ID:

dvi_11866

 Coordinate:

scaffold_12963:14501218-14501461 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-66.9 -66.7 -66.5

Flybase annnotation

exon [dvir_GLEANR_703:3]; exon [dvir_GLEANR_703:4]; CDS [Dvir\GJ21692-cds]; CDS [Dvir\GJ21692-cds]; intron [Dvir\GJ21692-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACCCAATTTGCAATCAGCCGCTGGGACGCGGCAACTCGGGTCTAATGAGGTACTAATTGCCAGAGCAAGCGGAGTTTTTTTTTTTTTTTTTTTTTTGCTAATTTATTAGTTGCTGGCTGTCAATTGGTCAGTCGCACGCTTTGATTGCGCATCTGATTTGCCGGACACTGGGCAAATGATGAGGGCCCAGCGCTCGGCAAAATACCATATTTGCCATTTGCATTGGCAGCTATGTATTGGTATAATTGTATTATTATTTAGCTGTATCTAATGTTGAATGCGTTTTTGTACAGTGCCAAAATACACGAAGAGGATTATCGGCGCGTGACACAGACGAATGTGC
**************************************************((((...(((((.((((.(((((((..................)))))))...........(((((((.((((..((..((((((.......))))))..))..))))..))))).))((((((...........)))))).)))))))))............((((((((((((((((((((.(((.((((((....)))))).))).))))))...)))))).)))))).))....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 M047
female body
 V047
embryo
 V116
male body		 M028
head
 SRR060661
160x9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060679
140x9_testes_total
 V053
head
 SRR060658
140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
..........................................................................................................................................................................................................................................................................................................AAAATACACGAAGAGGATTATCGGC..................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................AATACACGAAGAGGATTATCGGCGCGT................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GCCAAAATACACGAAGAGG.............................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................AAAATACACGAAGAGGATTATCG....................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................AATACACGAAGAGGATTATCGGC..................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................GTCAACTCGGGTCTAATGAG...................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................AAATACACGAAGAGGATTATCGGC..................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................AGTGCCAAAATACACGAAGAGGATTAT......................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................ACGCTTTGATTGCGCATCTGATT......................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGAGGATTATCGGCGCGTGACAC............ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................ACACGAAGAGGATTATCGGC..................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AGTGCGGTTTTGTAAAGTGCC.............................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................AAATACACGAAGAGGATTATCGGCGC................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................AATTGCCAGAGCAAGAGGA.............................................................................................................................................................................................................................................................................. 19 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................GCGCTCGGCGAAAGACCA........................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................ATATGCGCGTGACACAGCCGA...... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................ACGCTTTGATTGATCATC.............................................................................................................................................................................................. 18 2 12 0.17 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TCTTTTGTTATTTAGCTGTATC........................................................................... 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................TAAAGTGCCGGAATACACG.................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................GTTTATTTCGCTGTATCTAA........................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTGGGTTAAACGTTAGTCGGCGACCCTGCGCCGTTGAGCCCAGATTACTCCATGATTAACGGTCTCGTTCGCCTCAAAAAAAAAAAAAAAAAAAAAACGATTAAATAATCAACGACCGACAGTTAACCAGTCAGCGTGCGAAACTAACGCGTAGACTAAACGGCCTGTGACCCGTTTACTACTCCCGGGTCGCGAGCCGTTTTATGGTATAAACGGTAAACGTAACCGTCGATACATAACCATATTAACATAATAATAAATCGACATAGATTACAACTTACGCAAAAACATGTCACGGTTTTATGTGCTTCTCCTAATAGCCGCGCACTGTGTCTGCTTACACG
**************************************************((((...(((((.((((.(((((((..................)))))))...........(((((((.((((..((..((((((.......))))))..))..))))..))))).))((((((...........)))))).)))))))))............((((((((((((((((((((.(((.((((((....)))))).))).))))))...)))))).)))))).))....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 SRR060666
160_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106721
embryo_10-12h
 V047
embryo
 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
...............................................................................AAAAAAAAAAAAAAAAGAGGATTAAATAA............................................................................................................................................................................................................................................ 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGTCGGTACAGAACCATATTC................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AAATCGACTTAGAGTACCACT.................................................................. 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
