ID:

dvi_11940

 Coordinate:

scaffold_12963:14746501-14746651 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.4 -19.0 -19.0

Flybase annnotation

CDS [Dvir\GJ21323-cds]; exon [dvir_GLEANR_669:2]; intron [Dvir\GJ21323-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTTAAGTCGTTAAAATTGCGTTCATATTAAGTGAAACTTGAATGAAAAGTTCAAAAAAACAAATATATATTTTAATAAATCAACTAGTGAGTAAATTATCAAATATAATTTAAAATTATGCCTATACTAAAATGTACAATATGCATATATAAAACTATGCTTGAATATGTTTTAATATAAGTTTGTGTATGTTTTGCAGGTGGAAATTAAGAAAGCGGAGCCACGTGATGGTTCCGGAGGACAGAACTC
**************************************************...(((((..((((((.((((((..((((..((((.((((...((((((((.....))))))))....(((((.(((((......)))...)).)))))......))))...))))...))))..)))))).)))))).....)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060663
160_0-2h_embryos_total
 V116
male body		 M061
embryo
 SRR060658
140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060667
160_females_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060683
160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 SRR060669
160x9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060655
9x160_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR1106717
embryo_6-8h
 SRR1106718
embryo_6-8h
 SRR1106729
mixed whole adult body
 SRR060672
9x160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060677
Argx9_ovaries_total
...................................................................................................................................................................................................AAGCAGGTGGAAATTAAGAAAGCGGA.............................. 26 2 1 4.00 4 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGACA...... 24 0 1 4.00 4 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAAATTAAGAAAGCGGA.............................. 18 0 1 4.00 4 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAAATTAAGAAAGCGGAG............................. 19 0 1 3.00 3 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGACA...... 21 0 1 3.00 3 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAAATTAAGAAAGCGGAGC............................ 20 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGCGATGGTTCCGGAG.......... 20 1 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGAC....... 20 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TATAAGTTTGTGTATGTATTGC.................................................... 22 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GATGGTTCCGGAGGACAGAA... 20 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CACGTGATGGTTCCGGAGGACAGA.... 24 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGCAGGTGGAAATTAAGAAAGCGGA.............................. 25 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGTGGAAATTAAGAAAGCGGA.............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TTCCGGAGGACAGAACTC 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAGAAAGCGGAGCCACGTGATGG.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGACAGAA... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CGGTTCCGGAGGACAGAACTC 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGAC....... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCTATACTAAAATGTATAATATGCAT....................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AATTAAGAAAGCGGAGCC........................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAAGCAGGTGGAAATTAAGAAAGCGGA.............................. 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAG.......... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GTTTGTGTATGTTTTG..................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................AGGTGGAAATTAAGAAAGCGGAGCC........................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGCGATGGTTCCGGAGGAC....... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGACAGAA... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTAAATTAAGAAAGCGGAGC............................ 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTGATGGTTCCGGAGGACAGAA... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGACAGAAC.. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAAATTAAGAAAGCGGAGCCACG........................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AATTAAGAAAGCGGAGCCACG........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGCAGGTGGACATTAAGAAAGCGGA.............................. 26 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AATTAAGAAAGCGGAGCCACGTGATGG.................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GATGGTTCCGGAGGACAGAACT. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGCCA...... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CACGTAATCGTTCCGGAGG......... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAATTAAGAAAGCGGAGCC........................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTGCAGGTGGAAATTAAGAAAGCGGA.............................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGTGGAAATTAAGAAAGCGGA.............................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CACGCGATGGTTCCGGAGGA........ 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAGCGGAGCCACGTGATGG.................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GTTCCGGAGGACAGAACT. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TATAAGTTTGTGTATGTTTT...................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................ACGCGATGGTTCCGGAGGACA...... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGTTCCGGAGGACAGAACT. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGACAG..... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGCAGGTGGAAATTAAGAAAGC................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGAG....... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CACGTGATGGTTCCGGAGGACA...... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTAGTGGAAATTAAGAAAGCGGAGC............................ 26 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCGATGGTTCCGGAGGACAGAACT. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCACGTGATGGTTCCGGA........... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGCGGAGCCATGTGATGGTTC............... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TCCGGAGGACCGAAC.. 15 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TATGATTTGCAGGGGGAAA........................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGCAGGTGGAAATTAAGA..................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GAACTATGCCTGAATATGGT.............................................................................. 20 3 8 0.25 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAACTATGCCTGAATAGGGT.............................................................................. 20 3 8 0.25 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................TAAGAAAGCGCAGACACG........................ 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GAACTATGCCTGAATAGGTT.............................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTTAAAATGAAGCCTATGCT......................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CATGTGGGAATTAAGAAA................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................TTGAATATGTTTTATTAAAA..................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................GATGTCGAAATTAAGAAAGC................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATAAATTCAGCAATTTTAACGCAAGTATAATTCACTTTGAACTTACTTTTCAAGTTTTTTTGTTTATATATAAAATTATTTAGTTGATCACTCATTTAATAGTTTATATTAAATTTTAATACGGATATGATTTTACATGTTATACGTATATATTTTGATACGAACTTATACAAAATTATATTCAAACACATACAAAACGTCCACCTTTAATTCTTTCGCCTCGGTGCACTACCAAGGCCTCCTGTCTTGAG
**************************************************...(((((..((((((.((((((..((((..((((.((((...((((((((.....))))))))....(((((.(((((......)))...)).)))))......))))...))))...))))..)))))).)))))).....)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 V053
head
..AAATTGAGCAGTTTTACCGC..................................................................................................................................................................................................................................... 20 3 17 0.06 1 1 0
......................................................................................................................................................................................GAAATACATCCAAAACGTC.................................................. 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:14746451-14746701 - dvi_11940 TATTTAAGTCGTTAAAATTGCGTTCA---TATTAAGTGAAACTTGAATGAAAAGT-----TCAAAAAAACAAAT-ATATATTTTAATAAATCAACTAGTGAGTAAATTATCAAATATAATTTAAAATTATGCCTATACTAAAATGTAC-----AATA-TGCATATATA--AAACTATGCTT-GAATATGTTTT----------------------------------------------------------------------AA-TATAAGT--TTG--TGT-ATGTTTTGCAGGTGGAAATTAAGAAAGCGGAGCCACGTGATGGTTCCGGAGGACAGAACTC
droMoj3 scaffold_6500:17685805-17685881 - G-T------------------------------------CTTAATATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-GTGTTTTGCAGGTGGAGATTAAGAAAGCTGAGCCACGCGATGGTTCCGGTGGACAGAACTC
droGri2 scaffold_15126:4616947-4617019 + TA-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT----------G--TGTGTGTTTTTGCAGGTGGAAATTAAGAAGGCGGAGCCACGCGACGGTTCAGGTGGGCAGAACTC
droWil2 scf2_1100000004585:6771076-6771155 + TT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT--ACTT--TTTTCTTT-GTAATTTTCAGGTGGAAATTAAGAAAGCCGAACCCAGGGATGGCTCTGGTGGTCAAAACTC
dp5 4_group5:420079-420137 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGGTGGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGACAGAACTC
droPer2 scaffold_5:4918257-4918315 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGGTGGAGATCAAAAAGGCCGAGCCTCGTGACGGATCTGGCGGACAGAACTC
droAna3 scaffold_12916:8504410-8504501 + G-T------------------------------------CTGA--------GTGT------------------------ATTTTGAATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------A--TGTGTTATTTCGCAGGTCGAGATCAAGAAGGCCGAGCCTCGCGATGGATCTGGCGGCCAGAACTC
