ID:

dvi_11741

 Coordinate:

scaffold_12963:14160865-14161016 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ17519-cds]; CDS [Dvir\GJ17519-cds]; exon [dvir_GLEANR_2106:3]; exon [dvir_GLEANR_2106:2]; intron [Dvir\GJ17519-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAAACTTAAGGAATCTGAGCACATCTGATGGAACTTATAATGGTGTTCGGTAAGTTAATGTAAACAACTTAAAGCCGTTTTTATATTGTTGAAAAAGTTGATGGCAGTTGTCAAGAGAACATTTCGCCTTTTTCGCGATTAAAATTTAAATTGGAATTTATTTTAAAAACATAATATTGAGCTAGCTTTAATGTTTTTCAGATTGTTTAAATGTCGTGAAGGTGGAGCTATTTTTGTACCGTCTAATAAAT
**************************************************.....((.......(((..(((((((.((((.(((..((((...(((((.(((..(((((..............((((.......))))..........)))))..))).)))))...))))..)))..))))..)))))))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060680
 9xArg_testes_total
 M047
female body
 SRR060675
140x9_ovaries_total
 SRR060658
140_ovaries_total
 V053
head
 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060659
Argentina_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
.................TAGCACATCTGATGGAACTTATAATGG................................................................................................................................................................................................................ 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ACTTAAGGAATCTGAGCACATCTGA............................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
........AAGGAATCTGAGCACATCT................................................................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTTAAATGTCGTGAAGGTGGA......................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........AGGAATCTGAGCACATCTGATGGAACT........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGTGAAGGTGGAGCTATTTTTGTACC........... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................CACATCTGATGGAACTTATAATGGTG.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCTGATGGAACTTATAATGGTGTTCGA......................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TCGATTGTTTAAATGTCGTGAAGGTG........................... 26 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCGATTGTTTAAATGTCGTGAAGGTGG.......................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATCTGATGGAACTTATAATGG................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTAAATGTCGTGAAGGTGGAGCTATT................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GTTTAAATGTCGTGAAGGTGGA......................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTAAATGTCGTGAAGGTGGAGCTAT.................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTCAGATTGTTTAAATGTCGT.................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GTTTAAATGTCGTGAAGGTGGAGCT...................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTTCGATTGTTTAAATGTCGTGAAGGT............................ 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................TGATGGAACTTATAATGGTGTTCGAT........................................................................................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CTTACGGAATCTGAGGAC..................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................TATGATGGTGTTCGGCAA...................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................GTGAAGATGGAGATATTTTAG............... 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGAGATATCTTTAATGTTT....................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GTTGAAAAAGTTGATGCT.................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGTTTGAATTCCTTAGACTCGTGTAGACTACCTTGAATATTACCACAAGCCATTCAATTACATTTGTTGAATTTCGGCAAAAATATAACAACTTTTTCAACTACCGTCAACAGTTCTCTTGTAAAGCGGAAAAAGCGCTAATTTTAAATTTAACCTTAAATAAAATTTTTGTATTATAACTCGATCGAAATTACAAAAAGTCTAACAAATTTACAGCACTTCCACCTCGATAAAAACATGGCAGATTATTTA
**************************************************.....((.......(((..(((((((.((((.(((..((((...(((((.(((..(((((..............((((.......))))..........)))))..))).)))))...))))..)))..))))..)))))))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060685
9xArg_0-2h_embryos_total
 M047
female body
 SRR060677
Argx9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
...............GACTCGTGTAGACTACCGT.......................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................TTGTATTATAACTCGATCGA................................................................ 20 0 1 1.00 1 0 1 0 0 0
...............GACTCGTGTAGACTACCGTA......................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0
.............TAGAATCGTGTAGACTACCTTGAAT...................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0
...............................................................................................TCCAACTACCACCAACAGTT......................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1