GTAGGTTAGACGTAAGTCGGC................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCGTAACCTTAGATACATAAC........................................................................................................ 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
...............................................................................AAAAAAAAAAAAAAAAAATGATTAGTTA............................................................................................................................................................................................................................................. 28 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0
.....................................................................................................................................................................TGTGACCCCTTTACTTC.................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................CGCCAGCCGTAGTATGGTA....................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0
.................................................................................AAAAAAAAAAAAAAGAGGATTAA................................................................................................................................................................................................................................................ 23 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..........................................................................CAAAAAAAAAAAAAAAAAAAAAAC...................................................................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................AAAAAAAAAAGGATTAAATAAC........................................................................................................................................................................................................................................... 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............................................................................AAAAAAAAAAAAAAAAAAATGATTAGTTA............................................................................................................................................................................................................................................. 29 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.............................................................................AAGTAAAAAAAAAGAAAAAACGATTA................................................................................................................................................................................................................................................. 26 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:14501168-14501511 - dvi_11866 CA---CCCAATTTGCAATCAGCCGC---TGGGACGCGGCAACTCGG------------GTCTAATGAGGTACTAATTGCCAGAGCAAGCGGAGTT--TTTTTTTTTTTTTTTTTTTT-----------G---CTAATTTATTAGTTGCTG-----------------------GCTGTCAATTGGTCAGTCGCACGCT-------TTGATTGCGCATCTGAT------------T------------------------TGCC---GGAC------------ACTGGGCAAATGATGAGGGCCCAGCG----CTCGGCAAAATACCAT------AT-TTGCCATTTGCATTGGCAGCTATGTATTGG--TATAAT-TGTATTATTATTTAG-CT--------GT-----------------------------------ATCTAATGTTGAAT-----------------------GC----G---------TTTTT-----------GTACAGTGCCAAAATACACGAAGAGGATTATCGGCGCGTGACACAGACGAATGTGC
droMoj3 scaffold_6500:15460828-15461123 - CA---ACCCATTTGCGACCAGCCA------------------------------GTGGGCCTAATGAGGTACTAATTGACACAGCAAACAAAGCG--TCAGCTC--------------------GCCGCGCAATAATTTGTCAG----------------------------CTTTGATTGAT----------------------TTGCCTGTAAATCTGATTTGGT-------T------------------------GCTG---AATGCTGGCACTGGGCACTGGGCAC------AGGGCACAGTG--------GAA--ATTTAAT------AT-TTGCCAATCGTAT--------------TGGCAGTTTTTCTGTTGTATCAATTAT-CT--------GT-----------------------------------ACTCAATATTG-AT-----------------------GT----A---------TTTTT-----------GCACAGCGCCAAAATTCATGAGGAGGATTATCGGCGCGTGACCCAAACGAATGTGC
droGri2 scaffold_15252:1997445-1997781 + CA---ACCTATTTGCGATCAACCC---ATGGGGCGCAACAGCTCGA------------TTCCGCTGAGGTACTAATTGACAGAGCAAATCTAGTT---------------------------------------AATTTGTCAGTTCGTC--------------------AATGCTGTCAGTCAGTCAATCGGTCACTTATTCATTTGCTTGCATATCTGAT------------A------------------------TGCT---GGCCA------------T----TTGCT--------------GATTAAATGACA--ATGCGAT------GT-TTGGCTTATGCATTGTCACCTCTGCGTCCG-------------TTATG---CGATT-----------TTTTAATTTAATTCTCGATTTTGCCAAGCATGTTGACTTAATGCTG-AT-----------------------GC-TTTA---------TTTTT-----------GAATAGTGCCAAGATACACGAAGAGGATTATCGGCGCGTGACTCAGACAAATGTAC
droWil2 scf2_1100000004884:933167-933486 + CA---GCCCATTTGCGATCAGCC---AATGCGACGAGGCAACTCCGGCCTGGGTCTGGGACTGATGAGGTACTAATTGCCAGGTTAAATATGTAT--------------------------------------------------------AGTCGT-TCTTTTTTTTCGCACATCTTT-GTG----------------------------GAGAATC-GAATAGATCATTGGACAGAGAGTGGAGAGTGAAGAACTGAGGCA---CTGAT-----------------TTAGT--------------GATAAATTGA----A------G-------CTCGTGTAT-------------------TGACATGCAATTTGACTTATT---TGACT-----------TATTCATTTGCTTTC--------------------CTCCCTTTTCT-G-----------------------TTTT---C---------TTTCA-----------TGACAGTGGCAAGAACCACGAGGAGGACTTTCGTCGCGAAACACAGACAAACGTGC