droBip1 scf7180000396572:2894131-2894190 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAGAACTC
droKik1 scf7180000302468:225519-225576 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGACAGGTTGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGGCAGAACTC
droFic1 scf7180000453815:286771-286827 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGTGGCCAGAACTC
droEle1 scf7180000490970:154287-154339 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGTGGTCAGAACTC
droRho1 scf7180000780014:102212-102431 + A-TTCAATTTCTTAAAACTCAATACCTTTTTTTAAATAAAGTTAAGATGAAATAATGAAATAAAAAATATAGATCCTTTA----------CT-------------------------------------------TTTTAAG-----TT--------------------------------------------------TACTTTAGTTTTAATTTGAAAAACGAATTTATTATATATAAAGC----------AAAAATTCTAAT-CAC--CA--TTGTTTAT-CCGCTCCTCAGGTCGAGATCAAGAAGGCCGAGCCTCGCGACGGATCTGGCGGCCAGAACTC
droBia1 scf7180000302422:2705019-2705097 + TT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TAC--CA--ATATTTGA-ACGCCCCGCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGCCAAAACTC
droTak1 scf7180000415104:57063-57250 + CT-A-------------------------------------AAACAAAAA-ATAA-----CCAAAAACACAGATCATACC----------AA-------------------------------------------CTCTAAG-----TTAATAAATT-TGTTCTTTATTTTTATTTTAAGA-GCAGAAATGCAAAAATG-------------------------------------------------TTTGTAGAACTATTATT-AAT--CAATTTATTTAA-CCATCCCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGTGGCCAGAACTC
droEug1 scf7180000409463:2189443-2189520 - AA-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--ACTT--GTA--TTT-CCGCTCCACAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGCCAGAACTC
dm3 chr2L:6924682-6924734 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCGAAATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTC
droSim2 2l:6691976-6692174 + G-C------------------------------------TTAAATACAAAAGTGC------------------------TTTTTGTAACAAAACCTATTGAGTATA----------------------ATGTCCACTTAAAAACGCTCTAAAGAATA-CGCTTACAAT--TAATTTTGCAA-GAATATACGTTAACATTTTTGT--------------------------------------C----------AAAATCACTAAT-AAA--CA--TTA----A-TT-ATCCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAGAACTC
droSec2 scaffold_3:2457332-2457531 + G-C------------------------------------TTAAATACCAAAGTGC------------------------TTTTTGTAACAAAACCTATTGAGTATA----------------------ATGTCCACTTAAAAACGCTCTAAAGAATA-CACGGACAAT--TAATTTCGCAATGAAAATACGTTAACCTTTTTTT--------------------------------------C----------AAAATCACTAAT-AAA--CA--TTA----A-TT-ATCCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTC
droYak3 2L:5985788-5986037 - AA-A------------ATTGCGCTAA---TTCTAGAGGTGTTAATACAAAAGTGT-----TTACAAATGCAGAT-ATATC----------AAATCTATTGAAAATA----------------------TTTTCCACTTAAGACCGCATACAAGAAAAAC----ATAAT--TAA-----------ATGAACGTTAAAATTTTATTTAGTAGTTATTTTTAAA-------------ATTTCTTGTAAGTGTTCGTAACACCATTAAT-AAT--CA--TTA----A-TT-ATCTCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTC
droEre2 scaffold_4929:15838833-15838885 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TATTTAAGTCGTTAAAATTGCGTTCA---TATTAAGTGAAACTTGAATGAAAAGT-----TCAAAAAAACAAAT-ATATATTTTAATAAATCAACTAGTGAGTAAATTATCAAATATAATTTAAAATTATGCCTATACTAAAATGTAC-----AATA-TGCATATATA--AAACTATGCTT-GAATATGTTTT----------------------------------------------------------------------AA-TATAAGT--TTG--TGT-ATGTTTTGCAGGTGGAAATTAAGAAAGCGGAGCCACGTGATGGTTCCGGAGGACAGAACTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGACA......2414.004002000000000000002000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GGAAATTAAGAAAGCGGA..............................1814.004000100000000001000000000000000001000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GGAAATTAAGAAAGCGGAG.............................1913.003000000002100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGACA......2113.003001000000000000000000000000000000000000000000000000000000002000
.........................................................................................................................................................................................................................................................................................................GGAAATTAAGAAAGCGGAGC............................2013.003001100000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGAC.......2012.002000000001000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GATGGTTCCGGAGGACAGAA...2012.002000000000000100000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................CACGTGATGGTTCCGGAGGACAGA....2412.002000000000000000000000000000000000100000000000000000000000000010
......................................................................................................................................................................................................................................................................................................GGTGGAAATTAAGAAAGCGGA..............................2111.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTCCGGAGGACAGAACTC1811.001000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAGAAAGCGGAGCCACGTGATGG..................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGACAGAA...2411.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGAC.......2311.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AATTAAGAAAGCGGAGCC...........................1811.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAG..........2011.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GT--TTG--TGT-ATGTTTTG.....................................................1611.001000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................AGGTGGAAATTAAGAAAGCGGAGCC...........................2511.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGACAGAA...2711.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................GTGATGGTTCCGGAGGACAGAA...2211.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGACAGAAC..2811.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GGAAATTAAGAAAGCGGAGCCACG........................2411.001000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AATTAAGAAAGCGGAGCCACG........................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AATTAAGAAAGCGGAGCCACGTGATGG..................2711.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................GATGGTTCCGGAGGACAGAACT.2211.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AAATTAAGAAAGCGGAGCC...........................1911.001000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTTGCAGGTGGAAATTAAGAAAGCGGA..............................2711.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................AGGTGGAAATTAAGAAAGCGGA..............................2211.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................AAAGCGGAGCCACGTGATGG..................2011.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................GTTCCGGAGGACAGAACT.1811.001000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TATAAGT--TTG--TGT-ATGTTTT......................................................2011.001000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................GGTTCCGGAGGACAGAACT.1911.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ACGTGATGGTTCCGGAGGACAG.....2211.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................GCCACGTGATGGTTCCGGAGGAG.......2311.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................CACGTGATGGTTCCGGAGGACA......2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GCCACGTGATGGTTCCGGA...........1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
G-T------------------------------------CTTAATATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-GTGTTTTGCAGGTGGAGATTAAGAAAGCTGAGCCACGCGATGGTTCCGGTGGACAGAACTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................GGAGATTAAGAAAGCTGAGC............................2013.003000003
................................................................................................................................................................................................................................................................................................................................GCGATGGTTCCGGTGGAC.......1812.002000020
..............................................................................................................................................................................................................................................................................................................................ACGCGATGGTTCCGGTGGAC.......2012.002010001
..........................................AATATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-GTGTTTT......................................................1811.001000010
...................................................................................................................................................................................................................................................................................................................AAAGCTGAGCCACGCGATG...................1911.001000001
.......................................CTTAATATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT-GTGT.........................................................1811.001001000
....................................................................................................................................................................................................................................................................................................................AAGCTGAGCCACGCGATGGTTCCGGT...........2611.001100000
.............................................................................................................................................................................................................................................................................................................ATTAAGAAAGCTGAGCCACGCGATG...................2511.001100000
