ID:

dvi_11954

 Coordinate:

scaffold_12963:14891755-14892023 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_2159:1]; CDS [Dvir\GJ17576-cds]; exon [dvir_GLEANR_2159:2]; CDS [Dvir\GJ17576-cds]; intron [Dvir\GJ17576-in]

No Repeatable elements found

Sense Strand Reads

----##############################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAGATGTGCGGAGGCTGTTGTGGTCCATGCGGAGGCTGTGGTCCCTGCGGAGGTTGTGGTCCTTGTAATCATTGGCCTTGCTGTGGCCCGCACAGTCCGCTTTGCGGAGCTCCCTCGGCCATTCCTTGTTCACCCACGGGTCTGGAATTGTTGTAATACATCATCAATCTATCCATGAAAGCTCGCGCTCGTCCGAATGTAAATAGTTACCTCGATTGTCCGTTCCCTTCTTCGTCTACCAGCCCGAGACTGCGCGTGCCACAGCATGGGTCATACAAAAATCTTGTAGCTAGACTCTAATTGTTGATTCCCTTGAAGGCTGCTACTGTTGTCCCACTCGCTACTTGAGAAGGAAAGACAATGCACCC
**************************************************((((..(((((.......)))))(((((((((((((((.(((.(((((......((.(((....))).)).................((((.((((.((((.((........)).))))...........(((....))).....(((((...((((((.....)))))).))))).............)))))))).))))).))).))))))))).))))))(((((.....)))))....((.((........)).))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060670
9_testes_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060678
9x140_testes_total
 V053
head
 SRR060680
 9xArg_testes_total
 V116
male body		 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060673
9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060689
160x9_testes_total
 SRR060667
160_females_carcasses_total
 GSM1528803
follicle cells		 SRR060662
9x160_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060672
9x160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
.....................TGGTCCATGCGGAGGCTG.......................................................................................................................................................................................................................................................................................................................................... 18 0 2 2.00 4 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTCACAGACCGCTTTGCGGAG................................................................................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCACAGCCCGCTTTGCTGAGCTC................................................................................................................................................................................................................................................................ 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGCCCGCTTTGCTGAGCTC................................................................................................................................................................................................................................................................ 23 3 3 1.67 5 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 0
...........................ATGCGGAGGCTGTGGTCCC................................................................................................................................................................................................................................................................................................................................... 19 0 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTCACAGCCCGCTTTGCGGAG................................................................................................................................................................................................................................................................... 22 3 2 1.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GCTACTGTTGTCCCACTCGC........................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CCATGCGGAGGCTGTGGTCCC................................................................................................................................................................................................................................................................................................................................... 21 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TGCGGAGGCTGTTGTGGTCC...................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCTCACAGCCCGCTTTGCGGAG................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGTGGTCCATGCGGAGGCTG.......................................................................................................................................................................................................................................................................................................................................... 20 0 2 1.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTCACAGCCCGCTTTGCGGAGCT................................................................................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AGGCTGCTACTGTTGTCCCACT.............................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TGCGGAGGCTGTGGTCCC................................................................................................................................................................................................................................................................................................................................... 18 0 2 1.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........GCGGAGGCTGTTGTGGTCCA..................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................AAGGAAAGACAATGCACCC 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................GCACAGCCCGCTTTGCTGAGCT................................................................................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TTGTGGTCCATGCGGAGGCTG.......................................................................................................................................................................................................................................................................................................................................... 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..AGATGTGCGGAGGCTGTTG............................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TCTACCAGCCCGAGACTGCGCGTGT............................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....TGTGCGGAGGCTGTTGTGGTCC...................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GTTGTCCCACTCGCTACTTGAGAAG................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAGCACAGTCAGCTTTGCGGAGC.................................................................................................................................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................CTGTTGTCCCACTCGCTAC........................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TAATTGTTGATTCCCTTGAAGGC................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TTGAGAAGGAAAGACAATGCA... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACAGTCAGCTTTGCGGAG................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGCCCGCTTTGCGGAGCTC................................................................................................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGTGCGGAGGCTGTTGTGGTCCA..................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................AAGGAAAGACAATGCACC. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGTCCGCTTTGCTGAGAT................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCGCAGCCCGCTTTGCGGAGCTA................................................................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AAGATGTGCGGAGGCTGTTGTGGTCCC..................................................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CTGCGGAGGCTGTGGTCCC................................................................................................................................................................................................................................................................................................................................... 