dp5 4_group1:999616-999915 - CAACAACCGATTTGCGATCAGCCGCAAATGCGGCAAAACAGCTCCGGTCTGGGCCTGAGTCTAATGAGGTACTAATTGATAGATCAAATTTTGATCTCCCA----------------CAA---AAAC-----------------------GATCCAAAGATCATATTTAGCACATTGTTTGCA----------------------------GAG--------------------A------------------------GGCA---TCCGA-----------------TTAGC--------------GAT------------------------------------------------------TGGCTTATAATTTGAATTATTAATTTACAC--------A--------------------------------------CCAAT-------CTTTCT--CTCTCTCTCTCTCT---C---TGTTTGTCTCGTTCTGATTGCGCCC-GTTTAGTGCCAAGATGCATGAGGAGGACTATCGTCGCGAGACGCAAATAAATGTAC
droPer2 scaffold_5:4208917-4209219 + CAACAACCGATTTGCGATCAGCCGCAAATGCGGCAAAACAGCTCCGGTCTGGGCCTGAGTCTAATGAGGTACTAATTGATAGATCAGATTTTGATCTCCCA----------------CAA---AAAC-----------------------GATCCAAAGATCATATTTAGCACATTGTTTGCA----------------------------GAG--------------------A------------------------GGCA---TCCGA-----------------TTAGC--------------GAT------------------------------------------------------TGGCTTATAATTTGAATTATTTATTT--------------TACAC-------------------------------ACCA-------ATCTTTCTTTCTCTCTCTCTCTCT---C---TGTTTGTCTCGTTCTGATTGCGCCC-GTTTAGTGCCAAGATGCATGAGGAGGACTATCGTCGCGAGACGCAAATAAATGTAC
droAna3 scaffold_12916:10181471-10181759 + CA---ACCGATCTGCGATCAGCCCCAAATGCGGCACGGAAACTCCGGCCTGGGCCTGAGCCTAATGAGGTACTAATTGATAGATCAAACTGCGAT--CCAAAC----------------C---AAAC-----------------------AAGCCAA-AATCGCATTTCGCACTTTGTTAGCC---------------------------------------------------A------------------------GTCG---ATCGA-----------------TTAGC--------------GATTAATTGGCA--A------T-------ATCGTGA---------------------TGGCTGCAAGTTGGCAATATCTATTCACGA----CTATAT-----------------------------------A---CC--TCT-C----------------TTTT---CTGC---C---------GTTTT-----GGTCC-GTTTAGCGCCAAGATCCATGAGGAGGACTATCGCCGGGAGACACAGATCAACGTGC
droBip1 scf7180000396580:853800-854096 - CA---ACCGATTTGCGATCAGCCCCAAATGCGGCACGGAAACTCCGGCCTGGGCCTGAGCTTAATGAGGTACTAATTGATAGATCAAACTGCGAT--CCGATCCGA-----------CGAGCCAAAC-----------------------GAGCCAA-AATCGCAGTTCGCACTTTGTTAGCC---------------------------------------------------A------------------------GTCG---ATCGA-----------------TTAGC--------------GATTAATTGGCA--A------C-------ATCGTGA---------------------TGGCTGCAAGTTGGCAATACCTATTCACGT----CCATAT-------------------------------------------------CCTCCT------C--TCTT---TTTC---G---------TTTGT-----GGTCC-GTTTAGCGCCAAGATCCATGAGGAGGACTATCGTCGGGAGACACAGATCAACGTGC
droKik1 scf7180000302412:669056-669363 + CA---ACCGATTTGCGATCAGCCCCAACTGAGGCAGGGAAACTCGAGCCTGGGCCTGAGCCTAATGAGGTACTAATTGATAAATCCAACTGAGAGATCCGACC----------------A---AAAC-----------------------GAGCCAAAGATTCCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------GACT---GCCGA-----------------TTAGC--------------GATTAATTGGCA--A------GACGAGACATCGTGA---------------------TGGCGGACTATTGGCTTTCTTAATTCACAT--------TT------------------------------------ATATGTTTGT-AT----------ATCTCTTTCTTG---T---CTTTTTTCCCTTTC------------CATTAGCGCCAAGATCCATGAGGAGGACTATCGTCGTGAGACTCAGATCAATGTGC
droFic1 scf7180000452479:67-352 - CA---ACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCCTGGGTCTGAGTTTAATGAGGTACTAATAGATAGATCAAACCAAGAT--CCGAGCC--------------------AAC-----------------------GAGCCAAAGATCGCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------AGCTAGCGGCGT-----------------TTAGC--------------GATTAATTGGCA--A------G-------ATCGTGT---------------------TGGCTTACTGTTGGCATTATAAATTCACGA--------AT-----------------------------------AATACATAT-----C----------------------TTC---C---------TTTGT-----GGACA-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACGCAGATCAATGTGC
droEle1 scf7180000491186:1340781-1341056 + CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAACCC---------------------------------GCC-----------------------GAGCCAAAGATCGCGTTTCGCATTTGGTTTGGA---------------------------------------------------T------------------------GGCT---AGCGA-----------------TTAGC--------------GATTAATTGGCA--A------G-------ATCGTGT---------------------TGGCTTATTGTTGGCAATATCAATTTACGT--------AT-----------------------------------AATACATATCT-ATC----------------------TTC---C---------TTTGT-----GGACC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACTCAGATCAATGTGC
droRho1 scf7180000779312:333103-333388 - CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAACCCA-AT--CCGACCC--------------------AAC-----------------------GAGCCAAAGATCGCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------GGCG---AGCGA-----------------TTAGC--------------GATTAATTGGCA--A------G-------ATCGTGT---------------------TGGTTTATTGTTGGCATGATCAATTCACGT--------AT-----------------------------------AATATATATCT-ATC----------------------TTC---C---------TTTGT-----GGACC-CTTTAGCGCAAAGATCCATGAGGAGGACTATCGCCGGGAGACTCAGATTAATGTGC
droBia1 scf7180000301518:1302127-1302210 - CA---GCCGATTTGCGATCAGCCGCAAATGAGACAGGGCAACTCGAGCCCGGGCCTGAGCCTAATGAGGTACTAACAGATAGATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413920:133965-134247 - CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCCAT--CCG------------------------ACC-----------------------GATCCAAAGATCGCATTTCGCACATTGTTTGGT---------------------------------------------------C------------------------GGCA---GGCGA-----------------TTAGC--------------GATTAATTGGCA--A------T-------ATCGTGT---------------------TGGCTTACTGTTGGCAATATCAATTTACGT--------AT-----------------------------------TATATATATAT-ATC----------------------TTC---C---------TTTGT-----GGACC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACCCAGATCAATGTGC
droEug1 scf7180000409554:995136-995407 - CA---ACCGATTTGCGATCAGCCGCAAATGAGGCAAGGCAACTCGAGCTTGGGCCTGAGTCTAATGAGGTACTAATAGATAGATCAAAGCCT------------------------------------------------------------------GATCGAATTTCGCACTTTGTTTGGA---------------------------------------------------T------------------------GGCT---AACGA-----------------TTAGC--------------GATTAATTGGCG--A------A-------GTCGTGT---------------------TGCCTTACTGTTGGCCATATCAATTTACAT--------AT---TA------------------------------AATATATATAT-AT----------------ATC---CCTC---C---------TTTGT-----GAACCTTTTTAGCGCGAAGATCCACGAGGAAGACTATCGTCGGGAGACACAGATCAATGTTC
dm3 chr2L:8537007-8537280 + CA---ACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCAAT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGT---------------------------------------------------T------------------------GGCT---GGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCCATATCAATTGACAT-------TAT-----------------------------------AACCAATATCT-G-----------------------TTTT---C---------TTTGT-----GGCCC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACACAGATCAATGTGC
droSim2 2l:8254718-8254990 + dsi_16338 CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCGAT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGT---------------------------------------------------T------------------------GGCT---GGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCCATATCAATTGACAT--------AT-----------------------------------AACCAATATCT-G-----------------------CTTT---C---------TTTGT-----GGCCC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACACAGATCAATGTGC
droSec2 scaffold_3:4023878-4024150 + CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCGAT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGG---------------------------------------------------T------------------------GGCT---AGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCCATATCAATTGACAT--------AT-----------------------------------AACCAATATCT-G-----------------------CTTT---C---------TTTGC-----GGCTC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACACAGATCAATGTGC
droYak3 2L:11182857-11183138 + CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCCTGGGCCTGAGCCTAATGAGGTACTAATTGATAGATCAAATCCCGCT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------GGCT---GGCGG-----------------TTAGC--------------GAGTAATTGGCA--T------G-------CTCGTGT---------------------TCGCTTACTGTTGGCAATAACAATTGGCATATGTATATAT-----------------------------------AATCAATGTCT-A-----------------------CTTT---CT--------TTTGT-----GGCCC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGCCGCGAGACGCAGATCAATGTGC
droEre2 scaffold_4929:9131808-9132084 + CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATTAAAGCCCGAT--A--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGG---------------------------------------------------T------------------------GGCT---GGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTGCTGTTGGCAATATCAATTGGCAT----ACATAT-----------------------------------AACCAATATCT-A-----------------------CTTT---C---------TTTGT-----GGCCC-TTTTAGCGGCAAGATCCACGAGGAGGACTATCGTCGAGAGACGCAGATCAATGTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CA---CCCAATTTGCAATCAGCCGC---TGGGACGCGGCAACTCGG------------GTCTAATGAGGTACTAATTGCCAGAGCAAGCGGAGTT--TTTTTTTTTTTTTTTTTTTT-----------G---CTAATTTATTAGTTGCTG-----------------------GCTGTCAATTGGTCAGTCGCACGCT-------TTGATTGCGCATCTGAT------------T------------------------TGCC---GGAC------------ACTGGGCAAATGATGAGGGCCCAGCG----CTCGGCAAAATACCAT------AT-TTGCCATTTGCATTGGCAGCTATGTATTGG--TATAAT-TGTATTATTATTTAG-CT--------GT-----------------------------------ATCTAATGTTGAAT-----------------------GC----G---------TTTTT-----------GTACAGTGCCAAAATACACGAAGAGGATTATCGGCGCGTGACACAGACGAATGTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACACGAAGAGGATTATCGGC.....................2511.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACACGAAGAGGATTATCGGCGCGT.................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAATACACGAAGAGG..............................1911.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACACGAAGAGGATTATCG.......................2311.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACACGAAGAGGATTATCGGC.....................2311.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACACGAAGAGGATTATCGGC.....................2411.001000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCAAAATACACGAAGAGGATTAT.........................2711.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................ACGCT-------TTGATTGCGCATCTGAT------------T------------------------.................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATTATCGGCGCGTGACAC............2311.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGAAGAGGATTATCGGC.....................2011.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACACGAAGAGGATTATCGGCGC...................2611.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
CA---ACCCATTTGCGACCAGCCA------------------------------GTGGGCCTAATGAGGTACTAATTGACACAGCAAACAAAGCG--TCAGCTC--------------------GCCGCGCAATAATTTGTCAG----------------------------CTTTGATTGAT----------------------TTGCCTGTAAATCTGATTTGGT-------T------------------------GCTG---AATGCTGGCACTGGGCACTGGGCAC------AGGGCACAGTG--------GAA--ATTTAAT------AT-TTGCCAATCGTAT--------------TGGCAGTTTTTCTGTTGTATCAATTAT-CT--------GT-----------------------------------ACTCAATATTG-AT-----------------------GT----A---------TTTTT-----------GCACAGCGCCAAAATTCATGAGGAGGATTATCGGCGCGTGACCCAAACGAATGTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................A--ATTTAAT------AT-TTGCCAATCGT........................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................CAGTTTTTCTGTTGTATCAAT................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAGGAGGATTATCGGC.....................1911.001000001
