ID:

dvi_11651

 Coordinate:

scaffold_12963:13839964-13840114 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.1

Flybase annnotation

exon [dvir_GLEANR_751:4]; CDS [Dvir\GJ22204-cds]; intron [Dvir\GJ22204-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGGAAACATTCCAAGCTTTAAGGTCTGCCTCAATTTTAACCTATCCTTAAATGGTTTTGGTTCAAGGTTTGCTTCCAATGTTCATTCCGGACTTGGAGCGGCTTGCTCCAAAGCTGGTTTCAATTCGCTTCTCCTTAATCCTCAATCTACGTATCATAAATTCCACTCCAATTTAATTCTCAAATATTTTTGCATTACAGTTGATTAATTTTTGGTCGCCCAACAAACTGATTGACATCGATGGCAAGGA
********************************************************************...................((((..(((((((.....)))))))..))))......................................*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 M027
male body		 SRR060671
9x160_males_carcasses_total
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060656
9x160_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 M028
head
 SRR060673
9_ovaries_total
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060657
140_testes_total
 SRR060683
160_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
............................................................................................CTTGGTGGGGCTTGCTCC............................................................................................................................................. 18 2 6 4.83 29 1 0 0 0 23 0 0 0 0 0 0 0 0 0 4 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GATTAACTTTTGGTCGCCC............................. 19 1 1 3.00 3 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAACTGATTGACATCGATGGC..... 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGATTAATTTTTGGTCGCC.............................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGACTTGGTGGGGCTTGCTC.............................................................................................................................................. 20 2 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCCCAACAAACTGATTGACATC........... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAACGTTGATTAATTTTTGGTC................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGAATGGTTTTGGTTCAAGGT...................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTTGCTTCCAATGTTCATTCC.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCCCAACAAACTGATTGACAT............ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCAACAAACTGATTGACATC........... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCCCAACAAACTGATTGACATC........... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCCGGACTTGGAGCGGCTTGCTCCAAA.......................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAACAAACTGATTGACATCGATGGCA.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACTGATTGACATCGATGGCAAG.. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGACTTGGTGGGGCTTGCTCT............................................................................................................................................. 21 3 3 1.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAACAAACTGATTGACATCGATTGC..... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAACAAACTGATTGACATCG.......... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAACTGATTGACATCGATGGCA.... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACAAACTGATTGACATCGATGG...... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACAAACTGATTGACATCGAT........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCAACAAACTGATTGACATCGATGGC..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GATTAATTTTTGGTCGCCCAACAAACTG.................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAACTGATTGACATCGAT........ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AATTTTTGGTCGCCCAACAAACTG.................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAACAAACTGATTGACATCGATGG...... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AACGTTGATTAACTTTTGGTCGCC.............................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACAAACTGATTGACATCGATGGC..... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTTTGGTTCGGGGTTTGCTTC............................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACTGATTGACATCGATGGCAAGGA 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGTTGATTAACTTTTGGTCGCCCAACA......................... 27 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCCCAACAAACTGATTGACATCG.......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAACTGATTGACATCGATGG...... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GATTAATTTTTGGTCGCC.............................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACAAACTGATTGACATCGATGGCA.... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGTTGATTAATTTTTGGTCGC............................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CATTCCGGACTTGGAGCGGCTT.................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAACTTTTGGTCGCCCAAC.......................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTAACTTTTGGTCGCCCAACA......................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CCGGACTTGGAGCGGCTTTCTC.............................................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAACGTTGATTAATTTTTGGTCGCC.............................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTGGTCGCCCAACAAACTGAT.................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTAATCCTCAATCTACGTATC............................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAACGTTGATTAATTTTTGGT.................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTGATTAACTTTTGGTCG................................ 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CAAACTGATTGACATCGATGGC..... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GCTTGGTGGGGCTTGCTCC............................................................................................................................................. 19 3 19 0.95 18 3 0 0 0 10 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................CGCCCAACAAACTGATTGG............... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AGGTTTGCTTCGAATGTTC....................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ACTGATTGACATCGATGTC..... 19 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................AGTGGCTTGTTCCAAAGTTGG..................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CTTGGTGGGGCTTGCTCCG............................................................................................................................................ 19 3 20 0.40 8 0 5 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................CTTGGTGCGGCTTGCTCT............................................................................................................................................. 18 2 6 0.33 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TGTTTGCATTACAGTTGTTTA........................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................GTTCATTCCGGAGAGGGAGC....................................................................................................................................................... 20 3 9 0.33 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