19 1 3 0.67 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................GTTGTGGTTCATGCGGAGGCTG.......................................................................................................................................................................................................................................................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTGGTCCATGCGGAGGCTGT......................................................................................................................................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCACAGGCAGCTCTGCGGAGCT................................................................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTGGTCCATGCGGAGGCTG.......................................................................................................................................................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GGTCCATGCGGAGGCTGTG........................................................................................................................................................................................................................................................................................................................................ 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCCATGCGGAGGCTGTGGT...................................................................................................................................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................TCTCACAGCCCGCTTTGCGGAGC.................................................................................................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCACAGTCAGCTTTGGGGGGCT................................................................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGTGGTCCATGCGGAGGC............................................................................................................................................................................................................................................................................................................................................ 18 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGGTCCATGCGGAGGCTGTGGTCC.................................................................................................................................................................................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGTGCGGAGGCGGTTTTGTTCC...................................................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCCATGCGGAGGCTGTGGTCCCTGC................................................................................................................................................................................................................................................................................................................................ 25 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTCACAGCCCGCTTTGCGGA.................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................CCATGCGGAGGCTGTGGTCCCTGC................................................................................................................................................................................................................................................................................................................................ 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............CGGTTGTGGTCCATGCGG................................................................................................................................................................................................................................................................................................................................................ 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GTTGTGGTCCATGCGGAG.............................................................................................................................................................................................................................................................................................................................................. 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTCCATGCGGAGGCTGTGG....................................................................................................................................................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................GCACAGCCCGCTTTGTCGAGCT................................................................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGCCCGCTTTGCGGCGCT................................................................................................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCACAGCCCGCTTTGATGAGCTC................................................................................................................................................................................................................................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAGCACAGCCCGCTTTGAGGAG................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCTGCGGAGGCTGTGGTCCC................................................................................................................................................................................................................................................................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGTCAGCTTTGCTGAGCTC................................................................................................................................................................................................................................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTGTCCGTTGCCTTGTTCCT..................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................GTCCCTGCGGAGGCTGTGGTCCC................................................................................................................................................................................................................................................................................................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTCACAGTCCGCTTTGAGGAGC.................................................................................................................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGTCCGCTTTGATGAGCTC................................................................................................................................................................................................................................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGCCAGCTTTGCGGAGCTC................................................................................................................................................................................................................................................................ 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GAGGCTGTGGCCCCTGAAGA............................................................................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................GCACAGACAGCTTTGAGGAGCT................................................................................................................................................................................................................................................................. 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCACAGTCAGCTTTGCAGAGCT................................................................................................................................................................................................................................................................. 22 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CCTTGCGAAGGCTGGGGTC..................................................................................................................................................................................................................................................................................................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACAGCCCGCGTTGAGGAGCT................................................................................................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTGCGCTGGCTGTTGTGG......................................................................................................................................................................................................................................................................................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................ATAGTGATTGGCCTTGCTG............................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................GTTCCGCAGCATGGGTCT............................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTCTACACGCCTCCGACAACACCAGGTACGCCTCCGACACCAGGGACGCCTCCAACACCAGGAACATTAGTAACCGGAACGACACCGGGCGTGTCAGGCGAAACGCCTCGAGGGAGCCGGTAAGGAACAAGTGGGTGCCCAGACCTTAACAACATTATGTAGTAGTTAGATAGGTACTTTCGAGCGCGAGCAGGCTTACATTTATCAATGGAGCTAACAGGCAAGGGAAGAAGCAGATGGTCGGGCTCTGACGCGCACGGTGTCGTACCCAGTATGTTTTTAGAACATCGATCTGAGATTAACAACTAAGGGAACTTCCGACGATGACAACAGGGTGAGCGATGAACTCTTCCTTTCTGTTACGTGGG