.................................................................................................................................................................................................................................................................................................................................CGATGGTTCCGGTGGACA......1811.001010000
droGri2
TA-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATT----------G--TGTGTGTTTTTGCAGGTGGAAATTAAGAAGGCGGAGCCACGCGACGGTTCAGGTGGGCAGAACTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................CACGCGACGGTTCAGGTGGGCA......2212.00211
......................................................................................................................................................................................................................................................................................................................GCGGAGCCACGCGACGGTTCAGGTGG.........2611.00110
............................................................................................................................................................................................................................................................................................................................CCACGCGACGGTTCAGGTG..........1911.00110
..................................................................................................................................................................................................................................................................................................................................GACGGTTCAGGTGGGCAG.....1811.00110
......................................................................................................................................................................................................................................................................................................GGTGGAAATTAAGAAGGCGGA..............................2111.00101
.................................................................................................................................................................................................................................................................................................................AGAAGGCGGAGCCACGCG......................1811.00110
...................................................................................................................................................................................................................................................................................................................................ACGGTTCAGGTGGGCAGAACT.2111.00110
..............................................................................................................................................................................................................................................................................................................................ACGCGACGGTTCAGGTGGGCA......2111.00110
..................................................................................................................................................................................................................................................................................................................................GACGGTTCAGGTGGGCAGAACT.2211.00110
................................................................................................................................................................................................................................................................................................................................GCGACGGTTCAGGTGGGCA......1911.00110
droWil2
TT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCT--ACTT--TTTTCTTT-GTAATTTTCAGGTGGAAATTAAGAAAGCCGAACCCAGGGATGGCTCTGGTGGTCAAAACTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................AGGGATGGCTCTGGTGGT........1812.00202000
.....................................................................................................................................................................................................................................................................................................................AGCCGAACCCAGGGATGGCTCTGGT...........2512.00200020
.............................................................................................................................................................................................................................................................................................................ATTAAGAAAGCCGAACCCAG........................2011.00100010
........................................................................................................................................................................................................................................................................................................................CGAACCCAGGGATGGCTCT..............1911.00100100
..........................................................................................................................................................................................................................................................................................................................AACCCAGGGATGGCTCTGGT...........2011.00100010
.....................................................................................................................................................................................................................................................................................................................AGCCGAACCCAGGGATGGCTCTGGTG..........2611.00100100
......................................................................................................................................................................................................................................................................................................GGTGGAAATTAAGAAAGC.................................1811.00100010
......................................................................................................................................................................................................................................................................................................GGTGGAAATTAAGAAAGCC................................1911.00100010
.................................................................................................................................................................................................................................................................................................................AGAAAGCCGAACCCAGGGATGG..................2211.00100010
.............................................................................................................................................................................................................................................................................................................ATTAAGAAAGCCGAACCCAGG.......................2111.00100010
....................................................................................................................................................................................................................................................................................................................AAGCCGAACCCAGGGATG...................1811.00100100
dp5
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGGTGGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGACAGAACTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................CGTGACGGATCTGGCGGACAGA....2213.0030000000003
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGACGGATCTGGC...........2212.0020200000000
..................................................................................................................................................................................................................................................................................................................................GACGGATCTGGCGGACAGA....1912.0020200000000
................................................................................................................................................................................................................................................................................................................................GTGACGGATCTGGCGGACAGA....2112.0020000000002
..............................................................................................................................................................................................................................................................................................................TCAAGAAGGCCGAGCCTCGTGACGG..................2511.0010100000000
.................................................................................................................................................................................................................................................................................................................AGAAGGCCGAGCCTCGTGACGG..................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGACGGATCTGGCGGACA......2711.0010100000000
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGACGGATCTG.............2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................ACGGATCTGGCGGACAGAACTC2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................CTCGTGACGGATCTGGCGGACAGAACTC2811.0010100000000