.............................................................................................TCGAAGCTGCTTGCTCCAAAG......................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GCTTGGAGGGGCTTGCTC.............................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CTTGGAGGGGCTTGCTCT............................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................CGGACTAAGAGCGGCTGGCTC.............................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGTTCATTAGTTTTTGGT.................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................GGACTTGGTGGGGCGTGCTC.............................................................................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ATTGACATCGATGTCAACGA 20 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................CTTGGAGGGGCTTGCTCTG............................................................................................................................................ 19 3 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................AACGTTGATTAACTTTTGGT.................................. 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATGGTTTAGGTAGAAGGT...................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CACCTTTGTAAGGTTCGAAATTCCAGACGGAGTTAAAATTGGATAGGAATTTACCAAAACCAAGTTCCAAACGAAGGTTACAAGTAAGGCCTGAACCTCGCCGAACGAGGTTTCGACCAAAGTTAAGCGAAGAGGAATTAGGAGTTAGATGCATAGTATTTAAGGTGAGGTTAAATTAAGAGTTTATAAAAACGTAATGTCAACTAATTAAAAACCAGCGGGTTGTTTGACTAACTGTAGCTACCGTTCCT
***********************************************************************************************...................((((..(((((((.....)))))))..))))......................................******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060659
Argentina_testes_total
 V053
head
 V047
embryo
 SRR1106729
mixed whole adult body
.......................................................................................GGCCTGAACCTCGCCGAACGA............................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGGGTTGTTTGACTAACTGTA............ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGTTTGACTAACTGTAGCTACCGTT... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................GTTGTTTGACTAACTGTAGCT......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................AGGTTACAAGTAAGGCCTGAA............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................ACGAAGGTTACAAGTAAGGC................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................TAGGAGTTAGATGCATAGTATT........................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................GGAGTTAGATGCATAGTATT........................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AGGAGTTAGATGCATAGTAT............................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................TAATCGAAGAGCAAGTAGGAGT.......................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCAGCGGGTTGTTTGACTGA................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AGAGGAATTAGGAGTTAGGTG.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................AGGTTACGAGTAAGGCCTGG............................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGAATTAGGAGTTAGATGCA.................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................GAACGAGGTTTCGACCAAAGT................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACTAATTAAAAACCAGCGG.............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAACCAGCGGGTTGTTTGAC.................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................TCCAGAAGGAGTTAAAATA................................................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
......................CCAGAAGGAGTTAAAATAAGA................................................................................................................................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................GACGGACGAGGTTTCGACCA.................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
................GCACTGCCAGACGGAGTTA........................................................................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................TCACCGAACAAGGTTTCAAC...................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAACTAATTAGAAACCC.................................. 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................AGGACTTAGTTGCATAGTT............................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................CAGACGGAGTTGAAA..................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:13839914-13840164 - dvi_11651 GTGGAAACATTCCAAGCTTTAAGGTCTGCCTCAATTTTAACCTATCCTTAAATGGTTTTGGTTCAAGGTTTGCTTCCAATGTTCATTCCGGACTTGGAGCGGCTTGCTCCAAAGCTGGTTTCAATTCGCTTCTCCTTAATCCTCAATCTACGTATC--ATAAATTCCACTCCAATTTAATTCTC--AA---ATATT-TT---TGCAT--------TACAGTTGATTAATTTTTGGTCGCCCAACAAA-CTGATTGACATCGATGGCAAGGA
droMoj3 scaffold_6500:5813439-5813503 + ATTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGT--------TCCAGCTGATCGACTTCTGGACGCCAAACAAG-CTGATCGACATCGATGGATCGGA
droGri2 scaffold_15126:6049349-6049436 + ACTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTA--T-------TG-TTTTGATTAATTGTCATTTTCAGTTGATTGACTTCTGGTCTCCCAACAAG-ATCATCGACATTGATGGCAAGGA
droWil2 scf2_1100000004577:1169532-1169601 - TCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCT--A---------------TCCAT--------TGCAGATGACAAACTATTGGT-GTCCCACACGTCTGAC---AACAGATAGAGAGAA
dp5 4_group3:4019860-4019936 + TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTGGA-TTTTCCTTTG--------CGTAGCTGATTGATTTTTGGTCCCCCAACAAA-CTGATCGATATCGATGGCAAGGA
droPer2 scaffold_1:5492704-5492780 + TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTGGA-TTTTCCTTTG--------CGTAGCTGATTGATTTTTGGTCCCCCAACAAA-CTGATCGATATCGATGGCAAGGA
droAna3 scaffold_12916:6083274-6083375 + AATCT------------------------------------------------------------------------------------------------------------------------------------------------AATCGTT--ATTAATTACA----AAAAT--TACTTATAT---ATACT-T----TACTT--------TATAGCTGATTGATTTCTGGAGTCCCAACAAA-CTGATTGATATCGATGGCAAGGA
droBip1 scf7180000396568:756919-756986 - ATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-T----GTCTT--------TGTAGCTGATTGATTTCTGGACTCCCAACAAA-CTGATCGACATTGATGGCAAGGA
droKik1 scf7180000302408:650069-650138 - ATTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------AT-TA----TACC--------ATTAGCTCATTGACTTCTGGACGCCTAACAAG-ATGATCGACATCGATGGTCAGGA
droFic1 scf7180000453924:285930-286003 - TCTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------AT---ACATA-TT----ATCT--------TCCAGCTGATTGACTTCTGGACGCCCAACAAG-CTGATCGACATCGATGGTCAGGT
droEle1 scf7180000490579:540311-540397 + ATATA---------------------------------------------------------------------------------------------------------------------------------------------------CGTTTA------------------------------ATCAAAAA-TTCTATTTCA--ATCCTCTTTAGATGAACAACTACTGGT-GTCCCACACGTTTGAT---CACTGAGGAGGTTGA
droRho1 scf7180000779970:31640-31692 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGATTGACTTCTGGACGGCCAACAAG-ATGATCGACATCGATGGCCAGGA
droBia1 scf7180000302261:148248-148307 - TAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------AATAGCTGATTGACTTCTGGACGCCCAACAAG-CTGATCGACATCGATGGCCAGGA
droTak1 scf7180000413208:73283-73362 - AATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACCA--AT---ATATA-TT----ATCT--------ATTAGCTTATTGACTTCTGGACGCCCAACAAG-CTGATCGACATCGATGGCCAGGA
droEug1 scf7180000409554:4169376-4169436 - TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT--------TCTAGCTTATTGACTTCTGGACGGCCAACAAG-ATGATCGACATCGATGGTCAGGA
dm3 chr2L:2372721-2372773 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGATTGACTTCTGGTCGCCCAACAAG-CTCATCGACATCGATGGCCAGGA
droSim2 2l:16369745-16369807 - ATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TT----TTCT--------CCAAGATGAACAATTACTGGT-GCCCAACGCGTCTGAT---CACCGAGGAGGTGGA
droSec2 scaffold_7:448647-448714 - ATTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAT-TT----TTCT--------CCAAGATGAACAATTACTGGT-GTCCAACGCGTCTGAT---CACCGAGGAGGTGGA
droYak3 2L:2355342-2355422 - AAGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTT--GC---ATGTTGTT----ATCT--------ACCAGCTGGTTGATTTCTGGACGCCCAACAAG-CTCATCGACATCGATGGCCAGGA