...............GACCAGCCA------------------------------GTGGGCCTAATGAGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGAGGAGGATTATCGGC.....................2211.001000001
droGri2
CA---ACCTATTTGCGATCAACCC---ATGGGGCGCAACAGCTCGA------------TTCCGCTGAGGTACTAATTGACAGAGCAAATCTAGTT---------------------------------------AATTTGTCAGTTCGTC--------------------AATGCTGTCAGTCAGTCAATCGGTCACTTATTCATTTGCTTGCATATCTGAT------------A------------------------TGCT---GGCCA------------T----TTGCT--------------GATTAAATGACA--ATGCGAT------GT-TTGGCTTATGCATTGTCACCTCTGCGTCCG-------------TTATG---CGATT-----------TTTTAATTTAATTCTCGATTTTGCCAAGCATGTTGACTTAATGCTG-AT-----------------------GC-TTTA---------TTTTT-----------GAATAGTGCCAAGATACACGAAGAGGATTATCGGCGCGTGACTCAGACAAATGTACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CA---GCCCATTTGCGATCAGCC---AATGCGACGAGGCAACTCCGGCCTGGGTCTGGGACTGATGAGGTACTAATTGCCAGGTTAAATATGTAT--------------------------------------------------------AGTCGT-TCTTTTTTTTCGCACATCTTT-GTG----------------------------GAGAATC-GAATAGATCATTGGACAGAGAGTGGAGAGTGAAGAACTGAGGCA---CTGAT-----------------TTAGT--------------GATAAATTGA----A------G-------CTCGTGTAT-------------------TGACATGCAATTTGACTTATT---TGACT-----------TATTCATTTGCTTTC--------------------CTCCCTTTTCT-G-----------------------TTTT---C---------TTTCA-----------TGACAGTGGCAAGAACCACGAGGAGGACTTTCGTCGCGAAACACAGACAAACGTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAAACACAGACAAACGT..2013.00300300
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGAACCACGAGGAGGACTTTC........................2511.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACGAGGAGGACTTTCGTCG....................2411.00100100
......................................CAACTCCGGCCTGGGTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...............................GACGAGGCAACTCCGGCCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
......................C---AATGCGACGAGGCAACTCCGGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
.........................................................................................................................................................................................................................C-GAATAGATCATTGGACAGAGAGTGGAG..............................................................................................................................................................................................................................................................................................................................2811.00110000
...............GATCAGCC---AATGCGACGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
dp5
CAACAACCGATTTGCGATCAGCCGCAAATGCGGCAAAACAGCTCCGGTCTGGGCCTGAGTCTAATGAGGTACTAATTGATAGATCAAATTTTGATCTCCCA----------------CAA---AAAC-----------------------GATCCAAAGATCATATTTAGCACATTGTTTGCA----------------------------GAG--------------------A------------------------GGCA---TCCGA-----------------TTAGC--------------GAT------------------------------------------------------TGGCTTATAATTTGAATTATTAATTTACAC--------A--------------------------------------CCAAT-------CTTTCT--CTCTCTCTCTCTCT---C---TGTTTGTCTCGTTCTGATTGCGCCC-GTTTAGTGCCAAGATGCATGAGGAGGACTATCGTCGCGAGACGCAAATAAATGTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............GCGATCAGCCGCAAATGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATCGTCGCGAGACGCAAATAAAT....2711.0010000001000
...............................GGCAAAACAGCTCCGGTCTGGGCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....AACCGATTTGCGATCAGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATGCATGAGGAG...............................1811.0010100000000
droPer2
CAACAACCGATTTGCGATCAGCCGCAAATGCGGCAAAACAGCTCCGGTCTGGGCCTGAGTCTAATGAGGTACTAATTGATAGATCAGATTTTGATCTCCCA----------------CAA---AAAC-----------------------GATCCAAAGATCATATTTAGCACATTGTTTGCA----------------------------GAG--------------------A------------------------GGCA---TCCGA-----------------TTAGC--------------GAT------------------------------------------------------TGGCTTATAATTTGAATTATTTATTT--------------TACAC-------------------------------ACCA-------ATCTTTCTTTCTCTCTCTCTCTCT---C---TGTTTGTCTCGTTCTGATTGCGCCC-GTTTAGTGCCAAGATGCATGAGGAGGACTATCGTCGCGAGACGCAAATAAATGTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGAGGACTATCGTCGCGA.................2413.003300000
droAna3
CA---ACCGATCTGCGATCAGCCCCAAATGCGGCACGGAAACTCCGGCCTGGGCCTGAGCCTAATGAGGTACTAATTGATAGATCAAACTGCGAT--CCAAAC----------------C---AAAC-----------------------AAGCCAA-AATCGCATTTCGCACTTTGTTAGCC---------------------------------------------------A------------------------GTCG---ATCGA-----------------TTAGC--------------GATTAATTGGCA--A------T-------ATCGTGA---------------------TGGCTGCAAGTTGGCAATATCTATTCACGA----CTATAT-----------------------------------A---CC--TCT-C----------------TTTT---CTGC---C---------GTTTT-----GGTCC-GTTTAGCGCCAAGATCCATGAGGAGGACTATCGCCGGGAGACACAGATCAACGTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGGAGACACAGATCAACGT..2312.002000011
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGATCCATGAGGAGGA.............................2111.001001000
..............................CGGCACGGAAACTCCGGCCTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCAAGATCCATGAGGAGGACT...........................2411.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATCCATGAGGAGGACTAT.........................2411.001000010