.....................................................................................................................................................................................CGATCGAAATTGCCAAAATT................................................... 20 3 17 0.06 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:14160815-14161066 + dvi_11741 CCAAACTTAAGGAATCTGAGCACATCTGATGGAACTTATAATGGTGTTCGGTAAGTT-----------AAT---GTAAA------------------------------------------------CAACTT--------------------------AAA----------------------------GCCGTTTTTATATTGTTGAAAAAGTTGATGGCAGTTGTCAAGAGAACATTTCGCCTTTTTCGCGATTAAA---------------------------------------------ATTTAAATTGGAATT---------------------------------------------------------------------------------TAT------------------------------------------------------------------------------------------------------TTT---------------------AAAAACATAATA---------------TTGAGCTAGCTTTAATGTTTTTCAGATTGTTTAAATGTCGTGAAGGTGGAGCTATTTTTGTACCGTCTAATAAAT
droMoj3 scaffold_6500:29813197-29813345 + GGCAGTCTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTGTTTTATTTTAAAGTA-----------------CTTAAAT------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAAT--------------------------------------------TAAATC----------------TTTCT--------------------------------------------------------------------------------------------------------------------------------------------AATAAAATTCAATAATTA----------TATATTTCAGATTATTTCACTGTCGTGAAGGTGGAGCTATTTTTGTTCCGCCAAACAAAT
droGri2 scaffold_15126:1715380-1715564 - CCAAACTTAAAGAATCTTACCACATCGGATGGAACTTATAATGGCGTCCGGTAAATG-----------ATCT------A-------------CG----TATATC----------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------TCTTAAATTGTTATTTAAACTATAAATA--------------------------------------------TAATAA----------------TCTAA--------------------------------------------------------------------------------------------------------------------------------------------TCTGAAAACTT------------TGA--TTTCTCCTAGATTGTTTCAGTGTCGTGAAGGTGGAGCTATTTTCGTGCCTCCCAATAAAT
droWil2 scf2_1100000004852:507656-507914 + GTAAATTTGAAACATCTTTCAACCTCCAATGGAAGCTATAATGGGATTCGGTAAATTAATAATTAATTTGT---GA------------------------------------------------AACATG--T------------------------AGTACC----------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------TTTAGTTAAACCGTGAGAAATAAATT-----------------------------------------------------------------GTTTAACTTTTTACTTAACTCTAAT-------------T---------------------TAAATTTGCTGACA---------CTACTGTGATAAATATTACTACTGTAAAT--TT--------TTAATAAAAACCA-----------------TTATTTTTAGGTTATTTGAGTGCAATGAAGGTCGTGCATTGTTTGTTCCGCCCAGCAAGT
dp5 Unknown_singleton_3291:617-706 - AAGATA---AAAA-TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTATTTTTGAGGTTAAAATTTGTATAAGAATCTTTTTATAATATCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGAAA---------------TCAAGCGTATCTCAAAATTTTT----------------------------------------------------C
droPer2 scaffold_1:1241039-1241095 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCTTTTTTACGTGTCACCAAGGTCGGGCTATTTTTGTAACGTCCGACAGGT
droAna3 scaffold_12916:14126255-14126415 - TCAAACTTAAAGAGTATGATAACTTCAGATGGAAGACACAATGGGGTTCGGTATGTA-----------ATG----TGAA------------------------------------------------AAATAC--------------------------AAC----------------------------GAAGCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGATTGTAATT-----CGATTT--------------------------------------------------------------------------------------------------------CTTTTTATAGCCTATTTACGTGCCAAGATGGTCGGGCTGTTTTTGTGCCAGCAAATAAGT
droBip1 scf7180000395768:31019-31236 - GCGATTTTGAAAA-TATATA---AACAAATATGACG-AAAATTGTATACATTATAGG-----TTTTTTTAA---GT------------------------------------------------ATCCAGTCT--------------------------TAT----------------------------GCAATTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------TTCAGTTAATGTATT------AAAAGATTATGATTTTTATTAATTTTCGTTTATTTAATATTTAAAAACCAAAACAAAATTTCATTT---------------------AAAAAAATAAAA---------------TAAAACATACA------------------------------------TTAAATAAAGTTGTCCCAATC-GTATAA
droKik1 scf7180000302472:3039253-3039413 + TCCAACTTGAAGAACGTTTTGACCTCAGACGGCAGGCATAACGGAGTTCGGTAAGCT-----------TTT-------------------------------ATTCAAAAATA-----------------TGTATTT------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAT----------------------------------------------------------------------------------------------------------------------ATTTTAATT-----TATTTT-----------------------------------------------------------------------------TTGA-------------------------ATTTCCAGCTTATTCACATGCCACGAGGGTCGAGCCGTGTTTGTCCCCGCTAACAGAT
droFic1 scf7180000453838:528299-528470 - TCCAACTTGAAAAATGTGTCGACATCAGACGGAAGGCACAATGGTGTTCGGTATGTT-----------TTT---------------------TG----CTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------ACTAAAGGTGTAATTT-----------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------AATGC----------------------------------AAAA---ACCTTTTGTGTTCTGT--TTTATTATAGCTTATTTACTTGCCATGATGGTCGAGCTGTTTTTGTACCAGCCAACAGAT
droEle1 scf7180000491186:3385712-3385904 - TCCAACTTAAAGAACGTTGTGACATCAGATGGAAGGCATAATGGAGTTCGGTATGTT-----------TTT---GTTTA------TAAA----------------------AAAACTTTTATTTTTGGCATCG--------------------------TTT-------------------------------------------------------------------------------------------------------------------------GCATT-----------------------------------------------------------------------------------------TTT---------------------TTT------------------------------------------------------------------------------------------------------TTT---------------------ACT---------------AACTCTATTATTTGCTTTCTATA--TTGTTTTAGCTTATTCACTTGCCACGATGGTCGAGCTGTTTTTGTACCAGCCAACAGAT