droEre2 scaffold_4929:2412196-2412248 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGATTGACTTCTGGACGCCCAACAAG-CTCATCGACATCGATGGCCAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTGGAAACATTCCAAGCTTTAAGGTCTGCCTCAATTTTAACCTATCCTTAAATGGTTTTGGTTCAAGGTTTGCTTCCAATGTTCATTCCGGACTTGGAGCGGCTTGCTCCAAAGCTGGTTTCAATTCGCTTCTCCTTAATCCTCAATCTACGTATC--ATAAATTCCACTCCAATTTAATTCTC--AA---ATATT-TT---TGCAT--------TACAGTTGATTAATTTTTGGTCGCCCAACAAA-CTGATTGACATCGATGGCAAGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................AAA-CTGATTGACATCGATGGC.....2112.002001100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TGATTAATTTTTGGTCGCC...............................1912.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CGCCCAACAAA-CTGATTGACATC...........2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................TTTGCTTCCAATGTTCATTCC......................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CGCCCAACAAA-CTGATTGACAT............2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CCAACAAA-CTGATTGACATC...........2011.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GCCCAACAAA-CTGATTGACATC...........2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................CAACAAA-CTGATTGACATCGATGGCA....2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................A-CTGATTGACATCGATGGCAAG..2211.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................CAACAAA-CTGATTGACATCG..........2011.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AAA-CTGATTGACATCGATGGCA....2211.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AACAAA-CTGATTGACATCGATGG......2311.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AACAAA-CTGATTGACATCGAT........2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CCAACAAA-CTGATTGACATCGATGGC.....2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GATTAATTTTTGGTCGCCCAACAAA-CTG....................2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AAA-CTGATTGACATCGAT........1811.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AATTTTTGGTCGCCCAACAAA-CTG....................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................CAACAAA-CTGATTGACATCGATGG......2411.001000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AACAAA-CTGATTGACATCGATGGC.....2411.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................A-CTGATTGACATCGATGGCAAGGA2411.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................GCCCAACAAA-CTGATTGACATCG..........2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AAA-CTGATTGACATCGATGG......2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GATTAATTTTTGGTCGCC...............................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AACAAA-CTGATTGACATCGATGGCA....2511.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................CATTCCGGACTTGGAGCGGCTT......................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTTGGTCGCCCAACAAA-CTGAT..................2211.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................TTAATCCTCAATCTACGTATC--.................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................CAAA-CTGATTGACATCGATGGC.....2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CGCCCAACAAA-CTGATTGG...............1920.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGT--------TCCAGCTGATCGACTTCTGGACGCCAAACAAG-CTGATCGACATCGATGGATCGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................GACTTCTGGACGCCAAACAAG-CT.....................2313.003300000
...........................................................................................................................................................................................................................GCTGATCGACTTCTGGACGC................................2013.003000003
......................................................................................................................................................................................................................................TCTGGACGCCAAACAAG-CTGAT..................2213.003200001
.................................................................................................................................................................................................................................CGACTTCTGGACGCCAAACAAG-CTGAT..................2712.002200000
.............................................................................................................................................................................................................................................GCCAAACAAG-CTGATCGAC..............1911.001000001
......................................................................................................................................................................................................................................................G-CTGATCGACATCGATGG......1811.001000001
...........................................................................................................................................................................................................................................................ATCGACATCGATGGATCGGA2011.001000001
................................................................................................................................................................................................................................................AAACAAG-CTGATCGACATCGATGG......2411.001100000
............................................................................................................................................................................................................................................CGCCAAACAAG-CTGATCGACATCGATG.......2711.001000001
................................................................................................................................................................................................................................................AAACAAG-CTGATCGACATCGATGGAT....2611.001100000
......................................................................................................................................................................................................................................TCTGGACGCCAAACAAG-CTGATCGA...............2511.001100000
................................................................................................................................................................................................................................................AAACAAG-CTGATCGACATCG..........2011.001000001
.................................................................................................................................................................................................................................CGACTTCTGGACGCCAAACAAG-C......................2311.001100000
...............................................................................................................................................................................................................................................CAAACAAG-CTGATCGACATCGATG.......2411.001100000
...........................................................................................................................................................................................................................GCTGATCGACTTCTGGACGCC...............................2111.001000001
....................................................................................................................................................................................................................................CTTCTGGACGCCAAACAAG-CTG....................2211.001100000
......................................................................................................................................................................................................................................TCTGGACGCCAAACAAG-CTG....................2011.001100000
