ID:

dvi_12137

 Coordinate:

scaffold_12963:15938142-15938346 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.9 -40.8 -40.8

Flybase annnotation

CDS [Dvir\GJ17655-cds]; exon [dvir_GLEANR_2231:2]; intron [Dvir\GJ17655-in]; exon [dvir_GLEANR_2231:1]; CDS [Dvir\GJ17655-cds]; intron [Dvir\GJ17655-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#################---------------------------------
AGCATGAAAATGATTTGTTCGTTTCGGCAATGACCCCGAGCGAAGTGCATGTAAGTTCCGCTTCACCAAGCAATCATACTATTTTGATTTAATTAAGCATAATTTTGCGTCGCAAATGGGCGGCGTCCGTTTTGCCCGTTTATCTCTAACTTCCTCGACCGTTTGCTTTGTTTGACTTTTGTGACAACGTCACAAGCCTAGCTGACGCCCTACCGCACACGCCCTCGCTGCGCCAGTTTGAATCCATGCGATTAGGCGACGGACTTATCACAGTGCACATTCATTTATTATCTTTATCAATCTCG
**************************************************.........((((....))))(((((........))))).......(((......)))(((((((((((((((........)))))))))...................((((.(((..(((((.....(((....)))...)))))..))).))))......((((...((....))))))..............))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 V047
embryo
 SRR060679
140x9_testes_total
...................CGTTTCGGCAAAGACCCCGAG......................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................AATGACCCCGAGCGAAGTGCAT............................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................TCGTTTCGGCAATGACCCCGAGCGAA..................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................GTTCGTTTCGGCAATGACCCC............................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TTATCTCTAACTTCCTCGACCGTTTGC........................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................TTCGGCAATGACCCCGAGCGAAGTGC................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ATCTCTAACTTCCTCGACC................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................CGTTTCGGCAATGACCCCGAGC........................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........AATGATTTGTTCGTTTCGGCAA................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.....................TTTCGGCAATGACCCCGAGCGAAGTGC................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GCCCGTCTATCTCTGACT.......................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................AAGCCTAGCGGAGACCCTA............................................................................................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................ATGCGATGAGAGGACGGA.......................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................CCGTATGTTTTTTTTGACTTT.............................................................................................................................. 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGTACTTTTACTAAACAAGCAAAGCCGTTACTGGGGCTCGCTTCACGTACATTCAAGGCGAAGTGGTTCGTTAGTATGATAAAACTAAATTAATTCGTATTAAAACGCAGCGTTTACCCGCCGCAGGCAAAACGGGCAAATAGAGATTGAAGGAGCTGGCAAACGAAACAAACTGAAAACACTGTTGCAGTGTTCGGATCGACTGCGGGATGGCGTGTGCGGGAGCGACGCGGTCAAACTTAGGTACGCTAATCCGCTGCCTGAATAGTGTCACGTGTAAGTAAATAATAGAAATAGTTAGAGC
**************************************************.........((((....))))(((((........))))).......(((......)))(((((((((((((((........)))))))))...................((((.(((..(((((.....(((....)))...)))))..))).))))......((((...((....))))))..............))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 M027
male body		 M047
female body
 V053
head
 SRR060655
9x160_testes_total
 V116
male body		 SRR060689
160x9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR1106729
mixed whole adult body
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060662
9x160_0-2h_embryos_total
...........................................................................................................................................................................................................CGGTGGGATGGCGTGTGCGGGA................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CCGCAGGCAAAACGGGCAAATA.................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GGAACGCTAATCCGCTGGC........................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GAGCTTGAAGGTGCTGGAA............................................................................................................................................... 19 3 5 0.60 3 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTACACGGTCTAACTTAGGTA.......................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCAGCCGTGTGCGGGAGCGA............................................................................ 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................TTCAGGGCCAAGTGGTTC........................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AGCTTGAAGGTGCTGGAA............................................................................................................................................... 18 3 20 0.30 6 0 0 0 1 3 0 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................GAGCTGCCAAACGAAACCGAC................................................................................................................................... 21 3 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
