:9437401-9437543 + CAACAC----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAACCA-GA--AATCCTTAATCTCATTACCTTACTGCATAAAAGTCCTTCACTCTCATCCACAGCAAAATTCATCA---GCTGCTCATCGGGCGGAGGCGGCGGCGGAGGTG-------GAGG------CGGAGTCTCGTCCAGCAGTCTG--------
droAna3 scaffold_12916:5876173-5876303 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAAATTCG-TA--AACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCACCTCATCCGGCGTAGG---------CG----------TAGGCGTCGGATTGGTCACGCCCCTCAGCTCG--------
droBip1 scf7180000396568:967258-967385 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAAATTCG-TA--AACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCACCTCATCCGGCGTAGG---------CG----------TAGG---TGGATTGGTCACGCCCATCAGCCAG--------
droKik1 scf7180000302570:640765-640879 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGCTTCCACCGGCGCAGCTGGTGCCCTGG-TGACCGGAGGAGG---CGGAGTG--------------------------
droFic1 scf7180000454144:587319-587438 + C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTCTCGTCCGGCGTATC---------GG----------TAGG---CGGCGTGGCCACGTCCATCGGCCTGGTG-----
droEle1 scf7180000491046:4044902-4045016 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCCGGCGGATC---------GG----------GAGG---CGGCGTGTCCACGCCCATCAGCCTG--------
droRho1 scf7180000777071:18296-18418 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCTGGTGGCTC---------AG----------GAGG---TAGCGTGTCCACGCCCATCGGCTTGGTAACAGG
droBia1 scf7180000302422:4697238-4697353 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAAATCATTG---GCGTCTCCTCCGGTGGCTC---------AG----------GAGG---TGGAGTGGCCACGCCCATCGGCCTGGTA-----
droTak1 scf7180000415357:96131-96253 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCCGGCGGAAC---------GG----------GAGG---CGGAGTGGCCACGCCCATCGGCCTGGTAGCAGG
droEug1 scf7180000409463:1290098-1290212 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCCGGCGGATC---------AG----------GAGG---AGGAGTGGTCACGCCCATCGGCCTG--------
dm3 chr2L:18960616-18960733 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCTGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTGGTA-----
droSim2 2l:18516800-18516919 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCTGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTGGTA-----
droSec2 scaffold_7:2589916-2590035 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCTGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTGGTA-----
droYak3 2R:5477851-5477965 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCAGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTG--------
droEre2 scaffold_4845:5308483-5308600 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCAGGTGGAAC---------AG----------GAGG---CGGAGGGGCCACGCCTATCGGCTTGGTG-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACACTCACACAC----------ACACACAC--TCACGTACTC---ACACACTCAGCTCATAGATACAC--ACGCA--TCTAA-----------------ATATATATACATATTCT---------ATGGTGTAA-CCTAATCCTGGG-ACAACTGTCCCAACTATTCATCCAGGCAA---CGC-----------------------------ACCTTAGACTCG-AACTAGCTCGTAAACTCATTACCTTACTGCATAAAAGTACTT-GATCTCGTTCACAGCCAAATTCATTGTGAGCTGCTCCTCGGGCGG------------------------------------TG-GCACGCCCAGCATCACG--------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................CTGCTCCTCGGGCGG------------------------------------TG-GCAC.....................2112.002000000000000000000000200000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AAATTCATTGTGAGCTGCTC.........................................................................2012.002000000000000000000000010000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTGTGAGCTGCTCCTCGGGCG.................................................................2112.002000000000000000000100000001000000000000000000000000000000000000
..........................................................ATAGATACAC--ACGCA--TCTA........................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000200000000000000000000000000000
..............................................................................................................................TGGTGTAA-CCTAATCCTGGG-A....................................................................................................................................................................................................................................2112.002000000000000000000000000001001000000000000000000000000000000000
......................................................................................................TATATACATATTCT---------ATGGTGT.....................................................................................................................................................................................................................................................2112.002000000000000000000000000001000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................TGTGAGCTGCTCCTCGGGCGG------------------------------------............................2112.002001000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................AACTATTCATCCAGGCAA---CG...................................................................................................................................................................................................2012.002000000000000000001000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGTGAGCTGCTCCTCGGGCG.................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CG-AACTAGCTCGTAAACTCA......................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................CTCGTAAACTCATTACCTTAC.............................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGGCGG------------------------------------TG-GCAC.....................2211.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................ATGGTGTAA-CCTAATCCTGG.......................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CTTAGACTCG-AACTAGCTCGT.............................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AAATTCATTGTGAGCTGCTCC........................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................CAGGCAA---CGC-----------------------------ACCTTAGACTC..........................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGCTGCTCCTCGGGCGG------------------------------------T...........................1811.001000000000010000000000000000000000000000000000000000000000000000
