ID:

dvi_11786

 Coordinate:

scaffold_12963:14257882-14258032 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.9 -28.9 -28.8

Flybase annnotation

exon [dvir_GLEANR_722:3]; CDS [Dvir\GJ21895-cds]; intron [Dvir\GJ21895-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAAAACCATTATAATCGTATTTCGAGTAACAGTCAATTTTCAGTTAGCTTAAGAGCCTGTTACATTAATTTTTTATATTGGCTGGTCGCAGAGATCAACGTTTATTTATTTGATTTCTGTTCATATCTATATAAGCACTTGTTTTCGCTTATATTGATATACACATATATAAATTGATCGCTTTGTATTCATTTTTACAGCCGAACCTTTGCCATTAATGGATCTTTGTCGAAGGTCAATTCGACAGAAA
**************************************************.....(((.((((...(((....)))...)))).))).(((((((((((.((......)))))))))))))..(((((.((((((((..........)))))))).)))))......(((((((........)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060663
160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106718
embryo_6-8h
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060665
9_females_carcasses_total
..................................................................................................................................................................................................................TGCCATTAATGGATCTTTGTCGAAGGT.............. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
ATAAAACCATTATAGTCGTATTTCGAG................................................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAACCTTTGCCATTAATGGATCTTTGT..................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................GATATACACATATATAAATTGATCGCTGTA................................................................. 30 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.............................................TAGCTTAAGAGCCTGTTACATTAATT.................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................TATATAAATTGATCGCTTTGTAT.............................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGCCATTAATGGATCTTTGTC.................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCATTTTTACAGCCGAACCTTTGCCAT................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCTCTGTTGAAGGTCAATTGGA...... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATCTTTGTCCAAGGTCGCTT......... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................GGTCGCAGAGGTCAACTT..................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.........................................TAGTTACCTTAAGAGCCTGA.............................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................ATGGTCGCAGAGGTCAACTT..................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TATTTTGGTAATATTAGCATAAAGCTCATTGTCAGTTAAAAGTCAATCGAATTCTCGGACAATGTAATTAAAAAATATAACCGACCAGCGTCTCTAGTTGCAAATAAATAAACTAAAGACAAGTATAGATATATTCGTGAACAAAAGCGAATATAACTATATGTGTATATATTTAACTAGCGAAACATAAGTAAAAATGTCGGCTTGGAAACGGTAATTACCTAGAAACAGCTTCCAGTTAAGCTGTCTTT
**************************************************.....(((.((((...(((....)))...)))).))).(((((((((((.((......)))))))))))))..(((((.((((((((..........)))))))).)))))......(((((((........)))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M061
embryo
 SRR060682
9x140_0-2h_embryos_total
.................................................................................................................................................................................................GAAATGTCGGTGTGGAAACGGT.................................... 22 3 1 1.00 1 1 0 0
................................................................................................................................................................................................AGAAATGTCGGTGTGGAAACGG..................................... 22 3 5 0.20 1 0 1 0
....................................................................................................................................................................................................................GGAAATTAACTAGAAACAGG................... 20 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:14257832-14258082 - dvi_11786 AT-AAAAC-CATT-----------------ATAATCGTA----TT--------------------------------------TCGAGTAACAGTCA-----ATT-------TTCAGTTA---GCTTAA-----------------------------------------GAGC--------C---------------------TGTTACATTAATTTTTTATATTG---------------------------------------------------------------GCTG----------GTCGCAGAGATCAAC--GTTTATTT---------------------------------------------------------------------------------------------------------------------------------------AT-------------------TTGATTTCTGTTCATATCTA-T--ATA-----------------------------------------------------------------------------------------------------------AGCACTTGTTTTC-GCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTGATATACACATATA--------------------------------TAAATTGATCGCTTTGTA----------TT--------------------------------------------CATTTTTACAGCCGAACCTTTGCCATTAAT-G-GATC-------------TTTGTCGAAGGTCAATTCGACAGAAA
droMoj3 scaffold_6500:30124322-30124587 + AT-ATAAT-TTAA-----------------AGGGTATTTTTAACA--------------------------------------ATGAATG----------------------TTG--------ATTTAA--------------------------------------GGA------------------------------------------------------------------------------------------------GTGTACCTAAACTTTTTTTTGCCGACTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATGTATATGTA------TATATATTAATGAATTAAGATTAGTTTACATATAAT--AGA-----------------------------------------------------------------------------------------------------------GGTATTTATTTAT-G-----------------AAATAGGCAAAACAAAATTT-----------------------------------------------------------------------------------------------------------------------------GTTTTGCTATATATATATA--------------------------------TTAATTTATTAT--TATTTTCA-T-------------------------------------------------T--GCTTTACAGCTGAACCTTTGCCATTAAT-G-GATC-------------TTTGCCGACGGTCGATTCGACAGAAA