droRho1 scf7180000762873:583-693 - ATCGTT--GAAAAAGTTTTTAGC--------------------------------------------------------CATTTACAAA----------------------AA-------------------------------------------------------------------------------------------------------------------------AACATTTTGC-------------------------------------TCATATTTTCATAACCGGCATTACATTAAGAATA--------------------------------------------------------------------------------------TCA------------------------------------------------------------------------------------------------------TTT---------------------ATAA---------------ATATTGATATCA--------------------ACTT---------------------------------------GGTAATGT
droBia1 scf7180000301468:428367-428636 - TCGAACTTGAAAAACGTTGTGACATCGGATGGGAGGCATAATGGCGTTCGGTACGAT-----------TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGCTTCTATGCATAAGCAATG--------------------------------------------------------------------------------------CAAGCTATGAAATCTTTGTTTTTCTTTCTAATTGGCAATGTT-------------TGTTAT----------------TGAACTTGTTTACCCCAACAGAACTCTTGCGATGCATATGTTTAATGTAC--------------ATACTAGAATTTATCATTTGTTTTCC-CA--TTGTTCTAGTTTATTTACTTGCCACGATGGTCGAGCTATTTTTGTACCAGCCAACAGAT
droTak1 scf7180000415438:504896-505107 - TCAAACTTGAAAAATGTTGTGACATCGGATGGGAGGCATAATGGTGTTCGGTATGAT-----------ATTTTTGATTACATTTAAC-----------------------GTA-----------------CTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGAGTA--------------------------------------------------------------CAATTTTTTCAGTTCTCTTCCA-------------------------------------------------------------------------------------------------------------GATGCAT-----------------AT--------ATACTAAAAACTACTTTTTATCTCG--TA--TTGTTTCAGCTTATTTACTTGCCACGATGGTCGAGCTATTTTTGTACCAGCCAACAGAT
droEug1 scf7180000409554:4622902-4623063 + TCTAACTTGAAAAATGTTGTGACATCGGATGGAAGGCATAATGGCGTTCGGTACGTT-----------GGTATTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTCAACTTTACCTTTTATTTTAT-TA--TTATTTTAGACTATTTACTTGCCATGATGGCCGTGCTATTTTTGTACCAGCCAATAGAT
dm3 chr2L:10297557-10297754 - TCCAACTTGAAAAATGTAGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTC-----------ATACTTTTAAACATTTAAAACACA----------------------------------------TAAATAGGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAG--------------------------------------------AAAAAC----------------TCTTA--------------------------------------------------------------------------------------------------------------------------------------------ACTGAAAAATATCTTCTGTGTTGTGT--TTTGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGAT
droSim2 2l:9975660-9975857 - dsi_15837 TCCAACTTGAAAAATGTTGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTT-----------ATACTTATAAACATTTAAAACACA----------------------------------------TAAATAGGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAG--------------------------------------------AAAAAC----------------TCTTA--------------------------------------------------------------------------------------------------------------------------------------------ACTGAAAACTATCTTCTGTGTTGTGC--TTTGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGAT
droSec2 scaffold_3:5722640-5722824 - TCCAACTTGAAAAATGTTGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTT-----------ATACTTTTAAACATTTA-----------------------------------------------------GCTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAG--------------------------------------------AAAAAC----------------TCTTA--------------------------------------------------------------------------------------------------------------------------------------------ACTGAAAACTATCTTCTGTGTTGTGT--TTCGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGAT
droYak3 2L:12971801-12972059 - TCCAACTTGAAAAATGTTGTGGCATCGGATGGGCGGCACAATGGCGTACGGTATGTG-----------GTACTTTTAAACATT--AAATTTA----------------------------------------TACATAGGTACTTATACTAAGGTGTTGTAGTCACTAAAGTTTGTTTAAGTAAGCTAACTTTATTTTCCCATTATTC---------------------------------------------------------------------------AAAATTCC----------------------------------------------------------------------------------------ATAT----------------TCTCT--------------------------------------------------------------------------------------------------------------------------------------------ACTAAATACTAGCTTTTGTGTTCTGTA-TTTTTTTTAGCTTATTTACTTGCCACGATGGTCGAGCTATTTTTGTACCAGCCAACAGAT
