dvi_11707

CDS [Dvir\GJ22057-cds]; exon [dvir_GLEANR_737:6]; exon [dvir_GLEANR_737:5]; CDS [Dvir\GJ22057-cds]; intron [Dvir\GJ22057-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

CGCGAGCACGAGCCACCGTATAACCCAGATCCTTAGCGTTACCGATCTTTCATTTTATAATAATAAAAGTTCTCGTTAATAGTGTAGGGTAAATAAAGCATACGGCACTAAAATATGTGTTCACTTTATAGTATTAAATACTTGTGTCAAAATCAACATTTATAAATTTTTTTTTTAATTTACATAATTGACAGCAATTTTATTATAAGACAATGGAAAGAAAATCATTTGGTTTTGCACTTTTTATCACTATTTACACTATTATTAGAAATGCCT **********************************************************************************************************************************................................((((((....(((((.((.(((....))).)).)))))....)))))).*************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	M047 female body	SRR060656 9x160_ovaries_total	SRR060672 9x160_females_carcasses_total	SRR060680 9xArg_testes_total	SRR060689 160x9_testes_total	SRR060666 160_males_carcasses_total	SRR060686 Argx9_0-2h_embryos_total	SRR060669 160x9_females_carcasses_total	SRR060685 9xArg_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total
CGCGAGCGCGAGCCACCGTAT...............................................................................................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TTCACTTTATAGTATTAAATA........................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................ATAAGACAATGGAAAGAAAAT...................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................CTTAGCGTTACCGATCTTTCA................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...........................GATCCTTAGCGTTACCGATCT....................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CCCAGATCCTTAGCGTTACC.........................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGACAATGGGGAGAAAATCAT................................................	21	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CACTCTTTATCACTATCTTCAC.................	22	3	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................ACTCTTTATCACTATCTTCACTA...............	23	3	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
....AGCAGGAGGCACCGTATA..............................................................................................................................................................................................................................................................	18	2	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................AAATATGTGTGCGATTTATAG.................................................................................................................................................	21	3	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0
..........................AGATCCTTAGTGTTACCCG.......................................................................................................................................................................................................................................	19	3	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................AAAGTACTCGTTAATAATG................................................................................................................................................................................................	19	2	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0
..................................AGCGTTACCGGTTTCTCATT..............................................................................................................................................................................................................................	20	3	16	0.06	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................ACAAAAGTACTCGTTAAT....................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12963:13989383-13989658 -	dvi_11707	GCGCTCGTGCTCGGT---GGCATATTGGGTCTAGGAATCGCAATGGCTAGAAAGTAAAATA-TTATTATTTTCAAGAGCA---ATTATCACATCCCATT--------TATTTCGTATGC-CGTGATTTTATACAC--------------------------------------A------AGTGAAATATCATAATTTATGAA-----------------------------------------------------------------CACAGTTTT---------------------------AGTTG-----TA----------------------AATATTTAAA----------AA-AA-AAATTA------------AATGTATTAACTGTCGTT---------------AAA-----ATA-ATAT--TC------TGTTA----CCTTTCTTTTAGTAAACCAAAACGTGAAAAATAGTGATA-AAT---GTGATAATAATC-TTTACGGA
droMoj3	scaffold_6500:29513154-29513428 -		GCTCTTGTGCTTGGT---GGAATTTTGGGCCTAGGAATTGCGATGGCTAGAAAGTAAACTA-TAATT---TTTAATCCCGACTATTC-CGCATCCCACT--------TATTTCCAAAGA-CTA---TATTATCAC--------------------------------------A------AAACAATGATCATTATTTATA-------------------------------------------------------------------AACAGATTT-------------------AG-----ATG-TAAATACTT----------------------TATATT--TA----------TA-TT-AAATTA------------AATGTATTAACTGTCGTT---------------AAA-----ATA-TT--------TCTCTTATA----CTTTTCTTATAGTAAACAAAAACGCGATAAATAGTGTAAAAAT---ATGATA-GAGCT-CTTACGGA
droGri2	scaffold_15126:1852481-1852734 +		GCTCTGGTGCTTGGT---AGCATCATAGGACTTGGAATCGCAATGGCTAGAAAGTAAAATG-TTCTTGTTTTAAATTGCA----TTA-CTCATCACATTGGTATTTTGATTTCAAATGCACGAGTCTTTACATATATATAAAATTACAAATC-------------------------------------TCATTATTTACATA-----------------------------------------------------------------GAAAATTTC---------------------------------------------AGGTGTAATTT-------TATT--TA----------TT-TA-AAATTA------------AATGCTAAA--------------------------------ATA-AT--CA----ATT-TCTTCCCATTTTTTTATGTAGTAAACAAAAA-------AATAGTGAAA---------------------------A
droWil2	scf2_1100000004909:11339989-11340045 -		GTTCTATTCATGGCCTTAGGGCTACTGGGAATGGGCTTGGCTATGGTCAGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_493:2462-2733 -		GCCCTTGTGCTGGGC---GGCATTTTGGGACTAGGAATCGCAATGGCTAGAAAGTAATGGAACAGTT---ATTTATCACAACAATAA-------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTTCCATTAAATAATTTGATTGA-------------------------------AAAAAAGACAAAAACATGCCGA---CTAAAAAAAACCAGGAAAAATTTTTATT-GTAATCATT----------CT-TT-ACATTAAATTC------------TTAAACTATCCT---------------GATATTAATGA--------AGTATGTCTTATG---ATTTTTTTTGTAGTAAACAAAAGCGGGATAAATAGTGAAA--------------CATCT-CTTCCCCA
