ID:

dvi_12209

 Coordinate:

scaffold_12963:16166980-16167130 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.8 -12.8 -12.5

Flybase annnotation

CDS [Dvir\GJ17674-cds]; exon [dvir_GLEANR_2249:7]; intron [Dvir\GJ17674-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTTGCCGCCGGGTCTGCGCGAGAAGGCGAGCTCGTTGCGCAAAACTGGAGGTAAAGCATGAAATTTGTAAAATTCTTAATGTTGCAAAGCCAGAAATACGTTTAGTTTCTCGATTGTTGCTTTTGTTGCTCTCAATCTCTCTCGATCTAGAAAGTGAAAGTGAATTGAACGTAGACGTAGTCTAAAATACCCATCCACAGTAGAGTAACAGCAACAGCAACAACAACAACAACAGCAACAACATCAGCAGC
**********************************************************************************************..(((.((((.(((((.(((((......(((.......))).......))))).))))).)))).))).....************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060665
9_females_carcasses_total
 V047
embryo
 M061
embryo
 SRR060671
9x160_males_carcasses_total
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 M027
male body		 SRR060656
9x160_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR1106725
embryo_14-16h
 SRR060677
Argx9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
...................................................................................................................................................TAGAAAGTGAAAGTGAATTG.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GGGTCTGCGCGAGAAGGC................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GAAGGCGAGCTCGTTGCGC................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CCATCCACAGTGGAGTAACA......................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GATCTAGAAAGTGAAAGGGAATT..................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATACGTTTAGTTTCTCGATTGTTTC................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACAGTAGAGTAACAGCAACAGCAACAACA.......................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGATCTAGAAAGTGAAAGT.......................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAAAGTGCATTGAACGTAGAC........................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AATACGTTTAGTTTCTCGATTGTT..................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AATACCCATCCACAGTAGAGA............................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CCAGAAATGCGTTTGGTTTCT............................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGACGTAGTCTAAAATACC............................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GGCGAGCTCGTTGCGCAA................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGAGCTCGTTGCGCAAAACTGGA.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGAACGTAGACGTAGTCTAAAA................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TAGAAAGTGAAAGTGAATT..................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATCCACAGTAGAGTAACAGCAACAGCA................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GCGAGCTCGTTGCGCAAAACT............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GCTCGTTGCGCAAAACTGGAGGTA...................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............GCGCGAGAAGGCGAGCTCGTT....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTGTTGCTTTTGTTGCTCTCAA.................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................AAATACCCATCCACAGTAGA............................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................AGGTGAATTGAACGTAGACGT......................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............TCTGCGCGAGAAGGCGAGCTCG......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AATACCCATCCACAGTAGAGTA............................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CTTTTGTTGCTCTCAGTCTCT............................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTGCGCGAGAAGGCGAGCTC.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GTGAATTGAACGTAGACGT......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTGAAAGTGAGTTGAACG................................................................................ 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTGCGCGAGAAGGCGAGC............................................................................................................................................................................................................................ 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTTCGGGAGAAGGCGTGCT........................................................................................................................................................................................................................... 19 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTGGAGATAGAGCATGTAATT.......................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTTCGGGAGAAGGGGAGCT........................................................................................................................................................................................................................... 19 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CTTCGGGAGAAGGCGCGCT........................................................................................................................................................................................................................... 19 3 11 0.18 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................TATGTAAAGTTCTTAATGGTGC...................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGGGAAATTCTTAATGTTGCC..................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................TTCGTGAAATTCGTAATGTTG....................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................AGCAACAACAACAACAACAG................ 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ACTTAATTGAACGTAGACAT......................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AACAACAGCAACAACATCAGC... 21 0 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGTGACATCCTTAATGTTGC...................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................TGAGCAAAGCTGGAGGTAAC.................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................CTAGAAAGTGAAAGTC......................................................................................... 16 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................AACAGCAACAACAACAACAA................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................ATACCCATCCATCATAGA............................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTCGGGAGAAGGCGTGCT........................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGAAAACTCCTTAATGTTGC...................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................AACAGCAACAACATCAGCA.. 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CAACAACAGCAACAACAT....... 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACAGCAACAACAACAACAACAGCAACA........... 28 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCAACAACAACAACAACAGCAACA........... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCAACAACAACAACAACAGCAAC............ 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AACAACAACAACAGCAACAAC......... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................CAACAACAGCAACAACATCA..... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AACAACAACAACAACAGCAACAACA........ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CAACAACAGCAACAACATC...... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACAGCAACAACAACAACAACAGCA.............. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAACAGCAACAGCAACAAC........................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAACGGCGGCCCAGACGCGCTCTTCCGCTCGAGCAACGCGTTTTGACCTCCATTTCGTACTTTAAACATTTTAAGAATTACAACGTTTCGGTCTTTATGCAAATCAAAGAGCTAACAACGAAAACAACGAGAGTTAGAGAGAGCTAGATCTTTCACTTTCACTTAACTTGCATCTGCATCAGATTTTATGGGTAGGTGTCATCTCATTGTCGTTGTCGTTGTTGTTGTTGTTGTCGTTGTTGTAGTCGTCG
************************************************************************************..(((.((((.(((((.(((((......(((.......))).......))))).))))).)))).))).....********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 SRR060673
9_ovaries_total
 V053
head
 SRR060679
140x9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V116
male body		 SRR060659
Argentina_testes_total
 SRR060662
9x160_0-2h_embryos_total
.......................................................................................TCGGTCTTTATGCAAATCAAA............................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