...................................................................................................................................................................................................................................................................................................................GATTAATTGGCA--A------T-------ATCGTGA---------------------TGGCT...................................................................................................................................................................................................2611.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATCCATGAGGAGGA.............................2011.001010000
........GATCTGCGATCAGCCCCAAATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.A---ACCGATCTGCGATCAGCCCCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATGAGGAGGACTATCGCC.....................2211.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATGAGGAGGACTAT.........................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAGGAGGACTATCGCCGG...................2211.001000010
..................CAGCCCCAAATGCGGCACGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................CACGGAAACTCCGGCCTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCGGGAGACACAGATCAACGTGC2711.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCGGGAGACACAGATCAACGTG.2511.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTATCGCCGGGAGACACA...........2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCGGGAGACACAGATC.......2011.001000100
...........CTGCGATCAGCCCCAAATGCGGCACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droBip1
CA---ACCGATTTGCGATCAGCCCCAAATGCGGCACGGAAACTCCGGCCTGGGCCTGAGCTTAATGAGGTACTAATTGATAGATCAAACTGCGAT--CCGATCCGA-----------CGAGCCAAAC-----------------------GAGCCAA-AATCGCAGTTCGCACTTTGTTAGCC---------------------------------------------------A------------------------GTCG---ATCGA-----------------TTAGC--------------GATTAATTGGCA--A------C-------ATCGTGA---------------------TGGCTGCAAGTTGGCAATACCTATTCACGT----CCATAT-------------------------------------------------CCTCCT------C--TCTT---TTTC---G---------TTTGT-----GGTCC-GTTTAGCGCCAAGATCCATGAGGAGGACTATCGTCGGGAGACACAGATCAACGTGCSizeHit CountTotal NormTotal
No Reads
droKik1
CA---ACCGATTTGCGATCAGCCCCAACTGAGGCAGGGAAACTCGAGCCTGGGCCTGAGCCTAATGAGGTACTAATTGATAAATCCAACTGAGAGATCCGACC----------------A---AAAC-----------------------GAGCCAAAGATTCCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------GACT---GCCGA-----------------TTAGC--------------GATTAATTGGCA--A------GACGAGACATCGTGA---------------------TGGCGGACTATTGGCTTTCTTAATTCACAT--------TT------------------------------------ATATGTTTGT-AT----------ATCTCTTTCTTG---T---CTTTTTTCCCTTTC------------CATTAGCGCCAAGATCCATGAGGAGGACTATCGTCGTGAGACTCAGATCAATGTGCSizeHit CountTotal NormTotal
No Reads
droFic1
CA---ACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCCTGGGTCTGAGTTTAATGAGGTACTAATAGATAGATCAAACCAAGAT--CCGAGCC--------------------AAC-----------------------GAGCCAAAGATCGCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------AGCTAGCGGCGT-----------------TTAGC--------------GATTAATTGGCA--A------G-------ATCGTGT---------------------TGGCTTACTGTTGGCATTATAAATTCACGA--------AT-----------------------------------AATACATAT-----C----------------------TTC---C---------TTTGT-----GGACA-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACGCAGATCAATGTGCSizeHit CountTotal NormTotal
No Reads
droEle1
CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAACCC---------------------------------GCC-----------------------GAGCCAAAGATCGCGTTTCGCATTTGGTTTGGA---------------------------------------------------T------------------------GGCT---AGCGA-----------------TTAGC--------------GATTAATTGGCA--A------G-------ATCGTGT---------------------TGGCTTATTGTTGGCAATATCAATTTACGT--------AT-----------------------------------AATACATATCT-ATC----------------------TTC---C---------TTTGT-----GGACC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACTCAGATCAATGTGCSizeHit CountTotal NormTotal
No Reads
droRho1
CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAACCCA-AT--CCGACCC--------------------AAC-----------------------GAGCCAAAGATCGCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------GGCG---AGCGA-----------------TTAGC--------------GATTAATTGGCA--A------G-------ATCGTGT---------------------TGGTTTATTGTTGGCATGATCAATTCACGT--------AT-----------------------------------AATATATATCT-ATC----------------------TTC---C---------TTTGT-----GGACC-CTTTAGCGCAAAGATCCATGAGGAGGACTATCGCCGGGAGACTCAGATTAATGTGCSizeHit CountTotal NormTotal
No Reads
droBia1
CA---GCCGATTTGCGATCAGCCGCAAATGAGACAGGGCAACTCGAGCCCGGGCCTGAGCCTAATGAGGTACTAACAGATAGATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCCAT--CCG------------------------ACC-----------------------GATCCAAAGATCGCATTTCGCACATTGTTTGGT---------------------------------------------------C------------------------GGCA---GGCGA-----------------TTAGC--------------GATTAATTGGCA--A------T-------ATCGTGT---------------------TGGCTTACTGTTGGCAATATCAATTTACGT--------AT-----------------------------------TATATATATAT-ATC----------------------TTC---C---------TTTGT-----GGACC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACCCAGATCAATGTGCSizeHit CountTotal NormTotal
No Reads
droEug1
CA---ACCGATTTGCGATCAGCCGCAAATGAGGCAAGGCAACTCGAGCTTGGGCCTGAGTCTAATGAGGTACTAATAGATAGATCAAAGCCT------------------------------------------------------------------GATCGAATTTCGCACTTTGTTTGGA---------------------------------------------------T------------------------GGCT---AACGA-----------------TTAGC--------------GATTAATTGGCG--A------A-------GTCGTGT---------------------TGCCTTACTGTTGGCCATATCAATTTACAT--------AT---TA------------------------------AATATATATAT-AT----------------ATC---CCTC---C---------TTTGT-----GAACCTTTTTAGCGCGAAGATCCACGAGGAAGACTATCGTCGGGAGACACAGATCAATGTTCSizeHit CountTotal NormTotal