**************************************************((((..(((((.......)))))(((((((((((((((.(((.(((((......((.(((....))).)).................((((.((((.((((.((........)).))))...........(((....))).....(((((...((((((.....)))))).))))).............)))))))).))))).))).))))))))).))))))(((((.....)))))....((.((........)).))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060657
140_testes_total
 SRR060679
140x9_testes_total
 M028
head
 SRR060666
160_males_carcasses_total
 V053
head
 GSM1528803
follicle cells		 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR1106727
larvae
.......................................................................................................................................................................................AGCGCTAGCAGCCTGACAT....................................................................................................................................................................... 19 3 8 1.50 12 12 0 0 0 0 0 0 0 0 0
..................AACACCAGGTACGCCTCCGAC.......................................................................................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCAAGGCAAGAAGCTGAT.................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGGGAACTTCCGACGGGG.......................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................CTTCCTTGATGTTACGGGGG 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................GGCAAGGCAAGAAGCTGA................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CAATGGAAGAAGCAGGTGATC.............................................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................CGAGCGCTAGCAGCCTGAC......................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGGAAGAATCATATGCT............................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................GCGAGCAGCCTGACAT....................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...........................................................................CGGCACGTCGCCGGGCGTG................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................CTGGAGGGAGGCGGTA...................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:14891705-14892073 + dvi_11954 AAAGATGTG---C------G---------------GAGGCTGTTGTGG------TCCATG------------CGGAG--GC--------------------------------TGTGGTCCCTGCGGAGGTTGTGGTCCTTGTAATCATTGGCCTTGCTGTGGCCCGCACAGTCCGCTTTGCGGAGCTCCCTCGGCCATTCCTTGTTCA---------------------------------------------------------------------------CCCACGGGTCTGGAATTGTTGTAATACATCATCAATCTATCCATGAAAGCTCGCGCTCGTC------------C---GA--ATGTAAA-TA------------------------------------------------------------------GTTA-C------------------------CT------------CG-----------ATT--------------------G----TCCGTTCCCT----------------TCTTCGTC--------------------------------------------TACCA-----------------------------------------------------------------------------------------------------------G----CCCGA----GACTGCGCGTGCCACAGCATGGGTC--ATAC-------AAAAATCTTGTAGCTAG---A--------------C-----TC--TAATTGTT----G---ATTCCCTT--GAAGGCTGCT--ACTGTTGTCCCACTCGCTACTTGAGAAGGAA---AGACAATGCACCC
droMoj3 scaffold_6500:17850284-17850606 + AAAA-TGTG---C------G---------------GA-------------------------------------------------------------------------------GGCGGTTGTGGAGGCTGTGGCCCATGCGGAG---------GCTGTGGCC-------------------------------CATGCGGTGGTTGTGGACCCTGTGAGTTCATTGCCATTCCCGACTTGGGATCTAGATATTCCACTCATTCTGAAGCTT----GTCCGA---------TTCGAAATAATGCAACAGAGCAATA-----------------------------------------------------------------------------------------------------------------------------------------------GAT------------TTATCC-TTCA-----------ATC--------------------G----TC------------------------CGCCCGTCCGTCCACCA--------G--------------------TCCA---T------------------------CT--------------------------------------------------------------------------------------------------AATTTGGAGCGCTACAGCAGGGCT---G----------AAGAGCATTGTGTGTAG---A--------------T-----CG--TAATGAAA-A--CA-TTCTTT--T--TCAGG-----CTGCGTCTGTCCCACGCGCTACTTGAAGAGATCAGAGGAGCATATGCCC
droGri2 scaffold_15126:4477503-4477971 + AAAAATGTG---C------G---------------GAGGCGGATGTGG------TCCATG------------CGGA----------------G------GC---------GGATGTGGTCCATGCGGAGGTTGTTGTCCCAGTCATT---GGCCCTGCTGTGGTCCGCACAGTCCGCCATGCGGTGCACCTTCGCCAATCCCGTGCTCACCAGCACCAGGCGTCTGTTG-------------------------TCCGCCACTGCCCGAGGGTGGCATACCCGATCCACGGGTTTGGAATTGTTGGAATACCCCTCCAACCTATCCATGTAAATTGCCGCCCGCGTCCGATT-----T---TCAG-TTGTCC-CAATCACCAAATAG---------------------AAAACTGTCAATTCTGGT-------------------------------------T-------AC-------------------------------------------------------------------------------TGTTCGTTTTTC----A--------C--------------------TCCGTTAATCA-----------------------------------------------------------------------------------TCCGTACACCGC-------------ATCGGCCGG----AACTGAGTGTGCCACAGCATGGGTCAAAAAT-------ATGAATATTGTAGGTAG---A--------------T-----TC--TAATATAA-A------AACTCCTT--TAAGGCTGCT--GTTTTTGTCCCACCCGCTATTTAAAAAGGAGAGAAGATCAGGCACCC
droWil2 scf2_1100000004585:6974864-6975267 + AG-----------GA----------------------CGTGCCTGCGGCG---GTGGAAG------------CG----------------------------------------GAAACGGTGGAGGATGCTGTGCTCCATGTAATGACACACCTTGCTGTGGCCCTCACAGTCCGCCATGCGGTGCCCCGGCACCGATACCGTGCTCACCCGTTCCTGGTATGTGCGC-------------------------TCCGCCATTACCAGAGGGCGGTATACCCGATCCACGTGTATGGAACTTTTGTAATACGCCACCCACGTATCCATGTAAGTGA----------------------------------CC-CA------------------------------------------------------------------ACCAACCACACGATTCC-----T-------TC-------------------------------------------------------------------------------TGATCCTACTTC------------------------------------C-----------------------CTTGGGTGT-----------------------------------------------------------ATCATGG--GGCACCGT--------ATG-TCTAC----GACTGAGTTAGCCACAGCATTATC--------------TTAGTTCAAGT-----------------------TGTTTCT-ATA--ACTT--TTTTTG-TACTTAACCAACAA-------AG------GTCCTAGTCATTTCCTGAGCAAAAAGGAGGAAAACATGCCA
dp5 4_group5:275171-275649 - CG-----------GT----------------------GGTTGCTGCTCCGCCGGGCCATG------------CTCAT--CG------------------------------C--C------TGGTCCTTGCTGTGGACCCTGTAATACAACTGCGTGTTGTGGCCCGCACAGTCCTCCATGTGGTGCTCCTTCGCCTATACCTTGCTCTCCTGCGCCGGGTTGTTGCTG-------------------------TCCCCCTTTGCCCGAGGGTGGTATACCCGATCCACGGGTCTGGAATTGTTGTAATACCCCCCCATCGTATCCATGTAAGTTCTCGTCCGCC------------T-------------------------------------------TGGCCCTGGAGCTGTCCATCCTGGGCTCGTTGTTATTCCTTTCCGCGTGTCGTTTCTTT--GT-------CC-------------------------------------------------------------------------------TGTCTGTCCGT-------------------------------------------------------------------GCATAA--T------------A-----------------TG-GGACGGCGTAGTGGTGA-GG---------AGCATTCCG-C-----ATGTTT--GGA--TACTGAGCGTGCCACAGCACCAAC---AAACTTGGATC-----AGAAAAGATCAG--------------TGGTGTAACC---T--------C---C--GTTGTATCC--TAA-------AGCTCCCTGCTGTGCCCGCTACCTTGCGAAAAAGGAGGAGAACAGGCCC