..ACGGCGGCCCAGACGCGCTCTT................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TACAACGTTTCGGTCTTTATG........................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................AGCAACGCGTTTTGACCTCCAT...................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...CGGCGGCCCAGACGCGCTCT.................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GGTAGGTGTCGTCTCGTTGT......................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...CGGCGGCCCAGACGCGCTCTT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTTGTGGGTAGGTGTCATC................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAAAACAACGAGAGTTAGAGA............................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................CTGCGTCAGATTTTGTGGGTA......................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGAGCAACGCGTTTTGGCCTC......................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AGAGAGAGCTAGATCTTTCAC............................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTTTATGGGTAGATGTCGTC................................................ 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................CTCATTGTCGTTGTCGTTGTT............................ 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................CTGCATCAGAGACTATGG............................................................ 18 3 20 0.20 4 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................GGGTAGGTGTGATTTCAT............................................ 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TAAACATTTGAGGAATTGCAA........................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................TTGTTGTCGTTGTTGTAGTCG... 21 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................AACCTATCGGTCCTTATGC....................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAACATTTTAAAGATTACA......................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GATCTTGCACCTTTACTTA...................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................TGTTGTTGTTGTTGTCGTTGT........... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:16166930-16167180 + dvi_12209 TTTGCCGCCGGGTCTGCGCGAGAAGGCGA---GCTCGTTGCGCAAAACTGGAGGTAAAGCATGAA-ATTTG--T-AAAATTCT------------------TAA-T---G-TTGCAA------AGCCAGAAATACGTTTAGTTTCTCGATTGTTGCTTTTGT---------T-G--------CTCT----CAATCTCTCTCGATCTAGAAAGTG---------------AAAGT--------GAATTGAACGTAGACGT------AGTCTAAAATACCCATC-CACAGTAGAGTAACA---GCAACAGCAACAACAAC------------AACAACAGCAACAACAT-----CAGCAGC
droMoj3 scaffold_6500:5628622-5628886 + TTTGCCGCCCGGTCTGCGCGAAAAGGCGA---GCTCGTTGCGCAAAACTGGAGGTAAAGCATGAA-ATTT---GTAAAATTCT------------------T-ATT---G-TTGCCA------AGCCAGAAATACGTTTAGTTTCTCGATTGTTGCTTTTGT---------T-G--------CTCT----CAATCTCTCTCGATCTAGAAAGTG---------------AAAAT--------GAATTGAACGTAGACGT------AGTCTAAAATACCCATC-TACAGTAGAGTAACA---ACAGCTACAACAGCCACAGCAACAACAACAATCA---CAACAACTGCAGAGCAGCAGC
droGri2 scaffold_15252:13594565-13594830 + TTTGCCGCCGGGTCTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACTGGAGGTAAAGCATGAA-ATTT---TGAA---TTT------------------TAATAAT-G-TTGCAA------AGCCAGAAATACGTTTAGTTTCTCGATTGTTGCTTTTGT---------TTGTTG-----CTCT----CAATCT--CTCGATCTAGAAAGTG---------------AAAAT--------GAGTTGAACGTAGACGT------AGTCTAAAATACCCATCCCACATTAGAGTAACA---GCAACAGCAACAACAACAGCAACCAGAACTACAG---CAACAACAACA--AGAACAAC
droWil2 scf2_1100000004768:1967586-1967813 - TGGAGCTGTCGAA-TGCGCATCAAG-----------------CACCGCCCAAGACAGGATATCAGGATTCGT-TGAAGATTCCCGATGTGAAGCCAGGATTTGGTCATTTGCCGCAC----AATGT---------------------------------------------------------GCC----CAGTC-CGCTCGATGTGGCCCATA---------------AATATGG------ACCACCACCGACGGCGC---AGGACTCA--------CAAC-AAC--------AACAACAACAGCAACAACAACAGCAGCAACAACAGCAGCAG---CAACAACAACA--ACAGCAAC
dp5 4_group3:7985290-7985496 + CTTGCCACCCGGACTGCGCGAGAAGGCCACCAGTTCGTTGCGCAAAACCGGAGGTAAAGCATGAA-ATTCCTCC-A----CCT-----------------TTAATCGTTTTTTGCAA----AATGCCAGAAATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTGGTGATGAAGAAGAAGAAAGT--GGTGAAGATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------
droPer2 scaffold_1:9434951-9435157 + dpe_598 CTTGCCACCCGGACTGCGCGAGAAGGCCACCAGTTCGTTGCGCAAAACCGGAGGTAAAGCATGAA-ATTCCTCC-A----CCT-----------------TTAATCGTTTTTTGCAA----AATGCCAGAAATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTGGTGATGAAGAAGAAGAAAGT--GGTGAAGATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:5878360-5878536 - TTTGCCACCCGGACTGCGCGAGAAGGCGA---CCTCACTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---C-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCTCT--CAATCT--CTCGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------
droBip1 scf7180000396568:965034-965224 + TTTGCCACCCGGACTGCGCGAGAAGGCGA---CCTCACTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---C-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCTCT--CAATCT--CTCGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAAT------------------------------------------------------------------------------------
droKik1 scf7180000302570:635455-635659 + TTTGCCACCCGGACTGCGCGAGAAGGCCA---GCTCGCTGCGGAAAACCGGAGGTAAAGCATGAA-ATTC---C-A----CCT-----------------TTAATCGT-TTTTGCAAAAAAAATGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCTCTCTTGATCT----CGATGCAGAAAGTG------------CAGAAAGT-----GCAGATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droFic1 scf7180000454144:585102-585289 + TTTGCCACCCGGACTGCGCGAGAAGGCCA---TCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TATCC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT--CTTGACGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droEle1 scf7180000491046:4042445-4042631 + TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACC---GTTTGCAA-----ATGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droRho1 scf7180000780066:214299-214470 + TTTTAAATTGG-------------------------------CACAACTAAAA-----ATATG----TTT---T-T----CGT------------------TTATC---TTTTG-----------------------------------------------TTTCGTTTCATTTTTAATTTGCTACCGCTTATTGT----TGTTGCATGCATTG---------------AATAA-----T--CAAATGTACAAAAACATGCAC------GAAAACATG------------------CA---GTACCGACACTGCCGAC-------------ACCACAACAACAACAT-----GTACCGA
droBia1 scf7180000302422:4695039-4695223 + TTTGCCACCCGGACTGCGTGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CG-TGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droTak1 scf7180000415357:98296-98481 - CTTGCCACCCGGGCTGCGAGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droEug1 scf7180000409463:1292296-1292482 - TTTGCCACCCGGACTGCGCGAGAAGGCAA---CATCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAATC---GTTTGCAA-----ATGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
dm3 chr2L:18962749-18962934 - TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACT---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droSim2 2l:18518953-18519138 - TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAAAT---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droSec2 scaffold_7:2592076-2592261 - TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAAAT---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droYak3 2R:5479991-5480176 - TTTGCCACCCGGACTGCGTGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ACTC---T-A----CCT------------------TAACT---TTTTGCAA------TACCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------
droEre2 scaffold_4845:5306259-5306431 + TTTGCCACCCGGACTGCGTGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACT---TTTTGCAA------TGCCACA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTGCCGCCGGGTCTGCGCGAGAAGGCGA---GCTCGTTGCGCAAAACTGGAGGTAAAGCATGAA-ATTTG--T-AAAATTCT------------------TAA-T---G-TTGCAA------AGCCAGAAATACGTTTAGTTTCTCGATTGTTGCTTTTGT---------T-G--------CTCT----CAATCTCTCTCGATCTAGAAAGTG---------------AAAGT--------GAATTGAACGTAGACGT------AGTCTAAAATACCCATC-CACAGTAGAGTAACA---GCAACAGCAACAACAAC------------AACAACAGCAACAACAT-----CAGCAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................TAGAAAGTG---------------AAAGT--------GAATTG...............................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........GGGTCTGCGCGAGAAGGC............................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.....................GAAGGCGA---GCTCGTTGCGC............................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ACAGTAGAGTAACA---GCAACAGCAACAACA...........................................2911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CGATCTAGAAAGTG---------------AAAGT--------.....................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................AATACGTTTAGTTTCTCGATTGTT.............................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AATACCCATC-CACAGTAGAGA.................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AGACGT------AGTCTAAAATACC.................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................GGCGA---GCTCGTTGCGCAA..........................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................CGA---GCTCGTTGCGCAAAACTGGA...................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TGAACGTAGACGT------AGTCTAAAA.....................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TAGAAAGTG---------------AAAGT--------GAATT................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................ATC-CACAGTAGAGTAACA---GCAACAGCA.................................................2711.001000000000000000000000000000000000000000000000000000000000001000
