ID:

dvi_11861

 Coordinate:

scaffold_12963:14456233-14456435 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.2 -36.2 -36.1

Flybase annnotation

CDS [Dvir\GJ21758-cds]; CDS [Dvir\GJ21758-cds]; exon [dvir_GLEANR_709:2]; exon [dvir_GLEANR_709:1]; intron [Dvir\GJ21758-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATACGTCAGCTGGTCACACTGGAATTTGAGGTTTTCGGACATGTGCAAGGTTAAGAGTTAATTTTTATTTAGTTAAACCCCATGCCCGTCGCCCGTCGCCCGTCACCCGCCGCCTGTCGCATTTGCTATCACCACGGGCTAAAAATAAATCTTGCACAGTAGCTCGGCATTTTATGTCCTTGGCTTTGTTTCGTATATGCAGTAAGCGAAATGCAAAGTAATTATAGCAGAGAATGTTTGTGTAATCGGCAGGCTTAAATCTCACGAAAGACACGCGTGACCGTTGCACCAAAGCAGGAATC
**************************************************........((((((.......)))))).....(((..((........))..))).....((((..((.((((((((((((..(((.((((..(((((...((..((......))..)).)))))..)))).)))(((((((((((.(((...))).)))))..)))))).....)))))))).......))))))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1106729
mixed whole adult body
 M047
female body
 V116
male body		 SRR060668
160x9_males_carcasses_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR1106728
larvae
 V053
head
 SRR1106727
larvae
 SRR060672
9x160_females_carcasses_total
 SRR060664
9_males_carcasses_total
 M061
embryo
 SRR060680
 9xArg_testes_total
 M028
head
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060670
9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
...........................................GTGCAAGGTTAAGACT.................................................................................................................................................................................................................................................... 16 1 4 38.25 153 145 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTGCAAGGTTAAGACTAAAA................................................................................................................................................................................................................................................ 20 3 12 28.33 340 0 140 46 0 59 13 12 8 9 1 0 0 11 0 0 5 0 0 12 0 0 0 10 4 2 2 2 0 1 1 1 1 0 0
...........................................GTGCAAGGTTAAGACTAAA................................................................................................................................................................................................................................................. 19 2 2 10.00 20 0 1 3 0 1 3 4 3 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGTGCAAGGTTAAGACT.................................................................................................................................................................................................................................................... 17 2 6 5.33 32 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CCCGTGCAAGGTTAAGACT.................................................................................................................................................................................................................................................... 19 3 3 5.00 15 1 2 4 0 0 3 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGTGCAAGGTTAAGACTAAA................................................................................................................................................................................................................................................. 20 3 4 3.50 14 0 0 11 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTGCAAGGTTAAGACTAA.................................................................................................................................................................................................................................................. 18 2 4 3.25 13 0 2 0 0 0 1 3 3 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATACGTCAGCTGGTCACACTGGAA...................................................................................................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TCCCGTGCAAGGTTAAGA...................................................................................................................................................................................................................................................... 18 3 20 1.55 31 0 3 1 0 0 11 5 0 6 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGTGCAAGGTTAAGACTAA.................................................................................................................................................................................................................................................. 19 3 9 1.22 11 0 0 5 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................TGCAAGGTTAAGACTAAAA................................................................................................................................................................................................................................................ 19 3 20 1.10 22 0 10 8 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTTGCACCA........... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TCACGAAAGACACGCGTGAC..................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GCGTGACCGTTGCACCAAA......... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GAGGTTTTCGGACATGTGCAAGGCTTA........................................................................................................................................................................................................................................................ 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGCAGTAAGCGAAATGCAAAGT................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTCAGCTGGTCACACTGGAAT..................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................ACGAAGGACACGCGTGACCGT.................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTTGCACC............ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTCGGACATGTGCAAGGTTAAA....................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CACGCGTGACCGTTGCACCAAAGCA...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTTGC............... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTGGAATTTGAGGTTTTCGGACA..................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................ACACGCGTGACCGTTGCACC............ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAGCGAAATGCAAAGTAATTA.............................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTCGGACATGTGCAAGGCT.......................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AAGGCTTAAATCTCACGAAAGACACGCG......................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TACGTCAGCTGGTCACACTGGAATT.................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GACCGTTGCACCAAAGCA...... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTGGAATTTGAGGTTTTCGGAC...................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CGCGTGACCGTTGCACCAAAGC....... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................TGAGGGTTTCGGACATGTGCA............................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AAATCTCACGAAAGACACGCGTGACC.................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AATCTCACGAAAGACACGCGT........................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GAGGTTTTCGGACATGTGCA............................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TCACGAAAGACACGCGTGA...................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTT................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................AAGACACGCGTGACCGTTGCACC............ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTGAGGTTTTCGGACATGTGCA............................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CAGCTGGTCACACTGGAATTTGAGGT.............................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CCCGTGCAAGGTTAAGAC..................................................................................................................................................................................................................................................... 18 3 20 0.90 18 1 0 1 0 0 6 4 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1
...........................................GTGCAAGGTTAAGAC..................................................................................................................................................................................................................................................... 15 1 7 0.57 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CCGTGCAAGGTTAAGACT.................................................................................................................................................................................................................................................... 18 3 20 0.55 11 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0
.................................TTTCGGACATGTGCAAGGCTTAA....................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GATCCTGTGCAAGGTTAAGA...................................................................................................................................................................................................................................................... 20 3 6 0.33 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGCAAGGTTAAGACT.................................................................................................................................................................................................................................................... 15 1 10 0.30 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGTGCAAGGTTAAGA...................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGCAAGGTTAAGACTAAA................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CGTGACCGTGACACCTAAG........ 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........AGCTGATCACCCCGGAATT.................................................................................................................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTGCAAGGTTAAGAAT.................................................................................................................................................................................................................................................... 16 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GACACGCGTGACTTTTGC............... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGTGCAAGGTTAAGAC..................................................................................................................................................................................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CACATCGCCCGTCACCCCCC............................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......CAGCTTATCACACCGGAAT..................................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTGCAAGGTTAAGACTCAAA................................................................................................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAAAGTAATCATAGGAGAGA..................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GTCGCCCAGCGCCCGTCCCC................................................................................................................................................................................................... 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GTAAACGAAATGCTAAGT................................................................................... 18 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GAGGAGTGCGGACATGTGC................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................GTGCAAGGTTAAGCCT.................................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GATCCTGTGCAAGGTTAAG....................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTGCAAGGTTAAGATTAAAA................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ACATCGCCCGTCACCCCCC............................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TCTTTGGCTTGGTTTTGTATA......................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................GTGCAAGGTTAAGACTAAAC................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTATGCAGTCGACCAGTGTGACCTTAAACTCCAAAAGCCTGTACACGTTCCAATTCTCAATTAAAAATAAATCAATTTGGGGTACGGGCAGCGGGCAGCGGGCAGTGGGCGGCGGACAGCGTAAACGATAGTGGTGCCCGATTTTTATTTAGAACGTGTCATCGAGCCGTAAAATACAGGAACCGAAACAAAGCATATACGTCATTCGCTTTACGTTTCATTAATATCGTCTCTTACAAACACATTAGCCGTCCGAATTTAGAGTGCTTTCTGTGCGCACTGGCAACGTGGTTTCGTCCTTAG