droPer2	scaffold_16:242987-243258 -		GCCCTTGTGCTGGGC---GGCATTTTGGGACTAGGAATCGCAATGGCTAGAAAGTAATGGAACAGTT---ATTTATCACAACAATAA-------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTTCCATTAAATAATTTAATTGA-------------------------------AAAAAAGACAAAAACATGCCGA---CTAAAAAAAACCAGGAAAAATTTTTATT-GTAATCATT----------CT-TT-ACATTAAATTC------------TTAAACTATCCT---------------GATATTAATGA--------AGTATGTCTTATG---ATTTTTTTTGTAGTAAACAAAAGCGGGATAAATAGTGAAA--------------CATCT-CTTCCCCA
droAna3	scaffold_13230:1053274-1053478 +		GCCCTTGTTCTTGGT---GGAATTTTGGGATTAGGATTTGCTATGGCTCGAAAGTAATATA-CATTT---ATT-------------------------------------------------------TTTTTA----TTAATAAATAAATC-------------------------------------TAAT----------------------------------------------------------------------------------------------------------------------------------------------------------T----------TA-AT-AAATTA------------AATGTATTAGTTTCAGTT---------------TAA------TAAATAT--TT--TTTATTTTG----TATTTTTTGTAGTAAGCAAAAGAGGGATAAAAAATGAAGCTGTTCCATGA-AGCTGTT-TTTACAGG
droBip1	scf7180000395449:7598-7825 +		GCACTTGTTCTTGGT---GGAATTTTGGGATTAGGATTTGCTATGGCTCGAAAGTAATATA-CATAT--------------------------------------------------GTACATTTATTTTCTTA--------------------------------------------------------------------------------------------------------------AATTTATTGT---------------------------------------------------GAC------------------AAAATCTATATT-GAATCAGTT----------AT-AT-AAATTA------------AATGTATTAGTTACAGTT---------------GTAA-----TAAATA----ATACGTTTTATTTTAAATATTTTTTTAGTAAGCAAAAGCGGGATAAACCATAAT-----TCCA-CACCGCGGTT-TTTACGGG
droKik1	scf7180000299871:7864-8100 -		GCTCTTGTACTCGGT---GGCATATTGGGACTAGGAATCGCTATGGCTAGGAAGTAATAAA-GCTTA-----------------------------------------------------------TCTTATTA-------------------TTTAGTTTGTGAATTCGTTCA------AAACAC-------------------------------------------------------------------TTATCACGATGTATTTAA---------------------------------A----------------------------GTATTAA-------GATATATTACTTA-TAAAAATTA------------AATGTAATG--------------------TTTATTTTTAATGAA-CT--TGA-------ATTTA----TTTCTCTTGTAGTAAACCAAAACGGGAGAAATAATGTA----------ATCAACGGTTTTGTGCGGA
droFic1	scf7180000454171:4730-4950 +		GCGCTTGTACTTGGC---GGAATATTGGGACTAGGCATTGCTATGGCTAGAAAGTAATAAT-CTTTT-------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTTAATTAATTCATT-------------------------------------------------TTCC---AATAATA----------ATTAGCTA------------------AAATTATTATT-GA-----------------------AAATTAAATT------------AAAA--ATTTCGTTATAATAGCTACC---ATACTAATAC--------AAC-------TCG----TTTATTTTTTAGTAAACAAAAAAGGGAAAAATAGTA-T----------GTTAATA-CT-TTTACGGA
droEle1	scf7180000488516:7352-7582 +		GCCCTTGTACTAGGT---GGAATATTGGGACTAGGCTTTGCTATGGCTAGAAAGTAATATA-AAATA------------------------------------------------------------------------------AGATGACCTATATT-----------TTCA------AA------------------------------------ACTA---ATT----------------------TTAAGATATCG------------------------------------------AAG-TGATTAGTT----------------------AT-------GATGCAATCCTTT-TT-AAATTTAATTTTTATCAG----------------------------GTTAAATTTTAATAAA-AT--TA----TTAATTTTG-------CATTTTTAGTAAACAAAAACGGGAGAAATAGTGAAA---------ATCGTCATAT-TTTATGGA
droRho1	scf7180000770186:1972-2197 -		GCCCTCGTACTGGGT---GGAATATTGGGACTAGGCATTGCTATGGCAAAGAAGTAATATT-AAAAA-----------CA-----------------------------------------------------------------ATATATCATATATT-----------TAAAAAAATAAAATAA-------------------------------------------------------------------TGATAACGAAGTAGT------------------------------------A----------------------------GTATTAT-------GATCCAATCCGAT-TG-AAATTAAATTTTCAATAT----------------------------TTGAAATATTAATAA--------AATGTGTCTTTTG------CATTTTATAGTAAACAAAAACGAGAGAAAAAATGAA----------AT-------C-TTTACATT
droBia1	scf7180000301234:1641-1819 +		GCCCTCGTACTTGGT---GGAATATTGGGACTGGGCATTGCTTTGGCTAGAAAGTAATTTT-GAATA----------------------------------------------------------------------------------------------------------------------------------------A-----TGTTTT--CCTGA-AAATA-------------------------------------------------TTTTCTTAAAAGAA----------ATCTGTTATA--------------------------------------------------------------------------------TCTGT------------TATC---ATA---------------TAT-------TTG---TTTCTTTTTTTAGTAAACAAAAGCGGGAGAAATAATAAA----------ATGCATAATT-TTTACGGA
droTak1	scf7180000415978:3049-3265 +		GCCCTAGTACTTGGC---GGGATATTGGGACTAGGCATTGCTATGGCTAGAAAGTAATATA-AAATA----------------------------------------------------------------------------------------------------------------------------------------ATATA----TTTTAATCTA------------------------------------------------------------------ACA----------ATCAGTTAAAATAGT----------------------AATAATTGTGATGCAACGTGTTGTT-TAATAATATCGACAATAG----------------------------CATAACTACTAATAA--------AATTT-------G---TTTTTACTTTTAGTAAACAGAAACGGGAGAAATAGTAAA----------ATCCAAAGTT-TTTACGGA
droEug1	scf7180000407524:11172-11258 +		GCCTTAGTTCTTGGC---GGAATATTGGGATTGGGAATTGCCATGGCCAGAAAGTAATAAT-AAATA----------------------------------------------------------------------------------------------------------------------------------------ATATATTTTTAAAAACGGAATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:1491223-1491454 -		GCTTTAGTACTTGGC---GGAATATTAGGACTTGGCATTGCTATGGCTAGAAAGTAATATT-TTATA----------------------------------------------------------------------------------------------------------------------------------------CCAACACGTTTTTAACCGA-CAATG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGAAAATTA----------------------AATATTTATG----------AT-TT-AAATTAAATCTACATTGA----------------------------CTTAATTATTAATGC--------TATGTGTACATTG----TTTATTTTTTAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCACCACTA-TTTAAGGA
droSim2	2r:2451060-2451292 -	dsi_6813	GCTTTAGTACTTGGC---GGAATATTGGGACTTGGCATTGCTATGGCTAGAAAGTAATATA-TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAACCGAACAATG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGATAATTA----------------------AATATTTATC----------AT-TT-AAATTAAATCCACAGTCA----------------------------CTAAATTATTAATGC--------TATGTGTACATTG----TTTATTTTTTAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCACCACTA-TTTATGGA