................................TGGGGCACGCTGAACGTACA............................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................TTTCAGGGCCAAGTGGTTC........................................................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................CTGGCCAACGAACCAAACTC................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................CGGGCAAGAAGAGATTG........................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................GGAGCTGGCAAGCGAATCT...................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................ATTCAGGGCCAAGCGGTTC........................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................CCGCCGCAGGCTGAAAGGG........................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TAGTGGCACGTGTAGGTGA.................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
TCGTACTTTCACGAAACTAG............................................................................................................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TTTCAAGGCCAAGCGGTTC........................................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................GCAGTGTTCGCATGGCCT.................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................GCGCTTCACGCACAGTCAA........................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.CGTAATGTTACTAAACAA.............................................................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:15938092-15938396 + dvi_12137 A---GCATGAAAA---------TGATTTGTTCGTTTCGGCAATGACCCCGAGC---------GAAGTGCATGTAAGTTCCGCTTCACCAAGCAATC--------------------A---TAC-T-------------------AT-T-T--TGATTTAATTAAGCATAATT-TT--GCGTCGCAAAT-GGGCGGCGTCCGTT--------TTGCCCGT-TTATCTC-TA---ACTTCCTC---------------GAC-----CGTTTGCTTTGTTTGACTTT---------------T---G-TGACAACGTCACA-AG-CCTAGC---TGACGCCCTAC-----CGCACACGCCCTCGCTGCGCCAGTTTGAATCCATGCGATTAGGC-GACG-----GAC-----TTATCACAGT-------------------------GCACAT----TCATTTATTA-------------------------T-------CTTTAT------CAATCT------CG
droMoj3 scaffold_6500:5382358-5382644 + AGC---AAGAAAA---------TGATTTATTCGTATCAGCAATGACGCCGAGC---------GAAGTGCATGTAAGCAAGCA--------GCGAAC---------------------AAATAT-T-------------------GT-A-T--TTATTCAATTAAGCATAAATTTGATGGGTCGCAAGTGGGGCGGCGTCCGAG------------CTGTTTTATCTTCTGCTTA------CAA----------------TGCT-CGCGTGCTTTGTTTGA-TT----------------T---G-TGACAACGTCACAGAG-TCTCGC---TGACGCCCCTCTAGCC------------------------------------GATTAGGAAGACGACTGCGAC-----TTATCGCAGTGCAGTTCATCTCTAGT-GTAAGCTAA--T--TA---------------------T-----------------------ATATATA------TATAT------AT
droGri2 scaffold_15252:13366672-13366969 + AGC---ATGAAAA---------TGATTTATTCGTATCCGCAATGACGCCCAGT---------GAGGTGCATGTAAGTTACAC--------------------------------------------------------ATTTATTT-CAA--TTATTAAATTAACTTGAATT-AT--GCGTCGCAAAT-GGGCGGCGTCTGTC----CT------------------------TTATTATTAGCTTTAT---CTTTGTGTTTTACTGTTGCTTTGTGTGT-GTG---------------T---G-TGTCAACGTCACA-ATGCTTTGCGAGGGGCGGCAACA-----ACA---AATTTTTGTTGAT---TAGA------------------------------CTTATTTTATCGCAT---------------CTGCATTGCTTA--T--AATATGTATAA---TTATGCTTGTACATT--------TT-----ACAT------TT----TT---GTTGATAT
droWil2 scf2_1100000004585:8337110-8337347 - ATGA---AAATAA---------TGATTTATTCGTATCGGCCATAAGTCCGGGTGACGT------TACACACGTAAGTTCAAA---------CAAGCA------------------CACAAAAG-GATGCGTTGGCAGCATTTGCAT-T-T--ACACGCAATTCATACTAATC-GTACG-----------G---GT---CGGG---------------------------------------------------------CGTTGCTCTGGCTTTGTGTGG-CCTCAGCCGCCCCCCTTTT---C-ATGCTACGCCGCT-GC----------TAC-ACTCCCC-----CTC---AAAGCTTATCAGC---G------------------------------------------------T-------------------------TCCAAT----TGAATTT-------------------------------------------------AAACT------CT
dp5 4_group3:921274-921541 + A---GAACGAAAA---------TGATTTATTCGTATCAGCCATGAGTCCCAGTAGCATCGGGGATGTGCATGTAAGTCAAAT---------CAGA-------------GCGTACGCCCAACAG-G-------------------AT-G-C--CTATTAAATTAGGTTTAATTTTT--G-----------GGGCGGCG---CTC--TCCATTTTGC----------------TTGCTTTATCAA--------CCAGAGACTGTTGC-TGTGCTTTGTTTGG-CGT---------------------TGACAACGTCATT-AG----------AGCCGCCCACC-----AGCACACAGCCATGTTGTT---GTTT---------------------------------------------------------------GTGTGCTTA--T--CA---------------------TCAATTGAAT-------------CGTCTCTT------TCTCT------CT