....................................................................................................................................................................................................................................................AAG-CTGATCGACATCGATGGAT....2211.001000001
.....................................................................................................................................................................................................................................TTCTGGACGCCAAACAAG-CTGAT..................2311.001100000
.................................................................................................................................................................................................................................CGACTTCTGGACGCCAAACA..........................2011.001000010
....................................................................................................................................................................................................................................CTTCTGGACGCCAAACAAG-CTGATC.................2511.001100000
.......................................................................................................................................................................................................................................CTGGACGCCAAACAAG-CTGAT..................2111.001100000
..................................................................................................................................................................................................................................GACTTCTGGACGCCAAACAAG-CTGAT..................2611.001100000
.................................................................................................................................................................................................................................CGACTTCTGGACGCCAAACAAG-CT.....................2411.001100000
droGri2
ACTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTA--T-------TG-TTTTGATTAATTGTCATTTTCAGTTGATTGACTTCTGGTCTCCCAACAAG-ATCATCGACATTGATGGCAAGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................TTGATTGACTTCTGGTCTCCCA.............................2220.50110
.....................................................................................................................................................................................................................................................AG-ATCATCGACATTGATG.......1820.50110
...............................................................................................................................................................................................................................ATTGACTTCTGGTCTCCCA.............................1920.50110
.................................................................................................................................................................................................................................................AACAAG-ATCATCGACATTG..........1920.50110
.....................................................................................................................................................................................................................................TTCTGGTCTCCCAACAAG-ATCATC.................2420.50110
..........................................................................................................................................................................................................................................GTCTCCCAACAAG-ATCATCGAC..............2220.50110
droWil2
TCATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTCT--A---------------TCCAT--------TGCAGATGACAAACTATTGGT-GTCCCACACGTCTGAC---AACAGATAGAGAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTGGA-TTTTCCTTTG--------CGTAGCTGATTGATTTTTGGTCCCCCAACAAA-CTGATCGATATCGATGGCAAGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................CTGATTGATTTTTGGTCCCCCAACA..........................2511.0010100000000
..............................................................................................................................................................................................................................GATTGATTTTTGGTCCCCCAACAAA-CT.....................2711.0010010000000
..................................................................................................................................................................................................................................GATTTTTGGTCCCCCAAC...........................1811.0010010000000
......................................................................................................................................................................................................................................................A-CTGATCGATATCGATGGCAAG..2211.0010010000000
................................................................................................................................................................................................................................................CAACAAA-CTGATCGATATCGA.........2111.0010100000000
droPer2
TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTGGA-TTTTCCTTTG--------CGTAGCTGATTGATTTTTGGTCCCCCAACAAA-CTGATCGATATCGATGGCAAGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................GCTGATTGATTTTTGGTC..................................1819.009900000
..................................................................................................................................................................................................................................................ACAAA-CTGATCGATATCGATGGCAAG..2612.002200000
......................................................................................................................................................................................................................................TTTGGTCCCCCAACAAA-CTGATC.................2311.001010000
................................................................................................................................................................................................................................................CAACAAA-CTGATCGATATCGATGGC.....2511.001001000
............................................................................................................................................................................................................................................CCCCCAACAAA-CTGATCGATATCGATGGC.....2911.001100000
.........................................................................................................................................................................................................................................................TGATCGATATCGATGGCAAG..2011.001100000
.....................................................................................................................................................................................................................................................AA-CTGATCGATATCGATGG......1911.001100000
.............................................................................................................................................................................................................................................................CGATATCGATGGCAAGGA1811.001010000
.............................................................................................................................................................................................................................................CCCCAACAAA-CTGATCGATATCGAT........2511.001100000
....................................................................................................................................................................................................................................................AAA-CTGATCGATATCGATGGCAAGG.2511.001000001