droSec2	scaffold_26:121031-121263 -		GCTTTAGTACTTGGC---GGAATATTGGGACTTGGCATTGCTATGGCTAGAAAGTAATATA-TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAACCGAACAATG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGATAATTA----------------------AATATTTATC----------AT-TT-AAATTAAATCTACAGTCA----------------------------CTAAATTATTAATGC--------TATGTGTACATTG----TTTATTTTATAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCACCACTA-TTTACGGA
droYak3	v2_chr2L_random_001:340780-341005 -		GCTTTAGTACTTGGC---GGAATATTGGGACTTGGCATAGCTATGGCTAGAAAGTAATATT-TAATA----------------------------------------------------------------------------------------------------------------------------------------TTAAAACGTTTTTAACCGAACAATC-------------------------------------------------TTCTTTTAA-AACA----------A-TAATTGATAATTA----------------------AAGATTTATT----------AT-TT-AAATTAAAGCTACAGTGA----------------------------CCTAATTATTGATAC--------AATGTGT-CGTTG----TTTATTTTTTAGTAAACAAAAACGGGAGAAATAGCAAC----------GTCAACA-----CTAAGGA
droEre2	scaffold_4929:20912421-20912657 +		GCTTTGGTACTTGGC---GGAATATTGGGACTTGGCATTGCTATGGCTAGAAAGTAATATT-TAATA----------------------------------------------------------------------------------------------------------------------------------------ATAAAACGTTTTTAACCGAAACATG-------------------------------------------------TTCTTCTAGAAACAGTTGATG---ATCAGTTGATTATTA----------------------AAGATTTATA----------AT-TT-AAATTAAATCTACAGTGA----------------------------CCTAATTATTAATAC--------AATGTGTC----G---TTTTTTTTTTTAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCAACACTA-TTTAAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GCGCTCGTGCTCGGT---GGCATATTGGGTCTAGGAATCGCAATGGCTAGAAAGTAAAATA-TTATTATTTTCAAGAGCA---ATTATCACATCCCATT--------TATTTCGTATGC-CGTGATTTTATACAC--------------------------------------A------AGTGAAATATCATAATTTATGAA-----------------------------------------------------------------CACAGTTTT---------------------------AGTTG-----TA----------------------AATATTTAAA----------AA-AA-AAATTA------------AATGTATTAACTGTCGTT---------------AAA-----ATA-ATAT--TC------TGTTA----CCTTTCTTTTAGTAAACCAAAACGTGAAAAATAGTGATA-AAT---GTGATAATAATC-TTTACGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................TGC-CGTGATTTTATACAC--------------------------------------A------AGTGAAATATCATAATTTATGAA-----------------------------------------------------------------C........................................................................................................................................................................................................................................................	43	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0
.........................TGGGTCTAGGAATCGCAATGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTCTAGGAATCGCAATGGCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GGGTCTAGGAATCGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CTCGGT---GGCATATTGGGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAATCGCAATGGCTAGAAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GCA---ATTATCACATCCCATT--------TATTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGC-CGTGATTTTATACAC--------------------------------------A------AGTGAAATATCATAATTTATGAA-----------------------------------------------------------------CA.......................................................................................................................................................................................................................................................	44	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TATCATAATTTATGAA-----------------------------------------------------------------CACAGT...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CATATTGGGTCTAGGAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TTTATACAC--------------------------------------A------AGTGAAATAT.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TGC-CGTGATTTTATACAC--------------------------------------A------AGTGAAATATCATAATTTATGA...........................................................................................................................................................................................................................................................................................................................	41	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............T---GGCATATTGGGTCTAGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................C--------------------------------------A------AGTGAAATATCATAATTTA..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTGGGTCTAGGAATCGCAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTCTAGGAATCGCAATGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CACATCCCATT--------TATTTCGTATGC-CGTGA........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGGGTCTAGGAATCGCAATGGCTAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATTGGGTCTAGGAATCGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ATCGCAATGGCTAGAAAGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGTGAAAAATAGTGATA-...........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................ATTTTCAAGAGCA---ATTATCACATCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCTCTTGTGCTTGGT---GGAATTTTGGGCCTAGGAATTGCGATGGCTAGAAAGTAAACTA-TAATT---TTTAATCCCGACTATTC-CGCATCCCACT--------TATTTCCAAAGA-CTA---TATTATCAC--------------------------------------A------AAACAATGATCATTATTTATA-------------------------------------------------------------------AACAGATTT-------------------AG-----ATG-TAAATACTT----------------------TATATT--TA----------TA-TT-AAATTA------------AATGTATTAACTGTCGTT---------------AAA-----ATA-TT--------TCTCTTATA----CTTTTCTTATAGTAAACAAAAACGCGATAAATAGTGTAAAAAT---ATGATA-GAGCT-CTTACGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTAAAAAT---ATGATA-GAGCT-........	22	1	1.00	1	0	0	0	0	0	1
..............................CTAGGAATTGCGATGGCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................CCTAGGAATTGCGATGGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................TTA------------AATGTATTAACTGTCGTT---------------AA....................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................TTTTGGGCCTAGGAATTGCGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................ATA-------------------------------------------------------------------AACAGATTT-------------------AG-----ATG-TA................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT---ATGATA-GAGCT-CTTACGGA	23	1	1.00	1	0	0	0	0	0	1
.........CTTGGT---GGAATTTTGGGCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droGri2

GCTCTGGTGCTTGGT---AGCATCATAGGACTTGGAATCGCAATGGCTAGAAAGTAAAATG-TTCTTGTTTTAAATTGCA----TTA-CTCATCACATTGGTATTTTGATTTCAAATGCACGAGTCTTTACATATATATAAAATTACAAATC-------------------------------------TCATTATTTACATA-----------------------------------------------------------------GAAAATTTC---------------------------------------------AGGTGTAATTT-------TATT--TA----------TT-TA-AAATTA------------AATGCTAAA--------------------------------ATA-AT--CA----ATT-TCTTCCCATTTTTTTATGTAGTAAACAAAAA-------AATAGTGAAA---------------------------A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................AATGCACGAGTCTTTACATATATATA.........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
..........................................ATGGCTAGAAAGTAAAATG-TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
........................ATAGGACTTGGAATCGCAATGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCATTTTTTTATGTAGT......................................................	21	1	1.00	1	0	1
.....................................TCGCAATGGCTAGAAAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0

droWil2

GTTCTATTCATGGCCTTAGGGCTACTGGGAATGGGCTTGGCTATGGTCAGAAAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

GCCCTTGTGCTGGGC---GGCATTTTGGGACTAGGAATCGCAATGGCTAGAAAGTAATGGAACAGTT---ATTTATCACAACAATAA-------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTTCCATTAAATAATTTGATTGA-------------------------------AAAAAAGACAAAAACATGCCGA---CTAAAAAAAACCAGGAAAAATTTTTATT-GTAATCATT----------CT-TT-ACATTAAATTC------------TTAAACTATCCT---------------GATATTAATGA--------AGTATGTCTTATG---ATTTTTTTTGTAGTAAACAAAAGCGGGATAAATAGTGAAA--------------CATCT-CTTCCCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................GGCATTTTGGGACTAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..................GGCATTTTGGGACTAGGAATCGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGATAAATAGTGAAA--------------CATCT-C.......	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................ATTTTGGGACTAGGAATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTAGTAAACAAAAGCGG..........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................AATGGCTAGAAAGTAATGGAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....TTGTGCTGGGC---GGCATTTTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACCAGGAAAAATTTTTATT-..................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GA---CTAAAAAAAACCAGGAAAAATTTTT......................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ATTC------------TTAAACTATCCT---------------GATATTAATGA--------AA..................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATAGTGAAA--------------CATCT-CTTCCCC.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGTAAACAAAAGCGGG.........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TTTTGGGACTAGGAATCGCAATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0

droPer2

GCCCTTGTGCTGGGC---GGCATTTTGGGACTAGGAATCGCAATGGCTAGAAAGTAATGGAACAGTT---ATTTATCACAACAATAA-------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTTCCATTAAATAATTTAATTGA-------------------------------AAAAAAGACAAAAACATGCCGA---CTAAAAAAAACCAGGAAAAATTTTTATT-GTAATCATT----------CT-TT-ACATTAAATTC------------TTAAACTATCCT---------------GATATTAATGA--------AGTATGTCTTATG---ATTTTTTTTGTAGTAAACAAAAGCGGGATAAATAGTGAAA--------------CATCT-CTTCCCCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................GGCATTTTGGGACTAGGAATCGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..............................CTAGGAATCGCAATGGCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................ATTTTGGGACTAGGAATCGCAATGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTGAAA--------------CATCT-CTTCCC..	22	1	1.00	1	0	1	0	0	0	0
........................................................................TTATCACAACAATAA-------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTTCCA........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0

droAna3

GCCCTTGTTCTTGGT---GGAATTTTGGGATTAGGATTTGCTATGGCTCGAAAGTAATATA-CATTT---ATT-------------------------------------------------------TTTTTA----TTAATAAATAAATC-------------------------------------TAAT----------------------------------------------------------------------------------------------------------------------------------------------------------T----------TA-AT-AAATTA------------AATGTATTAGTTTCAGTT---------------TAA------TAAATAT--TT--TTTATTTTG----TATTTTTTGTAGTAAGCAAAAGAGGGATAAAAAATGAAGCTGTTCCATGA-AGCTGTT-TTTACAGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................ATTTTGGGATTAGGATTTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................AATTTTGGGATTAGGATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...................GAATTTTGGGATTAGGATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTAAGCAAAAGAGGGAT.......................................	20	1	1.00	1	0	0	0	0	1	0
GCCCTTGTTCTTGGT---GGAATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......GTTCTTGGT---GGAATTTTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................TGGGATTAGGATTTGCTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................TTAGGATTTGCTATGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGAGGGATAAAAAAT................................	20	1	1.00	1	0	1	0	0	0	0