**************************************************........((((((.......)))))).....(((..((........))..))).....((((..((.((((((((((((..(((.((((..(((((...((..((......))..)).)))))..)))).)))(((((((((((.(((...))).)))))..)))))).....)))))))).......))))))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 SRR060664
9_males_carcasses_total
 V116
male body		 SRR1106730
embryo_16-30h
 SRR060678
9x140_testes_total
 V053
head
....................................................................................................................................................................................................ATACGTCATTCGCTTTACGTT...................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................................CCGAATTTAGAGTGCTTTCT............................... 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGCGCACTGGCAACGTGGTTT......... 21 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................CGTGGTTTCGCTCTTAG 17 2 20 0.10 2 0 0 0 2 0 0
...........................................................................................................................................................................................................................................................................................CAGCGTTGTTGCGTCCTTA. 19 3 17 0.06 1 0 0 0 0 0 1
........................................................................................................GTGTGCGGCGGTCAGCGT..................................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:14456183-14456485 - dvi_11861 CATACGTCAGCTGGTCACACTGGAATTTGAGGTTTTCGGACATGTGCAAGGTTAAGAGTTAATTT-TT-------------------------------------A----TTTAGTTAAAC---CCCATGCCCGTCGCCCGTCGCCCGT--------------------CACCCGCCGC-CTGTCGCATT---------------------------------------------------------------------TGCTATCA----------CCACGGGCTAAAAATAAA-TCTTG---CACAGTAGCT----CGGCATTT---TA-----------------------TGTCCTTGGCTTTGTTTCGT----------ATATGCAGTAA--GCGAAATGCA-----AAGTAATTATAGCAGAG----A---ATGT-------------TTGTGTAATC-GGCAGGCTTAAATCTCACGAAAGACACGCGTGACCGTTGCACCAAAGCAGGAATC
droMoj3 scaffold_6500:15408443-15408746 - TATACGACAGCTGGTCACACTGGAGTTCGAAGTGTACGGACATGTACAAGGTGGAGTGCGAATCTCAT-----------------------------------------ATCTA----ATA---AAT--------------------GTTGCGAATGCGTTCGCCTTTCCAAACGCAGCCCAGTCGCTAT---------------------------------------------------------------------TGCTAT----------TGCCATGGGCTAAAAATAAA-TCTTA---TACCGTAGCT----CGGCATTT---GG----------------------ATGTCCTTGGCTTTGTTTAATGCA--------CACACAGTAA--CCGAAAGACAAAGTAA-----TTATAGC---T----GACAATGT-------------TTGTATAATC-GACAGGCTTGAATTTCACAAAAGAAACGCGCGATCGTTGCACCAAAGCAGGTATC
droGri2 scaffold_15126:1484236-1484485 + TATACGTCAGTTGATCACCCTGGAATTTGAGGTGTATGGACATGTACAAGGTGCGA------GCTGA--TTGTTTTCGCA------T------------------AAAGGA-CA-----------CA--------------------AA-------------------------------------------------------A-AGC---------------------------------------------------GCCAG--------GG--TCATATGCTAAAAATATA-TCATG---CAACATGGCT----C---------------G-G-CCTT---------AGATGTCCTTGGTTTCAT-----ACA--------------ATTG--TTGTCATCA------AAA---------TGTGTTTTC-------TGCAT------------ATAATTTAAACAGGCTTAAACCTTACAAAGGATACGCGGGATCGCTGCGTCAAGGCAGGAATC
droWil2 scf2_1100000004945:421358-421605 + TATACGTCAATTGATTACGCTGGAATTTGAGGTGTTTGGTCATGTACAAGGTGGGCAGG---TTTTTT---------------------------------------------------------------------------------------------------------------------TCTTTTTTTTTTGAGCCACA-AGCTCAAGGCTATGAGAG-----------------------------------------------------CTAAATGCTATAAATAAT-TTTTGCCATAAAGTAGCT----CGTTACT-----------------------------TGTCCTTGGCTTTGTTTCACCTAACAAGA--------------------------------------------ACTCAT-------TTCAT------------ATAATTT-ACCAGGCCTGAATTTTACAAAAGATACTCGCGAAAGATGCACGAAACTGGGGATC
dp5 4_group3:7150163-7150497 - CATACGCCAGCTGGTGACACTGGACTTTGAGGTGTATGGACATGTACAAGGTGTGG------CCAGG--CAGGATCGGAG-------------------------CAAGGG-CA----A---------------------------------------------------------------------------------------AGCTCAAGGCTGCAGGCGCAGTGGCAGTGGTCAGTGGGAAGCGGTGGTACTCGTACCATAT----------CCACCAGCTAAAAATAGA-CCGA------AAGTAGCTGGCTGGTTACTT---GGG-GA-C-TGCCTGCCTCTGCGGCTGTCCTTGGCTTTGTTTCACGCCCCACGGCACTTTCACTAG--AATATATA-------GAATAATTGGGGA--------A------T-----CTGTA--------TTATC-GCCAGGTCTGAACCTAACGAAAGATACACGCGACCGCTGCACCAAGGCAGGCATC
droPer2 scaffold_1:8597390-8597724 - CATACGCCAGCTGGTGACACTGGACTTTGAGGTGTATGGACATGTACAAGGTGTGG------CCAGG--CAGGATCGGAG-------------------------CAAGGG-CA----A---------------------------------------------------------------------------------------AGCTCAAGGCTGCAGGCGCAGTGGCAGTGGTCAGTGGGAAGCGGTGGTACTCGTACCATAT----------CCACCAGCTAAAAATAGA-CCCA------AAGTAGCTGGCTGGTTACTT---GGG-GG-C-TGCCTGCCTCTGCGGCTGTCCTTGGCTTTGTTTCACGCCCCACGGCACTTTCACTAG--AATATATA-------GAATAATTGGGGA--------A------T-----CTGTA--------TTATC-GCCAGGTCTGAACCTAACGAAAGATACACGCGACCGCTGCACCAAGGCAGGCATC
droAna3 scaffold_12916:9831174-9831473 + CATCCGACAGCTGGTGACACTGGACTTTGAGGTCTACGGGCATGTTCAAGGTGGGG------ATT-ATGGACCAC------TG----ATCT--TGGATCCGGGATCGA---CAC----GATCGATTC--------------------AG-------------------------------------------------------G---------GT-----------------------------------------------------TTCCGTTGCAAAGATCTAAAAATAAA-ACCA------CAGTAGCT----AGTTACTTGCTAGG-GG-C-CTCC---------GCCTGTCCTTGGCTTCCTTTCACGCCTCATTCCACTTTCGCTAG--ACTATACC-------AAATAATAAG---ATAT----A------T-----CTTTA------ACCAACC-GGCAGGCCTGAATCTCACAAAAGATACCCGCGACCGCTGCACCAAGGCAGGAATC