droPer2 scaffold_1:2401085-2401352 + A---GAACGAAAA---------TGATTTATTCGTATCAGCCATGAGTCCCAGTAGCATCGGGGATGTGCATGTAAGTCAAAT---------CAGA-------------GCGTACGCCCAACAG-G-------------------AT-G-C--CTATTAAATTAGGTTTAATTTTT--G-----------GGGCGGCG---CTC--TCCATTTTGC----------------TTGCTTTATCAA--------CCAGAGACTGTTGC-TGTGCTTTGTTTGG-CGT---------------------TGACAACGTCATT-AG----------AGCCGCCCACC-----AGCACACAGCCATGTTGTT---GTTT---------------------------------------------------------------GTGTGCTTA--T--CA---------------------TCAATTGAAT-------------CGTCTCTT------TCTCT------CT
droAna3 scaffold_12943:2511380-2511628 - G---AAACGACAC---------CGATCTTTTCGTGTCGGCCATGAGCCCCAGCAGCATTGA------ACATGTAAGTGCGGG---------CCA---------------------CCCAGCAG-GAC------------------G-T-A--AACTTAAATTGGCTCAAATT-TT--G-----------AGGCGG---CGCCTGCTTCA-----TCTGT------------TCTCTTTATTAT------CAATAACGACTGTTGCTTTTGCTTTGTTTGG-AT----------------------CGTCGACGTCATA-AG----------TGCCGCCCAC------------------TGTTGCT---CA--------------------------------------------CAGT-----------------GGA----G-TGTAG----TGAG------CAATGTG--TACATT------CTGT-----GTTC------AT----TA---------GC
droBip1 scf7180000396728:819537-819790 + G---GAACGACAC---------CGATCTTTTCGTGTCGGCCATGAGCCCCAGCAGTATGGA------ACATGTAAGTGCGAG---------CCA---------------------CCCATCAG-GAT------------------T-T-AC-CCA-TCAATTGGCTCAAATT-TC--G-----------AGGCGG---CGCTCGCTTCA-----TCTGT------------TTTCTTTATTAT------CACTAACGACTGTTGCTTTTGCTTTGTTTGG-AT----------------------CGGCGACGTCATG-AG----------TGCCGCCCAC------------------TGTTGCT---CA--------------------------------------------CAGT-----------------GGA----G-AGTAC----TGAA------CAATGCG--TATACT------CTGG-----GTTC------AT----TA---GCTGC-TA
droKik1 scf7180000302472:1790445-1790721 - G---CAATGAGAGCAGCGATCGGGATCTGTTCGTCTCAGCTTTGAGCCCCAGCAGCATCGGAGATGTGCACGTAAGTAGCAC------------GGTTGGCTGGATGAGCTCAATCACAACAG-G-------------------AT-G-C--TTATTCAATTAGCTCTAATT-TC--G-----------GGGCGG---CTCTCGC----------------------------TCTTTATCAGCTGCCG---CGACGACTGTTGCTTTCGCTTTGTTTGG-CTT---------------TCGGG-CGGCGACGTCACG-AG----------TGCCGCCCCCCAAGCCAGCAGAGAACCTTGTTGCT---CA------------------------------------------------------------------------------------------------------TCCATTTAAGCT--CT-----ACTC------TC----TC---------TC
droFic1 scf7180000453924:1434149-1434397 + ATCGGAATGAAAG---------CGACCTATTTGTGTCGGCTCTGAGTCCCTCCAGCATCGGGGATATACATGTAAGTCGCAG---------CAACT--------------------ACAACC-GGA--AGCCACCCAGATCGGCAG-C-A--CCCTTAAATTGCCTCCAATT-GC--G-----------GGGCGT---CGGTC------------------------------GTTTTATCAG---------------------CGCTCGCTTTGTTTGG-CTT---------------T---G-TGACTACGTCACG-AG----------TGCCGCCCACC-----AGA---AAAGCTTGTTGCA---TGCT----------------------------------------------------------------------AA--T--AA-----AT-----------------ATTTATT--------T---GCCTTCTC------CACTCC------CA
droEle1 scf7180000490728:110812-110993 + ACAGGAATGAAAG---------TGATCTATTTGTGTCGGCACTAAGTCCCAGCAGTATCGGAGATATACACGTAAGTCGGGG---------GAATATACAG-------GCT-----ATATCC-GCA--TGCAACCTACATTCGGAG-C-C--CTATTTAATTAGCTCCAATT-TC--G-----------GGGCGT---CGCTC------------------------------GCTTTATCAA---------------------CATTCGCTTTGTTTGGGCTT---------------T---G-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779523:121016-121271 + ACCGGAACGAAAG---------TGATCTATTTGTGTCGGCATTGAGTCCCAGCAGCATGGGAGATATACACGTAAGTCGGGG---------AAGCATAGCC----------------------GGA--TACAGCCCGCACAAAGAG-C-C--CTACTTAAATAGCTACGATT-TC--G-----------GGGCGT---CGCTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-CTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---ACAGCTTGTTGCT---TTAT---------------------------------------------------------------ATA----T------------------------------CCATTTCATTG--CTGCTTCTTCCTCTCT------CAATCC------CC
droBia1 scf7180000301468:1061849-1062120 - ACCGCAACGAAAG---------TGATCTTTTTGTGTCCGCCCTGAGTCCCAGCAGCATCGGCGATGTCCACGTAAGTGGGGT---------CAGTGGACCC-------------ACCTACCCGGGG--AGCAGCCCGCATTCAGAG-C-TCTCTATTGAATTAGCTCCAATT-TC--G-----------GGGCGT---CGGTC------------------------------GCTTTATCAG---------------------CGTACGCTTTGTTTGG-CTT---------------T---G-CAACTACGTCACG-AG----------TGCCGCCCACC-----AGC---GAAGCTTGTTGCT---CCGT---------------------------------------------------------------AGA----ATTAGA--AAATGTATATGTA-------------------------TCTAATGCC------ACTTCCGTTCC------CA
droTak1 scf7180000415914:647329-647575 - ACCGAAATGAAAG---------TGATTTATTTGTTTCGGCTTTGAGTCCCAGCAGCATCGGCGATATCCATGTAAGTAGCGC---------CGATAAACCC----------------------G-G--AATAACCCGCATCCGGAGGT-TCTATACTAAATTAGTTCCAATT-TC--G-----------GGGCGT---CGGTC------------------------------GCTTTATCAG---------------------CGTTCGCTTTGTTTGG-CTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCCT---------------------------------------------------------------GGA----AATATAT------------------------CCC-------------------CTTTTCT------CTAATT------TA