droEre2 scaffold_4929:10904096-10904349 - TCCAACTTGAAAAATGTTGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTC-----------ATACTTTTAAACATTTAAAAAACA----------------------------------------AAA----GTATTTTTACTAAGTAGTTGTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGAGTTAAAGCATGGTAATTAGCTTGTTAATTATTTTTCGATTTGCAAGAAA-------------------TTTTC--------------------------------------------------------------------------------------------------------------------------------------------CCCAAAAACTATCTTTTGTTGTCTGTA--TTGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCAAACTTAAGGAATCTGAGCACATCTGATGGAACTTATAATGGTGTTCGGTAAGTT-----------AAT---GTAAA------------------------------------------------CAACTT--------------------------AAA----------------------------GCCGTTTTTATATTGTTGAAAAAGTTGATGGCAGTTGTCAAGAGAACATTTCGCCTTTTTCGCGATTAAA---------------------------------------------ATTTAAATTGGAATT---------------------------------------------------------------------------------TAT------------------------------------------------------------------------------------------------------TTT---------------------AAAAACATAATA---------------TTGAGCTAGCTTTAATGTTTTTCAGATTGTTTAAATGTCGTGAAGGTGGAGCTATTTTTGTACCGTCTAATAAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....ACTTAAGGAATCTGAGCACATCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000010000000100000000000000000000000000000000000000
........AAGGAATCTGAGCACATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAATGTCGTGAAGGTGGA.........................2111.001000000000000000000000000000000000000000000000000000000000000100
.........AGGAATCTGAGCACATCTGATGGAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAAGGTGGAGCTATTTTTGTACC...........2611.001000000000000000000000000000000000000000100000000000000000000000
....................CACATCTGATGGAACTTATAATGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
........................TCTGATGGAACTTATAATGGTGTTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.......................ATCTGATGGAACTTATAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCGTGAAGGTGGAGCTATT...................2611.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATGTCGTGAAGGTGGA.........................2211.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGTCGTGAAGGTGGAGCTAT....................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGATTGTTTAAATGTCGT..................................2111.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAATGTCGTGAAGGTGGAGCT......................2511.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GTTGAAAAAGTTGATGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000001000000000000000000000000000000
droMoj3
GGCAGTCTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTGTTTTATTTTAAAGTA-----------------CTTAAAT------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAAAT--------------------------------------------TAAATC----------------TTTCT--------------------------------------------------------------------------------------------------------------------------------------------AATAAAATTCAATAATTA----------TATATTTCAGATTATTTCACTGTCGTGAAGGTGGAGCTATTTTTGTTCCGCCAAACAAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......CTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25141.07151110030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTTCACTGTCGTGAAGGT............................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCACTGTCGTGAAGGTGGA.........................2311.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACTGTCGTGAAGGTGGAGC.......................2411.001100000
......CTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTGTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.444400000
......CTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.406600000
......CTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24140.294400000
......CTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.273300000
.GCAGTCTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.071100000
....GTCTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.071100000
......CTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.061100000
......CTCGACT-----------------AGA-------------------GCA-T-----------TCT---------------------TACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
CCAAACTTAAAGAATCTTACCACATCGGATGGAACTTATAATGGCGTCCGGTAAATG-----------ATCT------A-------------CG----TATATC----------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------TCTTAAATTGTTATTTAAACTATAAATA--------------------------------------------TAATAA----------------TCTAA--------------------------------------------------------------------------------------------------------------------------------------------TCTGAAAACTT------------TGA--TTTCTCCTAGATTGTTTCAGTGTCGTGAAGGTGGAGCTATTTTCGTGCCTCCCAATAAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTAAATTTGAAACATCTTTCAACCTCCAATGGAAGCTATAATGGGATTCGGTAAATTAATAATTAATTTGT---GA------------------------------------------------AACATG--T------------------------AGTACC----------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------TTTAGTTAAACCGTGAGAAATAAATT-----------------------------------------------------------------GTTTAACTTTTTACTTAACTCTAAT-------------T---------------------TAAATTTGCTGACA---------CTACTGTGATAAATATTACTACTGTAAAT--TT--------TTAATAAAAACCA-----------------TTATTTTTAGGTTATTTGAGTGCAATGAAGGTCGTGCATTGTTTGTTCCGCCCAGCAAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGCAATGAAGGTCGTGC.......................2111.00100100
.................................................................................................................................................................................................A-------------------------------------------------------------------------------------------------------------------------------------TTTAGTTAAACCGTGAGA...............................................................................................................................................................................................................................................................................................1911.00100010