No Reads
dm3
CA---ACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCAAT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGT---------------------------------------------------T------------------------GGCT---GGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCCATATCAATTGACAT-------TAT-----------------------------------AACCAATATCT-G-----------------------TTTT---C---------TTTGT-----GGCCC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACACAGATCAATGTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGAGGACTATCGTCGGGAGACAC............2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTATCGTCGGGAGACA.............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGCCAAGATCCACGAGGAGGAC............................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATCCACGAGGAGGACT...........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................CAACTCGAGCTTGGGCCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AGAGATCGCATTTCGCACTTT....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...........................................CGAGCTTGGGCCTGAGCCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGAGGAGGACTATCGTC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGATCCACGAGGAGGA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................AGGCAGGGCAACTCGAGCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTATCGTCGGGAGACAC............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTATCGTCGGGAGACACAG..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGACAT-------TAT-----------------------------------AACCAATATCT-G-----------------------TTTT---C---------........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGAGCCTAATGAGGTACTAATAGATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AATGAGGCAGGGCAACTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CTGTTGGCCATATCAATTGACAT-------TAT-----------------------------------AAC..........................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAGGAGGACTATCGTCGGG..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AATGAGGCAGGGCAACTCGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................CTCGAGCTTGGGCCTGAGCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCAAGATCCACGAGGA................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATCCACGAGGAGA..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATCCACGAGGAGGACTATCGT......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................GCAACTCGAGCTTGGGCCTGAGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TCGAGCTTGGGCCTGAGCCTAATGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AATTGGCA--T------G-------CTCGTGT---------------------TG......................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGTCGGGAGACACAGATC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTATCGTCGGGAGAC..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCT-G-----------------------TTTT---C---------TTTGT-----GGCCC-TTTTAG..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AGGGCAACTCGAGCTTGGGCCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AGGGCAACTCGAGCTTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTATCGTCGGGAG................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...........................ATGAGGCAGGGCAACTCGAGCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................T------------------------GGCT---GGCGA-----------------TTAGC--------------GATTAATTG........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................AAATGAGGCAGGGCAACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATTTCGCACTTTGTTTGGT---------------------------------------------------T------------------------G................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................ACTCGAGCTTGGGCCTGAGCCTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................TCAGCCGCAAATGAGGCAGGGCAACTCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCCA.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCC-TTTTAGCGCCAAGATCCAC.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATCCACGAGGAGGAC............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTATCGTCGGGAGT...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGACTATCGTCGGGAGAC..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AGCCGCAAATGAGGCAGGGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................G-------CTCGTGT---------------------TGGCTTACTGTTGGC.........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTATCGTCGGGAGACACA...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAGGAGGACTATCGTCGGGAGACA.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAGCCGCAAATGAGGCAGGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
droSim2
CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCGAT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGT---------------------------------------------------T------------------------GGCT---GGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCCATATCAATTGACAT--------AT-----------------------------------AACCAATATCT-G-----------------------CTTT---C---------TTTGT-----GGCCC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACACAGATCAATGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGACTATCGTCGGGAGACACA...........2412.00200200000000000000
