dvi_1178

----------------##################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAAGATCAATTTTAAAATGAGCCATCACTGGGGCTATACGGAAGAGAACGGTAAGCGGCGCTCATAAGTTGTAAGCCCCAGCAAAGGGTATTATAGCTTGTGATGAAATGGGCATAGTAAAAGATATTGGCGAACCTCTCCACAACAATGTGCAAAATAATTTCTTAGTTTCTAAGCTATCTTCTTGCCACAGATTGTGCATATGTCATCCGAGAATCTTAAAACTGGCAAAACATTTTTATTGGCCTTTT ************************************************.......(((((((((((((((((..(((......)))..))))))))))))).....((((((.((...((((((..((....))....((((....))))...........(((((...))))).)))))))))))).))....)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M061 embryo	SRR060665 9_females_carcasses_total	SRR060679 140x9_testes_total	M047 female body	SRR060658 140_ovaries_total	SRR060663 160_0-2h_embryos_total	SRR060667 160_females_carcasses_total	SRR060675 140x9_ovaries_total	SRR060666 160_males_carcasses_total	SRR060687 9_0-2h_embryos_total	SRR060662 9x160_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	V047 embryo
..................GAGCCATCACTGGGGCTATACGGAAGA..............................................................................................................................................................................................................	27	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0
...............................GGCTATACGGAAGAGAACGGA.......................................................................................................................................................................................................	21	1	1	2.00	2	1	0	0	0	1	0	0	0	0	0	0	0	0
.......................ATCACTGGGGCTATACGGAAGA..............................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................CCATCACTGGGGCTATACGGAAGAGAAC..........................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...GATCAATTTTAAAATGAGCCATCACTGG............................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
................................GCTATACGGAAGAGAACG.........................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
......CAATTTTAAAATGAGCCATCACTGG............................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.......AATTTTAAAATGAGCCATCACTGGGG..........................................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
................................GATATACGGAAGAGAACGGTAAGC...................................................................................................................................................................................................	24	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
......................CATCACTGGGGCTATACGGAAGAGAAC..........................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TGCCACAGATTGTGCATATGTCATCCGA......................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGCGGCGCTCATAACTTGTAAG................................................................................................................................................................................	25	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................GAATTATAGCTAGTGATGGAA...............................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................ATATGTCATCGGAGGATC.................................	18	2	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................GTATTATAGCCTGTGGTA..................................................................................................................................................	18	3	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	1
......................................................................................................................................................................................................................AATCCTAAAAATGGCAAAA..................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................ATCGTTTCGCCACAGATTG......................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................GTATTATAGCCTGTGGTAA.................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0