..................................ACGTACTC---ACACACTCAGCTC...............................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................A---CGC-----------------------------ACCTTAGACTCG-AAC.....................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ATTGTGAGCTGCTCCTCGGG...................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................AACTAGCTCGTAAACTCATTACC.................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
......................................................GCTCATAGATACAC--ACGCA--TC..........................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GAGCTGCTCCTCGGGCGG------------------------------------TG-GCACGC...................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTGTGAGCTGCTCCTCGGGCGT------------------------------------............................2211.001000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TTAGACTCG-AACTAGCTCGTA............................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................CTGTCCCAACTATTCATCCAG............................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................CAA---CGC-----------------------------ACCTTAGACTCG-AAC.....................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TGAGCTGCTCCTCGGGCGG------------------------------------............................1911.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................CCCAACTATTCATCCAGGCAA---.....................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGTGAGCTGCTCCTCGGGCGT------------------------------------............................2111.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................TTCATCCAGGCAA---CGC-----------------------------ACCTT................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.........CAC----------ACACACAC--TCACGTACTC---............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TCG-AACTAGCTCGTAAACTCA......................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TCATTGTGAGCTGCTCCTC......................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CCTCGGGCGG------------------------------------TG-GCACGCCCAGC..............2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TT-GATCTCGTTCACAGCCAAA..........................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TGCTCCTCGGGCGG------------------------------------TG-GCACG....................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCCAAATTCATTGTGAGCTG............................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GTGAGCTGCTCCTCGGGCGG------------------------------------T...........................2111.001000000000000000000000000001000000000000000000000000000000000000
...................................................TCAGCTCATAGATACAC--ACGC...............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TT-GATCTCGTTCACAGCCAA...........................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCTGCTCCTCGGGCGG------------------------------------TG-GC.......................2011.001000000000000000000000000000000000000001000000000000000000000000
droMoj3
A-ACAC----AC----------ACATACATGTACATGTAC-----AGATGCACAGCTCATAGATACTCAGACACAGCTCTACAGATTGTCTATATAGCATTATACATACATATAATAAGCATATGATCGTGTAATCCTAATCCCGGACAGAACTGTC-CAACTGT-CAGCCATGT-----CGC------------------------------------ACTCG-AACTAGTCCGTAAACTCATAA----ACTGCATAAAAGTACTT-GATCTCATTCACAGCCAAATTCATTGTGAGCTGCTCGTCA-------------------------------GG---CAGCGGCGGCACGCCCAGTATCCCA--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................ATTCATTGTGAGCTGCTCGTCA-------------------------------GG---C................................2511.001100000
droGri2
ACACTCAAAAACAATAAATATTACACACAT--TAATGAACTCTTTAAGCACTCAG----------------------------------------------------------------------------------------------------------------------GCATCGTCACAAGCAAAACAAAAAGAACACCAACAGATCCCCTT---CTCGTAACTAGTCCGTAAACTCATTACCTTACTGCATAAAACGTACTTGATCTCATCCACAGCGAAATTCATCGTTAGCTGCTCCTCGGGCGGA-------------------------------------GTTACGCCGATTGCCACA--------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................CATTACCTTACTGCATAAAACGTACTTG............................................................................................................2811.00110
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAATCTCATTACCTTACTGCATAAAAGTCCTTCAATCTCATCCACAGCTAAATTCATCA---TCAGCAAC---------AGCAGCAACTCCTCTG-------GAAT------AGTAGCAT----CATCATC--A--------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................AAC---------AGCAGCAACTCCTCTG-------GAAT------AGT...........................2611.00100010
..........................................................................................................................................................................................................................................................................................................................AGCAGCAACTCCTCTG-------GAAT------AGTAGC........................2611.00100100
dp5
CAACAC----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAACCA-GA--AATCCTTAATCTCATTACCTTACTGCATAAAAGTCCTTCACTCTCATCCACAGCAAAATTCATCA---GCTGCTCATCGGGCGGAGGCGGCGGCGGAGGTG-------GAGG------CGGAGTCTCGTCCAGCAGTCTG--------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................G------CGGAGTCTCGTCCAGCAGTC..........2111.0010100000000