droGri2 scaffold_15126:7688177-7688394 - AA-T--TT-TAAT-----------------TTAATTTAATACTCC--------------------------------------CGAAGCCA--------TATATTT---------------------------------------------------------------------------------------------------TATATTCAAACATTCCAAATTG---------------------------------------------------------------AACT------------CGCAAAAAACAAA--TTATAC---------------------------------TTCTTC--CGTACTCGCG--------------------------------------------------------------------------------------------------------------------------------------TTCTCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACACTCAAAAAGCTTTCA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------TTTTATAATATACAAATAATTAAATTT--TCCTTACAGCTGAACCTTTGCCATTAAT-G-GATC-------------TTTGCCGAAGGTCGATTCGACAAAAA
droWil2 scf2_1100000004961:3993033-3993282 + AC-CAATTTTATA-----------------ATACCCTC------TGCAAA-------------------------------------------GGTATAAAAATGTCAGTTT----------------------------------------------------------------CTTCATC---------------------TATTACAAAAATTATTTTC------------------------------------------------------------------GTTTACTC-------TTCA---AAATTAAT--AT-TTT----TTT-------------------------CC--------------------AATAACTTTACTTATGCATTAAACTATTTTTTCGTATTAAAAATTAATATTGTGGAAAATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------CTAA----------AA-----------------------------------------------ACAAAATTCGATATGACCACT----------------------------TTGT-------------------------------------------------------------------------------------------------------------------AATGGCTCT------------------------------------------------------------------------------------C--------------TTTTACACTCGCATG-GATT-------------TTTGTCTTTCGGCATATATAATTTAA
dp5 4_group1:1874696-1874945 - AC-AAATC-TAAT-----------------ATACCCCAATACTCA------------------------------------TTTTGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------TGAAAGTGTTTTC-----------------------------ACTT----------ACATTTTTACATT---------------------------------------------------------------------A-----AAATGAAT--AT-TATTT---------------------------------------------------------------------------------------------------------------------------------------AT-------------------CTAAATATATTTCATAAATAAATG---AAATATTTAAATATTCTTAAATTAAATTCCCAC--------------------------------------------------------------------AAATTT-----------------------------------------------AATACAATATATTTAAT----------------------------TTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TGTTTTATATCTAATTATTGATCTAAAT-A-TATTTCATATATGTATATGTATA----------TAAATTAAAT
droPer2 scaffold_1977:5438-5643 + AC-ACATC-CACTTTTACCACAAATCTAATATACCCCAATACTCA------------------------------------TTTTGAGTATCGGGTATAAAAACTCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------CAAGCC---------------CC-------------AAATCTTTAAGAAAATAATTTTTGGTT--------------------CAC-------------------------------------------------------------------------------------------------------------A----------------------------------------------GC--------------------------------------------------------------------------------GGAAACGTGG-TGTTGCATAGTG---TTATACATATAAAAATGT-----------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------GTTGGTTTGCAA----------CT--------------------------------------------CATTTCCAAAGTC-------------CAAA-A-GTTC-------------TCCAC-----------CGATTGAGCT
droAna3 scaffold_13266:17874208-17874392 - CC-AAAAT-TATA-----------------ATACCCTC------TGCAAGGGTATAAAAATTAAGAATTAGT-G--------------------------------------TTA--------ACTAAG-----------------------------------------TA-------------------------------------------------------AGTTACAAAATAATGAACAAAATATACTCCAAAGAA---ACCAAC--------------------C----------------------------AAATATAT---------------------------------------------------------------------------------------------------------------------------ATATATATACACA------CA----------------------------TATA-T--ACA-----------------------------------------------------------------------------------------------------------AGGACAT---------------------------------------------------------------------ATACAT-----------------------------------------------------------------------------------------------ATACCGATATATATATATA--------------------------------TATACTTATA----------------------------------------------------------------------------------------------------------------------------------TATATATATT
droBip1 scf7180000396314:4460-4644 - CC-AAAAT-TATA-----------------ATACCCTC------TGCAAGGGTATAATTACAATAATTTCTTA-AATAGTTTAT------------AG--AAATAAT----------------------------------AGTAATTATAGCAATAATAGAAGTTTGGG------------------------------------------------------------------------------------------------ACTTTTTT----------------------------------------------------------TA-------------------------GA--------------------TTT-------------------------------------------------------------------------------------------------------------C----------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------TTTATAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATATAATATTTTATAATAGTT------------------------------TTATAATATT-------------ATCA-T-ATTC-------------TCATA-----------AGGATTGGTC
droKik1 scf7180000302621:450418-450603 + CT-AAAAT-AATA-----------------ATACCCTGGA-ATATTCAGGGATATCAATTTTTTTATTTTTTA-AATTGTTTTT------------TG----------------------------------------------------------------------------------------------------------------------------------------------------TATTATTA---------TTT------------------------------TTTTAAAT---------------TT-------------AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------TATTTTTATATTTATTTTTTTATTTATCTTA-GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------TTCTTAT--TTTTTTT-ATTTATTTTTTTTTTA---------ATTTTTAATAT-------------------------------------ATAATTAAT------------------------------------TAATTTTTGT
droFic1 scf7180000454072:3242303-3242509 + CT-GAAAT-TATA-----------------ATACCCTTTTGCTCTGCAAG-------------------------------------------GGTATAAAAATATCTAATTTCCATTTTTAGGCGGTT-----------------------------------------GA-----------ACTGAAAAATAT-----------------------------------------------------------TGCTTTGAA---ATCTCC-------------------------------------------------TTTTTTATTTTTA-------------------------TTTTTTT--C-----------------------------------------------------------------------------------------------G------CA----------------------------TTTT-CTG---TTTTCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAT-----------------------------------------------------------------------------------------------TTACATTTATATATATATATATAATTCTTCATATATATTCTG------------TTTTACTGT--T-----------------------------------------------------------------------CTTACTTT--------------------------------------------------TGCCAT
droEle1 scf7180000489282:396-669 + CT-GAAAT-TATA-----------------ATACCCTC------TGCAAGGGTATCGATGTTATCGATTTTT-G--------------------------------------TAG--------GCTTAA-----------------------------------------AA-----------ATTGACAAAAATTGAACACTTTATTGGAATGATTA-----------------------------------------------------------------ATTACCGTTTGTT----------------------------------------------------------------TTTTTTCACGTATTCGTGTTAAATAATC---------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTATGCACTTTTGTGATATTATTTTGGTATATGTAAGTATTGATGATGAATTTTCTC-----------GAATTG-----------AAAAA----AT-TTATTTTCATAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACTCTTAACCTTTAAATTCAAC-A-GAGT-------------TT--TCGAGGATTGA------ATAAA
droRho1 scf7180000778094:2397-2564 - AC-GAATA-CAAT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGGGTATAAATATTACATTTTATTTTA-----ATTGAATGTTTTTATTTTTATGCT---------------------------------------------------------------------------------------------------TATTGTTA---------TTC------------------------------TTTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTAAAAACATTTAA----T-------------------------------------------------------------------------------------------------TTTTTCGCCTTATATACCCTG---------------------------------------------------------------------------------------------------------CCATTTAC-ATT------------------GGCTATG-------TATTTATTTT
droBia1 scf7180000301787:8120-8316 + AC-TAAAT-CAAT-----------------TTGCCATTTATCGTT-----------------------------AATCCCTTTTTG---AACAAAT----------TTA----------------------------------------CGGCGAATAAAGTTCTTTCGA------------------------------------------------------------------------------------------------ACCTGCTTTTGATTT--------------------------------------------------TTA-------------------------TT--------------------AATAACT--------------------------------------------------------TCATGTTTGCAC--------ATTTGATTATTTTTTAT----TTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGAATGCTTTGACATAAGTGATCGCTTATATTGAAGTACA----------------------------------------------TCGCTTTTTA------------------------------------------------------------------------------------------------------------------------TTTCTTTACGCA
droTak1 scf7180000415417:394670-394909 - AC-GAATC-TAGT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGGGTATAAAAATCGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTACTAAGCAACT--------------------------TC-------------A----------------------------------------------------------------------------------------------------------------ATTTTACATATAAATAAA----------GC-------------------C--------------------------------------------------------------------------------------------------------CATTGTTTCGTTCATTTT----------------------------------------------------------------------------GCAT-CATATAAATCTTCAACATTTTTCATCACTTTGAATATCTTTGTCGGCAATATAAAATTCCTTTTGAAAGCCAGAAATTAGTCACAAATGGTCGTTCACGCA-----------------------------------------------------------------------------------------------------------------------------------------------AGTAAAC-A-AATT---------------------------TTTCTAGAGAAA
droEug1 scf7180000409614:9683-9936 - AC-AAATC-TAGT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGGGTATAAAAATATCAATTT----------------------------------------------------------------C---------------------------------------------------------------------------------------------------------TTCAA------------------------------------------------------------------------------------------------GAAATTTCATTATTTATTGAAATATTTTTTTA-------AACAGGTCTTGTCAAAAGTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTAACTTCAAAATAAATTGG------------------------------------------ATGCAAATAGATATGTTTCAT----------------------------TTAT-----------------------------------------------------------------------------------TTTGAAC--------------------------------TACTTTTAAAAAAATTTCGAATGTTGTATGCA-T----------------------------------------------------TGTTTAAAGCACAAACACCACCTTTGAC-ATGATT-------------TTTACAATAGGGAAATTTG-------
dm3 chr4:216412-216552 - AC-GAATG-TAGT-----------------GTACATTTTTATTTT--------------------------------------ACGAGTAACGGGTATAAACACTGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGATAT---------------AT-------------AATTCTTTTGTAAACTAAATTTTTACT--------------------GTT-------------------------------------------------------------------------------------------------------------A----------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------CGTAAAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATACTTGATTCCATTAAAAAT----------------------------------------------------------------------------------------------ATATAAGAG
droSim2 2r:2030136-2030313 - TT-AAATT-AATT-----------------------TCTGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATGATCATTGC---------------------------------------------------------------------GAAAAG--TA---C--AT-TAGTTATTTA-------------------------GA--------------------TGT-------------------------------------------------------------------------------------------------------------C----------------------------------------------GTATG---------------------------------------------------------------------------GTATTTATTAAAAAACTATAT-ATATTTTTACAAAAAA--AAACAA-----------------------------------------------------------------------------T-----------------------------------------------------------------------------TT------------------------------------CTTACC----------TT--------------------------------------------TATCTTTTAAGCTGAACCGTTGCCCCTAAT-G-GATC-------------TTTGCCGAAGAACAATTCGTCAAAAA
droSec2 scaffold_18:988534-988678 + AACGAATC-TTAT-----------------ATACCCTCTT------------------------------------------------TAACGGGTATAAAAATGAATA-------CTTT---GCTTAA-----------------------------------------AA----------------------------------------------------------------------------------------------ACCTG---------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTTAGTTATTTTATTTAATGTTCTTTCGTGTTCA--TTTATAAAATTATAATGGTTTATTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------TATTTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------GAGCACTT
droYak3 v2_chrUn_1593:775-1001 + AC-GAATC-TAGT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGAGTATAAATATTT---------------------------------------------------------------------------------------------------GAGGCAAAAAATTTCTAAATTA---------------------------------------------------------------ATTT----------AACAAAG--TG---C--CTTTAAATATTTA-------------------------AA--------------------ATTTTCT--------------------------------------------------------TGATATTTG-----------------------------------------------------------AATAACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTA-----------------------------------------------------------------------------------------------TATTTATTATTTATGTTTA--------------------------------TTTAACTAT-AT--TGCTATA--------------------------------------------------GTT--TGCTTTGGGCCAAATCTTGGCACCTAAT-T-AACT-------------TTTTGAATAAGTCCATATGA--CAGA
droEre2 scaffold_4929:21880052-21880227 - TT-AAATA-A-TT-----------------------TCTG-----------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------------------------ATAAGATCATTGT---------------------------------------------------------------------AAAAGG--TA---C--ATTTAAGCATTTA-------------------------GA--------------------GTT-------------------------------------------------------------------------------------------------------------T----------------------------------------------GTACA---------------------------------------------------------------------------GCATTTATTAAA-AATTATATTATA---TTACAAAAAACAAAACAA-----------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------T-----TTTACT----------TG--------------------------------------------TATCTTTTAAGCTGAACCTTTGCCTCTAAT-G-GATC-------------TTTGCCGAAGAACAATTCGTCAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AT-AAAAC-CATT-----------------ATAATCGTA----TT--------------------------------------TCGAGTAACAGTCA-----ATT-------TTCAGTTA---GCTTAA-----------------------------------------GAGC--------C---------------------TGTTACATTAATTTTTTATATTG---------------------------------------------------------------GCTG----------GTCGCAGAGATCAAC--GTTTATTT---------------------------------------------------------------------------------------------------------------------------------------AT-------------------TTGATTTCTGTTCATATCTA-T--ATA-----------------------------------------------------------------------------------------------------------AGCACTTGTTTTC-GCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTGATATACACATATA--------------------------------TAAATTGATCGCTTTGTA----------TT--------------------------------------------CATTTTTACAGCCGAACCTTTGCCATTAAT-G-GATC-------------TTTGTCGAAGGTCAATTCGACAGAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTAAT-G-GATC-------------TTTGTCGAAGGT..............2711.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTTGCCATTAAT-G-GATC-------------TTTGT.....................2711.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................TA---GCTTAA-----------------------------------------GAGC--------C---------------------TGTTACATTAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA--------------------------------TAAATTGATCGCTTTGTA----------T.........................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTAAT-G-GATC-------------TTTGTC....................2111.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------CATTTTTACAGCCGAACCTTTGCCAT..................................................2711.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
AT-ATAAT-TTAA-----------------AGGGTATTTTTAACA--------------------------------------ATGAATG----------------------TTG--------ATTTAA--------------------------------------GGA------------------------------------------------------------------------------------------------GTGTACCTAAACTTTTTTTTGCCGACTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATGTATATGTA------TATATATTAATGAATTAAGATTAGTTTACATATAAT--AGA-----------------------------------------------------------------------------------------------------------GGTATTTATTTAT-G-----------------AAATAGGCAAAACAAAATTT-----------------------------------------------------------------------------------------------------------------------------GTTTTGCTATATATATATA--------------------------------TTAATTTATTAT--TATTTTCA-T-------------------------------------------------T--GCTTTACAGCTGAACCTTTGCCATTAAT-G-GATC-------------TTTGCCGACGGTCGATTCGACAGAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------------------------------------------------------------------------------------------GGTATTTATTTAT-G-----------------AAATAGGC..................................................................................................................................................................................................................................................................................................................................................2431.003300000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTTACATATAAT--AGA-----------------------------------------------------------------------------------------------------------GG........................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGACGGTCGATTCGACAGAAA2511.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTACATATAAT--AGA-----------------------------------------------------------------------------------------------------------GGT.......................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------------------------------------------------------------------------------------------GGTATTTATTTAT-G-----------------AAATAGGCAAA...............................................................................................................................................................................................................................................................................................................................................2730.331100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------------------------------------------------------------------------------------------GGTATTTATTTAT-G-----------------AAATAGGCA.................................................................................................................................................................................................................................................................................................................................................2530.331100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------------------------------------------------------------------------------------------GGTATTTATTTAT-G-----------------AAATAGG...................................................................................................................................................................................................................................................................................................................................................2340.251100000
droGri2
AA-T--TT-TAAT-----------------TTAATTTAATACTCC--------------------------------------CGAAGCCA--------TATATTT---------------------------------------------------------------------------------------------------TATATTCAAACATTCCAAATTG---------------------------------------------------------------AACT------------CGCAAAAAACAAA--TTATAC---------------------------------TTCTTC--CGTACTCGCG--------------------------------------------------------------------------------------------------------------------------------------TTCTCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACACTCAAAAAGCTTTCA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------TTTTATAATATACAAATAATTAAATTT--TCCTTACAGCTGAACCTTTGCCATTAAT-G-GATC-------------TTTGCCGAAGGTCGATTCGACAAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-G-GATC-------------TTTGCCGAAGGT..............2011.00101
droWil2
AC-CAATTTTATA-----------------ATACCCTC------TGCAAA-------------------------------------------GGTATAAAAATGTCAGTTT----------------------------------------------------------------CTTCATC---------------------TATTACAAAAATTATTTTC------------------------------------------------------------------GTTTACTC-------TTCA---AAATTAAT--AT-TTT----TTT-------------------------CC--------------------AATAACTTTACTTATGCATTAAACTATTTTTTCGTATTAAAAATTAATATTGTGGAAAATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------CTAA----------AA-----------------------------------------------ACAAAATTCGATATGACCACT----------------------------TTGT-------------------------------------------------------------------------------------------------------------------AATGGCTCT------------------------------------------------------------------------------------C--------------TTTTACACTCGCATG-GATT-------------TTTGTCTTTCGGCATATATAATTTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACACTCGCATG-GATT-------------TTTGTCTT..................2611.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----------AA-----------------------------------------------ACAAAATTCGATATGACCACT----------------------------..............................................................................................................................................................................................................................................................................................2611.00101000
......TTTTATA-----------------ATACCCTC------TGCAAA-------------------------------------------GGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.07101000
......TTTTATA-----------------ATACCCTC------TGCAAA-------------------------------------------GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.06101000
dp5
AC-AAATC-TAAT-----------------ATACCCCAATACTCA------------------------------------TTTTGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------TGAAAGTGTTTTC-----------------------------ACTT----------ACATTTTTACATT---------------------------------------------------------------------A-----AAATGAAT--AT-TATTT---------------------------------------------------------------------------------------------------------------------------------------AT-------------------CTAAATATATTTCATAAATAAATG---AAATATTTAAATATTCTTAAATTAAATTCCCAC--------------------------------------------------------------------AAATTT-----------------------------------------------AATACAATATATTTAAT----------------------------TTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TGTTTTATATCTAATTATTGATCTAAAT-A-TATTTCATATATGTATATGTATA----------TAAATTAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................TTGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26316.0048033100021200
...................................................................................TTGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27315.334603520001800
...................................................................................TTGAGTATCGGGTATAAAAATAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2573.862701800001800
....................................................................................TGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2533.33100500000500
....................................................................................TGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2633.33100600000400
...................................................................................TTGAGTATCGGGTATAAAAATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2491.781601300000300
...................................................................................TTGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27131.001301300000000
....................................................................................TGAGTATCGGGTATAAAAATAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.8660500000100
.....................................................................................GAGTATCGGGTATAAAAATAATAA----------------------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310100000000
.....................................................................................GAGTATCGGGTATAAAAATAATAA----------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310100000000
...................................................................................TTGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.2010010000000
.....................................................................................GAGTATCGGGTATAAAAATAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.1310100000000
....................................................................................TGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.0810100000000
..................................................................................TTTGAGTATCGGGTATAAAAATAATAA----------------------------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28130.0810100000000
.....................................................................................GAGTATCGGGTATAAAAATAATAA----------------------------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.0710100000000
..........................................TCA------------------------------------TTTTGAGTATCGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
droPer2
AC-ACATC-CACTTTTACCACAAATCTAATATACCCCAATACTCA------------------------------------TTTTGAGTATCGGGTATAAAAACTCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------CAAGCC---------------CC-------------AAATCTTTAAGAAAATAATTTTTGGTT--------------------CAC-------------------------------------------------------------------------------------------------------------A----------------------------------------------GC--------------------------------------------------------------------------------GGAAACGTGG-TGTTGCATAGTG---TTATACATATAAAAATGT-----------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------GTTGGTTTGCAA----------CT--------------------------------------------CATTTCCAAAGTC-------------CAAA-A-GTTC-------------TCCAC-----------CGATTGAGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................CTCA------------------------------------TTTTGAGTATCGGGTATAAAAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102020000
...........................................CA------------------------------------TTTTGAGTATCGGGTATAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
droAna3
CC-AAAAT-TATA-----------------ATACCCTC------TGCAAGGGTATAAAAATTAAGAATTAGT-G--------------------------------------TTA--------ACTAAG-----------------------------------------TA-------------------------------------------------------AGTTACAAAATAATGAACAAAATATACTCCAAAGAA---ACCAAC--------------------C----------------------------AAATATAT---------------------------------------------------------------------------------------------------------------------------ATATATATACACA------CA----------------------------TATA-T--ACA-----------------------------------------------------------------------------------------------------------AGGACAT---------------------------------------------------------------------ATACAT-----------------------------------------------------------------------------------------------ATACCGATATATATATATA--------------------------------TATACTTATA----------------------------------------------------------------------------------------------------------------------------------TATATATATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACACA------CA----------------------------TATA-T--ACA-----------------------------------------------------------------------------------------------------------AGGACAT---------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACACA------CA----------------------------TATA-T--ACA-----------------------------------------------------------------------------------------------------------AGGACAT---------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................2511.001010000
droBip1
CC-AAAAT-TATA-----------------ATACCCTC------TGCAAGGGTATAATTACAATAATTTCTTA-AATAGTTTAT------------AG--AAATAAT----------------------------------AGTAATTATAGCAATAATAGAAGTTTGGG------------------------------------------------------------------------------------------------ACTTTTTT----------------------------------------------------------TA-------------------------GA--------------------TTT-------------------------------------------------------------------------------------------------------------C----------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------TTTATAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATATAATATTTTATAATAGTT------------------------------TTATAATATT-------------ATCA-T-ATTC-------------TCATA-----------AGGATTGGTCSizeHit CountTotal NormTotal
No Reads
droKik1
CT-AAAAT-AATA-----------------ATACCCTGGA-ATATTCAGGGATATCAATTTTTTTATTTTTTA-AATTGTTTTT------------TG----------------------------------------------------------------------------------------------------------------------------------------------------TATTATTA---------TTT------------------------------TTTTAAAT---------------TT-------------AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------TATTTTTATATTTATTTTTTTATTTATCTTA-GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------TTCTTAT--TTTTTTT-ATTTATTTTTTTTTTA---------ATTTTTAATAT-------------------------------------ATAATTAAT------------------------------------TAATTTTTGTSizeHit CountTotal NormTotal
No Reads
droFic1
CT-GAAAT-TATA-----------------ATACCCTTTTGCTCTGCAAG-------------------------------------------GGTATAAAAATATCTAATTTCCATTTTTAGGCGGTT-----------------------------------------GA-----------ACTGAAAAATAT-----------------------------------------------------------TGCTTTGAA---ATCTCC-------------------------------------------------TTTTTTATTTTTA-------------------------TTTTTTT--C-----------------------------------------------------------------------------------------------G------CA----------------------------TTTT-CTG---TTTTCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAT-----------------------------------------------------------------------------------------------TTACATTTATATATATATATATAATTCTTCATATATATTCTG------------TTTTACTGT--T-----------------------------------------------------------------------CTTACTTT--------------------------------------------------TGCCATSizeHit CountTotal NormTotal