......GTTCTTGGT---GGAATTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAAGAGGGATAAAAA..................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTAAGCAAAAGAGGGAT.......................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GCACTTGTTCTTGGT---GGAATTTTGGGATTAGGATTTGCTATGGCTCGAAAGTAATATA-CATAT--------------------------------------------------GTACATTTATTTTCTTA--------------------------------------------------------------------------------------------------------------AATTTATTGT---------------------------------------------------GAC------------------AAAATCTATATT-GAATCAGTT----------AT-AT-AAATTA------------AATGTATTAGTTACAGTT---------------GTAA-----TAAATA----ATACGTTTTATTTTAAATATTTTTTTAGTAAGCAAAAGCGGGATAAACCATAAT-----TCCA-CACCGCGGTT-TTTACGGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTCTTGTACTCGGT---GGCATATTGGGACTAGGAATCGCTATGGCTAGGAAGTAATAAA-GCTTA-----------------------------------------------------------TCTTATTA-------------------TTTAGTTTGTGAATTCGTTCA------AAACAC-------------------------------------------------------------------TTATCACGATGTATTTAA---------------------------------A----------------------------GTATTAA-------GATATATTACTTA-TAAAAATTA------------AATGTAATG--------------------TTTATTTTTAATGAA-CT--TGA-------ATTTA----TTTCTCTTGTAGTAAACCAAAACGGGAGAAATAATGTA----------ATCAACGGTTTTGTGCGGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCGCTTGTACTTGGC---GGAATATTGGGACTAGGCATTGCTATGGCTAGAAAGTAATAAT-CTTTT-------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTTAATTAATTCATT-------------------------------------------------TTCC---AATAATA----------ATTAGCTA------------------AAATTATTATT-GA-----------------------AAATTAAATT------------AAAA--ATTTCGTTATAATAGCTACC---ATACTAATAC--------AAC-------TCG----TTTATTTTTTAGTAAACAAAAAAGGGAAAAATAGTA-T----------GTTAATA-CT-TTTACGGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCCTTGTACTAGGT---GGAATATTGGGACTAGGCTTTGCTATGGCTAGAAAGTAATATA-AAATA------------------------------------------------------------------------------AGATGACCTATATT-----------TTCA------AA------------------------------------ACTA---ATT----------------------TTAAGATATCG------------------------------------------AAG-TGATTAGTT----------------------AT-------GATGCAATCCTTT-TT-AAATTTAATTTTTATCAG----------------------------GTTAAATTTTAATAAA-AT--TA----TTAATTTTG-------CATTTTTAGTAAACAAAAACGGGAGAAATAGTGAAA---------ATCGTCATAT-TTTATGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCCTCGTACTGGGT---GGAATATTGGGACTAGGCATTGCTATGGCAAAGAAGTAATATT-AAAAA-----------CA-----------------------------------------------------------------ATATATCATATATT-----------TAAAAAAATAAAATAA-------------------------------------------------------------------TGATAACGAAGTAGT------------------------------------A----------------------------GTATTAT-------GATCCAATCCGAT-TG-AAATTAAATTTTCAATAT----------------------------TTGAAATATTAATAA--------AATGTGTCTTTTG------CATTTTATAGTAAACAAAAACGAGAGAAAAAATGAA----------AT-------C-TTTACATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCCTCGTACTTGGT---GGAATATTGGGACTGGGCATTGCTTTGGCTAGAAAGTAATTTT-GAATA----------------------------------------------------------------------------------------------------------------------------------------A-----TGTTTT--CCTGA-AAATA-------------------------------------------------TTTTCTTAAAAGAA----------ATCTGTTATA--------------------------------------------------------------------------------TCTGT------------TATC---ATA---------------TAT-------TTG---TTTCTTTTTTTAGTAAACAAAAGCGGGAGAAATAATAAA----------ATGCATAATT-TTTACGGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCCTAGTACTTGGC---GGGATATTGGGACTAGGCATTGCTATGGCTAGAAAGTAATATA-AAATA----------------------------------------------------------------------------------------------------------------------------------------ATATA----TTTTAATCTA------------------------------------------------------------------ACA----------ATCAGTTAAAATAGT----------------------AATAATTGTGATGCAACGTGTTGTT-TAATAATATCGACAATAG----------------------------CATAACTACTAATAA--------AATTT-------G---TTTTTACTTTTAGTAAACAGAAACGGGAGAAATAGTAAA----------ATCCAAAGTT-TTTACGGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCCTTAGTTCTTGGC---GGAATATTGGGATTGGGAATTGCCATGGCCAGAAAGTAATAAT-AAATA----------------------------------------------------------------------------------------------------------------------------------------ATATATTTTTAAAAACGGAATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCTTTAGTACTTGGC---GGAATATTAGGACTTGGCATTGCTATGGCTAGAAAGTAATATT-TTATA----------------------------------------------------------------------------------------------------------------------------------------CCAACACGTTTTTAACCGA-CAATG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGAAAATTA----------------------AATATTTATG----------AT-TT-AAATTAAATCTACATTGA----------------------------CTTAATTATTAATGC--------TATGTGTACATTG----TTTATTTTTTAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCACCACTA-TTTAAGGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................TATTAGGACTTGGCATTGCTATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAATAGTAAC----------GTCACCA............	20	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TACTTGGC---GGAATATTAGGACTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AATATTAGGACTTGGCATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TTAAAAACA----------AGCAGTTGAAAATTA----------------------AAT................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATTAGGACTTGGCATTGCTATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TACTTGGC---GGAATATTAGGACTTGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GGAATATTAGGACTTGGCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......GTACTTGGC---GGAATATTAGGACTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATTAGGACTTGGCATTGCTATGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATAGTAAC----------GTCACCACTA-........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATTA----------------------AATATTTATG----------AT-TT-A........................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTACATTG----TTTATTTTGA.........................