................................GCAGGGCAACTCGAGCTTGGGCCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................A--T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCC........................................................................................................................................................................................2612.00200200000000000000
......................................CAACTCGAGCTTGGGCCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.......................................AACTCGAGCTTGGGCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
............TGCGATCAGCCGCAAATGAGGCAGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
........................................................................................................................................................................................................................................................................................................................ATTGGCA--T------G-------CTCGTGT---------------------TG......................................................................................................................................................................................................1811.00100001000000000000
.................................................................................................................................................................................................................................................................................................TAGC--------------GATTAATTGGCA--T------G-------....................................................................................................................................................................................................................................1811.00110000000000000000
...............GATCAGCCGCAAATGAGGCAGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..................................AGGGCAACTCGAGCTTGGGCCTGAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
................................GCAGGGCAACTCGAGCTTGGGCCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
droSec2
CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATCAAATCCCGAT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGG---------------------------------------------------T------------------------GGCT---AGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTACTGTTGGCCATATCAATTGACAT--------AT-----------------------------------AACCAATATCT-G-----------------------CTTT---C---------TTTGC-----GGCTC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGTCGGGAGACACAGATCAATGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................CTCGAGCTTGGGCCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
.........ATTTGCGATCAGCCGCAAATGAGGCAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAGGAGGACTATCGTCGGGAGACA.............2711.0010100
droYak3
CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCCTGGGCCTGAGCCTAATGAGGTACTAATTGATAGATCAAATCCCGCT--C--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGA---------------------------------------------------A------------------------GGCT---GGCGG-----------------TTAGC--------------GAGTAATTGGCA--T------G-------CTCGTGT---------------------TCGCTTACTGTTGGCAATAACAATTGGCATATGTATATAT-----------------------------------AATCAATGTCT-A-----------------------CTTT---CT--------TTTGT-----GGCCC-TTTTAGCGCCAAGATCCACGAGGAGGACTATCGCCGCGAGACGCAGATCAATGTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........TTTGCGATCAGCCGCAAATGAGGCAGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
...................................GGGCAACTCGAGCCTGGGCCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................................................................................................................................................................TTGGA---------------------------------------------------A------------------------GGCT---GGCGG-----------------TTAGC--------------GA...............................................................................................................................................................................................................................................................2211.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACGAGGAGGACTATCGCC.....................2211.00100000010000
...........................ATGAGGCAGGGCAACTCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTATCGCCGCGAGACGC............2211.00100000010000
droEre2
CA---GCCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTTGGGCCTGAGCCTAATGAGGTACTAATAGATAGATTAAAGCCCGAT--A--------------------------------------------------------CAGAGATCGCATTTCGCACTTTGTTTGGG---------------------------------------------------T------------------------GGCT---GGCGA-----------------TTAGC--------------GATTAATTGGCA--T------G-------CTCGTGT---------------------TGGCTTGCTGTTGGCAATATCAATTGGCAT----ACATAT-----------------------------------AACCAATATCT-A-----------------------CTTT---C---------TTTGT-----GGCCC-TTTTAGCGGCAAGATCCACGAGGAGGACTATCGTCGAGAGACGCAGATCAATGTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTATCGTCGAGAGACGCAGA.........2311.0010000010
............................TGAGGCAGGGCAACTCGAGCTTGGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.......................................AACTCGAGCTTGGGCCTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGACGCAGATCAATGT..1811.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTATCGTCGAGAGACGC............2011.0010001000

Generated: 05/16/2015 at 10:05 PM