............................................................................................................................................................................................................................................................................................................................CGGCGGCGGAGGTG-------GAGG------C.............................1930.3310100000000
..............................................................................................................................................................................................................................................................................................................................GCGGCGGAGGTG-------GAGG------CGG...........................1950.2010100000000
...............................................................................................................................................................................................................................................................................................................................CGGCGGAGGTG-------GAGG------CGG...........................1870.1410100000000
droPer2
CAACAC----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAACCA-GA--AATCCTTAATCTCATTACCTTACTGCATAAAAGTCCTTCACTCTCATCCACAGCAAAATTCATCA---GCTGCTCATCGGGCGGAGGCGGCGGCGGAGGTG-------GAGG------CGGAGTCTCGTCCAGCAGTCTG--------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................GCATAAAAGTCCTTCACTCTCA......................................................................................................2211.001010000
...........................................................................................................................................................................................................................................................................................................................GCGGCGGCGGAGGTG-------GAGG------C.............................2020.501000001
..............................................................................................................................................................................................................................................................................................................................GCGGCGGAGGTG-------GAGG------CG............................1850.201010000
droAna3
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAAATTCG-TA--AACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCACCTCATCCGGCGTAGG---------CG----------TAGGCGTCGGATTGGTCACGCCCCTCAGCTCG--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................CATCCGGCGTAGG---------CG----------TAGGCGTC................................2311.001100000
droBip1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAAATTCG-TA--AACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCACCTCATCCGGCGTAGG---------CG----------TAGG---TGGATTGGTCACGCCCATCAGCCAG--------SizeHit CountTotal NormTotal
No Reads
droKik1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGCTTCCACCGGCGCAGCTGGTGCCCTGG-TGACCGGAGGAGG---CGGAGTG--------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTCTCGTCCGGCGTATC---------GG----------TAGG---CGGCGTGGCCACGTCCATCGGCCTGGTG-----SizeHit CountTotal NormTotal
No Reads
droEle1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCCGGCGGATC---------GG----------GAGG---CGGCGTGTCCACGCCCATCAGCCTG--------SizeHit CountTotal NormTotal
No Reads
droRho1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCTGGTGGCTC---------AG----------GAGG---TAGCGTGTCCACGCCCATCGGCTTGGTAACAGGSizeHit CountTotal NormTotal
No Reads
droBia1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAAATCATTG---GCGTCTCCTCCGGTGGCTC---------AG----------GAGG---TGGAGTGGCCACGCCCATCGGCCTGGTA-----SizeHit CountTotal NormTotal
No Reads
droTak1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCCGGCGGAAC---------GG----------GAGG---CGGAGTGGCCACGCCCATCGGCCTGGTAGCAGGSizeHit CountTotal NormTotal
No Reads
droEug1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCCTCCGGCGGATC---------AG----------GAGG---AGGAGTGGTCACGCCCATCGGCCTG--------SizeHit CountTotal NormTotal
No Reads
dm3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCTGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTGGTA-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................AC---------AG----------GAGG---CGGAGTGGCCACGCCTA................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AAC---------AG----------GAGG---CGGAGTGGCCA......................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000
.............................................................................................................................................................................................................................................................................................................TTCATCTGGTGGAAC---------AG----------GAGG---CGGA.............................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................GCTCTCGTCCACAGCGAA...........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TGGTGGAAC---------AG----------GAGG---CGGAGT...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................AGCGAAATTCATCG---GCGTTTCA........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GGAAC---------AG----------GAGG---CGGAGTGGC........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................CATCG---GCGTTTCATCTGGTGGAAC---------AG----------........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CGTTTCATCTGGTGGAAC---------AG----------GAGG---C................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TGGAAC---------AG----------GAGG---CGGAGTGGCCACGC...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GAAC---------AG----------GAGG---CGGAGTGGC........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ATCTCATTACCTTACTGCATA.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CTTCGCTCTCGTCCACAGC..............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................C---------AG----------GAGG---CGGAGTGGCCACGCCTATC..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................ATCTGGTGGAAC---------AG----------GAGG---C................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CTGGTGGAAC---------AG----------GAGG---CGGAGT...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..................................................................................................................................................................................................................................................................................................................CTGGTGGAAC---------AG----------GAGG---CGGA.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................................................................................................................................................................................TTCATCG---GCGTTTCATCTGGT..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................C---------AG----------GAGG---CGGAGTGGCCACGCC..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AAAGTCCTTCGCTCTCGTCCACA................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCTGGTGGAAC---------AG----------GAGG---CGGAGTT..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AG----------GAGG---CGGAGTGGCCACGCCTATC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TGGTGGAAC---------AG----------GAGG---CGGAGTGGC........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................ATCG---GCGTTTCATCTGGTGGAAC---------....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TTCATCTGGTGGAAC---------AG----------GAGG---.................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GAAATTCATCG---GCGTTTC.........................................................................1811.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CATCTGGTGGAAC---------AG----------GAGG---C................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................................TGGTGGAAC---------AG----------GAGG---CGGAGTGGCCAC.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTCATCG---GCGTTTCATCTGGTGG................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCTGGTGGAAC---------AG----------GAGG---CGGAGTG..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CGAAATTCATCG---GCGTTTCATCTGGTG.................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GAAC---------AG----------GAGG---CGGAGTGGCC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................................GAAC---------AG----------GAGG---CGGAGTGGCCA......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
droSim2
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCTGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTGGTA-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................ATAAAAGTCCTTCGCTCTCGTCCACAG...............................................................................................2712.00200200000000000000
..........................................................................................................................................................................................................................................................................................................CGTTTCATCTGGTGGAAC---------AG----------GA......................................2211.00100010000000000000
droSec2
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCTGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTGGTA-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................TCG---GCGTTTCATCTGGTGG................................................................1911.0010010
.................................................................................................................................................................................................................................................................AAAAGTCCTTCGCTCTCGTCCA..................................................................................................2211.0011000
..................................................................................................................................................................................................................................................................AAAGTCCTTCGCTCTCGTCCACAG...............................................................................................2411.0010100
droYak3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCAGGTGGAAC---------AG----------GAGG---CGGAGTGGCCACGCCTATCGGCTTG--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................TCAGGTGGAAC---------AG----------GAGG---CGGAGTGGC........................2611.00100100000000
................................................................................................................................................................................................................................................................................................................ATCAGGTGGAAC---------AG----------GAGG---CGG..............................2111.00100100000000
.....................................................................................................................................................................................................................................................................................................................GTGGAAC---------AG----------GAGG---CGGAGT...........................1911.00100000010000
droEre2
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCGTAATCTCATTACCTTACTGCATAAAAGTCCTTCGCTCTCGTCCACAGCGAAATTCATCG---GCGTTTCATCAGGTGGAAC---------AG----------GAGG---CGGAGGGGCCACGCCTATCGGCTTGGTG-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 05:25 PM