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AAATTA----------------------AATATTTATG----------AT-TA-.........................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCTTTAGTACTTGGC---GGAATATTGGGACTTGGCATTGCTATGGCTAGAAAGTAATATA-TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAACCGAACAATG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGATAATTA----------------------AATATTTATC----------AT-TT-AAATTAAATCCACAGTCA----------------------------CTAAATTATTAATGC--------TATGTGTACATTG----TTTATTTTTTAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCACCACTA-TTTATGGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................TA-TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAACCGAA......................................................................................................................................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	0	0	3	2	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AACA----------AGCAGTTGATAATTA----------------------AATATT.............................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAAACAAAAACGGGAGA......................................	21	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................TA-TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAACCGA.......................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....TAGTACTTGGC---GGAATATTGGGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
...TTAGTACTTGGC---GGAATATTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTTAGTAAACAAAAACGGGA........................................	25	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATGC--------TATGTGTAC...........................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGA...............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................GGCATTGCTATGGCTAGAAAGTAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TC----------AT-TT-AAATTAAATCCACAGT.........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGTAAACAAAAACGGGAGA......................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATGC--------TATGTGTACATTG----TT.................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................TATTGGGACTTGGCATTGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGTAAC----------GTCACCA............	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTTAGTAAACAAAAACGGGAGA......................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC----------GTCACCACTA-TTTATGGA	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................TTGGGACTTGGCATTGCTATGGCTAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................TTGCTATGGCTAGAAAGTAATATA-TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................TATTGGGACTTGGCATTGCTATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........CTTGGC---GGAATATTGGGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....TAGTACTTGGC---GGAATATTGGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................ATTGGGACTTGGCATTGCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................TTGGGACTTGGCATTGCTATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................TGGGACTTGGCATTGCTATGGCTAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............GC---GGAATATTGGGACTTGGCATTGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........TGGC---GGAATATTGGGACTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................TA-TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAAC..........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTTAGTAAACAAAAACGGGA........................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....TAGTACTTGGC---GGAATATTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................ATATTGGGACTTGGCATTGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................TG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGATAAT...........................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAAACAAAAACGGGAGAA.....................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTAAC----------GTCACCACTA-TTTATGGA	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTTAGTAAACAAAAACGGGAGAA.....................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........ACTTGGC---GGAATATTGGGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGGGACTTGGCATTGCTATGGCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......GTACTTGGC---GGAATATTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTTAGTAAACAAAAACGGGAGAAA....................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...TTAGTACTTGGC---GGAATATTGGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AACAATG-------------------------------------------------TTCTTTTAAAAACA----------AGCAG...................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGTAAACAAAAACGGGA........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTTAGTAAACAAAAACGGGAGA......................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAACCGA.......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TGCTATGGCTAGAAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GCTTTAGTACTTGGC---GGAATATTGGGACTTGGCATTGCTATGGCTAGAAAGTAATATA-TTATA----------------------------------------------------------------------------------------------------------------------------------------CAAAAACGTTTTTAACCGAACAATG-------------------------------------------------TTCTTTTAAAAACA----------AGCAGTTGATAATTA----------------------AATATTTATC----------AT-TT-AAATTAAATCTACAGTCA----------------------------CTAAATTATTAATGC--------TATGTGTACATTG----TTTATTTTATAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCACCACTA-TTTACGGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................ATATTGGGACTTGGCATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0