droPer2 scaffold_5:4780725-4781203 - CG-----------GT----------------------GGTTGCTGCTCCGCCGGGCCATG------------CTCAT--CG------------------------------C--C------TGGTCCTTGCTGTGGACCCTGTAATACAACTGCGTGTTGTGGCCCGCACAGTCCTCCATGTGGTGCTCCTTCGCCTATACCTTGCTCCCCTGCGCCGGGTTGTTGCTG-------------------------TCCCCCTTTGCCCGAGGGTGGTATACCCGATCCACGGGTCTGGAATTGTTGTAATACCCCCCCATCGTATCCATGTAAGTTCTCGTCCGCC------------T-------------------------------------------TGGCCCTGGAGCTGTCCATCCTGGGCTCCTTGTTATTCCTTTCCGCGTGTCGTTTCTTT--GT-------CC-------------------------------------------------------------------------------TGTCTGTCCGT-------------------------------------------------------------------GCATAA--T------------A-----------------TG-GGACAGCGTAGTGGTGA-GG---------AGCATTCCG-C-----ATGTTT--GGA--TACTGAGCGTGCCACAGCACCAAC---AAACTTGGATC-----AGAAAAGATCAG--------------TGGTGTAACC---T--------C---C--GTTGTATCC--TAA-------AGCTCCCTGCTGTGCCCGCTACCTTGCGAAAAAGGAGGAGAACAGGCCC
droAna3 scaffold_12916:8385215-8385549 + GC-----------T------------------------------GTGC-------------------------------------------------------------------------TCCAGCCTGCTGCGGACCCTGTAATAATGTGCCCTGCTGTGGCCCGCACAGTCCGCCCTGCGGTGCTCCGTCTCCCATTCCATGCTCCC-CGCGCCGGTCGTGTGT--------------------------------------------------------------------------------------------CTTATCCTTTTAAGTCGTTC--CGAT------CCGTTTCGGG--CT-GGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCGTC------------------------------------CGGTTCCCT---------C----CCTTCGTCCG---ATC------------AAAGAGCAGTGAGTTTGG-----------------TTCG-G---------A----------GCCTT----CACGT----GGCTGTGCAGGTCACAGCAGTTTA---A--TTTAAATA-----CGACAAGATCAG---CCC---------GATTTGATA-CTT--------T---TT-TTCCGCTC---TAA-------AGGCTTCTGCCCCAAGCGCTATCTCGTGGACAA---GGAGAACGCTCCA
droBip1 scf7180000396572:3010239-3010670 - AAGA-TGCCTTGC------C---------------AACCTTGCTGTGC-------------------------------------------------------------------------TCCTGCCTGCTGCGGAACCTGTAATAACGTGCCCTGCTTTGGCCTGCACAGTCCGCCCTGCGGTGCTCCGTCGCCCATTCCGTGCTCCTCTGCGCCAGGCATGTGCTG-------------------------CCCGCCGTTAT---------------CCGATCCCCATGTGCTGAACTACTAAAACACACCAGCCACTTATCCATGTGAGTTGT---CCGAT------CCAATCCGGG--AA-GGTGCC-CA------------------------------------------------------------------CTCGTCC--------TC-----T-------CC-------------------------------------------------------------------------------CAGCCCTTCGTC------------------------------------CAGATTCCT---------T----CCTCCGTTCA---ATT------------AAAGAGCAGTAAGTTGGG-----------------TAAGAA------------A-------GCCCG----CACGT----GGCTGTGCAGGCCACAGCAGTTCC---ATAA-------TAATTCGGGAAGATCAG---CCC---------GATTTGATA-CTT--------GATTTC-CGCTCCTCC--CAA-------GGCT-TCTGCCCCAAGCGCTACCTCGTGGACAA---GGAGAACGCACCT
droKik1 scf7180000302468:351091-351557 + GC-----------GG---------------------CGGCGGTTGCGGCGGTGGCTCTGG------------CTG-------------------------C---------GGACCTAGTGGAGGCGGCTGCTGCGGACCCTGTAATGAAACCCCATGCTGTGGCCCACACAGTCCACCTTGCGGAGCTCCTTCGCCCATACCTTGTTCCCCGGCGCCGGGCATGTGTGT-------------------------GCCTCCACTGCCCGAGGGCGGTATCCCCGATCCGCGTGTTTGGAATTACTGTAACACGCCCCCAACGTATCCATGTAAGTCAGTC--CGAC------CC----C---GAA-GCTCCCC-CA------------------------------------------------------------------CATCCCGACCCGAGTCCCCAGT--------CC-------------------------------------------------------------CT----------------TCTTCGCCTGTC------------------------------------CGATACTAA---------TCCCT-------CGA--AAAT------------AGAAAACCAAAATTTGCG-----------------TTAAGGATCTCGAA-----------------ATGCGC--GTT--GACTGTGCGGGCCACTGCATCTGA---ACCT-------TCGATCTGTGTGATCAG---A----------TGTGGTGACT-C-T------------CG-GCCTTCTCC--CCA-------AGCTTCT------GGGCGGTACCTTGTGAACAA---GGACAACATGCCC
droFic1 scf7180000453815:142411-142902 - --------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAAACTCCCTGCTGCGGCCCGCACAGTCCGCCATGCGGGGCCCCCTCGCCCATTCCCTGCTCCCCAGCTCCTGGCATGTGCTG-------------------------TCCCCCGCTCCCCGAAGGCGGCATTCCCGATCCGCGAGTCTGGAACTACTATAACACGCCTCCCACCTATCCATGTAAGTCGGTCTCCGCA------------T---AA--GCTTACT-TA-----------------------------------------------------------------------AAATCGGGCCCCAGAAAGTCCT---G---------------TTGTCCGTA----TGTGCATTTGTCCGTATGTCTGTTTG--------TCCGTATGTCTGTATGTCTGTTTGTC----TGTTTGTCCGTATGTCTGTTTGTCCGTATG----TCCGACGAAGA---------ACCAT-------CTA--T---TT-AAAAGGAAT----------G-------AAGGT----------------GG---------AGCAGGTGA-G-----GCGATC--GGC--AACTGTGCGTGCCACAGCATTTGG------------------ATCAAGTGC----------A-------CGGTGTCACG-CTA--A------A--AGTTCCTTCTCC--TGA-------AGCTCCTTGCCCTAAGCGCTACCTTGTTAACAA---GGACAACATGCCC
droEle1 scf7180000490640:505615-505996 - --------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGCGGACCCTGTAATGAAACGCCCTGCTGTGGCCCACACAGTCCGCCGTGCGGTGCTCCGTCGCCCATTCCGTGCTCTCCAGCTCCGGGCATGTGCTG-------------------------TCCTCCTCTGCCCGAAGGTGGCATTCCCGATCCGCGTGTCTGGAACTACTATAACACACCCCCTACGTATCCATGTAAGTCCGGTTCCGTT------------CATG--TA-AGCCCC-CG------------------------------------------------------------------------------------------------TC-------------------------------------------------------------------------------TGTCCGTCCGTC----C--------G--------------------TCCG------T---------------------TCGTT-----------------------------------AGGG----------------AG---------AGCACGGA----T---ACGTAC--GGT--CAACGTGCGTGCCACAGCGTCTC----GAAC-------TCGATCCTTGCGATCGG---ACCT-------TGGTGTGACG-CCT------------TG--CCTTCTCC--CGA-------AGCTCCCTGCCCCAAACGCTACCTTGTGAACAA---GGACAACATGCCC
droRho1 scf7180000778441:69333-69826 - --------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAAACCCCCTGCTGTGGCCCGCACAGTCCCCCCTGCGGCGCTCCGTCGCCCATTCCGTGTTCTCCTGCCCCGGGCATGTGCTG-------------------------CCCCCCGCTCCCCGAAGGCGGCATTCCCGATCCGCGTGTCTGGAACTACTACAACACGCCCGTGACGTACCCATGTAAGTCCGGTCCTGGG------------G---TAGA-CCTGAC-CA------------------------------------------------------------------TTCCCCC---------------T-------CCCGTCCATCTGA---TCGTCCATCTGATCGTCCATCTGATCGTCCATCTGATCG--------TCCATCTGATCGTCCATCTGATCGTC----CATCTGATCGTCCATCTGATCGTCCATCTGATCGTC----CATCC---------------GA----TCGAAA--T------------A-----------------AA-GG----------------AG---------AGCACGGGA-C-----GAGGGC--GGC--CAGCGTGCGTGCCACAGCGTCTTG---GAAC-------TAGATCCCCGCGATCAG---TTCT-------TGGTGTGACC-CT-------------CG-TTCCTTCCC--CCA-------AGCTCCCTGCCCCAAACGCTACCTTGTGAACAA---GGACAACATGCCC
droBia1 scf7180000302422:2567942-2568387 - --------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAGACTCCATGCTGTGGCCCGCACAGTCCGCCCTGCGGAGCACCGTCGCCGATTCCGTGCTCCCCTGCGCCGGGCATGTGCTG-------------------------TCCTCCGCTGCCCGAAGGCGGCATTCCCGACCCCCGCGTATGGAACTACTATAACACGCCCCCAACGTATCCATGTAAGTCTGGCTTTGCG------------C---AA--GCGTGAC-CA------------------------------------------------------------------CTCG-CCACCCGAACCCACGAATTCCGTGTCC------------CA-----------TCT--------------------G----TCTGCCCGTT----------------TGTCCGTCTGTC------------------------------------CGCTGGAGT-------------------------AA--CGTAAAAAGCCTA----------A-------AAGGA----------------GA---------AGCACATGA-C-----CGGTGC--GGC--GCCTATGCGTGCCACAGCATTGGAT--ATAT-------TTGATCCTTGCGATCCGAAGATCG-------AGGGCTAACG-CTG------------TA-ACCTTCTCA--TGA-------AGCACCCTGCCCCAGACGCTACCTTGTGAACAA---GGATAACGCACCA
droTak1 scf7180000415361:92109-92546 + --------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAAACGCCCTGCTGTGGCCCGCACAGTCCGCCCTGCGGAGCCCCCTCGCCCATTCCGTGCTCCCCTGCCCCGGGCATGTGCTG-------------------------CCCCCCTCTTCCCGAGGGCGGGATTCCCGATCCGCGTGTCTGGAACTACTATAACACGCCCCCAACGTATCCATGTAAGTCTGGTCCCGAG--------------------------------------------------------------------------------------------------------------CCCACAAAT------------CCATCCATCCA-------TCCAACC--------------------ACCCA--------CCCATC------------CGTCCGTCCGTCTGTTTGCCCA-------------------------TCGTCTGCGAGTCT-----------------GGAGAA--TGT-AGAGGCATC----------A-------AAGGA----------------GG---------AGCACGTGG-C-----ATGTGG--GGC--AACTGTGCGAGCCACAGCATCTGG---T-------------ATCCCTGCGATCAG---TCCAGGTTGTAAG--C-----TA--TAACCT--A---T--AACCTCTCC--TAA-------AGCCCCCTGCCCCAGACGCTACCTTGTGAACAA---GGATAACGCGCCC
droEug1 scf7180000409463:2316298-2316841 + AA-----------GTGTGCGGT------ATTTG------------TCCTTAT------------GACCTCTTCTTA--CCCCTTCGCACGCAGCGTAAG---GACTCAACATGTGTAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCGCACAGTCCGCCATGTGGAGCCCCGTCGCCCATTCCTTGCTCTCCTGCCCCAGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAAGGCGGAATTCCCGATCCTCGTGTCTGGAACTACTACAACACACCCCCAACGTATCCATGTAAGTCGGGTCAAGCG------------G---GA--ACATGACCTA-------AATTTCAATTTGTCTGTTTTGTCCGTTTATTTGTCCGTTTT--------------------------------------------------------------------------------------------------G----TCCGTTTATT----------------TGTCCGTCTGTC----------------CGCGTTTTGGTCTG----TCCTTC--------TTGAGAATCGT-------GTA--A--GGT-AAGCGCACT----------G-------CAGGA----------------AG---------AGAACGTGG-C-----TAGCTC--GGCAGCACAGTGCGTGCCACAGCATCGAA---GA-C-------TTGATCCCTTTGATCAG---TCTG-------TGGTGTGACA-CTT------------TA-----CCTCT--TGA-------AGGTTTCTGCCCCAAACGCTATCTAATCAACAA---GGATAACGCACCC