.........................GCGA---GCTCGTTGCGCAAAACT......................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
................................GCTCGTTGCGCAAAACTGGAGGTA...............................................................................................................................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
...............GCGCGAGAAGGCGA---GCTCGTT................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................TTGTTGCTTTTGT---------T-G--------CTCT----CAA......................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AAATACCCATC-CACAGTAGA...................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
............TCTGCGCGAGAAGGCGA---GCTCG..................................................................................................................................................................................................................................................................................................................................2211.001000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AATACCCATC-CACAGTAGAGTA................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.............CTGCGCGAGAAGGCGA---GCTC...................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GT--------GAATTGAACGTAGACGT------..............................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............CTGCGCGAGAAGGCGA---GC.....................................................................................................................................................................................................................................................................................................................................1820.501001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................AGCAACAACAAC------------AACAACAG.....................20200.102002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAACAT-----CAGC...21130.081000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CTAGAAAGTG---------------AAAGT--------C....................................................................................................................16140.071000000000000000000000000000000000000000000000000000001000000000
...............................................................................................................................................................................................................................................................................................................AACAGCAACAACAAC------------AACAA........................20200.051000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAT-----CAGCA..19200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................C------------AACAACAGCAACAACAT-----.......18200.051000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AACAGCAACAACAAC------------AACAACAGCAACA................28200.051000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GCAACAACAAC------------AACAACAGCAACA................24200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GCAACAACAAC------------AACAACAGCAAC.................23200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AACAAC------------AACAACAGCAACAAC..............21200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................C------------AACAACAGCAACAACAT-----CA.....20200.051000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AACAACAAC------------AACAACAGCAACAACA.............25200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................C------------AACAACAGCAACAACAT-----C......19200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ACAGCAACAACAAC------------AACAACAGCA...................24200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TAACA---GCAACAGCAACAAC............................................19200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
TTTGCCGCCCGGTCTGCGCGAAAAGGCGA---GCTCGTTGCGCAAAACTGGAGGTAAAGCATGAA-ATTT---GTAAAATTCT------------------T-ATT---G-TTGCCA------AGCCAGAAATACGTTTAGTTTCTCGATTGTTGCTTTTGT---------T-G--------CTCT----CAATCTCTCTCGATCTAGAAAGTG---------------AAAAT--------GAATTGAACGTAGACGT------AGTCTAAAATACCCATC-TACAGTAGAGTAACA---ACAGCTACAACAGCCACAGCAACAACAACAATCA---CAACAACTGCAGAGCAGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................G-TTGCCA------AGCCAGAAATACGTTTAGT.........................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................A---CAACAACTGCAGAGCAGCA..2011.001100000
..........................CGA---GCTCGTTGCGCAAAACTGG....................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................................................................................TACAGTAGAGTAACA---ACAGCT....................................................2111.001000001
...................................CGTTGCGCAAAACTGGAG..................................................................................................................................................................................................................................................................................................................1811.001001000
...................................CGTTGCGCAAAACTGGAGGTA...............................................................................................................................................................................................................................................................................................................2111.001100000
....................................GTTGCGCAAAACTGGAGGTAAAGC...........................................................................................................................................................................................................................................................................................................2411.001001000
.............................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAATCA---C....................19100.101000010
droGri2
TTTGCCGCCGGGTCTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACTGGAGGTAAAGCATGAA-ATTT---TGAA---TTT------------------TAATAAT-G-TTGCAA------AGCCAGAAATACGTTTAGTTTCTCGATTGTTGCTTTTGT---------TTGTTG-----CTCT----CAATCT--CTCGATCTAGAAAGTG---------------AAAAT--------GAGTTGAACGTAGACGT------AGTCTAAAATACCCATCCCACATTAGAGTAACA---GCAACAGCAACAACAACAGCAACCAGAACTACAG---CAACAACAACA--AGAACAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........CGGGTCTGCGCGAGAAGGCGA---.......................................................................................................................................................................................................................................................................................................................................2111.00110
..............................................................................................................................................TTCTCGATTGTTGCTTTTGT---------TTGTTG-----C................................................................................................................................................................................2711.00110
.....................GAAGGCGA---GCTCGCTGCG.............................................................................................................................................................................................................................................................................................................................1811.00110
..............TGCGCGAGAAGGCGA---GCTCG..................................................................................................................................................................................................................................................................................................................................2011.00101
droWil2
TGGAGCTGTCGAA-TGCGCATCAAG-----------------CACCGCCCAAGACAGGATATCAGGATTCGT-TGAAGATTCCCGATGTGAAGCCAGGATTTGGTCATTTGCCGCAC----AATGT---------------------------------------------------------GCC----CAGTC-CGCTCGATGTGGCCCATA---------------AATATGG------ACCACCACCGACGGCGC---AGGACTCA--------CAAC-AAC--------AACAACAACAGCAACAACAACAGCAGCAACAACAGCAGCAG---CAACAACAACA--ACAGCAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................GATGTGAAGCCAGGATTTGGT..............................................................................................................................................................................................................................................................2114.00400310
....................................................GACAGGATATCAGGATTC.................................................................................................................................................................................................................................................................................................1811.00110000