.........CTTGGC---GGAATATTGGGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACGGGAGAAATAGT................................	18	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CA----------------------------CTAAATTATTAATGC--------TATG................................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATGC--------TATGTGTACATT........................................................................	21	1	1.00	1	0	0	1	0
......GTACTTGGC---GGAATATTGGGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
.........CTTGGC---GGAATATTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................AAACA----------AGCAGTTGATAATTA----------------------AATAT..............................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........................TTGGGACTTGGCATTGCTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.....................ATATTGGGACTTGGCATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
GCTTTAGTACTTGGC---GGAATATTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATAGTAAC----------GTCACCAC...........	20	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................CA----------AGCAGTTGATAATTA----------------------AATATTTA...........................................................................................................................................................................	25	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAACGGGAGAAATAGT................................	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAACGGGAGAAATAGTAAC----------...................	23	1	1.00	1	0	0	0	1
....................AATATTGGGACTTGGCATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

droYak3

GCTTTAGTACTTGGC---GGAATATTGGGACTTGGCATAGCTATGGCTAGAAAGTAATATT-TAATA----------------------------------------------------------------------------------------------------------------------------------------TTAAAACGTTTTTAACCGAACAATC-------------------------------------------------TTCTTTTAA-AACA----------A-TAATTGATAATTA----------------------AAGATTTATT----------AT-TT-AAATTAAAGCTACAGTGA----------------------------CCTAATTATTGATAC--------AATGTGT-CGTTG----TTTATTTTTTAGTAAACAAAAACGGGAGAAATAGCAAC----------GTCAACA-----CTAAGGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................TTGGGACTTGGCATAGCTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........TTGGC---GGAATATTGGGACTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............GGC---GGAATATTGGGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......GTACTTGGC---GGAATATTGGGACTTGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAACAAAAACGGGAGAA.....................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAAACGGGAGAAATA..................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAAC----------GTCAACA-----CTAAGGA	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TTTAACCGAACAATC-------------------------------------------------TTCTT...........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AACCGAACAATC-------------------------------------------------TTCTTTTAA-AACA----------A-T.....................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AAACGTTTTTAACCGAACAATC-------------------------------------------------TTCTTT..........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................ATATTGGGACTTGGCATAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ACAATC-------------------------------------------------TTCTTTTAA-AACA----------A-TAATTGA...............................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAAACGTTTTTAACCGAA......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TAAAACGTTTTTAACCGAAC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GCTTTGGTACTTGGC---GGAATATTGGGACTTGGCATTGCTATGGCTAGAAAGTAATATT-TAATA----------------------------------------------------------------------------------------------------------------------------------------ATAAAACGTTTTTAACCGAAACATG-------------------------------------------------TTCTTCTAGAAACAGTTGATG---ATCAGTTGATTATTA----------------------AAGATTTATA----------AT-TT-AAATTAAATCTACAGTGA----------------------------CCTAATTATTAATAC--------AATGTGTC----G---TTTTTTTTTTTAGTAAACAAAAACGGGAGAAATAGTAAC----------GTCAACACTA-TTTAAGGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................ATTGGGACTTGGCATTGCTATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
.......................ATTGGGACTTGGCATTGCTATGGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	0	0	1	0
....................................ATTGCTATGGCTAGAAAGTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAACGGGAGAAATAGTA...............................	22	1	1.00	1	0	0	0	0	1	0	0
.........................TGGGACTTGGCATTGCTATGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..TTTGGTACTTGGC---GGAATATTGGGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAACGGGAGAAATA..................................	19	1	1.00	1	0	0	0	1	0	0	0
..TTTGGTACTTGGC---GGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.......................ATTGGGACTTGGCATTGCTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................TTGGCATTGCTATGGCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................G-------------------------------------------------TTCTTCTAGAAACAGTTGATG---AT......................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................AACATG-------------------------------------------------TTCTTCTAGAAAC...................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........ACTTGGC---GGAATATTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....TGGTACTTGGC---GGAATATTGGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................ATATTGGGACTTGGCATTGCTATGGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................G---ATCAGTTGATTATTA----------------------AAGATTT............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ACAGTTGATG---ATCAGTTGATTAT...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................GACTTGGCATTGCTATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
....................................ATTGCTATGGCTAGAAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................G---ATCAGTTGATTATTA----------------------AAGATT.............................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dvi_11707