dm3 chr2L:6800272-6800731 - AAAA-----------------------------------------------A-------GTA-TAACATCTT-----AACTTTTCGCCCGCAGCGTTAGACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCTCCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAACTTATCCATGTAAGTCCGCTTCCGAG------------C---TAAA-TGCTCC-CA------------------------------------------------------------------CTCCACCATACGAACCCACAAAT-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGTTTTCGA-----------------------------------------------------------------------------------ACCTTGAGAGGCACGGG----AAGG----CAATG----GATTGTGTGTGCCACAGCAGCGGA---GAGT-------CTGGTCCTTGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTTAACAA---GGATAACGCGCCT
droSim2 2l:6574323-6574806 - dsi_8195 AAAAGTGAG---T------GTTATAAATTTTTGTTCA--------------A-------GCA-TAACATATT-----AACTTGTCGCTCGCAGCCTTAGACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGTGGAGCCCCGTCTCCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACACCCCCAACTTATCCATGTAAGTCTGCTTCCAAG------------C---TAAA-TGCTCC-CA------------------------------------------------------------------TTCCACAATACGAACCCACAAAT-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGATTTCGA-----------------------------------------------------------------------------------ACCTTGAGATGCACGGG----GAGG----CAGTG----GACTGTGTGCGCCACAGCAGCGGA---GAGT-------CTGATCCTTGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCT
droSec2 scaffold_3:2339011-2339479 - AA-----------GT-------------ATTTGTTCA--------------A-------GCA-TAACATATT-----AACTTGTCGCTCGCAGCCTTAGACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGTGGAGCCCCGTCTCCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACACCCCCAACTTATCCATGTAAGTCTGCTTCCAAG------------C---TAAA-TGCTCC-CA------------------------------------------------------------------TTCCACAATACGAACCCACAAAT-------TG-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGATTTCGA-----------------------------------------------------------------------------------ACCTTGAGACGCACGGG----GAGG----CAATG----GACTGTGTGTGCCACAGCAGCGGA---GAGT-------CAGATCCTTGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCT
droYak3 2L:6107913-6108376 + dya_245 AA-----------GT-------------ATTTGTTTA--------------A-------GAATTAACATCTA-----AAATTCTCACCTGCAGCGCCAAGCAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACCCCCTGCTGTGGCCCCCACAGTCCGCCATGTGGCGCCCCGTCTCCCATTCCGTGCTCGCCTGCTCCTGGCATGTGCTG-------------------------CCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCGCGTGTCTGGAACTACTACAACACGCCCCCAACTTATCCATGTAAGTCCGCTTCCGAG------------T---AAAAGCGCTAC-CA------------------------------------------------------------------TTCCACAA--------------T-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC----T--------G--------------------TCCGTTGGTGA-----------------------------------------------------------------------------------TTCTTGGGATGCACGGGGG-GGGGG----CACTG----GACTGAGTGGGCCACGGCAGCGGA---GAAG-------CTGGTCCAAGCGATCAG-----------------TGTGACT-ATT------------CG-TTCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCC
droEre2 scaffold_4929:15716387-15716861 - AGAGATAAG---T------T---------------AACGGGTATA--------------GGG-TAACATCTTATTATAATTTTCCACTCGCAG------ACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGTGGAGCCCCGTCTCCCATCCCGTGCTCCCCTGCGCCGGGCATGTGCTG-------------------------CCCTCCGCTGCCCGAAGGCGGCATTCCCGATCCGCGTGTCTGGAACTACTACAACACGCCCCCCACGTATCCATGTAAGTCCGGTCCCGAG------------A---AAAC-TGCTAC-CA------------------------------------------------------------------CTCCACAATCCGAACCCAAAAAT-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGCTGGCGA-----------------------------------------------------------------------------------ATCTTGAGATGCACGGA----GAGG----CACTG----GACTGCGTGGGCCACAGCGGCGGA---GAAG-------TTGGTCCCAGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAAGATGTG---C------G---------------GAGGCTGTTGTGG------TCCATG------------CGGAG--GC--------------------------------TGTGGTCCCTGCGGAGGTTGTGGTCCTTGTAATCATTGGCCTTGCTGTGGCCCGCACAGTCCGCTTTGCGGAGCTCCCTCGGCCATTCCTTGTTCA---------------------------------------------------------------------------CCCACGGGTCTGGAATTGTTGTAATACATCATCAATCTATCCATGAAAGCTCGCGCTCGTC------------C---GA--ATGTAAA-TA------------------------------------------------------------------GTTA-C------------------------CT------------CG-----------ATT--------------------G----TCCGTTCCCT----------------TCTTCGTC--------------------------------------------TACCA-----------------------------------------------------------------------------------------------------------G----CCCGA----GACTGCGCGTGCCACAGCATGGGTC--ATAC-------AAAAATCTTGTAGCTAG---A--------------C-----TC--TAATTGTT----G---ATTCCCTT--GAAGGCTGCT--ACTGTTGTCCCACTCGCTACTTGAGAAGGAA---AGACAATGCACCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................TGG------TCCATG------------CGGAG--GC--------------------------------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1822.004000000010000000000002000000010000000000000000000000000000000000
.........................................................ATG------------CGGAG--GC--------------------------------TGTGGTCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.503000000030000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT--ACTGTTGTCCCACTCGC..............................2011.001000000000000000000000000000000100000000000000000000000000000000
.......................................................CCATG------------CGGAG--GC--------------------------------TGTGGTCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.002000000010000000000001000000000000000000000000000000000000000000
.......TG---C------G---------------GAGGCTGTTGTGG------TCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...........................................TGTGG------TCCATG------------CGGAG--GC--------------------------------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.002000000000100000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCT--ACTGTTGTCCCACT.................................2211.001000000000000000000000000000010000000000000000000000000000000000
..........................................................TG------------CGGAG--GC--------------------------------TGTGGTCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.002000000010000000000000000000000000100000000000000000000000000000
........G---C------G---------------GAGGCTGTTGTGG------TCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAA---AGACAATGCACCC1911.001000000000000000000000000000000000100000000000000000000000000000
..........................................TTGTGG------TCCATG------------CGGAG--GC--------------------------------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.002000000000000000000002000000000000000000000000000000000000000000
..AGATGTG---C------G---------------GAGGCTGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------------------------------------TACCA-----------------------------------------------------------------------------------------------------------G----CCCGA----GACTGCGCGTGT............................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
.....TGTG---C------G---------------GAGGCTGTTGTGG------TCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCCCACTCGCTACTTGAGAAG...................2511.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTGTCCCACTCGCTAC...........................1911.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGTT----G---ATTCCCTT--GAAGGC.....................................................2311.001000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAAGGAA---AGACAATGCA...2111.001000000000000000000000000000010000000000000000000000000000000000
.....TGTG---C------G---------------GAGGCTGTTGTGG------TCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAA---AGACAATGCACC.1811.001000000000000000000000000000000010000000000000000000000000000000
.AAGATGTG---C------G---------------GAGGCTGTTGTGG------TCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000010000000000000000000000000000000000000000000000000000000