......................................................................................................................................................................................................................................................................................................GGTGGAGATCAAGAAGGC.................................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................CGTGACGGATCTGGCGGACA......2011.0010000010000
...............................................................................................................................................................................................................................................................................................................................CGTGACGGATCTGGC...........1511.0010000000001
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGACGGATCTGGCGG.........2211.0010100000000
................................................................................................................................................................................................................................................................................................................................GTGACGGATCTGGCGGACAGAA...2211.0010000000001
...................................................................................................................................................................................................................................................................................................................................ACGGATCTGGCGGACAGAACT.2111.0010000100000
.................................................................................................................................................................................................................................................................................................................AGAAGGCCGAGCCTCGTGAC....................2011.0010001000000
.......................................................................................................................................................................................................................................................................................................GTGGAGATCAAGAAGGCCGAGCCTCG........................2611.0010100000000
...............................................................................................................................................................................................................................................................................................................................CGTGACGGATCTGGCGGACAGAAC..2411.0010000000010
............................................................................................................................................................................................................................................................................................................................CCTCGTGACGGATCTGGCGT.........2011.0010100000000
................................................................................................................................................................................................................................................................................................................................GTGACGGATCTGGCGGACA......1911.0010000000001
droPer2
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGGTGGAGATCAAAAAGGCCGAGCCTCGTGACGGATCTGGCGGACAGAACTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................GATCAAAAAGGCCGAGCCTCGTGACGG..................2716.006600000
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGACGGATCT..............1914.004400000
.....................................................................................................................................................................................................................................................................................................................GGCCGAGCCTCGTGACGG..................1812.002200000
...................................................................................................................................................................................................................................................................................................................................ACGGATCTGGCGGACAGAACT.2112.002200000
............................................................................................................................................................................................................................................................................................................GATCAAAAAGGCCGAGCCTCGTGACGGA.................2812.002200000
..............................................................................................................................................................................................................................................................................................................................TCGTGACGGATCTGGCGGACA......2112.002200000
................................................................................................................................................................................................................................................................................................................................GTGACGGATCTGGCGGACA......1912.002000002
...................................................................................................................................................................................................................................................................................................................................ACGGATCTGGCGGACAGA....1811.001100000
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGACGGATCTGGC...........2211.001001000
...................................................................................................................................................................................................................................................................................................................AAGGCCGAGCCTCGTGACGG..................2011.001100000
...............................................................................................................................................................................................................................................................................................................................CGTGACGGATCTGGCGGAC.......1911.001010000
...........................................................................................................................................................................................................................................................................................................................GCCTCGTGACGGATCTGGCGGACA......2411.001010000
............................................................................................................................................................................................................................................................................................................................CCTCGTGACGGATCTGGCGG.........2011.001001000
...........................................................................................................................................................................................................................................................................................................................GCCTCGTGACGGATCTGGCGGACC......2411.001001000
...............................................................................................................................................................................................................................................................................................................................CGTGACGGATCTGGCGGACAG.....2111.001100000
..................................................................................................................................................................................................................................................................................................................................GACGGATCTGGCGGACAGAACTC2311.001100000
...........................................................................................................................................................................................................................................................................................................................GCCTCGTGACGGATCTGGC...........1911.001100000
.........................................................................................................................................................................................................................................................................................................GGAGATCAAAAAGGCCGAGCCTCGTGAC....................2811.001100000
............................................................................................................................................................................................................................................................................................................................CCTCGTGACGGATCTGGCGGACAGAACTC2911.001100000
............................................................................................................................................................................................................................................................................................................GATCAAAAAGGCCGAGCCTCGTGAC....................2511.001100000