droEug1 scf7180000409554:2638974-2639225 - ATCGGAATGAAAG---------TGATCTATTTGTGTCGGCACTGAGCCCCAGCAGTATTGGGGATATCCACGTAAGTGAGGG---------CAATAAACCC----------------------GTG--AGCAGCCCGCATCAGGAG-G-T--CTATTAAATTAGCTTCCATT-TC--G-----------GGGCGT---CGGTT------------------------------GCTTTATCAG---------------------AGTTTGCTTTGTTTGG-TTT---------------T---GATGACTACGTCACG-AG----------AGCCGCCCACC-----AGC---AAAGCTTGTTGCT---TCAT---------------------------------------------------------------AGA----AA---------TGAGTTTGAG-------------------------TATGAG---TTTTT------TACACC------CT
dm3 chr2L:3449916-3450171 + ATCGCAACGAAAG---------TGATCTCTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTTGGGG---------CACGAAACAC----------------------GGG--AGCAGCCCGCATCGACAG-C-CC-CCAGTAATTGAGCTCCCGTT-TT--G-----------GGGCGTCGTCGGTC------------------------------GTTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------AGA----AACACAA----TGAATTTGCG-------------------------TCTTAATGC------ATT-------C------CC
droSim2 2l:3309602-3309857 + ATCGCAACGAAAG---------TGATCTTTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTTGGGT---------CACGAATCGC----------------------GGG--AGCAGCCCGCATCGGCAG-C-CC-CCAGTAATTGAGCTCCCATT-TC--G-----------GGGCGTCGTCGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACA-TG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------AGA----AACACAA----TGAATTTGCG-------------------------TCTTAATGC------ACTC-------------CC
droSec2 scaffold_129:12034-12289 + ATCGCAACGAAAG---------TGATCTTTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTTGGGT---------CACGAAACGC----------------------GGG--AGCAGCCCGCATCGGCAG-C-CC-CCAGTAATTGAGCTCCCATT-TC--G-----------GGGCGTCGTCGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACA-TG----------TGCCGCCCACC-----AGA---AAATCTTGTTGCT---CCAT---------------------------------------------------------------AGA----AACACAA----TGAATTTGCG-------------------------TCTTAATGC------ACTC-------------CC
droYak3 2L:3437721-3437979 + ATCGGAACGAGAG---------TGATCTTTTCGTGTCGGCCCTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTGGGGG---------CAAAAAACGC----------------------TGA--TGCAGCCCGCATCGGTAG-C-C--CCAGTAATTGAGCTCCTATT-TC--G-----------GGGCGTCGTCGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------A---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------AGG----GACACAT----AGAATTCGCG-------------------------TCTTATTGC------ACTCCCAAT---------C
droEre2 scaffold_4929:3482293-3482548 + ATCGGAACGAAAG---------TGATCTTTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTGGGGG---------CAAGCATCGC----------------------GGG--AGCAGCCCGCATCGGTAG-C-C--CCAGTAATTGAGCTCCCATT-TC--G-----------GGGCGT---CGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------TGG----GACACAT----TGAATTTGCG-------------------------TCTTATTGC------ACTCCCAAT---------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
A---GCATGAAAA---------TGATTTGTTCGTTTCGGCAATGACCCCGAGC---------GAAGTGCATGTAAGTTCCGCTTCACCAAGCAATC--------------------A---TAC-T-------------------AT-T-T--TGATTTAATTAAGCATAATT-TT--GCGTCGCAAAT-GGGCGGCGTCCGTT--------TTGCCCGT-TTATCTC-TA---ACTTCCTC---------------GAC-----CGTTTGCTTTGTTTGACTTT---------------T---G-TGACAACGTCACA-AG-CCTAGC---TGACGCCCTAC-----CGCACACGCCCTCGCTGCGCCAGTTTGAATCCATGCGATTAGGC-GACG-----GAC-----TTATCACAGT-------------------------GCACAT----TCATTTATTA-------------------------T-------CTTTAT------CAATCT------CGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................AATGACCCCGAGC---------GAAGTGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..............................TCGTTTCGGCAATGACCCCGAGC---------GAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
............................GTTCGTTTCGGCAATGACCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TTATCTC-TA---ACTTCCTC---------------GAC-----CGTTTGC............................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
..................................TTCGGCAATGACCCCGAGC---------GAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................ATCTC-TA---ACTTCCTC---------------GAC-----C..................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
...............................CGTTTCGGCAATGACCCCGAGC---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
...........AA---------TGATTTGTTCGTTTCGGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.................................TTTCGGCAATGACCCCGAGC---------GAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