................................................CCAAGACAGGATATCAGG.....................................................................................................................................................................................................................................................................................................1811.00100010
.....................................................................CGT-TGAAGATTCCCGATGTGAAGCCAGG.....................................................................................................................................................................................................................................................................2811.00101000
...................................................................................................................................................................................................................ATA---------------AATATGG------ACCACCACCGACGGC......................................................................................................2511.00100010
.................................................................................CCCGATGTGAAGCCAGGATTTGGT..............................................................................................................................................................................................................................................................2411.00100100
......................................................................................TGTGAAGCCAGGATTTGGTCATT..........................................................................................................................................................................................................................................................2311.00100010
.....................................................................................................................................................................................................................................................ACCACCGACGGCGC---AGGACT...........................................................................................2011.00100100
.........................................................................................................................AATGT---------------------------------------------------------GCC----CAGTC-CGCTCGATGTG........................................................................................................................................................2411.00101000
......................AAG-----------------CACCGCCCAAGACAGGATAT.........................................................................................................................................................................................................................................................................................................2311.00100010
.......................................................................................................................................................................................................................................TATGG------ACCACCACCGACGGCGC---AGGA.............................................................................................2611.00100010
..............................................................................................................GCCGCAC----AATGT---------------------------------------------------------GCC----CAGTC-CGCTCGAT...........................................................................................................................................................2811.00101000
.........................................................................................................................................................................................................................................................................................................AACAACAGCAACAACAACAGCAGCAACA..................................2880.13100010
.................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAACAACA...............................23200.10200020
........................................................................................................................................................................................................................................................................................................CAACAACAGCAACAACAACAGCAGCA.....................................26200.05100010
.........................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAACAGCAGCA.........................21200.05100010
.....................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAACAACAGC.............................21200.05100010
......................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAACAACAGCAGC..........................23200.05100010
............................................................................................................................................................................................................................................................................................................AACAGCAACAACAACAGCAGCAA....................................23200.05100100
.........................................................................................................................................................................................................................................................................................................................................CAGCAG---CAACAACAACA--ACAG....21200.05100001
..........................................................................................................................................................................................................................................................................................................................................AGCAG---CAACAACAACA--AC......18200.05100010
.........................................................................................................................................................................................................................................................................................................AACAACAGCAACAACAACAGCAGCA.....................................25200.05100010
.........................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAACAGCAGCAG---CA...................24200.05100010
dp5
CTTGCCACCCGGACTGCGCGAGAAGGCCACCAGTTCGTTGCGCAAAACCGGAGGTAAAGCATGAA-ATTCCTCC-A----CCT-----------------TTAATCGTTTTTTGCAA----AATGCCAGAAATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTGGTGATGAAGAAGAAGAAAGT--GGTGAAGATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........GGACTGCGCGAGAAGGCCAC.........................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................GAAGAAAGT--GGTGAAGATTTG...............................................................................................................2111.0010100000000
........................GGCCACCAGTTCGTTGCGC............................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................AGTTTTCCGATTGTTGCTTTTGT---------TCG--------CT...............................................................................................................................................................................2811.0010100000000
........CCGGACTGCGCGAGAAGGC............................................................................................................................................................................................................................................................................................................................................1911.0010010000000
..................................................................................................................................................................................................................AGTGGTGATGAAGAAGAAGAAAGT--GG.........................................................................................................................2611.0010100000000
.....................................................GTAAAGCATGAA-ATTCCTCC-............................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................GT--GGTGAAGATTTGAACGTAGACGTA...................................................................................................2611.0010100000000
........................................................................................................................................TTTAGTTTTCCGATTGTTGCT..........................................................................................................................................................................................................2111.0010100000000