droAna3
G-T------------------------------------CTGA--------GTGT------------------------ATTTTGAATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------A--TGTGTTATTTCGCAGGTCGAGATCAAGAAGGCCGAGCCTCGCGATGGATCTGGCGGCCAGAACTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................CGAGATCAAGAAGGCCGAGCCTCGC.......................2512.002200000
...........................................................................................................................................................................................................................................................................................................................GCCTCGCGATGGATCTGG............1812.002200000
...............................................................................................................................................................................................................................................................................................................................CGCGATGGATCTGGCGGCCAGAAC..2411.001100000
................................................................................................................................................................................................................................................................................................................................GCGATGGATCTGGCGGCCA......1911.001010000
...........................................................................................................................................................................................................................................................................................................................GCCTCGCGATGGATCTGGCGGCCA......2411.001000001
..................................................................................................................................................................................................................................................................................................................................GATGGATCTGGCGGCCAGAACTC2311.001010000
...........................................................................................................................................................................................................................................................................................................................GCCTCGCGATGGATCTGGC...........1911.001010000
...............................................................................................................................................................................................................................................................................................................................CGCGATGGATCTGGCGGC........1811.001010000
...........................................................................................................................................................................................................................................................................................................................GCCTCGCGATGGATCTGGCGGC........2211.001100000
...................................................................................................................................................................................................................................................................................................................AAGGCCGAGCCTCGCGATGGATCTG.............2511.001000001
...............................................................................................................................................................................................................................................................................................................................CGCGATGGATCTGGCGGCCAGAACT.2511.001000010
.......................................................................................................................................................................................................................................................................................................GTCGAGATCAAGAAGGCCGAGCCTCGC.......................2711.001100000
..........................................................................................................................................................................................................................................................................................................................AGCCTCGCGATGGATCTGGCGGCCAG.....2611.001100000
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGCGAT....................2211.001000100
..................................................................................................................................................................................................................................................................................................................................GATGGATCTGGCGGCCAGA....1911.001010000
....................................................................................................................................................................................................................................................................................................................AGGCCGAGCCTCGCGATGGATC...............2211.001000010
.........................................................................................................................................................................................................................................................................................................................GAGCCTCGCGATGGATCTGGCGGC........2411.001000001
......................................................................................................................................................................................................................................................................................................GGTCGAGATCAAGAAGGCCGAGC............................2311.001100000
.......................................................................................................................................................................................................................................................................................................GTCGAGATCAAGAAGGCCGAGCCT..........................2411.001100000
...............................................................................................................................................................................................................................................................................................................................CGCGATGGATCTGGCGGCCAGA....2211.001100000
....................................................................................................................................................................................................................................................................................................................AGGCCGAGCCTCGCGATGGAT................2111.001000100
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGCGATG...................2311.001000010
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGCGATGGATCT..............2711.001100000
......................................................................................................................................................................................................................................................................................................GGTCGAGATCAAGAAGGCCG...............................2011.001000100
.....................................................................................................................................................................................................................................................................................................................GGCCGAGCCTCGCGATGGATCTGGC...........2511.001010000
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGCGATGGATCTGGC...........2411.001000010
.............................................................................................................................................................................................................................................................................................................................CTCGCGATGGATCTGGCGGCCAGAACT.2711.001010000
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCT..........................1611.001000100
..........................................................................................................................................................................................................................................................................................................GAGATCAAGAAGGCCGAGCCT..........................2111.001100000
.............................................................................................................................................................................................................................................................................................................................CTCGCGATGGATCTGGCGGCCAGAAC..2611.001100000
.......................................................................................................................................................................................................................................................................................................................CCGAGCCTCGCGATGGATCTGGCGGCC.......2711.001000010