droBip1 scf7180000396580:1198594-1198893 - CATCCGACAGCTTGTGACGCTGGACTTTGAGGTCTACGGGCATGTTCAAGGTGCGG------TTTTTTGGATAAC------TG----ATCA--TGGATACGGGATCGAGGGCCC----AAT---TTC--------------------AG-------------------------------------------------------G---------GT----------------------------------------------------TTCCCGATGCAAAGATCTAAAAATAAA-ACCA------CAGTAGCT----AGTTACTTG--CGG-GG-C-CTCC---------GCCTGTCCTTGGCTTCCTTTCACGCCTCATTCCACTTTCGCTAG--ACTATACC-------GAATAATACG---ATAT----A------T-----CTTTA------ACCAACC-GGCAGGCCTGAATCTCACGAAAGATACCCGCGACCGGTGCACCAAGGCAGGAATC
droKik1 scf7180000302643:518392-518693 + CATCCGGCTGCTGGTTACGCTGGAGTTTGAGGTCTATGGCCATGTGCAAGGTGCCAACA-GTTT-----GA------------GGAT----CAA------GGATCCTGGGGTCA----GAA---CCC--------------------AA----------------------------------------------------------------GGCAACAAGTGCA--------------------------------------------------G--AAAAGCTAAAAATATAACCCA------CAGTAGCTAGCTGGTTACTT---TGG-GT-C-CCCC--------CACTTGGCCTTGACTCGGTTTCACGCCCCATTCCACTTTCGCTAG--ACTAAATA-------ATATAATATGAGCATAT----A------T-TATTCTCTG------ATGATCC-GCCAGGCCTGAATCTCACGAAAGACACCCGGGATCGCTGCACCAAGGCGGGCATC
droFic1 scf7180000453842:913866-914160 + CATCCGGTTGTTGGTGACGCTGGACTTCGAGGTCTACGGACATGTGCAAGGTGCGG------TTAAAAGGAGATT------CAGGAT----CA-------GGAAATAAGGGCTA----GAA---ACC--------------------AG-------------------------------------------------------A-TTA---------------------------------------------------------TCTTTCATGGG--GATGGCTAAAAATAAA-CCCT------AAATAGCT----AGTTACTT---TGG-GG-G-CCCC---------ACTTGTCCTTGGCTTTCTTTCACGCCCCATTCCACATTCACTAG--ACTATATA-------AAA---------TATAT----A------T-----CTGTGGTATATCTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGTGAACGCTGCGCCAAGAAAGGAATT
droEle1 scf7180000491338:156761-157063 - CATCCGGCAGTTGGTGACGCTGGATTTTGAGGTCTATGGACATGTGCAAGGTGCGT------TTCAGGGGAGGATTGGGATTAGGAT----CA-------GGAATCGGGGGCTA----GAA---ACC--------------------CA-------------------------------------------------------AGTGC---------------------------------------------------------TCTTTCTGGTG--GATGGCTAAAAATAAA-CCCG------CAGTAGCT----GGTTACTT---TGG-GG-C-CCCC-------ACACTTGTCCTTGGCTTTGTTTCACGCCCCATTCCACACGCACTAG--ACCATATAG------AAA---------TATAT----A------T-----CTCTG--ATATCTTGACC-GACAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCGTTAAGGCGGGAATC
droRho1 scf7180000776804:50123-50418 + TATTCGGCTGTTGGTGACACTGGACTTTGAGGTCTATGGACATGTGCAAGGTGCGG------TAAAATGGAGGAT------TAGAAT----CA-------GGAATCGGGGGCTA----GAA---ATC--------------------AA-------------------------------------------------------GGTGC---------------------------------------------------------TCTTTCAGGTG--GATGGCTAAAAATAAA-CCCA------AAGTAGCT----GGTTACTT---TGG-GG-C-CCCC-------ACACCTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATTCGCTAG--ACTATATC-------GAA---------TATAT----A------T-----CTCTG--ATATCTCGATC-TGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGATGCACCAAGGCGGGAATC
droBia1 scf7180000302261:779033-779309 - TATCCGACTGTTGGTGACGCTGGACTTCGAGGTCTATGGCCATGTGCAAGGTGAGG------TT---------------------------CA-------GGACTAGAGGTCTG----GGA---ACC--------------------AG-------------------------------------------------------AAGCC---------------------------------------------------------CCTTTCGGGTG--GACGGCTAAAAATAAA-CCCT------CAGTAGCT----GGTTACTG---TGG-GG-C-GCCC---------ACCTGTCCTTGGCTTTGTTTCACGCACCATTCCACACCCGCTAG--ACAATATA-------GAA---------TATGT----A------T-----CTCTG--ACTTGTCAACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATC
droTak1 scf7180000415704:176883-177156 + TATCCGACTGCTGGTGACGCTGGACTTTGAGGTCTATGGACATGTACAAGGTGCGT------TT------------------GGGAT----CG-------GGATTTAGGAGCTA----GAA---ATC--------------------AA-------------------------------------------------------A--GC------------------------------------------------------------------------GATTTAAAAATAAA-ACCCC---C-AAGTAGCT----GGTTACTT---TGG-GGTGGCCCC---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATTCGCTAG--ACCATATA-------GAATATATAG------T----A------G-----CTCTG--ATTTATCAACC-GGCAGGCCTGAATCTCACCAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATT
droEug1 scf7180000409005:1232077-1232361 - CATCCGACTGTTGGTGACGGTGGACTTTGAGGTCTATGGACATGTACAAGGTGTGG------TTTGGTGGAAAAT------CAGGAA----AA-------GGAACTCATGGCTA----AAA---A---------------------------------------------------------------------------------------------------------------------------------------------TCTTTTACTTT--GATGGCTAAAAATAAA-CTCT------CAGTAGCT----GGTTACTT---TGG-GG-G-CCCC---------ACTTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATTCACTAG--ACTATATA-------AAA---------TATAT----A------C-----CTCTA--ATATATCAACC-GGCAGGGCTGAATCTCACCAAAGACACCCGCGACCGATGCACCAAGGCAGGAATT
dm3 chr2L:5328330-5328619 - TATCCGACTGCTGGTGACGCTGGATTTCGAGGTCTATGGACATGTACAAGGTGTGG------TTTCATGGGAAAT------AGGAAT----CG-------GGAATCAAG-----------C---ATA--------------------GC-------------------------------------------------------ATAGC---------------------------------------------------------TCTCTCGAATG--GTTGCCTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCACTAGAGACTATATA-------AAA---------CATAT----A------C-----CATTGCT-TTTTTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATC
droSim2 2l:5137272-5137561 - dsi_23138 TATCCGACTGCTGGTGACGCTGGACTTCGAGGTCTATGGACATGTACAAGGTGGGA------TTGCGAGGGGAAT------AGGAAT----AG-------GGACTCGAG-----------C---ATA--------------------AC-------------------------------------------------------ATAGC---------------------------------------------------------TCTCTCGGATG--GATGCCTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATACACTAGAGACTATATA-------AAA---------CATAT----A------C-----CTTTGCT-TCTTTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATC
droSec2 scaffold_5:3407474-3407763 - TATCCGACTGCTGGTGACGCTGGACTTCGAGGTCTATGGACATGTACAAGGTGCAA------TTTAAAGGGAAAT------AGGAAT----AG-------GGACTCGAG-----------C---ATA--------------------AC-------------------------------------------------------ATAGC---------------------------------------------------------TCTCTCGGATG--GATGCCTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCACTAGAGACTATATA-------AAA---------CATAT----A------C-----CTTTGCT-TCTTTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATC
droYak3 2L:13868698-13868996 + TATCCGACTGCTGGTGACGCTGGACTTTGAGGTCTATGGACATGTACAAGGTGCGA------CTTCAAGGGCACT------AGGAAT----CG-------GGAATCGAGGGCCA----GAC---ATA--------------------AG-------------------------------------------------------AAAGC---------------------------------------------------------TCTCTTAGATG--GATGACTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AAGTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCGCTAG--ACTATGTA-------AAATATA-----CATAT----A------C-----CTCTGCT-TTTTTCAACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATT
droEre2 scaffold_4929:5410212-5410506 - TATCCGACTGCTGGTGACGCTGGACTTTGAGGTCTATGGACATGTACAAGGTGCGA------TCTCAAGGGCAAT------AGGAAT----CG-------GGAATCGAGGGCCA----GGC---ATA--------------------AC-------------------------------------------------------ACAGC---------------------------------------------------------TCATTCAGTTG--GTTGCCTAAAAATAAA-CTTT------CAGTAGCT----AGTTACTT---TTGGGG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCGCTAG--ACTATATA-------AAA---------CAAAT----A------C-----CTCTG--CTTTTTCAACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGACGGGAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CATACGTCAGCTGGTCACACTGGAATTTGAGGTTTTCGGACATGTGCAAGGTTAAGAGTTAATTT-TT-------------------------------------A----TTTAGTTAAAC---CCCATGCCCGTCGCCCGTCGCCCGT--------------------CACCCGCCGC-CTGTCGCATT---------------------------------------------------------------------TGCTATCA----------CCACGGGCTAAAAATAAA-TCTTG---CACAGTAGCT----CGGCATTT---TA-----------------------TGTCCTTGGCTTTGTTTCGT----------ATATGCAGTAA--GCGAAATGCA-----AAGTAATTATAGCAGAG----A---ATGT-------------TTGTGTAATC-GGCAGGCTTAAATCTCACGAAAGACACGCGTGACCGTTGCACCAAAGCAGGAATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.ATACGTCAGCTGGTCACACTGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000000000000200000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTTGCACCA...........2511.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAAAGACACGCGTGAC.....................2011.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGACCGTTGCACCAAA.........1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TATGCAGTAA--GCGAAATGCA-----AAGT........................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.....GTCAGCTGGTCACACTGGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTTGCACC............2411.001001000000000000000000000000000000000000000000000000000000000000
..................................TTCGGACATGTGCAAGGTTAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCGTGACCGTTGCACCAAAGCA......2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTTGC...............2111.001001000000000000000000000000000000000000000000000000000000000000
...................CTGGAATTTGAGGTTTTCGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGCGTGACCGTTGCACC............2011.001100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AA--GCGAAATGCA-----AAGTAATTA...................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
..TACGTCAGCTGGTCACACTGGAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTTGCACCAAAGCA......1811.001000000000000000000010000000000000000000000000000000000000000000
...................CTGGAATTTGAGGTTTTCGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGACCGTTGCACCAAAGC.......2211.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTCACGAAAGACACGCGTGACC....................2611.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCACGAAAGACACGCGT........................2111.001000000000000000001000000000000000000000000000000000000000000000
............................GAGGTTTTCGGACATGTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAAAGACACGCGTGA......................1911.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACACGCGTGACCGTT.................1911.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACACGCGTGACCGTTGCACC............2311.001000000000000000000010000000000000000000000000000000000000000000
..........................TTGAGGTTTTCGGACATGTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.......CAGCTGGTCACACTGGAATTTGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
...........................................GTGCAAGGTTAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.574000000000000000000000000000000000000000000000000000000010300000
droMoj3
TATACGACAGCTGGTCACACTGGAGTTCGAAGTGTACGGACATGTACAAGGTGGAGTGCGAATCTCAT-----------------------------------------ATCTA----ATA---AAT--------------------GTTGCGAATGCGTTCGCCTTTCCAAACGCAGCCCAGTCGCTAT---------------------------------------------------------------------TGCTAT----------TGCCATGGGCTAAAAATAAA-TCTTA---TACCGTAGCT----CGGCATTT---GG----------------------ATGTCCTTGGCTTTGTTTAATGCA--------CACACAGTAA--CCGAAAGACAAAGTAA-----TTATAGC---T----GACAATGT-------------TTGTATAATC-GACAGGCTTGAATTTCACAAAAGAAACGCGCGATCGTTGCACCAAAGCAGGTATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAACGCGCGATCGTT.................1911.001000001
......ACAGCTGGTCACACTGGAGTTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................AATCTCAT-----------------------------------------ATCTA----ATA---AAT--------------------G....................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
TATACGTCAGTTGATCACCCTGGAATTTGAGGTGTATGGACATGTACAAGGTGCGA------GCTGA--TTGTTTTCGCA------T------------------AAAGGA-CA-----------CA--------------------AA-------------------------------------------------------A-AGC---------------------------------------------------GCCAG--------GG--TCATATGCTAAAAATATA-TCATG---CAACATGGCT----C---------------G-G-CCTT---------AGATGTCCTTGGTTTCAT-----ACA--------------ATTG--TTGTCATCA------AAA---------TGTGTTTTC-------TGCAT------------ATAATTTAAACAGGCTTAAACCTTACAAAGGATACGCGGGATCGCTGCGTCAAGGCAGGAATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TATACGTCAATTGATTACGCTGGAATTTGAGGTGTTTGGTCATGTACAAGGTGGGCAGG---TTTTTT---------------------------------------------------------------------------------------------------------------------TCTTTTTTTTTTGAGCCACA-AGCTCAAGGCTATGAGAG-----------------------------------------------------CTAAATGCTATAAATAAT-TTTTGCCATAAAGTAGCT----CGTTACT-----------------------------TGTCCTTGGCTTTGTTTCACCTAACAAGA--------------------------------------------ACTCAT-------TTCAT------------ATAATTT-ACCAGGCCTGAATTTTACAAAAGATACTCGCGAAAGATGCACGAAACTGGGGATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACTCGCGAAAGATGCACG............2211.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATACTCGCGAAAGATGCACG............2411.00100100
...............TACGCTGGAATTTGAGGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................CGCTGGAATTTGAGGTGTTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATACTCGCGAAAGATGCACGAA..........2611.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAAAAGATACTCGCGAAA....................2111.00101000
dp5
CATACGCCAGCTGGTGACACTGGACTTTGAGGTGTATGGACATGTACAAGGTGTGG------CCAGG--CAGGATCGGAG-------------------------CAAGGG-CA----A---------------------------------------------------------------------------------------AGCTCAAGGCTGCAGGCGCAGTGGCAGTGGTCAGTGGGAAGCGGTGGTACTCGTACCATAT----------CCACCAGCTAAAAATAGA-CCGA------AAGTAGCTGGCTGGTTACTT---GGG-GA-C-TGCCTGCCTCTGCGGCTGTCCTTGGCTTTGTTTCACGCCCCACGGCACTTTCACTAG--AATATATA-------GAATAATTGGGGA--------A------T-----CTGTA--------TTATC-GCCAGGTCTGAACCTAACGAAAGATACACGCGACCGCTGCACCAAGGCAGGCATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................TTTGAGGTGTATGGACATGTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTAACGAAAGATACACGCG.......................2211.0010000001000
.............................................................................................................................................................................................................................................................................................................................................GA-C-TGCCTGCCTCTGCGGCTG....................................................................................................................................................................2111.0010100000000
.........GCTGGTGACACTGGACTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................CTTTGAGGTGTATGGACATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................GAGGTGTATGGACATGTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................TGAGGTGTATGGACATGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
CATACGCCAGCTGGTGACACTGGACTTTGAGGTGTATGGACATGTACAAGGTGTGG------CCAGG--CAGGATCGGAG-------------------------CAAGGG-CA----A---------------------------------------------------------------------------------------AGCTCAAGGCTGCAGGCGCAGTGGCAGTGGTCAGTGGGAAGCGGTGGTACTCGTACCATAT----------CCACCAGCTAAAAATAGA-CCCA------AAGTAGCTGGCTGGTTACTT---GGG-GG-C-TGCCTGCCTCTGCGGCTGTCCTTGGCTTTGTTTCACGCCCCACGGCACTTTCACTAG--AATATATA-------GAATAATTGGGGA--------A------T-----CTGTA--------TTATC-GCCAGGTCTGAACCTAACGAAAGATACACGCGACCGCTGCACCAAGGCAGGCATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................GACTTTGAGGTGTATGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003000003
............................GAGGTGTATGGACATGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
..............................GGTGTATGGACATGTACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
..........................TTGAGGTGTATGGACATGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
...........................TGAGGTGTATGGACATGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.................CACTGGACTTTGAGGTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................GACTTTGAGGTGTATGGACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...................................................................................................................................................................................................................................................................................................................................CTT---GGG-GG-C-TGCCTGCCTCTGCGGCTG....................................................................................................................................................................2711.001010000
....CGCCAGCTGGTGACACTGGACTTTGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..........................................TGTACAAGGTGTGG------CCAGG--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACCTAACGAAAGATA.............................1911.001010000
..................ACTGGACTTTGAGGTGTATGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..........................TTGAGGTGTATGGACATGTACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATACACGCGACCGCTGCA..............2211.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACACGCGACCGCTGCACC............2111.001010000
.....................GGACTTTGAGGTGTATGGACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................TGGACTTTGAGGTGTATGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................TGGACTTTGAGGTGTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACGCGACCGCTGCACCA...........2111.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATACACGCGACCGCT.................2011.001000001
.....................GGACTTTGAGGTGTATGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
....................TGGACTTTGAGGTGTATGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droAna3
CATCCGACAGCTGGTGACACTGGACTTTGAGGTCTACGGGCATGTTCAAGGTGGGG------ATT-ATGGACCAC------TG----ATCT--TGGATCCGGGATCGA---CAC----GATCGATTC--------------------AG-------------------------------------------------------G---------GT-----------------------------------------------------TTCCGTTGCAAAGATCTAAAAATAAA-ACCA------CAGTAGCT----AGTTACTTGCTAGG-GG-C-CTCC---------GCCTGTCCTTGGCTTCCTTTCACGCCTCATTCCACTTTCGCTAG--ACTATACC-------AAATAATAAG---ATAT----A------T-----CTTTA------ACCAACC-GGCAGGCCTGAATCTCACAAAAGATACCCGCGACCGCTGCACCAAGGCAGGAATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCCGCGACCGCTGCACC............2113.003300000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGACCGCTGCACCAAGG........1911.001100000
CATCCGACAGCTGGTGACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................AGGTCTACGGGCATGTTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCGCGACCGCTGCACCA...........2111.001100000
...CCGACAGCTGGTGACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCCGCGACCGCTGCACCA...........2211.001100000
....................TGGACTTTGAGGTCTACGGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........GCTGGTGACACTGGACTTTGAGGTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGACCGCTGCACCAAGG........2011.001100000
.ATCCGACAGCTGGTGACACTGGACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGACCGCTGCACCAAG.........1811.001100000
.............GTGACACTGGACTTTGAGGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
CATCCGACAGCTTGTGACGCTGGACTTTGAGGTCTACGGGCATGTTCAAGGTGCGG------TTTTTTGGATAAC------TG----ATCA--TGGATACGGGATCGAGGGCCC----AAT---TTC--------------------AG-------------------------------------------------------G---------GT----------------------------------------------------TTCCCGATGCAAAGATCTAAAAATAAA-ACCA------CAGTAGCT----AGTTACTTG--CGG-GG-C-CTCC---------GCCTGTCCTTGGCTTCCTTTCACGCCTCATTCCACTTTCGCTAG--ACTATACC-------GAATAATACG---ATAT----A------T-----CTTTA------ACCAACC-GGCAGGCCTGAATCTCACGAAAGATACCCGCGACCGGTGCACCAAGGCAGGAATCSizeHit CountTotal NormTotal
No Reads
droKik1
CATCCGGCTGCTGGTTACGCTGGAGTTTGAGGTCTATGGCCATGTGCAAGGTGCCAACA-GTTT-----GA------------GGAT----CAA------GGATCCTGGGGTCA----GAA---CCC--------------------AA----------------------------------------------------------------GGCAACAAGTGCA--------------------------------------------------G--AAAAGCTAAAAATATAACCCA------CAGTAGCTAGCTGGTTACTT---TGG-GT-C-CCCC--------CACTTGGCCTTGACTCGGTTTCACGCCCCATTCCACTTTCGCTAG--ACTAAATA-------ATATAATATGAGCATAT----A------T-TATTCTCTG------ATGATCC-GCCAGGCCTGAATCTCACGAAAGACACCCGGGATCGCTGCACCAAGGCGGGCATCSizeHit CountTotal NormTotal
No Reads
droFic1
CATCCGGTTGTTGGTGACGCTGGACTTCGAGGTCTACGGACATGTGCAAGGTGCGG------TTAAAAGGAGATT------CAGGAT----CA-------GGAAATAAGGGCTA----GAA---ACC--------------------AG-------------------------------------------------------A-TTA---------------------------------------------------------TCTTTCATGGG--GATGGCTAAAAATAAA-CCCT------AAATAGCT----AGTTACTT---TGG-GG-G-CCCC---------ACTTGTCCTTGGCTTTCTTTCACGCCCCATTCCACATTCACTAG--ACTATATA-------AAA---------TATAT----A------T-----CTGTGGTATATCTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGTGAACGCTGCGCCAAGAAAGGAATTSizeHit CountTotal NormTotal
No Reads
droEle1
CATCCGGCAGTTGGTGACGCTGGATTTTGAGGTCTATGGACATGTGCAAGGTGCGT------TTCAGGGGAGGATTGGGATTAGGAT----CA-------GGAATCGGGGGCTA----GAA---ACC--------------------CA-------------------------------------------------------AGTGC---------------------------------------------------------TCTTTCTGGTG--GATGGCTAAAAATAAA-CCCG------CAGTAGCT----GGTTACTT---TGG-GG-C-CCCC-------ACACTTGTCCTTGGCTTTGTTTCACGCCCCATTCCACACGCACTAG--ACCATATAG------AAA---------TATAT----A------T-----CTCTG--ATATCTTGACC-GACAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCGTTAAGGCGGGAATCSizeHit CountTotal NormTotal
No Reads
droRho1
TATTCGGCTGTTGGTGACACTGGACTTTGAGGTCTATGGACATGTGCAAGGTGCGG------TAAAATGGAGGAT------TAGAAT----CA-------GGAATCGGGGGCTA----GAA---ATC--------------------AA-------------------------------------------------------GGTGC---------------------------------------------------------TCTTTCAGGTG--GATGGCTAAAAATAAA-CCCA------AAGTAGCT----GGTTACTT---TGG-GG-C-CCCC-------ACACCTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATTCGCTAG--ACTATATC-------GAA---------TATAT----A------T-----CTCTG--ATATCTCGATC-TGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGATGCACCAAGGCGGGAATCSizeHit CountTotal NormTotal
No Reads
droBia1
TATCCGACTGTTGGTGACGCTGGACTTCGAGGTCTATGGCCATGTGCAAGGTGAGG------TT---------------------------CA-------GGACTAGAGGTCTG----GGA---ACC--------------------AG-------------------------------------------------------AAGCC---------------------------------------------------------CCTTTCGGGTG--GACGGCTAAAAATAAA-CCCT------CAGTAGCT----GGTTACTG---TGG-GG-C-GCCC---------ACCTGTCCTTGGCTTTGTTTCACGCACCATTCCACACCCGCTAG--ACAATATA-------GAA---------TATGT----A------T-----CTCTG--ACTTGTCAACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATCSizeHit CountTotal NormTotal
No Reads
droTak1
TATCCGACTGCTGGTGACGCTGGACTTTGAGGTCTATGGACATGTACAAGGTGCGT------TT------------------GGGAT----CG-------GGATTTAGGAGCTA----GAA---ATC--------------------AA-------------------------------------------------------A--GC------------------------------------------------------------------------GATTTAAAAATAAA-ACCCC---C-AAGTAGCT----GGTTACTT---TGG-GGTGGCCCC---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATTCGCTAG--ACCATATA-------GAATATATAG------T----A------G-----CTCTG--ATTTATCAACC-GGCAGGCCTGAATCTCACCAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATTSizeHit CountTotal NormTotal
No Reads
droEug1
CATCCGACTGTTGGTGACGGTGGACTTTGAGGTCTATGGACATGTACAAGGTGTGG------TTTGGTGGAAAAT------CAGGAA----AA-------GGAACTCATGGCTA----AAA---A---------------------------------------------------------------------------------------------------------------------------------------------TCTTTTACTTT--GATGGCTAAAAATAAA-CTCT------CAGTAGCT----GGTTACTT---TGG-GG-G-CCCC---------ACTTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATTCACTAG--ACTATATA-------AAA---------TATAT----A------C-----CTCTA--ATATATCAACC-GGCAGGGCTGAATCTCACCAAAGACACCCGCGACCGATGCACCAAGGCAGGAATTSizeHit CountTotal NormTotal
No Reads
dm3