.......TGAAACATCTTTCAACCTCCAATGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.........................CCAATGGAAGCTATAATGGGATTCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTGCAATGAAGGTCGTGC.......................2211.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------TTATTTTTAGGTTATTTGAGT.......................................2211.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGTCGTGCATTGTTTGTTCCGCCC.......2811.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTCGTGCATTGTTTGTTC............2211.00100100
.....................................................................GT---GA------------------------------------------------AACATG--T------------------------AGTACC----------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------TTTA.............................................................................................................................................................................................................................................................................................................2420.50101000
....................................TATAATGGGATTCGGTAAATTAATAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTGATAAATATTACTACTGTAAAT--....................................................................................................2830.33101000
......................................TAATGGGATTCGGTAAATTAATAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGATAAATATTACTACTGTAAAT--....................................................................................................2730.33101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATAAATATTACTACTGTAAAT--TT--------T.........................................................................................2830.33101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTGATAAATATTACTACTGTAAA.......................................................................................................2730.33101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAT-------------T---------------------TAAATTTGCTGACA---------CTAC...............................................................................................................................2530.33101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------TAAATTTGCTGACA---------CTACTGTGATAA.......................................................................................................................2730.33101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGCTGACA---------CTACTGTGA..........................................................................................................................2330.33101000
dp5
AAGATA---AAAA-TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTATTTTTGAGGTTAAAATTTGTATAAGAATCTTTTTATAATATCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGAAA---------------TCAAGCGTATCTCAAAATTTTT----------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCTTTTTTACGTGTCACCAAGGTCGGGCTATTTTTGTAACGTCCGACAGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTTTACGTGTCACC.................................1811.001000010
droAna3
TCAAACTTAAAGAGTATGATAACTTCAGATGGAAGACACAATGGGGTTCGGTATGTA-----------ATG----TGAA------------------------------------------------AAATAC--------------------------AAC----------------------------GAAGCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGATTGTAATT-----CGATTT--------------------------------------------------------------------------------------------------------CTTTTTATAGCCTATTTACGTGCCAAGATGGTCGGGCTGTTTTTGTGCCAGCAAATAAGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAAGATGGTCGGGCTGT....................2112.002000002
droBip1
GCGATTTTGAAAA-TATATA---AACAAATATGACG-AAAATTGTATACATTATAGG-----TTTTTTTAA---GT------------------------------------------------ATCCAGTCT--------------------------TAT----------------------------GCAATTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------TTCAGTTAATGTATT------AAAAGATTATGATTTTTATTAATTTTCGTTTATTTAATATTTAAAAACCAAAACAAAATTTCATTT---------------------AAAAAAATAAAA---------------TAAAACATACA------------------------------------TTAAATAAAGTTGTCCCAATC-GTATAASizeHit CountTotal NormTotal
No Reads
droKik1
TCCAACTTGAAGAACGTTTTGACCTCAGACGGCAGGCATAACGGAGTTCGGTAAGCT-----------TTT-------------------------------ATTCAAAAATA-----------------TGTATTT------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAT----------------------------------------------------------------------------------------------------------------------ATTTTAATT-----TATTTT-----------------------------------------------------------------------------TTGA-------------------------ATTTCCAGCTTATTCACATGCCACGAGGGTCGAGCCGTGTTTGTCCCCGCTAACAGATSizeHit CountTotal NormTotal
No Reads
droFic1