droAna3
AATCT------------------------------------------------------------------------------------------------------------------------------------------------AATCGTT--ATTAATTACA----AAAAT--TACTTATAT---ATACT-T----TACTT--------TATAGCTGATTGATTTCTGGAGTCCCAACAAA-CTGATTGATATCGATGGCAAGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................GATTGATATCGATGGCAAGGA2113.003000030
............................................................................................................................................................................................................................CTGATTGATTTCTGGAGTCCC..............................2113.003010020
............................................................................................................................................................................................................................CTGATTGATTTCTGGAGTCCCAAC...........................2412.002110000
.................................................................................................................................................................................................................................................AACAAA-CTGATTGATATCGAT........2112.002000020
..............................................................................................................................................................................................................................GATTGATTTCTGGAGTCCC..............................1912.002100010
..............................................................................................................................................................................................................................GATTGATTTCTGGAGTCC...............................1812.002020000
................................................................................................................................................................................................................................................CAACAAA-CTGATTGATATC...........1911.001100000
................................................................................................................................................................................................................................................CAACAAA-CTGATTGATATCGATGG......2411.001001000
............................................................................................................................................................................................................................CTGATTGATTTCTGGAGTCC...............................2011.001000010
.................................................................................................................................................................................................................................................AACAAA-CTGATTGATATCGATGGCAAGG.2811.001000010
............................................................................................................................................................................................................................CTGATTGATTTCTGGAGTC................................1911.001001000
.......................................................................................................................................................................................................................................CTGGAGTCCCAACAAA-CC.....................1811.001010000
....................................................................................................................................................................................................................................................AAA-CTGATTGATATCGATGGCAAGGA2611.001000001
............................................................................................................................................................................................................................................GTCCCAACAAA-CTGATTGATAT............2211.001010000
................................................................................................................................................................................................................................................CAACAAA-CTGATTGATATCGATGGCAAG..2811.001000010
........................................................................................................................................................................................................................................................CTGATTGATATCGATGGCAAGGA2311.001000010
.......................................................................................................................................................................................................................................CTGGAGTCCCAACAAA-CTGATTGAT..............2511.001100000
............................................................................................................................................................................................................................................GTCCCAACAAA-CTGATTGATATCGAT........2611.001100000
.....................................................................................................................................................................................................................................................AA-CTGATTGATATCGATGGCAAGGA2511.001010000
......................................................................................................................................................................................................................................................A-CTGATTGATATCGATGGCAAGGA2411.001000010
.........................................................................................................................................................................................................................................................TGATTGATATCGATGGCAAGG.2111.001000010
.........................................................................................................................................................................................................................................GGAGTCCCAACAAA-CTGATT.................2011.001100000
droBip1
ATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-T----GTCTT--------TGTAGCTGATTGATTTCTGGACTCCCAACAAA-CTGATCGACATTGATGGCAAGGASizeHit CountTotal NormTotal
No Reads
droKik1
ATTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------AT-TA----TACC--------ATTAGCTCATTGACTTCTGGACGCCTAACAAG-ATGATCGACATCGATGGTCAGGASizeHit CountTotal NormTotal
No Reads
droFic1
TCTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------AT---ACATA-TT----ATCT--------TCCAGCTGATTGACTTCTGGACGCCCAACAAG-CTGATCGACATCGATGGTCAGGTSizeHit CountTotal NormTotal
No Reads
droEle1
ATATA---------------------------------------------------------------------------------------------------------------------------------------------------CGTTTA------------------------------ATCAAAAA-TTCTATTTCA--ATCCTCTTTAGATGAACAACTACTGGT-GTCCCACACGTTTGAT---CACTGAGGAGGTTGASizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGATTGACTTCTGGACGGCCAACAAG-ATGATCGACATCGATGGCCAGGASizeHit CountTotal NormTotal
No Reads
droBia1
TAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------AATAGCTGATTGACTTCTGGACGCCCAACAAG-CTGATCGACATCGATGGCCAGGASizeHit CountTotal NormTotal
No Reads
droTak1
AATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACCA--AT---ATATA-TT----ATCT--------ATTAGCTTATTGACTTCTGGACGCCCAACAAG-CTGATCGACATCGATGGCCAGGASizeHit CountTotal NormTotal
No Reads
droEug1
TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT--------TCTAGCTTATTGACTTCTGGACGGCCAACAAG-ATGATCGACATCGATGGTCAGGASizeHit CountTotal NormTotal