TATCCGACTGCTGGTGACGCTGGATTTCGAGGTCTATGGACATGTACAAGGTGTGG------TTTCATGGGAAAT------AGGAAT----CG-------GGAATCAAG-----------C---ATA--------------------GC-------------------------------------------------------ATAGC---------------------------------------------------------TCTCTCGAATG--GTTGCCTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCACTAGAGACTATATA-------AAA---------CATAT----A------C-----CATTGCT-TTTTTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............GGTGACGCTGGATTTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCTGAATCTCACGAAAGACA.............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGAATCTCACGAAA.................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TCTCGAATG--GTTGCCTAAAAATAAA-CC..............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCCGCGATCGCTGCACCAAGGCGGGA...2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACTGCTGGTGACGCTGGATTTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCGACTGCTGGTGACGCTGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AACTGTCCTTGGCTTTGTTT.....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCCGCGATCGCTGC...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACGAAAGACACCCGCGATCGCT.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGGATTTCGAGGTCTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATCGCTGCACCAAGGCG......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCCGACTGCTGGTGACGCTGGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TATGGACATGTACAAGGTGTGG------TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCCGCGATCGCTGCA..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACGAAAGACACCCGCGAT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GACTGCTGGTGACGCTGGATTTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGGATTTCGAGGTCTATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.....................GGATTTCGAGGTCTATGGACATGTACATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCTGGTGACGCTGGATTTCGAGGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCCGCGATCGCTGCACCA...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GACTGCTGGTGACGCTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATTTCGAGGTCTATGGACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCTGGTGACGCTGGATTTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCCGCGATCGCTGCA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATCCGACTGCTGGTGACGCTGGACTTCGAGGTCTATGGACATGTACAAGGTGGGA------TTGCGAGGGGAAT------AGGAAT----AG-------GGACTCGAG-----------C---ATA--------------------AC-------------------------------------------------------ATAGC---------------------------------------------------------TCTCTCGGATG--GATGCCTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATACACTAGAGACTATATA-------AAA---------CATAT----A------C-----CTTTGCT-TCTTTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....GACTGCTGGTGACGCTGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...CCGACTGCTGGTGACGCTGGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCCGCGATCGCTGCAC.............2111.00110000000000000000
droSec2
TATCCGACTGCTGGTGACGCTGGACTTCGAGGTCTATGGACATGTACAAGGTGCAA------TTTAAAGGGAAAT------AGGAAT----AG-------GGACTCGAG-----------C---ATA--------------------AC-------------------------------------------------------ATAGC---------------------------------------------------------TCTCTCGGATG--GATGCCTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCACTAGAGACTATATA-------AAA---------CATAT----A------C-----CTTTGCT-TCTTTCGACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................ACTTCGAGGTCTATGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020002
............................GAGGTCTATGGACATGTACAAGGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACACCCGCGATCGCTGCACCA...........2511.0010100
droYak3
TATCCGACTGCTGGTGACGCTGGACTTTGAGGTCTATGGACATGTACAAGGTGCGA------CTTCAAGGGCACT------AGGAAT----CG-------GGAATCGAGGGCCA----GAC---ATA--------------------AG-------------------------------------------------------AAAGC---------------------------------------------------------TCTCTTAGATG--GATGACTAAAAATAAA-CCCT------CAGTAGCT----AGTTACTT---TGG-GG-C-CCCA---------AAGTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCGCTAG--ACTATGTA-------AAATATA-----CATAT----A------C-----CTCTGCT-TTTTTCAACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................TTGAGGTCTATGGACATGTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................GCTGGACTTTGAGGTCTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAGACACCCGCGATCGCTGCACCA...........2711.00100000010000
..............TGACGCTGGACTTTGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCCGCGATCGCTGCACCA...........2311.00101000000000
...............GACGCTGGACTTTGAGGTCTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEre2
TATCCGACTGCTGGTGACGCTGGACTTTGAGGTCTATGGACATGTACAAGGTGCGA------TCTCAAGGGCAAT------AGGAAT----CG-------GGAATCGAGGGCCA----GGC---ATA--------------------AC-------------------------------------------------------ACAGC---------------------------------------------------------TCATTCAGTTG--GTTGCCTAAAAATAAA-CTTT------CAGTAGCT----AGTTACTT---TTGGGG-C-CCCA---------AACTGTCCTTGGCTTTGTTTCACGCCCCATTCCACATGCGCTAG--ACTATATA-------AAA---------CAAAT----A------C-----CTCTG--CTTTTTCAACC-GGCAGGCCTGAATCTCACGAAAGACACCCGCGATCGCTGCACCAAGACGGGAATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................CTTGGCTTTGTTTCACGCCCCATTCCAC......................................................................................................................................2811.0011000000
.......CTGCTGGTGACGCTGGACTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.ATCCGACTGCTGGTGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGAATCTCACGAAA.................................1811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACACCCGCGATCGCTGCACCAA..........2511.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCACCAAGACGGGAA..1911.0010000010
....................TGGACTTTGAGGTCTATGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.....................GGACTTTGAGGTCTATGGACATGTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCCGCGATCGCTGCACCA...........2311.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTGCACCAAGACGGGA...2011.0011000000
............GGTGACGCTGGACTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.......................ACTTTGAGGTCTATGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACACCCGCGATCGCTG................1911.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCTGAATCTCACGAAAGACA.............................2311.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGCGATCGCTGCACCA...........1911.0011000000
..............TGACGCTGGACTTTGAGGTCTATGGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACCCGCGATCGCTGCAC.............2111.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCGATCGCTGCACCAA..........1911.0011000000

Generated: 05/16/2015 at 10:02 PM