.........................................GCAAAACCGGAGGTAAAGCATGA.......................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................GCAA----AATGCCAGAAATACGTTTAGT.........................................................................................................................................................................................................................2511.0010000100000
droPer2
CTTGCCACCCGGACTGCGCGAGAAGGCCACCAGTTCGTTGCGCAAAACCGGAGGTAAAGCATGAA-ATTCCTCC-A----CCT-----------------TTAATCGTTTTTTGCAA----AATGCCAGAAATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTGGTGATGAAGAAGAAGAAAGT--GGTGAAGATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....CACCCGGACTGCGCGAGAA...............................................................................................................................................................................................................................................................................................................................................1914.004400000
.........................................................................................................................................TTAGTTTTCCGATTGTTGCTTTTGT---------T...........................................................................................................................................................................................2613.003300000
............................................................................................................................................................................................................................................GGTGAAGATTTGAACGTAGACGT....................................................................................................2312.002000002
..............................................................................................................................................TTTCCGATTGTTGCTTTTGT---------............................................................................................................................................................................................2012.002200000
.TTGCCACCCGGACTGCGC....................................................................................................................................................................................................................................................................................................................................................1812.002200000
...............................................................................................................................................TTCCGATTGTTGCTTTTGT---------TCG--------CT...............................................................................................................................................................................2412.002110000
............................................................................................................................................GTTTTCCGATTGTTGCTTTTGT---------............................................................................................................................................................................................2212.002200000
...................................................................................................................................ATACGTTTAGTTTTCCGATTGT..............................................................................................................................................................................................................2212.002200000
...............................................................................................................................................TTCCGATTGTTGCTTTTGT---------TCG--------CTCT----C........................................................................................................................................................................2712.002200000
..................................................................ATTCCTCC-A----CCT-----------------TTAATCGT...........................................................................................................................................................................................................................................................2012.002200000
...............................................................................................................................................TTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CA.......................................................................................................................................................................2812.002200000
........................................................................................................................................................................................................................................GT--GGTGAAGATTTGAACGT..........................................................................................................1911.001001000
..................................TCGTTGCGCAAAACCGGAG..................................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................GGTGATGAAGAAGAAGAAAGT--...........................................................................................................................2111.001000001
...............................................................................................................................................TTCCGATTGTTGCTTTTGT---------TCG--------C................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................TGAAGAAGAAGAAAGT--GGTGAAGA...................................................................................................................2411.001000001
............................................................................................................................................................TTTTGT---------TCG--------CTCT----CAATCT----CGATG..........................................................................................................................................................2411.001001000
.............................................................................................................................................TTTTCCGATTGTTGCTTTT.......................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................CG--------CTCT----CAATCT----CGATGCAGAAA....................................................................................................................................................2311.001010000
...........................................................................................................................................................................................................................GAAGAAGAAGAAAGT--GGTGAAGATTT................................................................................................................2611.001000001
..............................................................................................................................................TTTCCGATTGTTGCTTTTGG---------............................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................GATGAAGAAGAAGAAAGT--GGTGAA.....................................................................................................................2411.001000001
droAna3
TTTGCCACCCGGACTGCGCGAGAAGGCGA---CCTCACTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---C-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCTCT--CAATCT--CTCGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................AACCGGAGGTAAAGCATGAA-ATTC---C-T----.......................................................................................................................................................................................................................................................................................2611.001010000
...GCCACCCGGACTGCGCGAGAAGGC............................................................................................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................TTTTGT---------TCG--------CTCTCT--CAATCT--CT...............................................................................................................................................................2311.001010000
.....CACCCGGACTGCGCGAGAA...............................................................................................................................................................................................................................................................................................................................................1911.001000010
.....................................................................................................................................................................................................................G---------------AAAGT--------GATTTGAACGTAGACGT....................................................................................................2311.001000010