............................................GTGG------TCCATG------------CGGAG--GC--------------------------------TGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000100000000000000000000000000000000000000000000000000000
............................................GTGG------TCCATG------------CGGAG--GC--------------------------------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000100000000000000000000000000000000000000000000000000000
..............................................GG------TCCATG------------CGGAG--GC--------------------------------TGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000100000000000000000000000000000000000000000000000000000
...............................................G------TCCATG------------CGGAG--GC--------------------------------TGTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001000000000000000000000000000000000000000000000000000000000
...........................................TGTGG------TCCATG------------CGGAG--GC--------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000100000000000000000000000000000000000000000000000000000
.............................................TGG------TCCATG------------CGGAG--GC--------------------------------TGTGGTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501000000000000000000000000000010000000000000000000000000000000000
......................................................TCCATG------------CGGAG--GC--------------------------------TGTGGTCCCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501000000000000000000000000000000000000000000000000000000000000010
.......................................................CCATG------------CGGAG--GC--------------------------------TGTGGTCCCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501000000000000000000000000000000000100000000000000000000000000000
.........................................GTTGTGG------TCCATG------------CGGAG--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000001000000000000000000000000000000000000000000
...............................................G------TCCATG------------CGGAG--GC--------------------------------TGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000000000000000000000000100000000000000000000000
droMoj3
AAAA-TGTG---C------G---------------GA-------------------------------------------------------------------------------GGCGGTTGTGGAGGCTGTGGCCCATGCGGAG---------GCTGTGGCC-------------------------------CATGCGGTGGTTGTGGACCCTGTGAGTTCATTGCCATTCCCGACTTGGGATCTAGATATTCCACTCATTCTGAAGCTT----GTCCGA---------TTCGAAATAATGCAACAGAGCAATA-----------------------------------------------------------------------------------------------------------------------------------------------GAT------------TTATCC-TTCA-----------ATC--------------------G----TC------------------------CGCCCGTCCGTCCACCA--------G--------------------TCCA---T------------------------CT--------------------------------------------------------------------------------------------------AATTTGGAGCGCTACAGCAGGGCT---G----------AAGAGCATTGTGTGTAG---A--------------T-----CG--TAATGAAA-A--CA-TTCTTT--T--TCAGG-----CTGCGTCTGTCCCACGCGCTACTTGAAGAGATCAGAGGAGCATATGCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........G---C------G---------------GA-------------------------------------------------------------------------------GGCGGTTGTGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
droGri2
AAAAATGTG---C------G---------------GAGGCGGATGTGG------TCCATG------------CGGA----------------G------GC---------GGATGTGGTCCATGCGGAGGTTGTTGTCCCAGTCATT---GGCCCTGCTGTGGTCCGCACAGTCCGCCATGCGGTGCACCTTCGCCAATCCCGTGCTCACCAGCACCAGGCGTCTGTTG-------------------------TCCGCCACTGCCCGAGGGTGGCATACCCGATCCACGGGTTTGGAATTGTTGGAATACCCCTCCAACCTATCCATGTAAATTGCCGCCCGCGTCCGATT-----T---TCAG-TTGTCC-CAATCACCAAATAG---------------------AAAACTGTCAATTCTGGT-------------------------------------T-------AC-------------------------------------------------------------------------------TGTTCGTTTTTC----A--------C--------------------TCCGTTAATCA-----------------------------------------------------------------------------------TCCGTACACCGC-------------ATCGGCCGG----AACTGAGTGTGCCACAGCATGGGTCAAAAAT-------ATGAATATTGTAGGTAG---A--------------T-----TC--TAATATAA-A------AACTCCTT--TAAGGCTGCT--GTTTTTGTCCCACCCGCTATTTAAAAAGGAGAGAAGATCAGGCACCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AG-----------GA----------------------CGTGCCTGCGGCG---GTGGAAG------------CG----------------------------------------GAAACGGTGGAGGATGCTGTGCTCCATGTAATGACACACCTTGCTGTGGCCCTCACAGTCCGCCATGCGGTGCCCCGGCACCGATACCGTGCTCACCCGTTCCTGGTATGTGCGC-------------------------TCCGCCATTACCAGAGGGCGGTATACCCGATCCACGTGTATGGAACTTTTGTAATACGCCACCCACGTATCCATGTAAGTGA----------------------------------CC-CA------------------------------------------------------------------ACCAACCACACGATTCC-----T-------TC-------------------------------------------------------------------------------TGATCCTACTTC------------------------------------C-----------------------CTTGGGTGT-----------------------------------------------------------ATCATGG--GGCACCGT--------ATG-TCTAC----GACTGAGTTAGCCACAGCATTATC--------------TTAGTTCAAGT-----------------------TGTTTCT-ATA--ACTT--TTTTTG-TACTTAACCAACAA-------AG------GTCCTAGTCATTTCCTGAGCAAAAAGGAGGAAAACATGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CG-----------GT----------------------GGTTGCTGCTCCGCCGGGCCATG------------CTCAT--CG------------------------------C--C------TGGTCCTTGCTGTGGACCCTGTAATACAACTGCGTGTTGTGGCCCGCACAGTCCTCCATGTGGTGCTCCTTCGCCTATACCTTGCTCTCCTGCGCCGGGTTGTTGCTG-------------------------TCCCCCTTTGCCCGAGGGTGGTATACCCGATCCACGGGTCTGGAATTGTTGTAATACCCCCCCATCGTATCCATGTAAGTTCTCGTCCGCC------------T-------------------------------------------TGGCCCTGGAGCTGTCCATCCTGGGCTCGTTGTTATTCCTTTCCGCGTGTCGTTTCTTT--GT-------CC-------------------------------------------------------------------------------TGTCTGTCCGT-------------------------------------------------------------------GCATAA--T------------A-----------------TG-GGACGGCGTAGTGGTGA-GG---------AGCATTCCG-C-----ATGTTT--GGA--TACTGAGCGTGCCACAGCACCAAC---AAACTTGGATC-----AGAAAAGATCAG--------------TGGTGTAACC---T--------C---C--GTTGTATCC--TAA-------AGCTCCCTGCTGTGCCCGCTACCTTGCGAAAAAGGAGGAGAACAGGCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CG-----------GT----------------------GGTTGCTGCTCCGCCGGGCCATG------------CTCAT--CG------------------------------C--C------TGGTCCTTGCTGTGGACCCTGTAATACAACTGCGTGTTGTGGCCCGCACAGTCCTCCATGTGGTGCTCCTTCGCCTATACCTTGCTCCCCTGCGCCGGGTTGTTGCTG-------------------------TCCCCCTTTGCCCGAGGGTGGTATACCCGATCCACGGGTCTGGAATTGTTGTAATACCCCCCCATCGTATCCATGTAAGTTCTCGTCCGCC------------T-------------------------------------------TGGCCCTGGAGCTGTCCATCCTGGGCTCCTTGTTATTCCTTTCCGCGTGTCGTTTCTTT--GT-------CC-------------------------------------------------------------------------------TGTCTGTCCGT-------------------------------------------------------------------GCATAA--T------------A-----------------TG-GGACAGCGTAGTGGTGA-GG---------AGCATTCCG-C-----ATGTTT--GGA--TACTGAGCGTGCCACAGCACCAAC---AAACTTGGATC-----AGAAAAGATCAG--------------TGGTGTAACC---T--------C---C--GTTGTATCC--TAA-------AGCTCCCTGCTGTGCCCGCTACCTTGCGAAAAAGGAGGAGAACAGGCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GC-----------T------------------------------GTGC-------------------------------------------------------------------------TCCAGCCTGCTGCGGACCCTGTAATAATGTGCCCTGCTGTGGCCCGCACAGTCCGCCCTGCGGTGCTCCGTCTCCCATTCCATGCTCCC-CGCGCCGGTCGTGTGT--------------------------------------------------------------------------------------------CTTATCCTTTTAAGTCGTTC--CGAT------CCGTTTCGGG--CT-GGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCGTC------------------------------------CGGTTCCCT---------C----CCTTCGTCCG---ATC------------AAAGAGCAGTGAGTTTGG-----------------TTCG-G---------A----------GCCTT----CACGT----GGCTGTGCAGGTCACAGCAGTTTA---A--TTTAAATA-----CGACAAGATCAG---CCC---------GATTTGATA-CTT--------T---TT-TTCCGCTC---TAA-------AGGCTTCTGCCCCAAGCGCTATCTCGTGGACAA---GGAGAACGCTCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG-G---------A----------GCCTT----CACGT----GGC.....................................................................................................................................................................1930.331100000
.................................................................................................................................................................................................TCCCATTCCATGCTCCC-CGCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.331000100