TTTCTAGTTAAAATTTTACTCGGTAGTGACCCCGATATGCCTTCTCTTGCCATTCGCCGCGAGTATTCAACATTCGGGGTCGTTTCCCATAATATCGAACACTACTTTACCCGTATCATTTTCTATAACCGCTTGGAGAGGTGTTGTTACACGTTTTATTAAAGAATCAAAGATTCGATAGAAGAACGGTGTCTAACACGTATACAGTAGGCTCTTAGAATTTTGACCGTTTTGTAAAAATAACCGGAAAA ************************************************.......(((((((((((((((((..(((......)))..))))))))))))).....((((((.((...((((((..((....))....((((....))))...........(((((...))))).)))))))))))).))....)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	SRR060657 140_testes_total	M061 embryo
.........................................................................................................................TCTATAAGCGATTGGAGA................................................................................................................	18	2	8	0.13	1	0	1	0
.....................................................................................................................................TGGAGAGGTGTAGTTTCGC...................................................................................................	19	3	18	0.11	2	2	0	0
.....................................................................................CCCTTAATCTCGAACACCA...................................................................................................................................................	19	3	17	0.06	1	0	0	1
......................................................................................................................................GGAGAGGTGGTGTTATAGG..................................................................................................	19	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12723:739998-740248 +	dvi_1178	AAA--------GATC-----------AAT-TTTAAAATGAGCCATCACTGGGGCTATACGGAAGAGAACGGTAAGCGGCGCTCATAAGTTGTAAGCCCCAGCAAAGGGTATTATAGCTTGTGATGAAATGGGCATAGTAAAAGATATTGGCGAACCTCTCCACAACAATGTGCAAAATAATTTCTTAGTTTCTAAGCTATCTTCTTGCCACAGATTGTGCATATGTCATCCGAGAATCTTAAAACTGGCAAAACATTTTTATTGGCCTTTT
droMoj3	scaffold_6500:29271898-29271956 +		AAA--------GATC-----------AGA-TCTACGATGAGCCATCACTGGGGCTATACCGAAGAGAATGGTAAGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15252:4277043-4277107 +		AAA--------GATC-----------AAT-TCTAAGATGAGCCATCACTGGGGCTACACCGAAGAGAACGGTAAGCGGCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004585:7140329-7140392 -		AAAGAAATTTATTTA-----------AACTAACAAGATGAGCCATCACTGGGGTTACACCGAAGAGAATGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	4_group4:5926413-5926469 -		GAAG--A---AGT-------------CCG-AGCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_16:978013-978072 +		AGA--------GAAGAAGT-------CCG-AGCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_12916:11975515-11975576 -		TAAT--ATCCACCCA-----------ATA-ACCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396769:329671-329726 -		ACC--------AAAT-----------ATA-TCCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302236:157998-158056 -		GTAC------ATCCA--G--------CTA-ACAAAGATGAGCCATCACTGGGGTTACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453925:187983-188042 -		AAAA--CCC--TATT-----------AAA-ACCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491338:1416834-1416888 +		ATC----------TT-----------AGC-TTCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000780107:274105-274157 -		ACC--------A--------------ATA-AACAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302408:2522049-2522115 -		AGAA------AGCCA--ACCCCAGCAAAA-ATCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000416008:86963-87017 +		CTA--------TTCC-----------A-A-ATCAAGATGAGCCATCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409452:373544-373593 +		AAA-------------------------A-ACCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2L:13803913-13803968 +		AAA--------GCCA-----------AAG-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:13389444-13389500 +		ATCT------AGCCA-----------AAG-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_3:69515-69572 +		AACT------AGCCA-----------AAG-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:10215642-10215699 +		AACT------AGCCC-----------AAA-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:11662122-11662171 -		CAT-------------------------A-ACCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AAA--------GATC-----------AAT-TTTAAAATGAGCCATCACTGGGGCTATACGGAAGAGAACGGTAAGCGGCGCTCATAAGTTGTAAGCCCCAGCAAAGGGTATTATAGCTTGTGATGAAATGGGCATAGTAAAAGATATTGGCGAACCTCTCCACAACAATGTGCAAAATAATTTCTTAGTTTCTAAGCTATCTTCTTGCCACAGATTGTGCATATGTCATCCGAGAATCTTAAAACTGGCAAAACATTTTTATTGGCCTTTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................GAGCCATCACTGGGGCTATACGGAAGA..............................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GGCTATACGGAAGAGAACGGA.......................................................................................................................................................................................................	21	1	2.00	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ATCACTGGGGCTATACGGAAGA..............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CCATCACTGGGGCTATACGGAAGAGAAC..........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GATC-----------AAT-TTTAAAATGAGCCATCACTGG............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCTATACGGAAGAGAACG.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............C-----------AAT-TTTAAAATGAGCCATCACTGG............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AAT-TTTAAAATGAGCCATCACTGGGG..........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CATCACTGGGGCTATACGGAAGAGAAC..........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TGCCACAGATTGTGCATATGTCATCCGA......................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAA--------GATC-----------AGA-TCTACGATGAGCCATCACTGGGGCTATACCGAAGAGAATGGTAAGCAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............ATC-----------AGA-TCTACGATGAGCCATCA................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droGri2