droBip1
TTTGCCACCCGGACTGCGCGAGAAGGCGA---CCTCACTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---C-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCTCT--CAATCT--CTCGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAAT------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTTGCCACCCGGACTGCGCGAGAAGGCCA---GCTCGCTGCGGAAAACCGGAGGTAAAGCATGAA-ATTC---C-A----CCT-----------------TTAATCGT-TTTTGCAAAAAAAATGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCTCTCTTGATCT----CGATGCAGAAAGTG------------CAGAAAGT-----GCAGATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTGCCACCCGGACTGCGCGAGAAGGCCA---TCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TATCC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT--CTTGACGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACC---GTTTGCAA-----ATGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTTAAATTGG-------------------------------CACAACTAAAA-----ATATG----TTT---T-T----CGT------------------TTATC---TTTTG-----------------------------------------------TTTCGTTTCATTTTTAATTTGCTACCGCTTATTGT----TGTTGCATGCATTG---------------AATAA-----T--CAAATGTACAAAAACATGCAC------GAAAACATG------------------CA---GTACCGACACTGCCGAC-------------ACCACAACAACAACAT-----GTACCGASizeHit CountTotal NormTotal
No Reads
droBia1
TTTGCCACCCGGACTGCGTGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CG-TGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTTGCCACCCGGGCTGCGAGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACC---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTTGCCACCCGGACTGCGCGAGAAGGCAA---CATCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAATC---GTTTGCAA-----ATGCCAGA-ATACGTTTAGTTTTCCGATTGTTGCTTTTGT---------TCG--------CTCT----CAATCT----CGATGCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACT---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......ACCCGGACTGCGCGAGAAGGCGA---GCT....................................................................................................................................................................................................................................................................................................................................26118.001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000
..............TGCGCGAGAAGGCGA---GCTCGCTGCGC............................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
....................................................................................................................................................................................................................TG---------------AAAGT--------GATTTGAACGTAGAC......................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CACCCGGACTGCGCGAGAAGGCGA---GCT....................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TCCAGAAAGTG---------------AAAGT--------GATTTGAACG...........................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000100000
.......................................................................................................................................................................................................................................AGT--------GATTTGAACGTAGACGTAGACG...............................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TCCAGAAAGTG---------------AAAGT--------GATTTGAACGTA.........................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................CAAAACCGGAGGTAAAGCATGAA-AT...................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................GCAAAACCGGAGGTAAAGC...........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................GCGA---GCTCGCTGCGCAAAACCGGAG..................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................T----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GA...................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GATTTGAACGTAGACGTAGAC................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................TTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----.........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................T--------GATTTGAACGTAGACGTAGACGTA.............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................................................................................................TTCCGATTGTCGCTTTTGT---------TCG--------CTCT----.........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GAAAGTG---------------AAAGT--------GATTTGAACGT..........................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TTTGAACGTAGACGTAGACGTAGTCTAAA......................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TG---------------AAAGT--------GATTTGAACGTAGACGTAGA.................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTCCGATTGTCGCTTTTGT---------TCG--------C................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TAGTTTTCCGATTGTCGCTTT........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GAAAGTG---------------AAAGT--------GATTTGAACGTA.........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................ATCT----CAATCCAGAAAGTG---------------AAAG..............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACTGCGCGAGAAGGCGA---G......................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................GGCGA---GCTCGCTGCGCAAAACCGGAG..................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AAGT--------GATTTGAACGTAGACGTAGACG...............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGCAA------TGCCAGA-ATACGT..............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............CTGCGCGAGAAGGCGA---GCTCGC.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCCGATTGTCGCTTTTGT---------............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CACCCGGACTGCGCGAGAAGGCGA---GC.....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTGCCACCCGGACTGCGCGAGAAGG.............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTAGTTTTCCGATTGTCGCT..........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................TGTCGCTTTTGT---------TCG--------CTCT----.........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................TTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----.........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......ACCCGGACTGCGCGAGAAGGCGA---GC.....................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATTTGAACGTAGACGTAGAC................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................A-ATACGTTTAGTTTTCCGATTGTCGC...........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................ATACGTTTAGTTTTCCGATTGTCGCT..........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................T----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------.....................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................GT--------GATTTGAACGTAGACGTAGAATC..............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AAAGT--------GATTTGAACGTAGACGTAGA.................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................T---------TCG--------CTCT----CAATCT----CAATCCAGAAAGT..................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AGTG---------------AAAGT--------GATTTGAACGTAGACGTA...................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................T----CAATCCAGAAAGTG---------------AAAGT--------.....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..TGCCACCCGGACTGCGCGAGAAGGCGA---.......................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACTGCGCGAGAAGGCGA---GCTCG..................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GCGAGAAGGCGA---GCTCGCTGCGC............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTGCCACCCGGACTGCGCGAGAAGGCGA---.......................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAAAT---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................GATTTGAACGTAGACGTAGAC................................................................................................2114.00401300000000000000
....................................................................................................................................................................................................................................................TTTGAACGTAGACGTAGACGTAGTC..........................................................................................2513.00300000000000012000
....................................................................................................................................................................................................................TG---------------AAAGT--------GATTTGAACGTAGACGTAGA.................................................................................................2712.00200000000000011000