droBip1
AAGA-TGCCTTGC------C---------------AACCTTGCTGTGC-------------------------------------------------------------------------TCCTGCCTGCTGCGGAACCTGTAATAACGTGCCCTGCTTTGGCCTGCACAGTCCGCCCTGCGGTGCTCCGTCGCCCATTCCGTGCTCCTCTGCGCCAGGCATGTGCTG-------------------------CCCGCCGTTAT---------------CCGATCCCCATGTGCTGAACTACTAAAACACACCAGCCACTTATCCATGTGAGTTGT---CCGAT------CCAATCCGGG--AA-GGTGCC-CA------------------------------------------------------------------CTCGTCC--------TC-----T-------CC-------------------------------------------------------------------------------CAGCCCTTCGTC------------------------------------CAGATTCCT---------T----CCTCCGTTCA---ATT------------AAAGAGCAGTAAGTTGGG-----------------TAAGAA------------A-------GCCCG----CACGT----GGCTGTGCAGGCCACAGCAGTTCC---ATAA-------TAATTCGGGAAGATCAG---CCC---------GATTTGATA-CTT--------GATTTC-CGCTCCTCC--CAA-------GGCT-TCTGCCCCAAGCGCTACCTCGTGGACAA---GGAGAACGCACCTSizeHit CountTotal NormTotal
No Reads
droKik1
GC-----------GG---------------------CGGCGGTTGCGGCGGTGGCTCTGG------------CTG-------------------------C---------GGACCTAGTGGAGGCGGCTGCTGCGGACCCTGTAATGAAACCCCATGCTGTGGCCCACACAGTCCACCTTGCGGAGCTCCTTCGCCCATACCTTGTTCCCCGGCGCCGGGCATGTGTGT-------------------------GCCTCCACTGCCCGAGGGCGGTATCCCCGATCCGCGTGTTTGGAATTACTGTAACACGCCCCCAACGTATCCATGTAAGTCAGTC--CGAC------CC----C---GAA-GCTCCCC-CA------------------------------------------------------------------CATCCCGACCCGAGTCCCCAGT--------CC-------------------------------------------------------------CT----------------TCTTCGCCTGTC------------------------------------CGATACTAA---------TCCCT-------CGA--AAAT------------AGAAAACCAAAATTTGCG-----------------TTAAGGATCTCGAA-----------------ATGCGC--GTT--GACTGTGCGGGCCACTGCATCTGA---ACCT-------TCGATCTGTGTGATCAG---A----------TGTGGTGACT-C-T------------CG-GCCTTCTCC--CCA-------AGCTTCT------GGGCGGTACCTTGTGAACAA---GGACAACATGCCCSizeHit CountTotal NormTotal
No Reads
droFic1
--------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAAACTCCCTGCTGCGGCCCGCACAGTCCGCCATGCGGGGCCCCCTCGCCCATTCCCTGCTCCCCAGCTCCTGGCATGTGCTG-------------------------TCCCCCGCTCCCCGAAGGCGGCATTCCCGATCCGCGAGTCTGGAACTACTATAACACGCCTCCCACCTATCCATGTAAGTCGGTCTCCGCA------------T---AA--GCTTACT-TA-----------------------------------------------------------------------AAATCGGGCCCCAGAAAGTCCT---G---------------TTGTCCGTA----TGTGCATTTGTCCGTATGTCTGTTTG--------TCCGTATGTCTGTATGTCTGTTTGTC----TGTTTGTCCGTATGTCTGTTTGTCCGTATG----TCCGACGAAGA---------ACCAT-------CTA--T---TT-AAAAGGAAT----------G-------AAGGT----------------GG---------AGCAGGTGA-G-----GCGATC--GGC--AACTGTGCGTGCCACAGCATTTGG------------------ATCAAGTGC----------A-------CGGTGTCACG-CTA--A------A--AGTTCCTTCTCC--TGA-------AGCTCCTTGCCCTAAGCGCTACCTTGTTAACAA---GGACAACATGCCCSizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGCGGACCCTGTAATGAAACGCCCTGCTGTGGCCCACACAGTCCGCCGTGCGGTGCTCCGTCGCCCATTCCGTGCTCTCCAGCTCCGGGCATGTGCTG-------------------------TCCTCCTCTGCCCGAAGGTGGCATTCCCGATCCGCGTGTCTGGAACTACTATAACACACCCCCTACGTATCCATGTAAGTCCGGTTCCGTT------------CATG--TA-AGCCCC-CG------------------------------------------------------------------------------------------------TC-------------------------------------------------------------------------------TGTCCGTCCGTC----C--------G--------------------TCCG------T---------------------TCGTT-----------------------------------AGGG----------------AG---------AGCACGGA----T---ACGTAC--GGT--CAACGTGCGTGCCACAGCGTCTC----GAAC-------TCGATCCTTGCGATCGG---ACCT-------TGGTGTGACG-CCT------------TG--CCTTCTCC--CGA-------AGCTCCCTGCCCCAAACGCTACCTTGTGAACAA---GGACAACATGCCCSizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAAACCCCCTGCTGTGGCCCGCACAGTCCCCCCTGCGGCGCTCCGTCGCCCATTCCGTGTTCTCCTGCCCCGGGCATGTGCTG-------------------------CCCCCCGCTCCCCGAAGGCGGCATTCCCGATCCGCGTGTCTGGAACTACTACAACACGCCCGTGACGTACCCATGTAAGTCCGGTCCTGGG------------G---TAGA-CCTGAC-CA------------------------------------------------------------------TTCCCCC---------------T-------CCCGTCCATCTGA---TCGTCCATCTGATCGTCCATCTGATCGTCCATCTGATCG--------TCCATCTGATCGTCCATCTGATCGTC----CATCTGATCGTCCATCTGATCGTCCATCTGATCGTC----CATCC---------------GA----TCGAAA--T------------A-----------------AA-GG----------------AG---------AGCACGGGA-C-----GAGGGC--GGC--CAGCGTGCGTGCCACAGCGTCTTG---GAAC-------TAGATCCCCGCGATCAG---TTCT-------TGGTGTGACC-CT-------------CG-TTCCTTCCC--CCA-------AGCTCCCTGCCCCAAACGCTACCTTGTGAACAA---GGACAACATGCCCSizeHit CountTotal NormTotal
No Reads
droBia1
--------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAGACTCCATGCTGTGGCCCGCACAGTCCGCCCTGCGGAGCACCGTCGCCGATTCCGTGCTCCCCTGCGCCGGGCATGTGCTG-------------------------TCCTCCGCTGCCCGAAGGCGGCATTCCCGACCCCCGCGTATGGAACTACTATAACACGCCCCCAACGTATCCATGTAAGTCTGGCTTTGCG------------C---AA--GCGTGAC-CA------------------------------------------------------------------CTCG-CCACCCGAACCCACGAATTCCGTGTCC------------CA-----------TCT--------------------G----TCTGCCCGTT----------------TGTCCGTCTGTC------------------------------------CGCTGGAGT-------------------------AA--CGTAAAAAGCCTA----------A-------AAGGA----------------GA---------AGCACATGA-C-----CGGTGC--GGC--GCCTATGCGTGCCACAGCATTGGAT--ATAT-------TTGATCCTTGCGATCCGAAGATCG-------AGGGCTAACG-CTG------------TA-ACCTTCTCA--TGA-------AGCACCCTGCCCCAGACGCTACCTTGTGAACAA---GGATAACGCACCASizeHit CountTotal NormTotal
No Reads
droTak1
--------------------------------------------------------------------------------------------------------------------------TGTGGATGCTGTGGACCCTGTAATGAAACGCCCTGCTGTGGCCCGCACAGTCCGCCCTGCGGAGCCCCCTCGCCCATTCCGTGCTCCCCTGCCCCGGGCATGTGCTG-------------------------CCCCCCTCTTCCCGAGGGCGGGATTCCCGATCCGCGTGTCTGGAACTACTATAACACGCCCCCAACGTATCCATGTAAGTCTGGTCCCGAG--------------------------------------------------------------------------------------------------------------CCCACAAAT------------CCATCCATCCA-------TCCAACC--------------------ACCCA--------CCCATC------------CGTCCGTCCGTCTGTTTGCCCA-------------------------TCGTCTGCGAGTCT-----------------GGAGAA--TGT-AGAGGCATC----------A-------AAGGA----------------GG---------AGCACGTGG-C-----ATGTGG--GGC--AACTGTGCGAGCCACAGCATCTGG---T-------------ATCCCTGCGATCAG---TCCAGGTTGTAAG--C-----TA--TAACCT--A---T--AACCTCTCC--TAA-------AGCCCCCTGCCCCAGACGCTACCTTGTGAACAA---GGATAACGCGCCCSizeHit CountTotal NormTotal
No Reads
droEug1
AA-----------GTGTGCGGT------ATTTG------------TCCTTAT------------GACCTCTTCTTA--CCCCTTCGCACGCAGCGTAAG---GACTCAACATGTGTAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCGCACAGTCCGCCATGTGGAGCCCCGTCGCCCATTCCTTGCTCTCCTGCCCCAGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAAGGCGGAATTCCCGATCCTCGTGTCTGGAACTACTACAACACACCCCCAACGTATCCATGTAAGTCGGGTCAAGCG------------G---GA--ACATGACCTA-------AATTTCAATTTGTCTGTTTTGTCCGTTTATTTGTCCGTTTT--------------------------------------------------------------------------------------------------G----TCCGTTTATT----------------TGTCCGTCTGTC----------------CGCGTTTTGGTCTG----TCCTTC--------TTGAGAATCGT-------GTA--A--GGT-AAGCGCACT----------G-------CAGGA----------------AG---------AGAACGTGG-C-----TAGCTC--GGCAGCACAGTGCGTGCCACAGCATCGAA---GA-C-------TTGATCCCTTTGATCAG---TCTG-------TGGTGTGACA-CTT------------TA-----CCTCT--TGA-------AGGTTTCTGCCCCAAACGCTATCTAATCAACAA---GGATAACGCACCCSizeHit CountTotal NormTotal
No Reads
dm3