scaffold_12963:13989433-13989608 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######################---------------------------- GCGCTCGTGCTCGGTGGCATATTGGGTCTAGGAATCGCAATGGCTAGAAAGTAAAATATTATTATTTTCAAGAGCAATTATCACATCCCATTTATTTCGTATGCCGTGATTTTATACACAAGTGAAATATCATAATTTATGAACACAGTTTTAGTTGTAAATATTTAAAAAAAAAATTAAATGTATTAACTGTCGTTAAAATAATATTCTGTTACCTTTCTTTTAGTAAACCAAAACGTGAAAAATAGTGATAAATGTGATAATAATCTTTACGGA *************************************************************................................((((((....(((((.((.(((....))).)).)))))....)))))).**********************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060676 9xArg_ovaries_total	M047 female body	SRR060657 140_testes_total	SRR060668 160x9_males_carcasses_total	SRR060678 9x140_testes_total	SRR060683 160_testes_total	SRR1106720 embryo_8-10h	SRR1106723 embryo_12-14h	SRR060656 9x160_ovaries_total	SRR060661 160x9_0-2h_embryos_total	SRR060666 160_males_carcasses_total	SRR060667 160_females_carcasses_total	SRR060670 9_testes_total	SRR060672 9x160_females_carcasses_total	SRR060679 140x9_testes_total	SRR060681 Argx9_testes_total	SRR060688 160_ovaries_total	SRR1106725 embryo_14-16h	SRR1106730 embryo_16-30h	SRR060659 Argentina_testes_total	V053 head	SRR060669 160x9_females_carcasses_total	SRR060664 9_males_carcasses_total
.....................................................................................................TGCCGTGATTTTATACACAAGTGAAATATCATAATTTATGAAC....................................................................................................................................	43	0	1	4.00	4	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................TGGGTCTAGGAATCGCAATGGCT.......................................................................................................................................................................................................................................	23	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTCTAGGAATCGCAATGGCTAGA....................................................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAATCCCAATGGCTAGAAAGT................................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................GGGTCTAGGAATCGCAAT...........................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CTCGGTGGCATATTGGGTCT.......................................................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAATCGCAATGGCTAGAAAGT................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TACACAGGTGAAATATCATAAT............................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GCAATTATCACATCCCATTTATTTCG.................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGCCGTGATTTTATACACAAGTGAAATATCATAATTTATGAACA...................................................................................................................................	44	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TATCATAATTTATGAACACAGT...............................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................CATATTGGGTCTAGGAATCGC..............................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TTTATACACAAGTGAAATAT..................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGCCGTGATTTTATACACAAGTGAAATATCATAATTTATGA......................................................................................................................................	41	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............TGGCATATTGGGTCTAGGAAT.................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CAAGTGAAATATCATAATTTA.........................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................TTGGGTCTAGGAATCGCAATG..........................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................GTCTAGGAATCGCAATGGCT.......................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CACATCCCATTTATTTCGTATGCCGTGA.......................................................................................................................................................................	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGGGTCTAGGAATCGCAATGGCTAGAA...................................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGAAAAATGGTGATAAATGTG.................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATTGGGTCTAGGAATCGCAAT...........................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................ATCGCAATGGCTAGAAAGTAA..............................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AAAACGTGAAAAATAGTGATA.......................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAATCGCAATGGCTAGAAGGT................................................................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................ATTTTCAAGAGCAATTATCACATCCC...........................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAAAACATTCTGTTACCTT..........................................................	19	2	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGGGTCTCGGAATCGAAATG..........................................................................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................TAATATTGTCTTCCCTTTCTT......................................................	21	3	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................AGTTGGAAAAATTTAAAAAAAA......................................................................................................	22	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................AGTTGGAAAAATTTAAAAAA........................................................................................................	20	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................AAAAAAAATATTCTGTTAC.............................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

-7.4	-7.3	-7.2