...........................................................................................................................................................................................................TCCAGAAAGTG---------------AAAGT--------GATTTGAACG...........................................................................................................2612.00200000020000000000
...........................................................................................................................................................................................................TCCAGAAAGTG---------------AAAGT--------GATTTGAACGT..........................................................................................................2712.00200000020000000000
.....................................................................................................................................................TTGTCGCTTTTGT---------TCG--------CTCT----.........................................................................................................................................................................2012.00200200000000000000
..TGCCACCCGGACTGCGCGAGAAGG.............................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
......................................................................................................................................................................................................................................................TGAACGTAGACGTAGACGTAG............................................................................................2111.00100000000000001000
..............................................................................................................................................TTTCCGATTGTCGCTTTTGT---------TCG--------CT...............................................................................................................................................................................2511.00101000000000000000
....................................................................................................................................................................................................................TG---------------AAAGT--------GATTTGAACGTAGACGTAGACG...............................................................................................2911.00100000001000000000
.............................................................................................................................................TTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----.........................................................................................................................................................................2811.00100000010000000000
.....................................................................................................................................................................................................................................................TTGAACGTAGACGTAGACGTAGTCTAA.......................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................................T--------GATTTGAACGTAGACGTAGACGTAGTC..........................................................................................2811.00100000000000010000
..................................................................................................................................................................................................................AGTG---------------AAAGT--------GATTTGAACGTAGACGTA...................................................................................................2711.00100000000000010000
.......................................................................................................................................GTTTAGTTTTCCGATTGTCGCT..........................................................................................................................................................................................................2211.00100100000000000000
....................................................................................................................................................................................................................................................TTTGAACGTAGACGTAGACGTAGTCTAAA......................................................................................2911.00100000001000000000
...................................................................................................................................................................................................................................................ATTTGAACGTAGACGTAGACGT..............................................................................................2211.00100100000000000000
...........................................................................................................................................................................................................TCCAGAAAGTG---------------AAAGT--------GATTTGAAC............................................................................................................2511.00100000010000000000
.......................................................................................................................................................GTCGCTTTTGT---------TCG--------CTCT----CAAT.....................................................................................................................................................................2211.00100010000000000000
...............................................................................................................................................TTCCGATTGTCGCTTTTGT---------TCG--------CTC..............................................................................................................................................................................2511.00101000000000000000
..............................................................................................................................................TTTCCGATTGTCGCTTTTGT---------TCG--------C................................................................................................................................................................................2411.00100100000000000000
.........................................................................................................................................................................................................................................T--------GATTTGAACGTAGACGTAGACGTAGT...........................................................................................2711.00100000010000000000
..TGCCACCCGGACTGCGCGA..................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..TGCCACCCGGACTGCGCGAGAAGGC............................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
..................................................................................................................................................................................................................AGTG---------------AAAGT--------GATTTGAACGTAGACGT....................................................................................................2611.00101000000000000000
...GCCACCCGGACTGCGCGAGA................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
..............................................................................................................................................TTTCCGATTGTCGCTTTTGT---------TCG--------CC...............................................................................................................................................................................2511.00100100000000000000
droSec2
TTTGCCACCCGGACTGCGCGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAAAT---GTTTGCAA------TGCCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................CCAGAAAGTG---------------AAAGT--------GATTTGAACGT..........................................................................................................2611.0010100
.....................................................................................................................................ACGTTTAGTTTTCCGATTGTCG............................................................................................................................................................................................................2211.0011000
.........................................................................................................................................................................................................................................................ACGTAGACGTAGACGTAGTC..........................................................................................2011.0010010