AAA--------GATC-----------AAT-TCTAAGATGAGCCATCACTGGGGCTACACCGAAGAGAACGGTAAGCGGCGTCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................AAT-TCTAAGATGAGCCATCAC...............................................................................................................................................................................................................................	21	1	1.00	1	1	0
.................................................GGGGCTACACCGAAGAGAA...........................................................................................................................................................................................................	19	1	1.00	1	1	0

droWil2

AAAGAAATTTATTTA-----------AACTAACAAGATGAGCCATCACTGGGGTTACACCGAAGAGAATGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................AACAAGATGAGCCATCACTGGG...........................................................................................................................................................................................................................	22	1	4.00	4	0	0	3	1	0
...................................GATGAGCCATCACTGGGGT.........................................................................................................................................................................................................................	19	1	4.00	4	0	0	1	3	0
..............................AACAAGATGAGCCATCACTGG............................................................................................................................................................................................................................	21	1	3.00	3	0	0	3	0	0
...................................GATGAGCCATCACTGGGG..........................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
...................................GATGAGCCATCACTGGGGTTAC......................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................GATGAGCCATCACTGGGGTTACAC....................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...............................................CTGGGGTTACACCGAAGAGAATGGAC......................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.........TATTTA-----------AACTAACAAGATGAGC.....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............A-----------AACTAACAAGATGAGCCATCACTGGGGT.........................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
...................................GATGAGCCATCACTGGGGTTACA.....................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...................................................GGTTACACCGAAGAGAATGGAC......................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...............................ACAAGATGAGCCATCACT..............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....................................................TTACACCGAAGAGAATGGAC......................................................................................................................................................................................................	20	2	1.00	2	2	0	0	0	0
....................................ATGAGCCATCACTGGGGTTACA.....................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...................................................GGTTACACCGAAGAGAATG.........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
....................................................GTTACACCGAAGAGAATG.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................ACTGGGGTTACACCGAAGAGAATGGAC......................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
..................................................GGGTTACACCGAAGAGAATGGAC......................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
........TTATTTA-----------AACTAACAAGATGAGC.....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................................AGATGAGCCATCACTGGGGT.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
............TTA-----------AACTAACAAGATGAGCCATCACT..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
......................................GAGCCATCACTGGGGTTACACCGAAGA..............................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
............................CTAACAAGATGAGCCATCACTGGG...........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..............................AACAAGATGAGCCATCACT..............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............A-----------AACTAACAAGATGAGCCATCACT..............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............TA-----------AACTAACAAGATGAGC.....................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
...........TTTA-----------AACTAACAAGATGAGCC....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..................................AGATGAGCCATCACTGGGGTTACACCG..................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..................................AGATGAGCCATCACTGGG...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

dp5

GAAG--A---AGT-------------CCG-AGCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................ATGAGCCACCACTGGGGTTACACC...................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................CACCACTGGGGTTACACCGAGGAGA............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GCAAGATGAGCCACCACTGGGGT.........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................GCCACCACTGGGGTTACACCGA.................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................GATGAGCCACCACTGGGGTT........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................GCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............T-------------CCG-AGCAAGATGAGCCACCA................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........AGT-------------CCG-AGCAAGATGAGCCA...................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..AG--A---AGT-------------CCG-AGCAAGATGAGCCACCAC...............................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................AAGATGAGCCACCACTGGGGTTACACCG..................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

AGA--------GAAGAAGT-------CCG-AGCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................GT-------CCG-AGCAAGATGAGCCACCACTGG............................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
...............................GCAAGATGAGCCACCACTGGGGT.........................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................CACTGGGGTTACACCGAG................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..............GAAGT-------CCG-AGCAAGATGAGCC....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
......................................GAGCCACCACTGGGGTTACACCGAGGA..............................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..............................................ACTGGGGTTACACCGAGGA..............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............AAGAAGT-------CCG-AGCAAGATGAGC.....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................GTTACACCGAGGAGAACG.........................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...........GAAGAAGT-------CCG-AGCAAGAT.........................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........GAAGAAGT-------CCG-AGCAAGATGAGCC....................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................GTTACACCGAGGAGAACGGACC.....................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0