No Reads
dm3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGATTGACTTCTGGTCGCCCAACAAG-CTCATCGACATCGATGGCCAGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................GACTTCTGGTCGCCCAACAA.........................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CTTCTGGTCGCCCAACAAG-CT.....................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................CGACATCGATGGCCAGGA1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GACTTCTGGTCGCCCAACAAG-CT.....................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CAGCTGATTGACTTCTGGTCG.................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000
.................................................................................................................................................................................................................................TGACTTCTGGTCGCCCAACAAG-CT.....................2412.0020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................ATCGACATCGATGGCCAGGA2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGACTTCTGGTCGCCCAACAAG-CTC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CGCCCAACAAG-CTCATCGA...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AG-CTCATCGACATCGATGGC.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TGATTGACTTCTGGTCGCCCA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CTTCTGGTCGCCCAACAAG-CTC....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................GATTGACTTCTGGTCGCCCAACAA.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CCCAACAAG-CTCATCGACATC...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................ATCGACATCGATGGCCAGG.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................TGATTGACTTCTGGTCGCCCAACA..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GACTTCTGGTCGCCCAACA..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AGCTGATTGACTTCTGGTCGC................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GATTGACTTCTGGTCGCCCAACA..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGACTTCTGGTCGCCCAACAAG-C......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGACTTCTGGTCGCCCAACAA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CAAG-CTCATCGACATCGATGGCCAGGA2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GATTGACTTCTGGTCGCC...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CTGGTCGCCCAACAAG-CTCAT..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTGACTTCTGGTCGCCCAACAAG-.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTGACTTCTGGTCGCCCAACAA.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TT----TTCT--------CCAAGATGAACAATTACTGGT-GCCCAACGCGTCTGAT---CACCGAGGAGGTGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................CGTCTGAT---CACCGAA........15190.05100000000100000000
droSec2
ATTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAT-TT----TTCT--------CCAAGATGAACAATTACTGGT-GTCCAACGCGTCTGAT---CACCGAGGAGGTGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTT--GC---ATGTTGTT----ATCT--------ACCAGCTGGTTGATTTCTGGACGCCCAACAAG-CTCATCGACATCGATGGCCAGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................GATTTCTGGACGCCCAACAAG-CT.....................2314.00402100010000
............................................................................................................................................................................................................................CTGGTTGATTTCTGGACGCC...............................2013.00320100000000
.................................................................................................................................................................................................................................TGATTTCTGGACGCCCAACAAG-CT.....................2412.00202000000000
.............................................................................................................................................................................................................................................................CGACATCGATGGCCAGGA1812.00202000000000
.....................................................................................................................................................................................................................................TTCTGGACGCCCAACAAG-CT.....................2012.00200000020000
..................................................................................................................................................................................................................................GATTTCTGGACGCCCAACAAG-CTC....................2412.00201100000000
..................................................................................................................................................................................................................................................ACAAG-CTCATCGACATCGAT........2011.00101000000000
...............................................................................................................................................................................................................................GTTGATTTCTGGACGCCCAACAAG-CTC....................2711.00110000000000
...........................................................................................................................................................................................................................................................ATCGACATCGATGGCCAGG.1911.00100000010000
...........................................................................................................................................................................................................................................................ATCGACATCGATGGCCAGGA2011.00100000010000
....................................................................................................................................................................................................................................TTTCTGGACGCCCAACAAG-C......................2011.00100100000000
......................................................................................................................................................................................................................................TCTGGACGCCCAACAAG-CTCATC.................2311.00101000000000
.......................................................................................................................................................................................................................................CTGGACGCCCAACAAG-CTCATC.................2211.00101000000000
..........................................................................................................................................................................................................................................................CATCGACATCGATGGCCAG..1911.00101000000000
.............................................................................................................................................................................................................CT--------ACCAGCTGGTTGATTTCTGGAC..................................2411.00110000000000
...............................................................................................................................................................................................................................................CCAACAAG-CTCATCGACATC...........2011.00100100000000
...................................................................................................................................................................................................................................ATTTCTGGACGCCCAACAAG-CTCATCGA...............2811.00110000000000
.........................................................................................................................................................................................................................................GGACGCCCAACAAG-CTCATC.................2011.00100100000000
......................................................................................................................................................................................................................................TCTGGACGCCCAACAAG-CTCAT..................2211.00110000000000
................................................................................................................................................................................................................................................CAACAAG-CTCATCGACATCGAT........2211.00101000000000
.................................................................................................................................................................................................................................TGATTTCTGGACGCCCAACAAG-CTCATC.................2811.00101000000000
.................................................................................................................................................................................................................................................AACAAG-CTCATCGACATCGAT........2111.00100000010000
...............................................................................................................................................................................................................................................CCAACAAG-CTCATCGACATCG..........2111.00100000010000
............................................................................................................................................................................................................................................CGCCCAACAAG-CTCATCGACATC...........2311.00101000000000
...............................................................................................................................................................................................................................GTTGATTTCTGGACGCCCAACAAG-CT.....................2611.00101000000000
............................................................................................................................................................................................................................................CGCCCAACAAG-CTCATCGACATCGAC........2611.00100100000000
....................................................................................................................................................................................................................................TTTCTGGACGCCCAACAAG-CTC....................2211.00101000000000
........................................................................................................................................................................................................................................................CTCATCGACATCGATGGCCAGG.2211.00100000010000
................................................................................................................................................................................................................................................CAACAAG-CTCATCGACATCGATGGC.....2511.00101000000000
............................................................................................................................................................................................................................................CGCCCAACAAG-CTCATCGA...............1911.00101000000000
..................................................................................................................................................................................................................................GATTTCTGGACGCCCAACAAG-CTCAT..................2611.00101000000000
................................................................................................................................................................................................................................................CAACAAG-CTCATCGACATCG..........2011.00100000010000
......................................................................................................................................................................................................................................TCTGGACGCCCAACAAG-CTC....................2011.00110000000000
.....................................................................................................................................................................................................................................TTCTGGACGCCCAACAAG-CTCATC.................2411.00110000000000
droEre2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTGATTGACTTCTGGACGCCCAACAAG-CTCATCGACATCGATGGCCAGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................CGACATCGATGGCCAGGA1818.0081101140
..................................................................................................................................................................................................................................GACTTCTGGACGCCCAACAAG-CT.....................2316.0063000210
..............................................................................................................................................................................................................................GATTGACTTCTGGACGCC...............................1815.0050002030
................................................................................................................................................................................................................................................CAACAAG-CTCATCGACATCGAT........2214.0042000110
............................................................................................................................................................................................................................CTGATTGACTTCTGGACGCC...............................2014.0040201010
.................................................................................................................................................................................................................................................AACAAG-CTCATCGACATCGAT........2114.0040000400
...........................................................................................................................................................................................................................................................ATCGACATCGATGGCCAGGA2014.0040000400
...........................................................................................................................................................................................................................................................ATCGACATCGATGGCCAGG.1913.0030010110
...............................................................................................................................................................................................................................................CCAACAAG-CTCATCGACATC...........2012.0020200000
...............................................................................................................................................................................................................................ATTGACTTCTGGACGCCCAACAAG-CT.....................2612.0020100100
.............................................................................................................................................................................................................................................GCCCAACAAG-CTCATCGACAT............2112.0021000100
.........................................................................................................................................................................................................................................GGACGCCCAACAAG-CTCATC.................2012.0021100000
.....................................................................................................................................................................................................................................TTCTGGACGCCCAACAAG-CTCATC.................2412.0020000020
....................................................................................................................................................................................................................................CTTCTGGACGCCCAACAAG-CT.....................2112.0020000110
.................................................................................................................................................................................................................................TGACTTCTGGACGCCCAACAAG-CT.....................2411.0011000000
.......................................................................................................................................................................................................................................CTGGACGCCCAACAAG-CTCATCGACAT............2711.0010000100
..................................................................................................................................................................................................................................GACTTCTGGACGCCCAACAAG-C......................2211.0011000000
.............................................................................................................................................................................................................................................GCCCAACAAG-CTCATCGACATCGAT........2511.0011000000
...............................................................................................................................................................................................................................ATTGACTTCTGGACGCCCA.............................1911.0010001000
.....................................................................................................................................................................................................................................TTCTGGACGCCCAACAAG-CT.....................2011.0010001000
..............................................................................................................................................................................................................................GATTGACTTCTGGACGCCC..............................1911.0010100000
............................................................................................................................................................................................................................................CGCCCAACAAG-CTCATCGAC..............2011.0010100000
.................................................................................................................................................................................................................................................AACAAG-CTCATCGACATCGATGG......2311.0010000010
......................................................................................................................................................................................................................................TCTGGACGCCCAACAAG-CTC....................2011.0010100000
................................................................................................................................................................................................................................................CAACAAG-CTCATCGACATC...........1911.0010000010
...............................................................................................................................................................................................................................................CCAACAAG-CTCATCGACATCGATGGC.....2611.0010100000
.................................................................................................................................................................................................................................TGACTTCTGGACGCCCAACAAG-CTC....................2511.0010100000
...................................................................................................................................................................................................................................ACTTCTGGACGCCCAACAAG-CTCATCGA...............2811.0010000100
..........................................................................................................................................................................................................................................GACGCCCAACAAG-CTCATC.................1911.0010100000
....................................................................................................................................................................................................................................CTTCTGGACGCCCAACAAG-CTCATC.................2511.0011000000
.............................................................................................................................................................................................................................................GCCCAACAAG-CTCATCGAC..............1911.0011000000
.................................................................................................................................................................................................................................TGACTTCTGGACGCCCAACAA.........................2111.0011000000
...............................................................................................................................................................................................................................ATTGACTTCTGGACGCCCAACAAG-CTC....................2711.0010100000
................................................................................................................................................................................................................................................CAACAAG-CTCATCGACATCGA.........2111.0010000010
.........................................................................................................................................................................................................................................GGACGCCCAACAAG-CTCAT..................1911.0011000000
..........................................................................................................................................................................................................................................GACGCCCAACAAG-CTCAT..................1811.0011000000
...................................................................................................................................................................................................................................................CAAG-CTCATCGACATCGATGGC.....2211.0010001000
...............................................................................................................................................................................................................................ATTGACTTCTGGACGCCCAACA..........................2211.0010000010

Generated: 05/19/2015 at 05:00 PM