.....CACCCGGACTGCGCGAGAAGGC............................................................................................................................................................................................................................................................................................................................................2211.0010010
.........CGGACTGCGCGAGAAGGCGA---GCTC...................................................................................................................................................................................................................................................................................................................................2411.0010100
....................................GCTGCGCAAAACCGGAGC.................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................CAATCT----CAATCCAGAAAGTG---------------AAAGT--------G....................................................................................................................2611.0010010
droYak3
TTTGCCACCCGGACTGCGTGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ACTC---T-A----CCT------------------TAACT---TTTTGCAA------TACCAGA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAGACGTAGTCTAAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..TGCCACCCGGACTGCGTGAGAAGG.............................................................................................................................................................................................................................................................................................................................................2416.00600000000006
.................GTGAGAAGGCGA---GCTCGCTGCGCA...........................................................................................................................................................................................................................................................................................................................2412.00202000000000
...........................................................................................................................................AGTTTTCCGATTGTCGCTTTTGT---------TCG--------CT...............................................................................................................................................................................2811.00110000000000
.......CCCGGACTGCGTGAGAAGG.............................................................................................................................................................................................................................................................................................................................................1911.00110000000000
...........................................AAAACCGGAGGTAAAGCATGAA-ACT..................................................................................................................................................................................................................................................................................................2511.00100100000000
.............................................................................................................................................................TTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAA.....................................................................................................................................................2811.00100100000000
.....................................................................................................................................................................................................................................AAAGT--------GATTTGAACGTAGACGT....................................................................................................2211.00100000010000
......................................................................................................................................CGTTTAGTTTTCCGATTGTCG............................................................................................................................................................................................................2111.00100010000000
........................................................................................................................................................................................CT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------.....................................................................................................................2711.00100000010000
.....................................................................................................................................................................................................................G---------------AAAGT--------GATTTGAACGTAGACGT....................................................................................................2311.00101000000000
........................................................................................................................................................................................CT----CAATCT----CAATCCAGAAAGT..................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................AGT--------GATTTGAACGTAGACGTAGACGTA.............................................................................................2711.00100000010000
...................................CGCTGCGCAAAACCGGAGC.................................................................................................................................................................................................................................................................................................................1911.00110000000000
........................................................................................................................................................................................................................................GT--------GATTTGAACGTAGACGTAGACG...............................................................................................2411.00101000000000
.........................................GCAAAACCGGAGGTAAAGC...........................................................................................................................................................................................................................................................................................................1911.00100000010000
droEre2
TTTGCCACCCGGACTGCGTGAGAAGGCGA---GCTCGCTGCGCAAAACCGGAGGTAAAGCATGAA-ATTC---T-A----CCT------------------TAACT---TTTTGCAA------TGCCACA-ATACGTTTAGTTTTCCGATTGTCGCTTTTGT---------TCG--------CTCT----CAATCT----CAATCCAGAAAGTG---------------AAAGT--------GATTTGAACGTAGACGTAG--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................CT----CAATCCAGAAAGTG---------------AAAGT--------.....................................................................................................................2111.0010000100
...................GAGAAGGCGA---GCTCGCTGCGC............................................................................................................................................................................................................................................................................................................................2111.0011000000
............................................................................................................................................GTTTTCCGATTGTCGCTTTTGT---------TCG--------CT...............................................................................................................................................................................2711.0010000100
...........................GA---GCTCGCTGCGCAAAACCGGAGC.................................................................................................................................................................................................................................................................................................................2411.0011000000
............ACTGCGTGAGAAGGCGA---GCT....................................................................................................................................................................................................................................................................................................................................2011.0010000100
....................................................................................................................................TACGTTTAGTTTTCCGATTGTCGCT..........................................................................................................................................................................................................2511.0010000010

Generated: 05/16/2015 at 08:30 PM