AAAA-----------------------------------------------A-------GTA-TAACATCTT-----AACTTTTCGCCCGCAGCGTTAGACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCTCCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAACTTATCCATGTAAGTCCGCTTCCGAG------------C---TAAA-TGCTCC-CA------------------------------------------------------------------CTCCACCATACGAACCCACAAAT-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGTTTTCGA-----------------------------------------------------------------------------------ACCTTGAGAGGCACGGG----AAGG----CAATG----GATTGTGTGTGCCACAGCAGCGGA---GAGT-------CTGGTCCTTGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTTAACAA---GGATAACGCGCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................CTCCTGCTCCGGGCATGTGCTG-------------------------TCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATCCCCGTGTCTGGAACTACTACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CCCGATCCCCGTGTCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GTTAGACAAACTCAACATGTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GGATGTGGATGCTGTGGACCCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CAACATGTGCAACGGATGTGGATGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CATGTGCAACGGATGTGGATGCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GACAAACTCAACATGTGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AACATGTGCAACGGATGTGGATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AACATGTGCAACGGATGTGGATGCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGCCACAGCAGCGGA---GAGT-------C.................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CCGATCCCCGTGTCTGGAACTACTACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GGCATTCCCGATCCCCGTGTCTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGTGCAACGGATGTGGATGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GCATTCCCGATCCCCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................AAACTCAACATGTGCAACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GATCCCCGTGTCTGGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................CGGGCATGTGCTG-------------------------TCCCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAACTCAACATGTGCAACGGATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................ACATGTGCAACGGATGTGGATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGTAATGAAACACCCTGCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATTCCCGATCCCCGTGTCTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ACAAACTCAACATGTGCAACGGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GACAAACTCAACATGTGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATTCCCGATCCCCGTGTCTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGTGCAACGGATGTGGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GTCTCCCATCCCGTGCTCTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CATGTGCAACGGATGTGGATGCTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CCTGCTCCGGGCATGTGCTG-------------------------TCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CGATCCCCGTGTCTGGAACTACTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CGTTAGACAAACTCAACATGTGCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CGATCCCCGTGTCTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GGATGTGGATGCTGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AACATGTGCAACGGATGTGGATGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCACCATACGAACCCACAAAT-------TC-------------------------------------------------------------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAT-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------G.........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TCTCCTGCTCCGGGCATGTGCTG-------------------------TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CAACATGTGCAACGGATGTGGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GGATGTGGATGCTGTGGACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GACAAACTCAACATGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ACACCCTGCTGTGGCCCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGG----AAGG----CAATG----GATTGATC................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GGATGTGGATGCTGTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAAGTGAG---T------GTTATAAATTTTTGTTCA--------------A-------GCA-TAACATATT-----AACTTGTCGCTCGCAGCCTTAGACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGTGGAGCCCCGTCTCCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACACCCCCAACTTATCCATGTAAGTCTGCTTCCAAG------------C---TAAA-TGCTCC-CA------------------------------------------------------------------TTCCACAATACGAACCCACAAAT-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGATTTCGA-----------------------------------------------------------------------------------ACCTTGAGATGCACGGG----GAGG----CAGTG----GACTGTGTGCGCCACAGCAGCGGA---GAGT-------CTGATCCTTGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................GATGCTGTGGACCCTGTAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200002000000000000
...................................................................................................................................................................................TGTGGAGCCCCGTCTCCCATCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
..............................................................................................................................GATGCTGTGGACCCTGTAATGAAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
....................................................................................................................AACGGATGTGGATGCTGTGGACCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001000000000000
...........................................................................................................AACATGTGCAACGGATGTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................GCAACGGATGTGGATGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
......................................................................................................................................................................................................................................................................................................TGGAACTACTACAACACACCCCCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001000000000000
droSec2
AA-----------GT-------------ATTTGTTCA--------------A-------GCA-TAACATATT-----AACTTGTCGCTCGCAGCCTTAGACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGTGGAGCCCCGTCTCCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTG-------------------------TCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACACCCCCAACTTATCCATGTAAGTCTGCTTCCAAG------------C---TAAA-TGCTCC-CA------------------------------------------------------------------TTCCACAATACGAACCCACAAAT-------TG-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGATTTCGA-----------------------------------------------------------------------------------ACCTTGAGACGCACGGG----GAGG----CAATG----GACTGTGTGTGCCACAGCAGCGGA---GAGT-------CAGATCCTTGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................AACATGTGCAACGGATGTGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..........................................................................................................CAACATGTGCAACGGATGTGGATGCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
droYak3
AA-----------GT-------------ATTTGTTTA--------------A-------GAATTAACATCTA-----AAATTCTCACCTGCAGCGCCAAGCAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACCCCCTGCTGTGGCCCCCACAGTCCGCCATGTGGCGCCCCGTCTCCCATTCCGTGCTCGCCTGCTCCTGGCATGTGCTG-------------------------CCCCCCTCTGCCCGAGGGCGGCATTCCCGATCCGCGTGTCTGGAACTACTACAACACGCCCCCAACTTATCCATGTAAGTCCGCTTCCGAG------------T---AAAAGCGCTAC-CA------------------------------------------------------------------TTCCACAA--------------T-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC----T--------G--------------------TCCGTTGGTGA-----------------------------------------------------------------------------------TTCTTGGGATGCACGGGGG-GGGGG----CACTG----GACTGAGTGGGCCACGGCAGCGGA---GAAG-------CTGGTCCAAGCGATCAG-----------------TGTGACT-ATT------------CG-TTCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................ATGTGGATGCTGTGGACCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
AGAGATAAG---T------T---------------AACGGGTATA--------------GGG-TAACATCTTATTATAATTTTCCACTCGCAG------ACAAACTCAACATGTGCAACGGATGTGGATGCTGTGGACCCTGTAATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGTGGAGCCCCGTCTCCCATCCCGTGCTCCCCTGCGCCGGGCATGTGCTG-------------------------CCCTCCGCTGCCCGAAGGCGGCATTCCCGATCCGCGTGTCTGGAACTACTACAACACGCCCCCCACGTATCCATGTAAGTCCGGTCCCGAG------------A---AAAC-TGCTAC-CA------------------------------------------------------------------CTCCACAATCCGAACCCAAAAAT-------TC-------------------------------------------------------------------------------TGTCCGTCCGTC------------------------------------CGCTGGCGA-----------------------------------------------------------------------------------ATCTTGAGATGCACGGA----GAGG----CACTG----GACTGCGTGGGCCACAGCGGCGGA---GAAG-------TTGGTCCCAGCGATCAG-----------------TGTGACT-ATT------------CG-TCCTTCTCC--CAA-------AGCTCCTTGCCCCAGGCGTTACCTTGTGAACAA---GGATAACGCGCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................GATCCGCGTGTCTGGAACTACTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100

Generated: 05/16/2015 at 11:26 PM