No Reads
droEle1
CT-GAAAT-TATA-----------------ATACCCTC------TGCAAGGGTATCGATGTTATCGATTTTT-G--------------------------------------TAG--------GCTTAA-----------------------------------------AA-----------ATTGACAAAAATTGAACACTTTATTGGAATGATTA-----------------------------------------------------------------ATTACCGTTTGTT----------------------------------------------------------------TTTTTTCACGTATTCGTGTTAAATAATC---------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGTATGCACTTTTGTGATATTATTTTGGTATATGTAAGTATTGATGATGAATTTTCTC-----------GAATTG-----------AAAAA----AT-TTATTTTCATAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAACTCTTAACCTTTAAATTCAAC-A-GAGT-------------TT--TCGAGGATTGA------ATAAASizeHit CountTotal NormTotal
No Reads
droRho1
AC-GAATA-CAAT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGGGTATAAATATTACATTTTATTTTA-----ATTGAATGTTTTTATTTTTATGCT---------------------------------------------------------------------------------------------------TATTGTTA---------TTC------------------------------TTTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTAAAAACATTTAA----T-------------------------------------------------------------------------------------------------TTTTTCGCCTTATATACCCTG---------------------------------------------------------------------------------------------------------CCATTTAC-ATT------------------GGCTATG-------TATTTATTTTSizeHit CountTotal NormTotal
No Reads
droBia1
AC-TAAAT-CAAT-----------------TTGCCATTTATCGTT-----------------------------AATCCCTTTTTG---AACAAAT----------TTA----------------------------------------CGGCGAATAAAGTTCTTTCGA------------------------------------------------------------------------------------------------ACCTGCTTTTGATTT--------------------------------------------------TTA-------------------------TT--------------------AATAACT--------------------------------------------------------TCATGTTTGCAC--------ATTTGATTATTTTTTAT----TTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGAATGCTTTGACATAAGTGATCGCTTATATTGAAGTACA----------------------------------------------TCGCTTTTTA------------------------------------------------------------------------------------------------------------------------TTTCTTTACGCASizeHit CountTotal NormTotal
No Reads
droTak1
AC-GAATC-TAGT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGGGTATAAAAATCGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTACTAAGCAACT--------------------------TC-------------A----------------------------------------------------------------------------------------------------------------ATTTTACATATAAATAAA----------GC-------------------C--------------------------------------------------------------------------------------------------------CATTGTTTCGTTCATTTT----------------------------------------------------------------------------GCAT-CATATAAATCTTCAACATTTTTCATCACTTTGAATATCTTTGTCGGCAATATAAAATTCCTTTTGAAAGCCAGAAATTAGTCACAAATGGTCGTTCACGCA-----------------------------------------------------------------------------------------------------------------------------------------------AGTAAAC-A-AATT---------------------------TTTCTAGAGAAASizeHit CountTotal NormTotal
No Reads
droEug1
AC-AAATC-TAGT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGGGTATAAAAATATCAATTT----------------------------------------------------------------C---------------------------------------------------------------------------------------------------------TTCAA------------------------------------------------------------------------------------------------GAAATTTCATTATTTATTGAAATATTTTTTTA-------AACAGGTCTTGTCAAAAGTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------CTTAACTTCAAAATAAATTGG------------------------------------------ATGCAAATAGATATGTTTCAT----------------------------TTAT-----------------------------------------------------------------------------------TTTGAAC--------------------------------TACTTTTAAAAAAATTTCGAATGTTGTATGCA-T----------------------------------------------------TGTTTAAAGCACAAACACCACCTTTGAC-ATGATT-------------TTTACAATAGGGAAATTTG-------SizeHit CountTotal NormTotal
No Reads
dm3
AC-GAATG-TAGT-----------------GTACATTTTTATTTT--------------------------------------ACGAGTAACGGGTATAAACACTGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGATAT---------------AT-------------AATTCTTTTGTAAACTAAATTTTTACT--------------------GTT-------------------------------------------------------------------------------------------------------------A----------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------CGTAAAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATACTTGATTCCATTAAAAAT----------------------------------------------------------------------------------------------ATATAAGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................TAAACACTGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGATAT---------------AT-------------AATTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATACTTGATTCC................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TTACT--------------------GTT-------------------------------------------------------------------------------------------------------------A----------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------CGTAAAATAA................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTCCATTAAAAAT----------------------------------------------------------------------------------------------ATATAAGA.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGATTCCATTAAAAAT----------------------------------------------------------------------------------------------ATA......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATACTTGAT...................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATACTTGATTCCAT..............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTATTTT--------------------------------------ACGAGTAACGGGTATAAACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------------------------------------A----------------------------------------------GT---------------------------------------------------------------------------------------------------------------------------------------------CGTAAAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATA...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATACTTGATTCCAT..............................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATATACTTGATTCCATTAAAAA........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AACGGGTATAAACACTGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTTATTTT--------------------------------------ACGAGTAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTTATTTT--------------------------------------ACGAGTAACGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................................T--------------------------------------ACGAGTAACGGGTATAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................GAGTAACGGGTATAAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................TTT--------------------------------------ACGAGTAACGGGTATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTT--------------------------------------ACGAGTAACGGGTATAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
TT-AAATT-AATT-----------------------TCTGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATGATCATTGC---------------------------------------------------------------------GAAAAG--TA---C--AT-TAGTTATTTA-------------------------GA--------------------TGT-------------------------------------------------------------------------------------------------------------C----------------------------------------------GTATG---------------------------------------------------------------------------GTATTTATTAAAAAACTATAT-ATATTTTTACAAAAAA--AAACAA-----------------------------------------------------------------------------T-----------------------------------------------------------------------------TT------------------------------------CTTACC----------TT--------------------------------------------TATCTTTTAAGCTGAACCGTTGCCCCTAAT-G-GATC-------------TTTGCCGAAGAACAATTCGTCAAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-G-GATC-------------TTTGCCGAAGAACAATTCGTC.....2716.00600000005001000000
...............................................................................................................................................................................................................................ACATGATCATTGC---------------------------------------------------------------------GAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.........................................................................................................................................................................................................................................................................................................................................ATTTA-------------------------GA--------------------TGT-------------------------------------------------------------------------------------------------------------C----------------------------------------------GTATG---------------------------------------------------------------------------GTATT....................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-G-GATC-------------TTTGCCGAAGA...............1811.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-G-GATC-------------TTTGCCGAAGAACAATTCGTCA....2811.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-G-GATC-------------TTTGCCGAAGAACAATTCGT......2611.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCGTTGCCCCTAAT-G-GATC-------------TTT.......................2611.00100000000010000000
droSec2
AACGAATC-TTAT-----------------ATACCCTCTT------------------------------------------------TAACGGGTATAAAAATGAATA-------CTTT---GCTTAA-----------------------------------------AA----------------------------------------------------------------------------------------------ACCTG---------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTTAGTTATTTTATTTAATGTTCTTTCGTGTTCA--TTTATAAAATTATAATGGTTTATTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------TATTTTTAA-----------------------------------------------------------------------------------------------------------------------------------------------GAGCACTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AC-GAATC-TAGT-----------------ATACCCTTTTACTCT--------------------------------------ACGAGTAACGAGTATAAATATTT---------------------------------------------------------------------------------------------------GAGGCAAAAAATTTCTAAATTA---------------------------------------------------------------ATTT----------AACAAAG--TG---C--CTTTAAATATTTA-------------------------AA--------------------ATTTTCT--------------------------------------------------------TGATATTTG-----------------------------------------------------------AATAACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTA-----------------------------------------------------------------------------------------------TATTTATTATTTATGTTTA--------------------------------TTTAACTAT-AT--TGCTATA--------------------------------------------------GTT--TGCTTTGGGCCAAATCTTGGCACCTAAT-T-AACT-------------TTTTGAATAAGTCCATATGA--CAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TT-AAATA-A-TT-----------------------TCTG-----------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------------------------ATAAGATCATTGT---------------------------------------------------------------------AAAAGG--TA---C--ATTTAAGCATTTA-------------------------GA--------------------GTT-------------------------------------------------------------------------------------------------------------T----------------------------------------------GTACA---------------------------------------------------------------------------GCATTTATTAAA-AATTATATTATA---TTACAAAAAACAAAACAA-----------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------T-----TTTACT----------TG--------------------------------------------TATCTTTTAAGCTGAACCTTTGCCTCTAAT-G-GATC-------------TTTGCCGAAGAACAATTCGTCAAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT-G-GATC-------------TTTGCCGAAGAAC.............2211.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-G-GATC-------------TTTGCCGAAGAACAATTC........2511.0010000100

Generated: 05/16/2015 at 09:16 PM