TCCAACTTGAAAAATGTGTCGACATCAGACGGAAGGCACAATGGTGTTCGGTATGTT-----------TTT---------------------TG----CTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------ACTAAAGGTGTAATTT-----------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------AATGC----------------------------------AAAA---ACCTTTTGTGTTCTGT--TTTATTATAGCTTATTTACTTGCCATGATGGTCGAGCTGTTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotal
No Reads
droEle1
TCCAACTTAAAGAACGTTGTGACATCAGATGGAAGGCATAATGGAGTTCGGTATGTT-----------TTT---GTTTA------TAAA----------------------AAAACTTTTATTTTTGGCATCG--------------------------TTT-------------------------------------------------------------------------------------------------------------------------GCATT-----------------------------------------------------------------------------------------TTT---------------------TTT------------------------------------------------------------------------------------------------------TTT---------------------ACT---------------AACTCTATTATTTGCTTTCTATA--TTGTTTTAGCTTATTCACTTGCCACGATGGTCGAGCTGTTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotal
No Reads
droRho1
ATCGTT--GAAAAAGTTTTTAGC--------------------------------------------------------CATTTACAAA----------------------AA-------------------------------------------------------------------------------------------------------------------------AACATTTTGC-------------------------------------TCATATTTTCATAACCGGCATTACATTAAGAATA--------------------------------------------------------------------------------------TCA------------------------------------------------------------------------------------------------------TTT---------------------ATAA---------------ATATTGATATCA--------------------ACTT---------------------------------------GGTAATGTSizeHit CountTotal NormTotal
No Reads
droBia1
TCGAACTTGAAAAACGTTGTGACATCGGATGGGAGGCATAATGGCGTTCGGTACGAT-----------TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGCTTCTATGCATAAGCAATG--------------------------------------------------------------------------------------CAAGCTATGAAATCTTTGTTTTTCTTTCTAATTGGCAATGTT-------------TGTTAT----------------TGAACTTGTTTACCCCAACAGAACTCTTGCGATGCATATGTTTAATGTAC--------------ATACTAGAATTTATCATTTGTTTTCC-CA--TTGTTCTAGTTTATTTACTTGCCACGATGGTCGAGCTATTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotal
No Reads
droTak1
TCAAACTTGAAAAATGTTGTGACATCGGATGGGAGGCATAATGGTGTTCGGTATGAT-----------ATTTTTGATTACATTTAAC-----------------------GTA-----------------CTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGAGTA--------------------------------------------------------------CAATTTTTTCAGTTCTCTTCCA-------------------------------------------------------------------------------------------------------------GATGCAT-----------------AT--------ATACTAAAAACTACTTTTTATCTCG--TA--TTGTTTCAGCTTATTTACTTGCCACGATGGTCGAGCTATTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotal
No Reads
droEug1
TCTAACTTGAAAAATGTTGTGACATCGGATGGAAGGCATAATGGCGTTCGGTACGTT-----------GGTATTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTCAACTTTACCTTTTATTTTAT-TA--TTATTTTAGACTATTTACTTGCCATGATGGCCGTGCTATTTTTGTACCAGCCAATAGATSizeHit CountTotal NormTotal
No Reads
dm3
TCCAACTTGAAAAATGTAGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTC-----------ATACTTTTAAACATTTAAAACACA----------------------------------------TAAATAGGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAG--------------------------------------------AAAAAC----------------TCTTA--------------------------------------------------------------------------------------------------------------------------------------------ACTGAAAAATATCTTCTGTGTTGTGT--TTTGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGTTGTGT--TTTGTTTTAG..................................................2314.0040000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.......................ATCGGATGGGAGACACAATGGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................AGTGGCATCGGATGGGAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGTTGTGT--TTTGTTTTAG..................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
.............ATGTAGTGGCATCGGATGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGGATGGGAGACACAATGGCGTACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGATGGTCGAGCTATT...................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGATGGTCGAGCTATTT..................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCCATGATGGTCGAGCTATTT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGAAAAATGTAGTGGCATCGGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACTTGAAAAATGTAGTGGCATCGGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGTTGTGT--TTTGTTT.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
........GAAAAATGTAGTGGCATCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTGCCATGATGGTCGAGC.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GGATGGGAGACACAATGGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTACTTGCCATGATGGTCGA.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................AGTGGCATCGGATGGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTGTGTTGTGT--TTTGTTTTAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGATGGTCGAGCTATTTTTG...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGTTGTGT--TTTGTTTTA...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTACTTGCCATGATGGTCGAGC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................TAGTGGCATCGGATGGGAGACACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AATGTAGTGGCATCGGATGGGAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTACCAGCCAACAGAT1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CATCGGATGGGAGACACAATGGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCGAGCTATTTTTGTACC...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGTGTTGTGT--TTTGTTTTAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................CGGATGGGAGACACAATGGCGTACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGATGGTCGAGCTATTTTTGT..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGATGGTCGAGCTATTTTTGTAC............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGTTGTGT--TTTGTTTTAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................GGCATCGGATGGGAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGGATGGGAGACACAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GAGACACAATGGCGTACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................GGCATCGGATGGGAGACACAATGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACTTGCCATGATGGTCGAGC.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATTTTTGTACCAGCC.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGATGGTCGAGCTATTTTTG...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTGT--TTTGTTTTAGA.................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCCAACTTGAAAAATGTTGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTT-----------ATACTTATAAACATTTAAAACACA----------------------------------------TAAATAGGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAG--------------------------------------------AAAAAC----------------TCTTA--------------------------------------------------------------------------------------------------------------------------------------------ACTGAAAACTATCTTCTGTGTTGTGC--TTTGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCGAGCTATTTTT................1812.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTGCCATGATGGTCGAGCT......................2312.00200200000000000000
......................CATCGGATGGGAGACACAATGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTACTTGCCATGATGGTCGAGCT......................2711.00101000000000000000
.................TGTGGCATCGGATGGGAGACACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTACTTGCCATGATGGTCGAGC.......................2511.00101000000000000000
.......................ATCGGATGGGAGACACAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCCATGATGGTCGAGC.......................2011.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCTATTTTTGTACCAGCCAACAGA.2811.00100000001000000000
droSec2
TCCAACTTGAAAAATGTTGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTT-----------ATACTTTTAAACATTTA-----------------------------------------------------GCTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAG--------------------------------------------AAAAAC----------------TCTTA--------------------------------------------------------------------------------------------------------------------------------------------ACTGAAAACTATCTTCTGTGTTGTGT--TTCGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............AATGTTGTGGCATCGGATGGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCATGATGGTCGAGC.......................1911.0011000
droYak3
TCCAACTTGAAAAATGTTGTGGCATCGGATGGGCGGCACAATGGCGTACGGTATGTG-----------GTACTTTTAAACATT--AAATTTA----------------------------------------TACATAGGTACTTATACTAAGGTGTTGTAGTCACTAAAGTTTGTTTAAGTAAGCTAACTTTATTTTCCCATTATTC---------------------------------------------------------------------------AAAATTCC----------------------------------------------------------------------------------------ATAT----------------TCTCT--------------------------------------------------------------------------------------------------------------------------------------------ACTAAATACTAGCTTTTGTGTTCTGTA-TTTTTTTTAGCTTATTTACTTGCCACGATGGTCGAGCTATTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................ATGGGCGGCACAATGGCGTACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............GTTGTGGCATCGGATGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTTACTTGCCACGATGGT............................2311.00101000000000
....ACTTGAAAAATGTTGTGGCATCGGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTCTGTA-TTTTTTTG....................................................2130.33100100000000
droEre2
TCCAACTTGAAAAATGTTGTGGCATCGGATGGGAGACACAATGGCGTACGGTATGTC-----------ATACTTTTAAACATTTAAAAAACA----------------------------------------AAA----GTATTTTTACTAAGTAGTTGTAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGAGTTAAAGCATGGTAATTAGCTTGTTAATTATTTTTCGATTTGCAAGAAA-------------------TTTTC--------------------------------------------------------------------------------------------------------------------------------------------CCCAAAAACTATCTTTTGTTGTCTGTA--TTGTTTTAGCTTATTTACTTGCCATGATGGTCGAGCTATTTTTGTACCAGCCAACAGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................GATGGGAGACACAATGGCGTACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTGTA--TTGTTTTAG..................................................1911.0011000000

Generated: 05/16/2015 at 08:51 PM