droAna3

TAAT--ATCCACCCA-----------ATA-ACCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................A-ACCAAGATGAGCCACCACTGG............................................................................................................................................................................................................................	22	1	2.00	2	1	0	1	0	0	0
............................A-ACCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0
........................................GCCACCACTGGGGTTACACCGAGGA..............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................................GATGAGCCACCACTGGGGTTACACCGA.................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
............................A-ACCAAGATGAGCCACCACTGGGGTTA.......................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
..............A-----------ATA-ACCAAGATGAGCCACCACTGGGGT.........................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
............................A-ACCAAGATGAGCCACCACTGGGGTT........................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................ATA-ACCAAGATGAGCCACC.................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...T--ATCCACCCA-----------ATA-ACCAAGAT.........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..........ACCCA-----------ATA-ACCAAGATGAGC.....................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................TACACCGAGGAGAACGGA.......................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
....................................ATGAGCCACCACTGGGGTTACACCGAGG...............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
.................................AAGATGAGCCACCACTGGGGTT........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................ATGAGCCACCACTGGGGTTACACCGAG................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
....................................ATGAGCCACCACTGGGGTTACACCGA.................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droBip1

ACC--------AAAT-----------ATA-TCCAAGATGAGCCACCACTGGGGTTACACCGAGGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTAC------ATCCA--G--------CTA-ACAAAGATGAGCCATCACTGGGGTTACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAA--CCC--TATT-----------AAA-ACCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATC----------TT-----------AGC-TTCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACC--------A--------------ATA-AACAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGAA------AGCCA--ACCCCAGCAAAA-ATCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTA--------TTCC-----------A-A-ATCAAGATGAGCCATCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAA-------------------------A-ACCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAA--------GCCA-----------AAG-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................CAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0
...................................GATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ACTGGGGATACACCGAAGAGAACG.........................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................G-TCCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................GATACACCGAAGAGAACG.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GGATACACCGAAGAGAACGGG.......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................ACTGGGGATACACCGAAGAGA............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ACCACTGGGGATACACCGAA................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCACCACTGGGGATACACCGAAGA..............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATCT------AGCCA-----------AAG-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................GATACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................ATACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	21	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CT------AGCCA-----------AAG-TCCAAGATG........................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AGATGAGCCACCACTGGGGATAC......................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................ACTGGGGATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AACT------AGCCA-----------AAG-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........AGCCA-----------AAG-TCCAAGATGAGC.....................................................................................................................................................................................................................................	20	1	3.00	3	0	2	1	0
...............................CCAAGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	24	1	3.00	3	0	2	1	0
...............................CCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
...............................CCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0
...................................................GGATACACCGAAGAGAACGGA.......................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0
...................................GATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
....................................ATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	1
...................................GATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0
............................G-TCCAAGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
AACT------AGCCA-----------AAG-TCCAAGATGAGCCA...................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.................................AAGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..........AGCCA-----------AAG-TCCAAGATGAGCCACCA................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
...........................AG-TCCAAGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
....................................................GATACACCGAAGAGAACG.........................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
................................CAAGATGAGCCACCACTGGGGATACACC...................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..........AGCCA-----------AAG-TCCAAGATGA.......................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
....................................................GATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
................................CAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..........................AAG-TCCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..............A-----------AAG-TCCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
..................................AGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...............................................CTGGGGATACACCGAAGAG.............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.................................AAGATGAGCCACCACTGGGGATACACC...................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.................................AAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.............CA-----------AAG-TCCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
.............CA-----------AAG-TCCAAGATGAGCCACCACT..............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0