AGC---AAGAAAA---------TGATTTATTCGTATCAGCAATGACGCCGAGC---------GAAGTGCATGTAAGCAAGCA--------GCGAAC---------------------AAATAT-T-------------------GT-A-T--TTATTCAATTAAGCATAAATTTGATGGGTCGCAAGTGGGGCGGCGTCCGAG------------CTGTTTTATCTTCTGCTTA------CAA----------------TGCT-CGCGTGCTTTGTTTGA-TT----------------T---G-TGACAACGTCACAGAG-TCTCGC---TGACGCCCCTCTAGCC------------------------------------GATTAGGAAGACGACTGCGAC-----TTATCGCAGTGCAGTTCATCTCTAGT-GTAAGCTAA--T--TA---------------------T-----------------------ATATATA------TATAT------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................CAGCAATGACGCCGAGC---------GAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................AATGACGCCGAGC---------GAAGTGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................CAACGTCACAGAG-TCTCGC---................................................................................................................................................................................................1911.001100000
....................................CAGCAATGACGCCGAGC---------GAAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
AGC---ATGAAAA---------TGATTTATTCGTATCCGCAATGACGCCCAGT---------GAGGTGCATGTAAGTTACAC--------------------------------------------------------ATTTATTT-CAA--TTATTAAATTAACTTGAATT-AT--GCGTCGCAAAT-GGGCGGCGTCTGTC----CT------------------------TTATTATTAGCTTTAT---CTTTGTGTTTTACTGTTGCTTTGTGTGT-GTG---------------T---G-TGTCAACGTCACA-ATGCTTTGCGAGGGGCGGCAACA-----ACA---AATTTTTGTTGAT---TAGA------------------------------CTTATTTTATCGCAT---------------CTGCATTGCTTA--T--AATATGTATAA---TTATGCTTGTACATT--------TT-----ACAT------TT----TT---GTTGATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATGA---AAATAA---------TGATTTATTCGTATCGGCCATAAGTCCGGGTGACGT------TACACACGTAAGTTCAAA---------CAAGCA------------------CACAAAAG-GATGCGTTGGCAGCATTTGCAT-T-T--ACACGCAATTCATACTAATC-GTACG-----------G---GT---CGGG---------------------------------------------------------CGTTGCTCTGGCTTTGTGTGG-CCTCAGCCGCCCCCCTTTT---C-ATGCTACGCCGCT-GC----------TAC-ACTCCCC-----CTC---AAAGCTTATCAGC---G------------------------------------------------T-------------------------TCCAAT----TGAATTT-------------------------------------------------AAACT------CTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................ATAAGTCCGGGTGACGT------TACACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
dp5
A---GAACGAAAA---------TGATTTATTCGTATCAGCCATGAGTCCCAGTAGCATCGGGGATGTGCATGTAAGTCAAAT---------CAGA-------------GCGTACGCCCAACAG-G-------------------AT-G-C--CTATTAAATTAGGTTTAATTTTT--G-----------GGGCGGCG---CTC--TCCATTTTGC----------------TTGCTTTATCAA--------CCAGAGACTGTTGC-TGTGCTTTGTTTGG-CGT---------------------TGACAACGTCATT-AG----------AGCCGCCCACC-----AGCACACAGCCATGTTGTT---GTTT---------------------------------------------------------------GTGTGCTTA--T--CA---------------------TCAATTGAAT-------------CGTCTCTT------TCTCT------CTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................GTAAGTCAAAT---------CAGA-------------GCGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................GTACGCCCAACAG-G-------------------AT-G-C--CT.................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
droPer2
A---GAACGAAAA---------TGATTTATTCGTATCAGCCATGAGTCCCAGTAGCATCGGGGATGTGCATGTAAGTCAAAT---------CAGA-------------GCGTACGCCCAACAG-G-------------------AT-G-C--CTATTAAATTAGGTTTAATTTTT--G-----------GGGCGGCG---CTC--TCCATTTTGC----------------TTGCTTTATCAA--------CCAGAGACTGTTGC-TGTGCTTTGTTTGG-CGT---------------------TGACAACGTCATT-AG----------AGCCGCCCACC-----AGCACACAGCCATGTTGTT---GTTT---------------------------------------------------------------GTGTGCTTA--T--CA---------------------TCAATTGAAT-------------CGTCTCTT------TCTCT------CTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
G---AAACGACAC---------CGATCTTTTCGTGTCGGCCATGAGCCCCAGCAGCATTGA------ACATGTAAGTGCGGG---------CCA---------------------CCCAGCAG-GAC------------------G-T-A--AACTTAAATTGGCTCAAATT-TT--G-----------AGGCGG---CGCCTGCTTCA-----TCTGT------------TCTCTTTATTAT------CAATAACGACTGTTGCTTTTGCTTTGTTTGG-AT----------------------CGTCGACGTCATA-AG----------TGCCGCCCAC------------------TGTTGCT---CA--------------------------------------------CAGT-----------------GGA----G-TGTAG----TGAG------CAATGTG--TACATT------CTGT-----GTTC------AT----TA---------GCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................GTCGGCCATGAGCCCCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
G---GAACGACAC---------CGATCTTTTCGTGTCGGCCATGAGCCCCAGCAGTATGGA------ACATGTAAGTGCGAG---------CCA---------------------CCCATCAG-GAT------------------T-T-AC-CCA-TCAATTGGCTCAAATT-TC--G-----------AGGCGG---CGCTCGCTTCA-----TCTGT------------TTTCTTTATTAT------CACTAACGACTGTTGCTTTTGCTTTGTTTGG-AT----------------------CGGCGACGTCATG-AG----------TGCCGCCCAC------------------TGTTGCT---CA--------------------------------------------CAGT-----------------GGA----G-AGTAC----TGAA------CAATGCG--TATACT------CTGG-----GTTC------AT----TA---GCTGC-TASizeHit CountTotal NormTotal
No Reads
droKik1
G---CAATGAGAGCAGCGATCGGGATCTGTTCGTCTCAGCTTTGAGCCCCAGCAGCATCGGAGATGTGCACGTAAGTAGCAC------------GGTTGGCTGGATGAGCTCAATCACAACAG-G-------------------AT-G-C--TTATTCAATTAGCTCTAATT-TC--G-----------GGGCGG---CTCTCGC----------------------------TCTTTATCAGCTGCCG---CGACGACTGTTGCTTTCGCTTTGTTTGG-CTT---------------TCGGG-CGGCGACGTCACG-AG----------TGCCGCCCCCCAAGCCAGCAGAGAACCTTGTTGCT---CA------------------------------------------------------------------------------------------------------TCCATTTAAGCT--CT-----ACTC------TC----TC---------TCSizeHit CountTotal NormTotal
No Reads
droFic1
ATCGGAATGAAAG---------CGACCTATTTGTGTCGGCTCTGAGTCCCTCCAGCATCGGGGATATACATGTAAGTCGCAG---------CAACT--------------------ACAACC-GGA--AGCCACCCAGATCGGCAG-C-A--CCCTTAAATTGCCTCCAATT-GC--G-----------GGGCGT---CGGTC------------------------------GTTTTATCAG---------------------CGCTCGCTTTGTTTGG-CTT---------------T---G-TGACTACGTCACG-AG----------TGCCGCCCACC-----AGA---AAAGCTTGTTGCA---TGCT----------------------------------------------------------------------AA--T--AA-----AT-----------------ATTTATT--------T---GCCTTCTC------CACTCC------CASizeHit CountTotal NormTotal
No Reads
droEle1
ACAGGAATGAAAG---------TGATCTATTTGTGTCGGCACTAAGTCCCAGCAGTATCGGAGATATACACGTAAGTCGGGG---------GAATATACAG-------GCT-----ATATCC-GCA--TGCAACCTACATTCGGAG-C-C--CTATTTAATTAGCTCCAATT-TC--G-----------GGGCGT---CGCTC------------------------------GCTTTATCAA---------------------CATTCGCTTTGTTTGGGCTT---------------T---G-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACCGGAACGAAAG---------TGATCTATTTGTGTCGGCATTGAGTCCCAGCAGCATGGGAGATATACACGTAAGTCGGGG---------AAGCATAGCC----------------------GGA--TACAGCCCGCACAAAGAG-C-C--CTACTTAAATAGCTACGATT-TC--G-----------GGGCGT---CGCTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-CTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---ACAGCTTGTTGCT---TTAT---------------------------------------------------------------ATA----T------------------------------CCATTTCATTG--CTGCTTCTTCCTCTCT------CAATCC------CCSizeHit CountTotal NormTotal
No Reads
droBia1
ACCGCAACGAAAG---------TGATCTTTTTGTGTCCGCCCTGAGTCCCAGCAGCATCGGCGATGTCCACGTAAGTGGGGT---------CAGTGGACCC-------------ACCTACCCGGGG--AGCAGCCCGCATTCAGAG-C-TCTCTATTGAATTAGCTCCAATT-TC--G-----------GGGCGT---CGGTC------------------------------GCTTTATCAG---------------------CGTACGCTTTGTTTGG-CTT---------------T---G-CAACTACGTCACG-AG----------TGCCGCCCACC-----AGC---GAAGCTTGTTGCT---CCGT---------------------------------------------------------------AGA----ATTAGA--AAATGTATATGTA-------------------------TCTAATGCC------ACTTCCGTTCC------CASizeHit CountTotal NormTotal
No Reads
droTak1
ACCGAAATGAAAG---------TGATTTATTTGTTTCGGCTTTGAGTCCCAGCAGCATCGGCGATATCCATGTAAGTAGCGC---------CGATAAACCC----------------------G-G--AATAACCCGCATCCGGAGGT-TCTATACTAAATTAGTTCCAATT-TC--G-----------GGGCGT---CGGTC------------------------------GCTTTATCAG---------------------CGTTCGCTTTGTTTGG-CTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCCT---------------------------------------------------------------GGA----AATATAT------------------------CCC-------------------CTTTTCT------CTAATT------TASizeHit CountTotal NormTotal
No Reads
droEug1
ATCGGAATGAAAG---------TGATCTATTTGTGTCGGCACTGAGCCCCAGCAGTATTGGGGATATCCACGTAAGTGAGGG---------CAATAAACCC----------------------GTG--AGCAGCCCGCATCAGGAG-G-T--CTATTAAATTAGCTTCCATT-TC--G-----------GGGCGT---CGGTT------------------------------GCTTTATCAG---------------------AGTTTGCTTTGTTTGG-TTT---------------T---GATGACTACGTCACG-AG----------AGCCGCCCACC-----AGC---AAAGCTTGTTGCT---TCAT---------------------------------------------------------------AGA----AA---------TGAGTTTGAG-------------------------TATGAG---TTTTT------TACACC------CTSizeHit CountTotal NormTotal
No Reads
dm3
ATCGCAACGAAAG---------TGATCTCTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTTGGGG---------CACGAAACAC----------------------GGG--AGCAGCCCGCATCGACAG-C-CC-CCAGTAATTGAGCTCCCGTT-TT--G-----------GGGCGTCGTCGGTC------------------------------GTTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------AGA----AACACAA----TGAATTTGCG-------------------------TCTTAATGC------ATT-------C------CCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGCG-------------------------TCTTAATGC------...................18120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GATCTCTTCGTGTCGGCCTTGAGTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GG--AGCAGCCCGCATCGACAG-C-......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TATCAG---------------------CGCTCGCTTTGTTTGT-C.................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AAGTTGGGG---------CACGAAACAC----------------------GGG--...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CCTTGAGTCCCAGCAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................TTGAGTCCCAGCAGCATCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTCGTGTCGGCCTTGAGTCCCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGTGTCGGCCTTGAGTCCCAGCAGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCTCTTCGTGTCGGCCTTGAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGTGTCGGCCTTGAGTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TCGTGTCGGCCTTGAGTCCCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GGCCTTGAGTCCCAGCAGCATCGGGGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................GTGTCGGCCTTGAGTCCCAGCAGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACGAAAG---------TGATCTCTTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................ATCAG---------------------CGCTCGCTTTGTTA.....................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................G---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-..........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCTCTTCGTGTCGGCCTTGAGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................TCGTGTCGGCCTTGAGTCCCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AGCATCGGGGATATACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GAAAG---------TGATCTCTTCGTGTCGGCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................TGAGTCCCAGCAGCATCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTTTATCAG---------------------CGCTCGCTTTGTTTGG-..................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
........................................................................TAAGTTGGGG---------CACGAAACAC----------------------G...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................AGCTCCCGTT-TT--G-----------GGGCGTCGTCGGTC------------------------------..................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................AGCTCCCGTT-TT--G-----------GGGCGTCGTCGGTC------------------------------GT................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................TTCGTGTCGGCCTTGAGTCCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................................................................................................................................................................................................TCACG-AG----------TGCCGCCCACC-----AGC---..........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................TCGTGTCGGCCTTGAGTCCCAGCAGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AG---------TGATCTCTTCGTGTCGGCCTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TCGTGTCGGCCTTGAGTCCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGTGTCGGCCTTGAGTCCCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................CAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGG.......................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GCAGCATCGGGGATATACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCAACGAAAG---------TGATCTCTTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
......................................................................................................................................................C-CCAGTAATTGAGCTCCCGTT-T.............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
............................CTTCGTGTCGGCCTTGAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................CGTGTCGGCCTTGAGTCCCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AG---------TGATCTCTTCGTGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCGGCCTTGAGTCCCAGCAGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATCGCAACGAAAG---------TGATCTTTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTTGGGT---------CACGAATCGC----------------------GGG--AGCAGCCCGCATCGGCAG-C-CC-CCAGTAATTGAGCTCCCATT-TC--G-----------GGGCGTCGTCGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACA-TG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------AGA----AACACAA----TGAATTTGCG-------------------------TCTTAATGC------ACTC-------------CCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............G---------TGATCTTTTCGTGTCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
..........................CTTTTCGTGTCGGCCTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
...........AG---------TGATCTTTTCGTGTCGGCCTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000000000
..................................................................................................................................................................................................TCGTCGGTC------------------------------GCTTTATCAG---------------------CGCTC..............................................................................................................................................................................................................................................................2411.00100100000000000000
.............................TTCGTGTCGGCCTTGAGTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..........................CTTTTCGTGTCGGCCTTGAGTCCCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...............................................................................................................................................................................................................................................................................TTTGTTTGG-TTT---------------T---G-TGGC......................................................................................................................................................................................................................1821.00200000200000000000
...........................................................................GTTGGGT---------CACGAATCGC----------------------GGG--A..........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
................................................................................................................................................................TGAGCTCCCATT-TC--G-----------GGG...........................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
....................................................CAGCATCGGGGATATACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
droSec2
ATCGCAACGAAAG---------TGATCTTTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTTGGGT---------CACGAAACGC----------------------GGG--AGCAGCCCGCATCGGCAG-C-CC-CCAGTAATTGAGCTCCCATT-TC--G-----------GGGCGTCGTCGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACA-TG----------TGCCGCCCACC-----AGA---AAATCTTGTTGCT---CCAT---------------------------------------------------------------AGA----AACACAA----TGAATTTGCG-------------------------TCTTAATGC------ACTC-------------CCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................ACGC----------------------GGG--AGCAGCCCGCATCGGC...........................................................................................................................................................................................................................................................................................................................................................................................2312.0020200
........GAAAG---------TGATCTTTTCGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
............................TTTCGTGTCGGCCTTGAGTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
...........................................GAGTCCCAGCAGCATCGGGGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
droYak3
ATCGGAACGAGAG---------TGATCTTTTCGTGTCGGCCCTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTGGGGG---------CAAAAAACGC----------------------TGA--TGCAGCCCGCATCGGTAG-C-C--CCAGTAATTGAGCTCCTATT-TC--G-----------GGGCGTCGTCGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------A---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------AGG----GACACAT----AGAATTCGCG-------------------------TCTTATTGC------ACTCCCAAT---------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........GAG---------TGATCTTTTCGTGTCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................GATCTTTTCGTGTCGGCCCTGAGTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................TTTTCGTGTCGGCCCTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..........GAG---------TGATCTTTTCGTGTCGGCCCTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...........................TTTTCGTGTCGGCCCTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
......................................GCCCTGAGTCCCAGCAGCATCGGGGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
......ACGAGAG---------TGATCTTTTCGTGTCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
droEre2
ATCGGAACGAAAG---------TGATCTTTTCGTGTCGGCCTTGAGTCCCAGCAGCATCGGGGATATACACGTAAGTGGGGG---------CAAGCATCGC----------------------GGG--AGCAGCCCGCATCGGTAG-C-C--CCAGTAATTGAGCTCCCATT-TC--G-----------GGGCGT---CGGTC------------------------------GCTTTATCAG---------------------CGCTCGCTTTGTTTGG-TTT---------------T---G-TGGCTACGTCACG-AG----------TGCCGCCCACC-----AGC---AAAGCTTGTTGCT---CCAT---------------------------------------------------------------TGG----GACACAT----TGAATTTGCG-------------------------TCTTATTGC------ACTCCCAAT---------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........AAG---------TGATCTTTTCGTGTCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
............G---------TGATCTTTTCGTGTCGGCCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..................................GTCGGCCTTGAGTCCCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..................................GTCGGCCTTGAGTCCCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
........................................CTTGAGTCCCAGCAGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
............................TTTCGTGTCGGCCTTGAGTCCCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000

Generated: 05/19/2015 at 05:20 PM