......................................................................................................................................................................................................................................................................................................GGTCGAGATCAAGAAGGCC................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................CCGAGCCTCGCGATGGATCTGGCGG.........2511.001100000
..................................................................................................................................................................................................................................................................................................................................GATGGATCTGGCGGCCAA.....1820.501100000
droBip1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAGAACTCSizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGACAGGTTGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGGCAGAACTCSizeHit CountTotal NormTotal
No Reads
droFic1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGTGGCCAGAACTCSizeHit CountTotal NormTotal
No Reads
droEle1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGTGGTCAGAACTCSizeHit CountTotal NormTotal
No Reads
droRho1
A-TTCAATTTCTTAAAACTCAATACCTTTTTTTAAATAAAGTTAAGATGAAATAATGAAATAAAAAATATAGATCCTTTA----------CT-------------------------------------------TTTTAAG-----TT--------------------------------------------------TACTTTAGTTTTAATTTGAAAAACGAATTTATTATATATAAAGC----------AAAAATTCTAAT-CAC--CA--TTGTTTAT-CCGCTCCTCAGGTCGAGATCAAGAAGGCCGAGCCTCGCGACGGATCTGGCGGCCAGAACTCSizeHit CountTotal NormTotal
No Reads
droBia1
TT-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-TAC--CA--ATATTTGA-ACGCCCCGCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGCCAAAACTCSizeHit CountTotal NormTotal
No Reads
droTak1
CT-A-------------------------------------AAACAAAAA-ATAA-----CCAAAAACACAGATCATACC----------AA-------------------------------------------CTCTAAG-----TTAATAAATT-TGTTCTTTATTTTTATTTTAAGA-GCAGAAATGCAAAAATG-------------------------------------------------TTTGTAGAACTATTATT-AAT--CAATTTATTTAA-CCATCCCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGTGGCCAGAACTCSizeHit CountTotal NormTotal
No Reads
droEug1
AA-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTA--ACTT--GTA--TTT-CCGCTCCACAGGTCGAGATCAAGAAGGCCGAGCCTCGTGACGGATCTGGCGGCCAGAACTCSizeHit CountTotal NormTotal
No Reads
dm3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCGAAATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..............................................................................................................................................................................................................................................................................................................................TCGTGATGGATCTGGCGGCCAAAACT.2613.0030000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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..............................................................................................................................................................................................................................................................................................................................TCGTGATGGATCTGGCGGCC.......2012.0020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................TCAAGAAGGCCGAGCCTCGTGATG...................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGCG..........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................AAGGCCGAGCCTCGTGATGG..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................GGTCGAAATCAAGAAGGCC................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AGAAGGCCGAGCCTCGTGATGG..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
............................................................................................................................................................................................................................................................................................................................CCTCGTGATGGATCTGGCGGCCA......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AAGGCCGAGCCTCGTGATGGAT................2211.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CCGAGCCTCGTGATGGATC...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCCAAAAC..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AGAAGGCCGAGCCTCGTGATGGAT................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCG..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGTGA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CCGAGCCTCGTGATGGATCTGGCGGCC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGCGGCC.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGG.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GGCCGAGCCTCGTGATGG..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GAGCCTCGTGATGGATCTGGCGGCC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AAGGCCGAGCCTCGTGATG...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGTGATGGATCT..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CAGGTCGAAATCAAGAAGGC.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GCCTCGTGATGGATCTGGCGGCCT......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................AATCAAGAAGGCCGAGCCTCGTGATGGA.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TCAAGAAGGCCGAGCCTCGTGATGGAT................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGATGGATCTT.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGA.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................................................................................................................................................................................................GTGATGGATCTGGCGGCCAAAAA..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GTGATGGATCTGGCGGC........1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GGCCGAGCCTCGTGATGGATCTGGCGG.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GCCTCGTGATGGATCTGGCGGCCAAAAC..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................ATCAAGAAGGCCGAGCCT..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGCCAAAACT.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................TGATGGATCTGGCGGCCAAAAC..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TCGTGATGGATCTGGCGGC........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGCGGCCAAC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGCCAAA....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GGTCGAAATCAAGAAGGCCGAGCCT..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
G-C------------------------------------TTAAATACAAAAGTGC------------------------TTTTTGTAACAAAACCTATTGAGTATA----------------------ATGTCCACTTAAAAACGCTCTAAAGAATA-CGCTTACAAT--TAATTTTGCAA-GAATATACGTTAACATTTTTGT--------------------------------------C----------AAAATCACTAAT-AAA--CA--TTA----A-TT-ATCCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAGAACTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGC........1814.00402200000000000000
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCC.......1912.00201010000000000000
..................................................................................................................................................................................................................................................................................................................................GATGGATCTGGCGGCCAGAACTC2312.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGCC.......2112.00211000000000000000
....................................................................................................................................................................................................................................................................................................................AGGCCGAGCCTCGTGATGGATCTGGC...........2611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................TGATGGATCTGGCGGCCA......1811.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................GATGGATCTGGCGGCCAGAACT.2211.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGCG..........2111.00100000000001000000
..................................................................................................................................................................................................................................................................................................................GAAGGCCGAGCCTCGTGATGGATCT..............2511.00100000000000100000
...................................................................................................................................................................ACAAT--TAATTTTGCAA-GA.................................................................................................................................................................1811.00100010000000000000
.......................................................................................................................................................................................................................................................................................................GTCGAGATCAAGAAGGCCGAGCCTCG........................2611.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................ATGGATCTGGCGGCCAGAACT.2111.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................GCCTCGTGATGGATCTGGCG..........2011.00100000000001000000
................................................................................................................................................................................................................................................................................................................................GTGATGGATCTGGCGGCCA......1911.00110000000000000000
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGATCTG.............2211.00101000000000000000
............................................................................................................................................AAACGCTCTAAAGAATA-CGCTTACA...................................................................................................................................................................................2511.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGCGGC........2311.00101000000000000000
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGTGATGGAT................2511.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGC........2011.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................ATGGATCTGGCGGCCAGAACTC2211.00100001000000000000
..............................................................................................................................................................................................................................................................................................................TCAAGAAGGCCGAGCCTCGTGATGG..................2511.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................CCGAGCCTCGTGATGGATCTGGCGGCC.......2711.00100100000000000000
........................................................................................................................................................................................................................................................................................................TCGAGATCAAGAAGC..................................15200.05100000000010000000
droSec2
G-C------------------------------------TTAAATACCAAAGTGC------------------------TTTTTGTAACAAAACCTATTGAGTATA----------------------ATGTCCACTTAAAAACGCTCTAAAGAATA-CACGGACAAT--TAATTTCGCAATGAAAATACGTTAACCTTTTTTT--------------------------------------C----------AAAATCACTAAT-AAA--CA--TTA----A-TT-ATCCCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCC.......1915.0050140
.................................................................................................................................................................................................................................................................................................................AGAAGGCCGAGCCTCGTGATGGATCT..............2613.0031110
.......................................................................................................................................................................................................................................................................................................GTCGAGATCAAGAAGGCCGAGCCTCGTG......................2813.0030120
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGTGATG...................2212.0020200
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCCAAA....2212.0020110
..........................................................................................................................................................................................................................................................................................................GAGATCAAGAAGGCCGAGCCTCGTGAT....................2711.0010010
..............................................................................................................................................................................................................................................................................................................................TCGTGATGGATCTGGCGGCC.......2011.0010001
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGC........2011.0010001
..........................................................................................................................................................................................................................................................................................................GAGATCAAGAAGGCCGAGCCTCGT.......................2411.0010100
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGC...........2011.0010010
...................................................................................................................................................................................................................................................................................................................AAGGCCGAGCCTCGTGATGGA.................2111.0010100
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGATCTGGC...........2411.0010010
.........................................................................................................................................................................................................................................................................................................CGAGATCAAGAAGGCCGAGCCTCGTG......................2611.0010010
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGCCAAAACT.2711.0010001
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGATCTGG............2311.0010010
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGTGATGG..................2311.0010010
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGTGATGGATC...............2711.0010010
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGC........1811.0010010
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGTGATGGATCT..............2711.0010100
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGATGGATCTGGC...........2211.0010100
................................................................................................................................................................................................................................................................................................................................GTGATGGATCTGGCGGCC.......1811.0010010
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGTGATG...................2311.0010010
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCCAAAA...2311.0010001
droYak3
AA-A------------ATTGCGCTAA---TTCTAGAGGTGTTAATACAAAAGTGT-----TTACAAATGCAGAT-ATATC----------AAATCTATTGAAAATA----------------------TTTTCCACTTAAGACCGCATACAAGAAAAAC----ATAAT--TAA-----------ATGAACGTTAAAATTTTATTTAGTAGTTATTTTTAAA-------------ATTTCTTGTAAGTGTTCGTAACACCATTAAT-AAT--CA--TTA----A-TT-ATCTCCAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGATGGATCTGGC...........2213.00300000120000
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCCAAAACT.2512.00200000020000
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGATCTGGC...........2412.00200000020000
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCCAAA....2212.00200000020000
...................................................................................................................................................................................................................................................................................................................................ATGGATCTGGCGGCCAAAAC..2011.00100100000000
............................................................................................................................................................................................................................................................................................................GATCAAGAAGGCCGAGCCC..........................1911.00100100000000
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCC.......1911.00110000000000
.......................................................................................................................................................................................................................................................................................................GTCGAGATCAAGAAGGCCGAGCCTC.........................2511.00100100000000
..........................................................................................................................................................................................................................................................................................................GAGATCAAGAAGGCCGAGC............................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGCCAAAA...2511.00101000000000
.................................................................................................................................................................................................................................................................................................................AGAAGGCCGAGCCTCGTGATG...................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................GGCCGAGCCTCGTGATGGATCTGGC...........2511.00100000010000
.....................................................................................................................................................................................................................................................................................................................GGCCGAGCCTCGTGATGGAT................2011.00100100000000
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCCA......2011.00101000000000
..................................................................................................................................................................................................................................................................................................................................GATGGATCTGGCGGCCAAA....1911.00100000010000
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGTGATG...................2211.00101000000000
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGTGATGGA.................2411.00100010000000
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGTGATG...................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................CTCGTGATGGATCTGGCGGC........2011.00100100000000
..................................................................................................................................................................................................................................................................................................................................GATGGATCTGGCGGCCAAAA...2011.00100000010000
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGATCT..............2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGC...........2011.00100000100000
.........................................................................................................................................................................................................................................................................................................CGAGATCAAGAAGGCCGAGCCT..........................2211.00101000000000
........................................................................................................................................................................................................................................................................................................TCGAGATCAAGAAGGCCGAGCCT..........................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................GAGATCAAGAAGGCCGAGCCC..........................2111.00100100000000
..........................................................................................................................................................................................................................................................................................................................AGCCTCGTGATGGATCTGGCGGCCA......2511.00101000000000
.............................................................................................................................................................................................................................................................................................................ATCAAGAAGGCCGAGCCTCGTGATGG..................2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................TGGATCTGGCGGCCAAAACTC2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGC........1811.00101000000000
................................................................................................................................................................................................................................................................................................................................GTGATGGATCTGGCGGCC.......1811.00101000000000
..................................................................................................................................................................................................................................................................................................................GAAGGCCGAGCCTCGTGATGGATCTGGC...........2811.00100100000000
....................................................................................................................................................................................................................................................................................................................AGGCCGAGCCTCGTGATGGATCTGGC...........2611.00100000010000
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGTG......................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGAT................1911.00100000010000
droEre2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCGAGATCAAGAAGGCCGAGCCTCGTGATGGATCTGGCGGCCAAAACTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................TCGAGATCAAGAAGGCCGAGCCTCGTGA.....................28124.002400000024
..............................................................................................................................................................................................................................................................................................................................TCGTGATGGATCTGGCGGCCAAAAC..2517.0070000007
...........................................................................................................................................................................................................................................................................................................................GCCTCGTGATGGATCTGGC...........1912.0020100010
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGATGGATCTGGC...........2212.0021100000
............................................................................................................................................................................................................................................................................................................................CCTCGTGATGGATCTGGC...........1811.0010000010
...............................................................................................................................................................................................................................................................................................................................CGTGATGGATCTGGCGGCC.......1911.0010001000
................................................................................................................................................................................................................................................................................................................AAGAAGGCCGAGCCTCGTGATGGATC...............2611.0010001000
....................................................................................................................................................................................................................................................................................................................AGGCCGAGCCTCGTGATGGATCTGGC...........2611.0010100000
.........................................................................................................................................................................................................................................................................................................CGAGATCAAGAAGGCCGAGCCTCGTG......................2611.0010000010
..................................................................................................................................................................................................................................................................................................................GAAGGCCGAGCCTCGTGATGGAT................2311.0010000100
.......................................................................................................................................................................................................................................................................................................GTCGAGATCAAGAAGGCCGAGCCT..........................2411.0010000010
................................................................................................................................................................................................................................................................................................................................GTGATGGATCTGGCGGCCAAAA...2211.0010000100
...............................................................................................................................................................................................................................................................................................................CAAGAAGGCCGAGCCTCGTGATGG..................2411.0010001000
........................................................................................................................................................................................................................................................................................................................CGAGCCTCGTGATGGATCT..............1911.0010000010
..............................................................................................................................................................................................................................................................................................................TCAAGAAGGCCGAGCCTCGTG......................2111.0010000010
..............................................................................................................................................................................................................................................................................................................................TCGTGATGGATCTGGCGGCCAAAC...2411.0010000001
......................................................................................................................................................................................................................................................................................................................GCCGAGCCTCGTGATGGA.................1811.0010000100
.......................................................................................................................................................................................................................................................................................................................CCGAGCCTCGTGATGGATCTGGC...........2311.0010000010

Generated: 05/16/2015 at 11:16 PM