droYak3

AACT------AGCCC-----------AAA-TCCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................GATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...............................................CTGGGGATACACCGAAGAGAACG.........................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................ATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
................................CAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............................A-TCCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................AA-TCCAAGATGAGCCACCACTGGGGATAC......................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................CAAGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................GATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................CACCACTGGGGATACACCGAAGAGA............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................GGGATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................ATGAGCCACCACTGGGGATACACC...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................AAA-TCCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
........................................GCCACCACTGGGGATACACCGA.................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................AAGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................AGATGAGCCACCACTGGGGATACACCG..................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................GGGGATACACCGAAGAGAACG.........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................ATACACCGAAGAGAACGGA.......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................GGATACACCGAAGAGAACG.........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............C-----------AAA-TCCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.ACT------AGCCC-----------AAA-TCCAAGATGAGC.....................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........GCCC-----------AAA-TCCAAGATGAGCCA...................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................GGGATACACCGAAGAGAACG.........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................GATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................GCCACCACTGGGGATACACCGAAGAGAAC..........................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................CACCACTGGGGATACACCGAAGA..............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................A-TCCAAGATGAGCCACCACTG.............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................CACTGGGGATACACCGAAGAGAAC..........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CCC-----------AAA-TCCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........AGCCC-----------AAA-TCCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................ATACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................ACACCGAAGAGAACGGAC......................................................................................................................................................................................................	18	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

CAT-------------------------A-ACCAAGATGAGCCACCACTGGGGATACACCGAAGAGAACGGTAAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.AT-------------------------A-ACCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	26	1	12.00	12	1	1	1	0	8	1	0
.AT-------------------------A-ACCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	25	1	6.00	6	2	0	0	0	3	1	0
.AT-------------------------A-ACCAAGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	27	1	5.00	5	1	0	0	0	3	1	0
...................................GATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	4	0
...................................GATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0
....................................................GATACACCGAAGAGAACGG........................................................................................................................................................................................................	19	1	2.00	2	0	0	0	1	1	0	0
CAT-------------------------A-ACCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0	0
.AT-------------------------A-ACCAAGATGAGCCACCACT..............................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	1	0
.AT-------------------------A-ACCAAGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	28	1	2.00	2	1	0	0	0	1	0	0
................................CAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
.......................................AGCCACCACTGGGGATACACCGAA................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................GATACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................AGCCACCACTGGGGATACACCGAAGA..............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.....................................................ATACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................................AAGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
CAT-------------------------A-ACCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.....................................................ATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..T-------------------------A-ACCAAGATGAGCCACCACTGGGG..........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
................................CAAGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
............................A-ACCAAGATGAGCCACCACTGGGA..........................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.......................................AGCCACCACTGGGGATACACCG..................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
......................................................TACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	20	2	1.00	2	1	1	0	0	0	0	0
..T-------------------------A-ACCAAGATGAGCCACCACTGGGGATAC......................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..................................AGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..................................................GGGATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................ATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................................................GGGGATACACCGAAGAGAACG.........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...............................................CTGGGGATACACCGAAGAGA............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..................................AGATGAGCCACCACTGGGGATACACCG..................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
........................................GCCACCACTGGGGATACACCGAA................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...........................................ACCACTGGGGATACACCGAAGAGAAC..........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................................CAAGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.AT-------------------------A-ACCAAGATGAGCCACCACTGG............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..T-------------------------A-ACCAAGATGAGCCACCACTG.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
............................A-ACCAAGATGAGCCACCACT..............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.................................................GGGGATACACCGAAGAGAACGGAC......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................................AAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.......................................AGCCACCACTGGGGATACACCGAAGAG.............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.........................................CCACCACTGGGGATACACCGAAGAGAAC..........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
............................A-ACCAAGATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................A-ACCAAGATGAGCCACCACTGGGGA.........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
............................A-ACCAAGATGAGCCACCACTGGG...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................ACCAAGATGAGCCACCACTGGGGATACAC....................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
........................................GCCACCACTGGGGATACACCGAAGAG.............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
............................................CCACTGGGGATACACCGAAGA..............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................................CACCACTGGGGATACACCGAA................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................TGAGCCACCACTGGGGATAC......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
......................................GAGCCACCACTGGGGATACACCG..................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................GATGAGCCACCACTGGGGAT........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................ACACCGAAGAGAACGGACC.....................................................................................................................................................................................................	19	16	0.06	1	1	0	0	0	0	0	0

dvi_1178

scaffold_12723:740048-740198 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads