ID:

dvi_11574

 Coordinate:

scaffold_12963:12990389-12990451 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.6

Flybase annnotation

exon [dvir_GLEANR_2046:1]; CDS [Dvir\GJ17453-cds]; exon [dvir_GLEANR_2046:2]; CDS [Dvir\GJ17453-cds]; intron [Dvir\GJ17453-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. dvi_22833  scaffold_12875:1968348-1968374 +
  2. scaffold_12875:5452949-5452975 +
  3. dvi_11574  scaffold_12963:12990422-12990448 +
  4. scaffold_12963:13397547-13397573 +
  5. scaffold_12970:10497776-10497802 -
  6. scaffold_13047:10114448-10114474 -
  7. scaffold_13049:13955113-13955139 -
star
  1. scaffold_12726:1899454-1899472 +
  2. scaffold_12855:6896609-6896627 +
  3. scaffold_12875:1066383-1066401 +
  4. scaffold_12928:4230262-4230280 +
  5. scaffold_12928:5353695-5353713 +
  6. scaffold_12963:6941848-6941866 +
  7. scaffold_12963:7707353-7707371 +
  8. scaffold_12963:10853290-10853308 +
  9. scaffold_12963:15717237-15717255 +
  10. scaffold_12963:16338349-16338367 +
  11. scaffold_12963:18589377-18589395 +
  12. scaffold_12970:4319271-4319289 +
  13. scaffold_12970:6442077-6442095 +
  14. scaffold_13042:2785475-2785493 +
  15. scaffold_13049:1089709-1089727 +
  16. scaffold_13049:4274948-4274966 +
  17. scaffold_13049:6527714-6527732 +
  18. scaffold_13049:8797121-8797139 +
  19. scaffold_13049:21207781-21207799 +
  20. scaffold_13246:1789540-1789558 +
  21. scaffold_12726:1158590-1158608 +
  22. scaffold_12822:1597530-1597548 +
  23. scaffold_12823:1910691-1910709 +
  24. scaffold_12855:7978344-7978362 +
  25. scaffold_12855:8907008-8907026 +
  26. scaffold_12875:4360839-4360857 +
  27. scaffold_12875:6425253-6425271 +
  28. scaffold_12875:7244356-7244374 +
  29. scaffold_12875:20133660-20133678 +
  30. scaffold_12928:1165845-1165863 +
  31. scaffold_12932:1634844-1634862 +
  32. scaffold_12963:1882338-1882356 +
  33. scaffold_12963:8860500-8860518 +
  34. scaffold_12963:15191131-15191149 +
  35. scaffold_12970:1502783-1502801 +
  36. scaffold_12970:7966556-7966574 +
  37. scaffold_13049:9936485-9936503 +
  38. scaffold_13049:18919533-18919551 +
  39. scaffold_13049:21126465-21126483 +
  40. scaffold_13049:22226011-22226029 +
  41. scaffold_10324:132670-132688 +
  42. scaffold_12723:3112860-3112878 +
  43. scaffold_12855:7728854-7728872 +
  44. scaffold_12855:7900559-7900577 +
  45. scaffold_12875:1452217-1452235 +
  46. scaffold_12875:1885094-1885112 +
  47. scaffold_12875:20113155-20113173 +
  48. scaffold_12928:1067834-1067852 +
  49. scaffold_12928:1645062-1645080 +
  50. scaffold_12928:5262595-5262613 +
  51. scaffold_12932:1904907-1904925 +
  52. scaffold_12963:651252-651270 +
  53. scaffold_12970:8837503-8837521 +
  54. scaffold_13047:9607688-9607706 +
  55. scaffold_13049:7541805-7541823 +
  56. scaffold_13049:17613836-17613854 +
  57. scaffold_13049:17887496-17887514 +
  58. scaffold_13049:23105030-23105048 +
  59. scaffold_13324:2690636-2690654 +
  60. scaffold_13324:2690660-2690678 +
  61. scaffold_10324:162136-162154 +
  62. scaffold_12726:468933-468951 +
  63. scaffold_12726:1899475-1899493 +
  64. scaffold_12855:7977956-7977974 +
  65. scaffold_12875:4529194-4529212 +
  66. scaffold_12928:2497856-2497874 +
  67. scaffold_12928:3996023-3996041 +
  68. scaffold_12963:15785027-15785045 +
  69. scaffold_12970:1522650-1522668 +
  70. scaffold_12970:2771364-2771382 +
  71. scaffold_12970:6991434-6991452 +
  72. scaffold_13042:1703476-1703494 +
  73. scaffold_13047:6482012-6482030 +
  74. scaffold_13047:18540447-18540465 +
  75. scaffold_13047:18784942-18784960 +
  76. scaffold_13049:2638179-2638197 +
  77. scaffold_13049:12173129-12173147 +
  78. scaffold_13049:19943129-19943147 +
  79. scaffold_13049:23090481-23090499 +
  80. scaffold_13246:1973851-1973869 +
  81. scaffold_10324:629318-629336 +
  82. scaffold_12723:2667752-2667770 +
  83. scaffold_12822:2881563-2881581 +
  84. scaffold_12855:1627090-1627108 +
  85. scaffold_12875:4705753-4705771 +
  86. scaffold_12875:5440102-5440120 +
  87. scaffold_12875:6381305-6381323 +
  88. scaffold_12875:19604587-19604605 +
  89. dvi_8306  scaffold_12928:578434-578452 +
  90. scaffold_12928:1183662-1183680 +
  91. scaffold_12928:2487227-2487245 +
  92. scaffold_12963:648459-648477 +
  93. scaffold_12963:10695858-10695876 +
  94. scaffold_12970:8452283-8452301 +
  95. scaffold_13042:4330135-4330153 +
  96. scaffold_13047:6310521-6310539 +
  97. scaffold_13047:9607607-9607625 +
  98. scaffold_13049:1280443-1280461 +
  99. scaffold_13049:1865641-1865659 +
  100. scaffold_13049:17613875-17613893 +
  101. scaffold_12726:315375-315393 +
  102. scaffold_12855:2013164-2013182 +
  103. scaffold_12855:3281282-3281300 +
  104. scaffold_12855:7290592-7290610 +
  105. scaffold_12855:7944500-7944518 +
  106. scaffold_12875:10920379-10920397 +
  107. scaffold_12875:13586633-13586651 +
  108. scaffold_12928:246723-246741 +
  109. scaffold_12928:2185982-2186000 +
  110. scaffold_12928:2831032-2831050 +
  111. scaffold_12932:1672528-1672546 +
  112. scaffold_12963:15534456-15534474 +
  113. scaffold_12970:7508531-7508549 +
  114. scaffold_13042:1761590-1761608 +
  115. scaffold_13047:8827278-8827296 +
  116. scaffold_13047:17316191-17316209 +
  117. scaffold_13049:7541739-7541757 +
  118. scaffold_13049:10049453-10049471 +
  119. scaffold_13049:18760809-18760827 +
  120. scaffold_13049:23087911-23087929 +
  121. scaffold_10324:940776-940794 +
  122. scaffold_12472:473344-473362 +
  123. scaffold_12723:787482-787500 +
  124. scaffold_12723:858893-858911 +
  125. scaffold_12726:483900-483918 +
  126. scaffold_12875:1116075-1116093 +
  127. scaffold_12875:7102883-7102901 +
  128. scaffold_12875:9893310-9893328 +
  129. scaffold_12875:16968898-16968916 +
  130. scaffold_12928:2593534-2593552 +
  131. scaffold_12928:5725681-5725699 +
  132. scaffold_12963:12024058-12024076 +
  133. scaffold_13042:2985062-2985080 +
  134. scaffold_13042:3353102-3353120 +
  135. scaffold_13047:4859025-4859043 +
  136. scaffold_13049:2142857-2142875 +
  137. scaffold_13049:5502360-5502378 +
  138. scaffold_13049:6093587-6093605 +
  139. scaffold_13049:14246245-14246263 +
  140. scaffold_13049:20219506-20219524 +
  141. scaffold_12726:468912-468930 +
  142. scaffold_12928:5218366-5218384 +
  143. scaffold_12928:6948917-6948935 +
  144. scaffold_12963:17923897-17923915 +
  145. scaffold_13042:1975724-1975742 +
  146. scaffold_13049:15440689-15440707 +
  147. scaffold_12855:7895683-7895701 +
  148. scaffold_12875:10921105-10921123 +
  149. scaffold_12875:14458733-14458751 +
  150. scaffold_12875:19424133-19424151 +
  151. scaffold_12875:19860237-19860255 +
  152. scaffold_12875:20045831-20045849 +
  153. scaffold_12875:20111642-20111660 +
  154. scaffold_12928:1077641-1077659 +
  155. scaffold_12928:5363596-5363614 +
  156. scaffold_12963:2626330-2626348 +
  157. dvi_11574  scaffold_12963:12990396-12990414 +
  158. scaffold_12963:16356413-16356431 +
  159. scaffold_12970:7045416-7045434 +
  160. scaffold_12970:11245498-11245516 +
  161. scaffold_13047:11667844-11667862 +
  162. scaffold_13047:13928186-13928204 +
  163. scaffold_13049:10886691-10886709 +
  164. scaffold_13049:23088700-23088718 +
  165. scaffold_13246:2457859-2457877 +
  166. scaffold_10324:1150717-1150735 +
  167. scaffold_12855:2541898-2541916 +
  168. scaffold_12875:14302100-14302118 +
  169. scaffold_12932:1626754-1626772 +
  170. scaffold_12932:1962909-1962927 +
  171. scaffold_12963:1504419-1504437 +
  172. scaffold_12970:2479156-2479174 +
  173. scaffold_12970:2622578-2622596 +
  174. scaffold_12970:4723066-4723084 +
  175. scaffold_12970:7964006-7964024 +
  176. scaffold_13047:3417798-3417816 +
  177. scaffold_13047:3958294-3958312 +
  178. scaffold_13047:6370160-6370178 +
  179. scaffold_13047:13452434-13452452 +
  180. scaffold_13047:13760806-13760824 +
  181. scaffold_13047:18431780-18431798 +
  182. scaffold_13049:12319792-12319810 +
  183. scaffold_13049:14680318-14680336 +
  184. scaffold_13049:15638990-15639008 +
  185. scaffold_13049:20472655-20472673 +

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
ATCACCAGCAGCAGCAGCAGGCGGCAGCAGCGGCCGCTGCCGCAGCAGCAGCAGCCCAACAACAACAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAACATCAGCAACAGCAACAGCAACAGAATGGCTGCCGCGACGGCAGCAACAGCTCGCG
*********************************************************..........((.((.((....((....))....)).)).))...........***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060679
140x9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 V047
embryo
 SRR060687
9_0-2h_embryos_total
 M061
embryo
 SRR060674
9x140_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V053
head
.............GCAGCAGGCAGCAGCAGCGCCC................................................................................................................................ 22 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAGCAACAGCAGCAGCAGCAGCAACAT..................................................... 27 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGCAACAGCAGCAGCAGCAG........................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCAACAGCAGCAGCAGCAGCA......................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AACAACAACAGCAGCAGCA....................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AACAGCAACAGCAGCAGCAGC............................................................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GCAGCAACATCAGCAACAGCA.......................................... 21 0 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......AGCAGCAACAGCAGGCGGCCGCA...................................................................................................................................... 23 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GCAGCAGCAACATCAGCAAC.............................................. 20 0 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................CAGCAGAAACATCAGCAACAGC........................................... 22 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AACAGCAGCAGCAACAGCAACAGCAAC......................................................................... 27 0 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................AACAACAGCAGCAGCAACAGCAACAG............................................................................. 26 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CAGCAACAGCAACAGCAACA........................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................CAGCAACAGCAGCAGCAGC............................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................ACAGCAGCAGCAACAGCAACAGCAACA........................................................................ 27 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TCAGCAACAGCAACAGCAACA................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGGCGGCCGCGACGGCAGCG.......... 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AGCAACAGCAACAGCAGCAGCA............................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AACAGCAACAGCAGCAGCAGCA............................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CCAACAACAACAGCAGCAGC........................................................................................ 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAACAGCAACAGCAGCAGCAGC............................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAGCAGCAACAGCAACAGCAACAGC...................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................AGCAACAGCAACAGCAGCAGC................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AGCAGCAGCAGCAACATCA................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAACAGCAACAGCAGCAGC................................................................ 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CAACAACAACAGCAGCAGCAACAGC.................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................CAGCAACAGCAACAGCAACAGCA..................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
ATCACCAGCACCAGCAGCA................................................................................................................................................ 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................GCAACAGCAACAGCAGCAGCAGCAGCA......................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAGCAACAGCAGCAGCAGCAGCAAC....................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................ACAACAGCAGCAGCAACAGCAACA.............................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................GCAGCAACAGCAACAGCAACAGC...................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CAACAGCAACAGCAACAGA............................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ACAACAACAGCAGCAGCAA...................................................................................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AGCAACAGCAACAGCAACA................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................AGCAGCAGCAACAGCAACA.............................................................................. 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGTGGTCGTCGTCGTCGTCCGCCGTCGTCGCCGGCGACGGCGTCGTCGTCGTCGGGTTGTTGTTGTCGTCGTCGTTGTCGTTGTCGTTGTCGTCGTCGTCGTCGTTGTAGTCGTTGTCGTTGTCGTTGTCTTACCGACGGCGCTGCCGTCGTTGTCGAGCGC
*****************************************************..........((.((.((....((....))....)).)).))...........********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M028
head
 V053
head
 M027
male body
.....................................................CGGGTTGTTGTTGTCGTCGTC......................................................................................... 21 0 4 0.50 2 2 0 0
....................................................................................................................GTCGTTGTCGTTGTCTTA............................. 18 0 9 0.22 2 2 0 0
............................................................................................................................CGTTGTAGTACCGACAGCGC................... 20 3 10 0.10 1 0 1 0
...........................................................................................................................................GGCGCTGCCGTCATCTTC...... 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:12990339-12990501 + dvi_11574 ATCACCAGCAGCAGCAGCAG--GCGGCAGCAGCGGCCGCTGCCGCAGCAGCAGCAGCCCAACA---ACAACAGCAGCA------------------GCAACAGCAACAGCAACAGCAGCAGCAGCAGCAACA---------TC------AGCAACAGCAACAGCA-A------CAG-AAT---------GGCTGCC-------------GCGACGGCAGCAAC------AGCTCGCG
droMoj3 scaffold_6500:7087638-7087806 - ATCATCAGCAGCAACAGCAA--GCGGCAGCTGCTGCCGCCGCCGCCGCTGCAGCGGCCCAGCA---GCAACAACAGCA---------GCAG---CAGCAGCAGCAACAGCAGCAGCAACAGC------AACAG---CAGCAAC------ATCAACAGCAACAGCA-A------CAG-AAT---------GGCTGCC-------------GAGACGGCAGCAAC------AGTTCACG
droGri2 scaffold_15081:2362044-2362202 - AGCAGCAGCAGCAGCAGCAG---GCGCAGCAGCAGCAGCAGGCGCAGCAGCAGCAAC--AGCA---ACAACATCAGCA------------A---CAGCAACAGCAGCAGCAGCAGCAGCAGCAGGCGCAGCAG---CAGCAAC------AGCAGCA------GCA-A------CAGCAAC---------AGCAGCA-------------GCAGCAGCAACAAC------AGC-----
droWil2 scf2_1100000004585:4709880-4710054 - ATCATCAGCAACAACAACAG--CAAGCGGCAGCTGCTGCAGCAGCCGCAGCAGCAGC--A-------CAACAGCAGCAACAACAGCAGCAG---CAACAACAACAACAGCAGCAGCAACAGC------AACAA---CAGCAGC------AACAGCA----------------GCAACAAC---------ATCAGCAACAAAATGGTC--GCGACGGCAGCAAC------AGTTCACG
dp5 XR_group6:2766917-2767086 + AGCAACAGCAACAGCAGCAG---CAACAGCAGCAGCAGCAGCAGCAACAGAAGCAGC--AGCA---GCAACTGCAGCA------------A---CAGCAGCAGCAACAGCAACAGCAGCAGCAGC---AACAGCAGCAACAGC------AGCAGCA------GCA-ACAGCAGCAGCAAC---------TGC---A-------------GCAACAGCAACAACAGCTACAGC---CG
droPer2 scaffold_1:9655841-9655982 - ACCATCAACAGCAGCAGCAG--GCCGCCGCCGCGGCAGCAGCAGCAGCAGCCGCCGCC---------------------------------------CAACAGCAGCAGCAACAACAGCAACAGCAG---------CAACAAC------AGCAGCAGCAACAGCA-A------CAG-AAC---------GGC---C-------------GCGACGGCAGCAAC------AGCTCTCG
droAna3 scaffold_13248:2270651-2270801 - dan_4064 -----CGGCAGCAGCAGCAGCCACAGCAGCAACAGCAGCAGCAGCAACAGCAACAGC--A------ACAGCAACAGCA------------G---CAGCAACAGCAGCAGCAACAGCAGCAGCAGCCACAGCAG---CAGCAAC------AGCAGCA------ACG-A------CAGCAGC---------AGC---A-------------GCAACGTCAGCAGC------AGC-----
droBip1 scf7180000396360:488669-488824 - AGCAGCAGCAGCAACAGCAG---TATCAGCAGCTGCAGCAGCATCAACAACTGCAGC--AGCA---TCAACAACAGCA------------A---CAGCATCAACAACAGCAGCAGCATCAAC------AACAG---CAGCATC------AACAACA------GCA-ACAGCATCAGCAAC---------TGC---A-------------GCAGCATCAGCAAC------AGC-----
droKik1 scf7180000302809:429-585 + ACCAGCAGCAGCAGCACCAG---CAGCAGCAGCTCCAGCAGCAGCAGCACCAGCAGC--AGCA---CCACCAGCAGCA------------------GCAGCACCAGCAGCAGCAGCACCAGCAGCAGCAGCAC------CAGC------AGCAGCA------GCACACAGCAGCAGCAGC---------AAC---A-------------GCAGCAGCACCAAC------AGC-----
droFic1 scf7180000451789:487876-488028 - AGCAGCAACATCAGCAGCAG---CAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGC--AGCA---ACAACAGCAGCA------------------ACAACAGCAGCAACAACAGCAGCAGCAGCAGCAACAG---CAGCAAC------AACAGCA------ACA-T------CAGAAAG---------AGC---A-------------GCAACATCAGCGGC------GGC-----
droEle1 scf7180000491044:890413-890567 + AGCAGCAACAGCAGCAGCAG---CACCAGCAACATCATCAGCAACAGCAGCAGCAGC--AACA---TCACCAGCAGCA------------------GCAACAGCAACATCAGCAGCAGCAAC------AACAG---CAACAAC------AGCAACTGCAACAGCA-A------CAGCAAA---------TG------------GCGCCCGAA-------AAAC------CGCTCGAG
droRho1 scf7180000760202:71867-72028 + AACAGCAGCAGCAACAACAG---CAGCAGCAACAACAACAGCAGCAGCAACAACAGC--AGCA---GCAACAACAACA------------GCAGCAGCAACAACAACAGCAGCAGCAACAAC------AGCAG---CAGCAAC------AACAGCA------GCA-ACAGCAACAACAAC------AACAGC---A-------------GCAACAGCAACAAC------AAC-----
droBia1 scf7180000302402:3169054-3169214 - AGCAGCAACAGCAGCAGCAG---CAACACTAGCAGCAGCAACAGCAGCAGCAGCAAC--AACA---CCAGCAACA---------------------GCGACAGCAACAGCGACAGCAACAGCAGCTACGCCAG---CAGCAAC------AGCAGCA------GCA-ACAGCAGCAGCAGC---------GCC---A-------------GCAGCAGCAGCAACACT---CGC---AG
droTak1 scf7180000415157:436420-436581 - ACCACAAGCAGGACAAGCAG---CAACAGCAGCAGCGACAGCAGCAGCGACAGCAGC--AACA---TCAACAGCAACA------------T---CAACAACATCAGCAACAACAGCAGCAGCGGCAGCAACA---------CC------GGCAACA------GCA-ACAGCAATACTAGC---------GACAGCA-------------GCAACACCAGCACC------ACC--ACG
droEug1 scf7180000409474:908175-908337 + ACCAGCAGCATCAGCAGCAC---CAGCAGCACCAACAGCATCAGCAGCACCAGCAAC--AGCA---GCATCAGCAGCA------------------TCAACAGCATCAGCAACATCAGCAACATCAGCAGCAT---CAGCAAC------ACCAGCA------GCA-T------CAGCAACATCAGCAGCACC---A-------------GCAGCATCAGCAGC------AGG----G
dm3 chrX:9649010-9649157 + ACCAGCAGCAGCAGCAGCAG---CAACATCAGCAGCAACAGCAGCAACAGCAGCAGC--AGCA---GCATCAACAGCA------------------GCAACAGCAGCAACATCAACAGCAGCAGCAGCAACAT---------CAGCAGCAGCAGCA------GCA-A------CACC------------ACC---A-------------GCAACAGCAGCAGC------A-------
droSim2 3l:9459966-9460126 + ATCACCACCAACAGCAGCAG---CAGCAGCATCAACAGCAACAGCAGCAGCAACAGC--ATCAGCAGCAGCAGCAGCA------------------GCAACATCAACAGCAGCAACATCAACAGCAG---------CAACACC------AACAGCAGCAACAGCA-A------CAGAAGC------AGCTCC---A-------------GCAGCAGCAGCAGC------ATC---AA
droSec2 scaffold_4:2908094-2908250 + ATCAGCAGCAGCAGCTGCAG---CATCAGCAGCAGCAGCAGCTGCAGCATCAGCAGC--AGCA---GCAACATCAGCA------------G---CAACAAAATCAGCAGCAGCAGCAGCTACAACAG---------CAACATC------AGCAGCA------GCA-ACAGCTGCAGCATC---------AGCAGCA-------------GCATCAGCAGCAAC------A-------
droYak3 X:19447741-19447898 - AGCAACAGCAACAGCAGCAG---CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGC--AACA---ACAGCAGCAGCA------------------GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG---------CAGCAGCAGCAGCA------GCA-A------CAGCAGC---------AGCAGCA----------GCAGCAGCAGCAACAAC------A------G
droEre2 scaffold_4784:3586568-3586721 + AGCATCAGCAGCAGCAGCAG---CAGCATCAACAGCAGCAGCAGCAGCAACAGCAGC--AACA---GCAGCAACAGCA------------------GCAGCAGCAACAACAGCAACAGCAGCAGCAGCAACA---------GCAGCAGCATCAACA------GCA-A------CAGCAGC---------AAC---A-------------GCAACAGCAGCAGC------AGTT----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCACCAGCAGCAGCAGCAG--GCGGCAGCAGCGGCCGCTGCCGCAGCAGCAGCAGCCCAACA---ACAACAGCAGCA------------------GCAACAGCAACAGCAACAGCAGCAGCAGCAGCAACA---------TC------AGCAACAGCAACAGCA-A------CAG-AAT---------GGCTGCC-------------GCGACGGCAGCAAC------AGCTCGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................CAGCAACAGCAGCAGCAGCAGCAACA---------T...............................................................................................2770.141001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGCAACAGCAGCAGCAGCAG..............................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
............................................................................................................GCAACAGCAGCAGCAGCAGCA............................................................................................................21200.102000000000000000000000000002000000000000000000000000000000000000
...........................................................AACA---ACAACAGCAGCA------------------GCA..........................................................................................................................................19200.102000000000000000000000000000000000000000000000000000000000002000
........................................................................................................AACAGCAACAGCAGCAGCAGC................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GCAGCAACA---------TC------AGCAACAGCA..............................................................................21120.081000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................GCAGCAGCAACA---------TC------AGCAAC..................................................................................20160.061000100000000000000000000000000000000000000000000000000000000000
....................................................................AACAGCAGCA------------------GCAACAGCAACAGCAAC............................................................................................................................27190.051000000000000000000000000100000000000000000000000000000000000000
..............................................................A---ACAACAGCAGCA------------------GCAACAGCAACAG................................................................................................................................26190.051000000000000000000000000000000000010000000000000000000000000000
............................................................................CA------------------GCAACAGCAACAGCAACA...........................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................CAGCAACAGCAGCAGCAGC................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
.....................................................................ACAGCAGCA------------------GCAACAGCAACAGCAACA...........................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................TC------AGCAACAGCAACAGCA-A------CA..............................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AGCAACAGCAACAGCAGCAGCA..................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................AACAGCAACAGCAGCAGCAGCA...............................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................CCAACA---ACAACAGCAGCA------------------GC...........................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................CAACAGCAACAGCAGCAGCAGC................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................CAGCA------------------GCAACAGCAACAGCAACAGC.........................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................AGCAACAGCAACAGCAGCAGC...................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGCAGCAGCAGCAACA---------TC------A.......................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................CAACAGCAACAGCAGCAGC...................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................CAACA---ACAACAGCAGCA------------------GCAACAGC.....................................................................................................................................25200.051000000000000000000000000000000000000001000000000000000000000000
............................................................................CA------------------GCAACAGCAACAGCAACAGCA........................................................................................................................23200.051000010000000000000000000000000000000000000000000000000000000000
......................................................................................................GCAACAGCAACAGCAGCAGCAGCAGCA............................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................CAGCAACAGCAGCAGCAGCAGCAAC..........................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
..................................................................ACAACAGCAGCA------------------GCAACAGCAACA.................................................................................................................................24200.051000000000000000000100000000000000000000000000000000000000000000
...........................................................................GCA------------------GCAACAGCAACAGCAACAGC.........................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CAACAGCAACAGCA-A------CAG-A...........................................................19200.051001000000000000000000000000000000000000000000000000000000000000
............................................................ACA---ACAACAGCAGCA------------------GCAA.........................................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................AGCAACAGCAACAGCA-A------CA..............................................................19200.051000000000000000001000000000000000000000000000000000000000000000
.......................................................................AGCAGCA------------------GCAACAGCAACA.................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
ATCATCAGCAGCAACAGCAA--GCGGCAGCTGCTGCCGCCGCCGCCGCTGCAGCGGCCCAGCA---GCAACAACAGCA---------GCAG---CAGCAGCAGCAACAGCAGCAGCAACAGC------AACAG---CAGCAAC------ATCAACAGCAACAGCA-A------CAG-AAT---------GGCTGCC-------------GAGACGGCAGCAAC------AGTTCACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............CAGCAA--GCGGCAGCTGCTGCCGCCGCCGC................................................................................................................................................................................................2911.001000010
.............................................................................................................CAGCAGCAACAGC------AACAG---CAGC.................................................................................................22200.204000040
...............................................................................................AGCAGCAGCAACAGCAGCAGC.........................................................................................................................21200.153300000
...........................................................................................................................................CAAC------ATCAACAGCAACAGCA-A------C...............................................................22200.051100000
........................................................................................................AACAGCAGCAGCAACAGC------A............................................................................................................19200.051010000
.....................................................................ACAACAGCA---------GCAG---CAGCAGCAGCAACA.................................................................................................................................27200.051000010
......................................................................................................GCAACAGCAGCAGCAACAGC------AACA.........................................................................................................24200.051100000
droGri2
AGCAGCAGCAGCAGCAGCAG---GCGCAGCAGCAGCAGCAGGCGCAGCAGCAGCAAC--AGCA---ACAACATCAGCA------------A---CAGCAACAGCAGCAGCAGCAGCAGCAGCAGGCGCAGCAG---CAGCAAC------AGCAGCA------GCA-A------CAGCAAC---------AGCAGCA-------------GCAGCAGCAACAAC------AGC-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................CAGCAGCAGCAGCAGGCGCAGCA.........................................................................................................2360.17110
.....CAGCAGCAGCAGCAG---GCGCAGCA..............................................................................................................................................................................................................2360.17110
..........................CAGCAGCAGCAGCAGGCGCAGCA............................................................................................................................................................................................2360.17110
............................GCAGCAGCAGCAGGCGCA...............................................................................................................................................................................................18200.05110
.................................................................................................CAACAGCAGCAGCAGCAGCAGCAGCA..................................................................................................................26200.05110
droWil2
ATCATCAGCAACAACAACAG--CAAGCGGCAGCTGCTGCAGCAGCCGCAGCAGCAGC--A-------CAACAGCAGCAACAACAGCAGCAG---CAACAACAACAACAGCAGCAGCAACAGC------AACAA---CAGCAGC------AACAGCA----------------GCAACAAC---------ATCAGCAACAAAATGGTC--GCGACGGCAGCAAC------AGTTCACGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................AAATGGTC--GCGACGGCAGC.................1911.00100001
.....................................................................................................AACAACAGCAGCAGCAACA.....................................................................................................................19200.20400040
......................................................................................................................................................ACAGCA----------------GCAACAAC---------ATCAGC..........................................2090.11100001
........................................................................................CAG---CAACAACAACAACAGCAGC............................................................................................................................22200.05100010
....................................................................................................................................A---CAGCAGC------AACAGCA----------------GCAAC............................................................20200.05100010
.....................................GCAGCAGCCGCAGCAGCAGC--A-------..........................................................................................................................................................................21200.05100010
......................................................................................AGCAG---CAACAACAACAACAGCAG.............................................................................................................................23200.05101000
.........................................................................................AG---CAACAACAACAACAGCAGCAGCAAC......................................................................................................................27200.05100010
.................................................................................................CAACAACAACAGCAGCAGCAA.......................................................................................................................21200.05101000
..................................................................................................AACAACAACAGCAGCAGCAA.......................................................................................................................20200.05100010
...........................................................A-------CAACAGCAGCAACAACAGCAGC....................................................................................................................................................23200.05100010
..........................................................................................G---CAACAACAACAACAGCAGCAGCA........................................................................................................................24200.05101000
......................................................................................AGCAG---CAACAACAACAAC..................................................................................................................................18200.05100010
..........................................................................................................CAGCAGCAGCAACAGC------AACAA---.....................................................................................................21200.05100010
.....................................................................................CAGCAG---CAACAACAACAACAG................................................................................................................................21200.05100001
dp5
AGCAACAGCAACAGCAGCAG---CAACAGCAGCAGCAGCAGCAGCAACAGAAGCAGC--AGCA---GCAACTGCAGCA------------A---CAGCAGCAGCAACAGCAACAGCAGCAGCAGC---AACAGCAGCAACAGC------AGCAGCA------GCA-ACAGCAGCAGCAAC---------TGC---A-------------GCAACAGCAACAACAGCTACAGC---CGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................A------------A---CAGCAGCAGCAACAGCA..............................................................................................................................19200.2550000500000
...........................................................................................................AGCAACAGCAGCAGCAGC---A............................................................................................................19200.1530300000000
........................................................................GCAGCA------------A---CAGCAGCAGCAAC..................................................................................................................................20200.1530030000000
........................................................................................................................................CAACAGC------AGCAGCA------GCA-ACA....................................................................20200.1020000200000
.........................ACAGCAGCAGCAGCAGCAGCA...............................................................................................................................................................................................21200.1020000020000
........................................................................GCAGCA------------A---CAGCAGCAGCAACAGCAAC............................................................................................................................26170.0610001000000
..........................................................................AGCA------------A---CAGCAGCAGCAACAGCAACAGC.........................................................................................................................27180.0610100000000
................GCAG---CAACAGCAGCAGCAGCAGCAGCAAC.............................................................................................................................................................................................29190.0510010000000
...................................................................................................GCAGCAACAGCAACAGCAGCAGCAGC---.............................................................................................................26200.0510100000000
..................................................................................................AGCAGCAACAGCAACAGCAGC......................................................................................................................21200.0510100000000
................................................................................................................CAGCAGCAGCAGC---AACAGC.......................................................................................................19200.0510000100000
......................................................................................................................CAGCAGC---AACAGCAGCAACAGC------A.......................................................................................23200.0510100000000
........................AACAGCAGCAGCAGCAGCA..................................................................................................................................................................................................19200.0510000100000
...................................................................................................GCAGCAACAGCAACAGCAGCAGC...................................................................................................................23200.0510100000000
...................................................................................................GCAGCAACAGCAACAGCA........................................................................................................................18200.0510100000000
............................................................................................................GCAACAGCAGCAGCAGC---AACAG........................................................................................................22200.0510100000000
............................................................................................................GCAACAGCAGCAGCAGC---AACAGCA......................................................................................................24200.0510100000000
......................................................................................................................CAGCAGC---AACAGCAGCAACA................................................................................................20200.0510000010000
...........................................................................................................................................CAGC------AGCAGCA------GCA-ACAGC..................................................................19200.0510000100000
......AGCAACAGCAGCAG---CAACAGCAGC............................................................................................................................................................................................................24200.0510000000001
.........................................................................CAGCA------------A---CAGCAGCAGCAACA.................................................................................................................................20200.0510100000000
..........ACAGCAGCAG---CAACAGCAGC............................................................................................................................................................................................................20200.0510100000000
............................................................................CA------------A---CAGCAGCAGCAACAGCAAC............................................................................................................................22200.0510100000000
.............................................................................................................CAACAGCAGCAGCAGC---AACAG........................................................................................................21200.0510100000000
......................................................................................................GCAACAGCAACAGCAGCAGCAGC---A............................................................................................................24200.0510100000000
.....................................................................................................................................CAGCAACAGC------AGCAGCA------GCA-AC.....................................................................22200.0510010000000
.........AACAGCAGCAG---CAACAGCAGCA...........................................................................................................................................................................................................22200.0510100000000
.............................................................................................................CAACAGCAGCAGCAGC---AACAGC.......................................................................................................22200.0510100000000
...............................................................................................................ACAGCAGCAGCAGC---AACAGCAGC....................................................................................................23200.0510100000000
.................................................................................................................AGCAGCAGCAGC---AACAGCAGC....................................................................................................21200.0510100000000
.....................................................................................................................GCAGCAGC---AACAGCAGCAAC.................................................................................................20200.0510100000000
..........................................................................................................................................ACAGC------AGCAGCA------GCA-ACAGCAGC...............................................................23200.0510100000000
.....................................................................................................................GCAGCAGC---AACAGCAGCAACAGC------........................................................................................23200.0510100000000
............................................................................CA------------A---CAGCAGCAGCAACAGC...............................................................................................................................19200.0510010000000
................GCAG---CAACAGCAGCAGCAGCA.....................................................................................................................................................................................................21200.0510000100000
.......GCAACAGCAGCAG---CAACAGCAGCAGC.........................................................................................................................................................................................................26200.0510000000001
....................................................................................................................AGCAGCAGC---AACAGCAGCAACAGC------AGCA....................................................................................28200.0510100000000
............................................................................................................................................AGC------AGCAGCA------GCA-ACAGCAGC...............................................................21200.0510100000000
.......................................................................................................CAACAGCAACAGCAGCAGCA..................................................................................................................20200.0510000100000
....................................................................................................................................GCAGCAACAGC------AGCAGCA------GCA-ACAGCA.................................................................27200.0510000000001
...AACAGCAACAGCAGCAG---CAACA.................................................................................................................................................................................................................22200.0510000100000
...AACAGCAACAGCAGCAG---C.....................................................................................................................................................................................................................18200.0510010000000
..CAACAGCAACAGCAGCAG---CAACA.................................................................................................................................................................................................................23200.0510001000000
...................................................................................................GCAGCAACAGCAACAGCAGCAGCAGC---A............................................................................................................27200.0510100000000
........................................................................................................................................CAACAGC------AGCAGCA------GCA-ACAGC..................................................................22200.0510100000000
..................................................................................................AGCAGCAACAGCAACAGCAGCAGCAGC---.............................................................................................................27200.0510010000000
......AGCAACAGCAGCAG---CAACAGCAGCAGC.........................................................................................................................................................................................................27200.0510000000001
..................AG---CAACAGCAGCAGCAGCAGCAGCA...............................................................................................................................................................................................25200.0510100000000
droPer2
ACCATCAACAGCAGCAGCAG--GCCGCCGCCGCGGCAGCAGCAGCAGCAGCCGCCGCC---------------------------------------CAACAGCAGCAGCAACAACAGCAACAGCAG---------CAACAAC------AGCAGCAGCAACAGCA-A------CAG-AAC---------GGC---C-------------GCGACGGCAGCAAC------AGCTCTCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
-----CGGCAGCAGCAGCAGCCACAGCAGCAACAGCAGCAGCAGCAACAGCAACAGC--A------ACAGCAACAGCA------------G---CAGCAACAGCAGCAGCAACAGCAGCAGCAGCCACAGCAG---CAGCAAC------AGCAGCA------ACG-A------CAGCAGC---------AGC---A-------------GCAACGTCAGCAGC------AGC-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................ACAGCAGCAGCAGCCACAGC..........................................................................................................2011.001010000
..........................................................................................................CAGCAACAGCAGCAGCAGCCAC.............................................................................................................2220.501010000
..........................................................................................G---CAGCAACAGCAGCAGCAACAGCAGCAGC...................................................................................................................2960.171010000
.....................................................................................................................GCAGCAGCCACAGCAG---CAGC.................................................................................................2070.141010000
.........................................................................................................GCAGCAACAGCAGCAGCAGCC...............................................................................................................21160.132011000
..........GCAGCAGCAGCCACAGCAGC...............................................................................................................................................................................................................2080.131000001
..................................................................................................................GCAGCAGCAGCCACAGCAG---C....................................................................................................2080.131000001
...........................AGCAACAGCAGCAGCAGCAACAGCA.........................................................................................................................................................................................25200.102011000
..............................................................................................CAGCAACAGCAGCAGCAACAGCAGCA.....................................................................................................................26130.081010000
...................................................................CAGCAACAGCA------------G---CAGCAACAGCAGCA.................................................................................................................................26130.081010000
.......................................................GC--A------ACAGCAACAGCA------------G---CAGCAACAGC.....................................................................................................................................26140.071010000
...................................................AACAGC--A------ACAGCAACAGCA------------G---CAGCAAC........................................................................................................................................27150.071000001
......................................................................CAACAGCA------------G---CAGCAACAGCAGCAGC...............................................................................................................................25200.051010000
............................................CAACAGCAACAGC--A------ACAGCAACAGCA------------G---C..............................................................................................................................................28200.051010000
.................................AGCAGCAGCAGCAACAGCAACAGC--..................................................................................................................................................................................24200.051000001
..........................................................................................G---CAGCAACAGCAGCAGCAACAGCAGA......................................................................................................................26200.051100000
.....................................................CAGC--A------ACAGCAACAGCA------------G---CA.............................................................................................................................................20200.051010000
........................................................C--A------ACAGCAACAGCA------------G---CAGCA..........................................................................................................................................20200.051100000
...........................................................A------ACAGCAACAGCA------------G---CAGCAACAGC.....................................................................................................................................24200.051010000
...........................................................................................................AGCAACAGCAGCAGCAGCC...............................................................................................................19200.051000001
................................................AGCAACAGC--A------ACAGCAACAGC................................................................................................................................................................21200.051001000
...............................................................................................AGCAACAGCAGCAGCAACA...........................................................................................................................19200.051010000
..............................................ACAGCAACAGC--A------ACAGCAAC...................................................................................................................................................................20200.051010000
.................................................................................................CAACAGCAGCAGCAACAGCAGCAGC...................................................................................................................25200.051010000
..................................................................................................AACAGCAGCAGCAACAGCA........................................................................................................................19200.051000001
..........................................................................................G---CAGCAACAGCAGCAGCAACAGC.........................................................................................................................23200.051010000
droBip1
AGCAGCAGCAGCAACAGCAG---TATCAGCAGCTGCAGCAGCATCAACAACTGCAGC--AGCA---TCAACAACAGCA------------A---CAGCATCAACAACAGCAGCAGCATCAAC------AACAG---CAGCATC------AACAACA------GCA-ACAGCATCAGCAAC---------TGC---A-------------GCAGCATCAGCAAC------AGC-----SizeHit CountTotal NormTotal
No Reads
droKik1
ACCAGCAGCAGCAGCACCAG---CAGCAGCAGCTCCAGCAGCAGCAGCACCAGCAGC--AGCA---CCACCAGCAGCA------------------GCAGCACCAGCAGCAGCAGCACCAGCAGCAGCAGCAC------CAGC------AGCAGCA------GCACACAGCAGCAGCAGC---------AAC---A-------------GCAGCAGCACCAAC------AGC-----SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAACATCAGCAGCAG---CAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGC--AGCA---ACAACAGCAGCA------------------ACAACAGCAGCAACAACAGCAGCAGCAGCAGCAACAG---CAGCAAC------AACAGCA------ACA-T------CAGAAAG---------AGC---A-------------GCAACATCAGCGGC------GGC-----SizeHit CountTotal NormTotal
No Reads
droEle1
AGCAGCAACAGCAGCAGCAG---CACCAGCAACATCATCAGCAACAGCAGCAGCAGC--AACA---TCACCAGCAGCA------------------GCAACAGCAACATCAGCAGCAGCAAC------AACAG---CAACAAC------AGCAACTGCAACAGCA-A------CAGCAAA---------TG------------GCGCCCGAA-------AAAC------CGCTCGAGSizeHit CountTotal NormTotal
No Reads
droRho1
AACAGCAGCAGCAACAACAG---CAGCAGCAACAACAACAGCAGCAGCAACAACAGC--AGCA---GCAACAACAACA------------GCAGCAGCAACAACAACAGCAGCAGCAACAAC------AGCAG---CAGCAAC------AACAGCA------GCA-ACAGCAACAACAAC------AACAGC---A-------------GCAACAGCAACAAC------AAC-----SizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCAACAGCAGCAGCAG---CAACACTAGCAGCAGCAACAGCAGCAGCAGCAAC--AACA---CCAGCAACA---------------------GCGACAGCAACAGCGACAGCAACAGCAGCTACGCCAG---CAGCAAC------AGCAGCA------GCA-ACAGCAGCAGCAGC---------GCC---A-------------GCAGCAGCAGCAACACT---CGC---AGSizeHit CountTotal NormTotal
No Reads
droTak1
ACCACAAGCAGGACAAGCAG---CAACAGCAGCAGCGACAGCAGCAGCGACAGCAGC--AACA---TCAACAGCAACA------------T---CAACAACATCAGCAACAACAGCAGCAGCGGCAGCAACA---------CC------GGCAACA------GCA-ACAGCAATACTAGC---------GACAGCA-------------GCAACACCAGCACC------ACC--ACGSizeHit CountTotal NormTotal
No Reads
droEug1
ACCAGCAGCATCAGCAGCAC---CAGCAGCACCAACAGCATCAGCAGCACCAGCAAC--AGCA---GCATCAGCAGCA------------------TCAACAGCATCAGCAACATCAGCAACATCAGCAGCAT---CAGCAAC------ACCAGCA------GCA-T------CAGCAACATCAGCAGCACC---A-------------GCAGCATCAGCAGC------AGG----GSizeHit CountTotal NormTotal
No Reads
dm3
ACCAGCAGCAGCAGCAGCAG---CAACATCAGCAGCAACAGCAGCAACAGCAGCAGC--AGCA---GCATCAACAGCA------------------GCAACAGCAGCAACATCAACAGCAGCAGCAGCAACAT---------CAGCAGCAGCAGCA------GCA-A------CACC------------ACC---A-------------GCAACAGCAGCAGC------A-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
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Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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....................................................................................................................................T---------CAGCAGCAGCAGCA------GCA-.......................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAGCAACAGCAGCAACAGCAGCAG.....................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCAGCAGCAG---CAACATC...............................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGCAGCAGCAGCAACAT---------C..............................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGCAACAGCAGCAACAGCAGCAGC--..................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................GCAACAT---------CAGCAGCAGCA....................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CAGCAGCAG---CAACATCAGC............................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................CAGCAACATCAACAGCAGC...................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................A------------------GCAACAGCAGCAACATC............................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAGCAGCAGCAGCAACAT---------CAGCA..........................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ATCAACAGCAGCAGCAGCA............................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................AGCAACATCAACAGCAGC...................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ACAGCA------------------GCAACAGCAGCAACA..............................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CAACAGCAGCAGCAGCAACA.........................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCAGCAGCAGCAG---CAACATCAG.............................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................AGCAGCAGCAGCA------GCA-A------CACC------------................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCAGCAGCAG---CAACATCAGCA...........................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................T---------CAGCAGCAGCAGCA------GCA-A------CA..............................................................21200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAGCAACAGCAGCAACAGCAGCAGC--A.................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AACAGCA------------------GCAACAGCAGCAA................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGCAACAT---------CAGCAGCAGCAGCA------G..........................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGCAGCAGCAG---CAACATCAG.............................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................CAGCAACAGCAGCAACAGCAGC.......................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACAGCAGCAACAGCAGCAGC--AGCA---...........................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AGCAGCAACAT---------CAGCAGCAG......................................................................................20200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGCAGCAACAGCAGCAACAGCAGCA......................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCAGCAG---CAACATCAGCA...........................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AGCA------------------GCAACAGCAGCAACA..............................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AACAGCAGCAACAGCAGCAGC--..................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................AGCAGCAACAGCAGCAAC.............................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGCAGCAACAGCAGCAGC--AGCA---...........................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................CAACAGCAGCAGC--AGCA---GCATC......................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................ATCAGCAGCAACAGCAGC................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGCAGCAGCAG---CAACATCA..............................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................AG---CAACATCAGCAGCAAC......................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GCAACAGCAGCAACAGCAGCAGC--..................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................AGCAGCAACAT---------CAGCAGCAGCAGC..................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.CCAGCAGCAGCAGCAGCA..........................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATCACCACCAACAGCAGCAG---CAGCAGCATCAACAGCAACAGCAGCAGCAACAGC--ATCAGCAGCAGCAGCAGCA------------------GCAACATCAACAGCAGCAACATCAACAGCAG---------CAACACC------AACAGCAGCAACAGCA-A------CAGAAGC------AGCTCC---A-------------GCAGCAGCAGCAGC------ATC---AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................GCAACAGC--ATCAGCAGCAGCA.....................................................................................................................................................................2150.20100000000001000000
............................................................................................................................................................................................CTCC---A-------------GCAGCAGCAGCAGC------........19180.06100000000000100000
..............................................................AGCAGCAGCAGCAGCA------------------GC...........................................................................................................................................18200.05100000000001000000
.....CACCAACAGCAGCAG---CAGCA.................................................................................................................................................................................................................20200.05110000000000000000
....................................AGCAACAGCAGCAGCAACA......................................................................................................................................................................................19200.05100000000000100000
droSec2
ATCAGCAGCAGCAGCTGCAG---CATCAGCAGCAGCAGCAGCTGCAGCATCAGCAGC--AGCA---GCAACATCAGCA------------G---CAACAAAATCAGCAGCAGCAGCAGCTACAACAG---------CAACATC------AGCAGCA------GCA-ACAGCTGCAGCATC---------AGCAGCA-------------GCATCAGCAGCAAC------A-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................CAGCATC---------AGCAGCA-------------GCATCAGCA...................2340.2510010
................GCAG---CATCAGCAGCAGCAGCAGC...................................................................................................................................................................................................23100.1010010
........................................................................................................................................CAACATC------AGCAGCA------GCA-ACAG...................................................................21110.0910001
............................................................GCA---GCAACATCAGCA------------G---CAAC...........................................................................................................................................20130.0810010
..............................................................................................................................G---------CAACATC------AGCAGCA------GCA-ACA....................................................................21160.0610010
..........................................................................................................................................ACATC------AGCAGCA------GCA-ACA....................................................................18200.0511000
...........................................................................................................................................CATC------AGCAGCA------GCA-ACAGC..................................................................19200.0510010
.............................................................................................................................AG---------CAACATC------AGCAGCA------GCA-A......................................................................20200.0510001
droYak3
AGCAACAGCAACAGCAGCAG---CAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGC--AACA---ACAGCAGCAGCA------------------GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG---------CAGCAGCAGCAGCA------GCA-A------CAGCAGC---------AGCAGCA----------GCAGCAGCAGCAACAAC------A------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................CAGCAGCAGCAGCAGCAGCAGCAGCAGC.............................................................................................................28200.7515000000000015
...........CAGCAGCAG---CAGCAGCAGCAGCAGCAGC...................................................................................................................................................................................................28200.7515000000000015
.................................................................................................................................................CAGCAGCAGCA------GCA-A------CAGCAGC---------AGC.............................................25200.30600000000006
...........................................................................GCA------------------GCAACAGCAGCAGCAGCAGCA........................................................................................................................24200.10202000000000
..........................................AGCAGCAACAGCAGC--AACA---ACAGCAGC...................................................................................................................................................................27150.07100100000000
......................................................AGC--AACA---ACAGCAGCAGCA------------------GCAACAGC.....................................................................................................................................27170.06100100000000
............................GCAGCAGCAGCAGCAGCAGCAAC..........................................................................................................................................................................................23200.05101000000000
.........................................................................................................................................................GCA------GCA-A------CAGCAGC---------AGCAGCA----------GCA............................24200.05100000010000
...AACAGCAACAGCAGCAG---CAGCAGCAG.............................................................................................................................................................................................................26200.05101000000000
........................................................................GCAGCA------------------GCAACAGCAGCAG................................................................................................................................19200.05101000000000
...............................................................................................................................................AGCAGCAGCAGCA------GCA-A------CAGCAGC---------A...............................................25200.05101000000000
................................................AACAGCAGC--AACA---ACAGCAGCAGC................................................................................................................................................................24200.05101000000000
..................................................................................................................................................................................GC---------AGCAGCA----------GCAGCAGCAGCAAC.................23200.05101000000000
.........................................................................................................................................................GCA------GCA-A------CAGCAGC---------AGCAGCA----------GC.............................23200.05101000000000
.................................AGCAGCAGCAGCAGCAACAGCAGC--A.................................................................................................................................................................................25200.05101000000000
.................................................................................................................................GCAG---------CAGCAGCAGCAGCA------GCA-A------CAGC............................................................26200.05101000000000
..................................................................ACAGCAGCAGCA------------------GCAACAGCAGCA.................................................................................................................................24200.05101000000000
............................GCAGCAGCAGCAGCAGCAGCAACAGC.......................................................................................................................................................................................26200.05101000000000
....ACAGCAACAGCAGCAG---CAGC..................................................................................................................................................................................................................20200.05100100000000
.GCAACAGCAACAGCAGCAG---CAGCAGCA..............................................................................................................................................................................................................27200.05101000000000
....ACAGCAACAGCAGCAG---CAGCAGCA..............................................................................................................................................................................................................24200.05101000000000
.................................................................................................................................GCAG---------CAGCAGCAGCAGCA------GCA-A------C...............................................................23200.05101000000000
droEre2
AGCATCAGCAGCAGCAGCAG---CAGCATCAACAGCAGCAGCAGCAGCAACAGCAGC--AACA---GCAGCAACAGCA------------------GCAGCAGCAACAACAGCAACAGCAGCAGCAGCAACA---------GCAGCAGCATCAACA------GCA-A------CAGCAGC---------AAC---A-------------GCAACAGCAGCAGC------AGTT----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................AAC---A-------------GCAACAGCAGCAGC------AGTT----2220.5010001000
..............................................................................................................................................................................................AC---A-------------GCAACAGCAGCAGC------AGTT----2120.5010000010
...............................................................................................................................................AGCAGCATCAACA------GCA-A------CA..............................................................1930.3310000100
...................G---CAGCATCAACAGCAGCAGCAGCAGC.............................................................................................................................................................................................2640.2510100000
..................................................................GCAGCAACAGCA------------------GCAGCAGC.....................................................................................................................................20200.1531000020
...........................................................AACA---GCAGCAACAGCA------------------GCA..........................................................................................................................................19200.1020002000
.....................................................CAGC--AACA---GCAGCAACAGCA------------------GCA..........................................................................................................................................23200.1021000100
.............................................................................................................................................................................................AAC---A-------------GCAACAGCAGCAGC------........18200.1020000020
...................................................................................................GCAGCAACAACAGCAACAGCAGCA..................................................................................................................24120.0810000010
.........AGCAGCAGCAG---CAGCATCAACA...........................................................................................................................................................................................................22120.0811000000
..........................CATCAACAGCAGCAGCAGCAGC.............................................................................................................................................................................................22160.0610001000
.....................................................................................................AGCAACAACAGCAACAGCAGCA..................................................................................................................22160.0610000010
...................................................................................................................................................................................................A-------------GCAACAGCAGCAGC------AGT.....18190.0511000000
......................................................................................................GCAACAACAGCAACAGCAGC...................................................................................................................20200.0510100000
...........................................GCAGCAACAGCAGC--AACA---GCAGCA.....................................................................................................................................................................24200.0510000100
......................................................AGC--AACA---GCAGCAACAGCA------------------GCAGCAGC.....................................................................................................................................27200.0511000000
......................................................AGC--AACA---GCAGCAACAGCA------------------.............................................................................................................................................19200.0510000100
...........................................................................................................................................................A------GCA-A------CAGCAGC---------AAC---A-------------GCA.........................19200.0510000100
.........................................................................................................ACAACAGCAACAGCAGCAGC................................................................................................................20200.0511000000
..................................................................................................................ACAGCAGCAGCAGCAACA---------GC..............................................................................................20200.0511000000
................................................................................................................CAACAGCAGCAGCAGCAACA---------GCA.............................................................................................23200.0510000010
.................................................................................................................AACAGCAGCAGCAGCAACA---------GCAGCA..........................................................................................25200.0510001000
...........................ATCAACAGCAGCAGCAGCA...............................................................................................................................................................................................19200.0510000010
.....................................GCAGCAGCAGCAACAGCA......................................................................................................................................................................................18200.0511000000
...................................................AGCAGC--AACA---GCAGCAACAGCA------------------GCAG.........................................................................................................................................26200.0511000000
........................................................................................................................GCAGCAGCAACA---------GCAGCAGCA.......................................................................................21200.0510001000
.......................................................................................................CAACAACAGCAACAGCAGCAG.................................................................................................................21200.0510001000
....................................................................AGCAACAGCA------------------GCAGCAGCA....................................................................................................................................19200.0510001000
..........................CATCAACAGCAGCAGCAGCA...............................................................................................................................................................................................20200.0510000010
......................................................................................................................................................................A------CAGCAGC---------AAC---A-------------GCAACAGC....................20200.0510100000
.......................................AGCAGCAGCAACAGCAGC--A.................................................................................................................................................................................19200.0510001000
........................................................................................................................GCAGCAGCAACA---------GCAGCAGC........................................................................................20200.0511000000
.................................................................................................................AACAGCAGCAGCAGCAACA---------GCAGC...........................................................................................24200.0510000010
.......................................................................................................CAACAACAGCAACAGCAGCA..................................................................................................................20200.0510100000
.................................AGCAGCAGCAGCAGCAACAGCAGC--..................................................................................................................................................................................24200.0510100000
..................................................................GCAGCAACAGCA------------------GCAGCAGCAA...................................................................................................................................22200.0511000000
..CATCAGCAGCAGCAGCAG---CAGCA.................................................................................................................................................................................................................23200.0510001000
.GCATCAGCAGCAGCAGCAG---CA....................................................................................................................................................................................................................21200.0510000010
.....................................................................GCAACAGCA------------------GCAGCAGCAACA.................................................................................................................................21200.0510000010
.............................................................................................................CAGCAACAGCAGCAGCAGC.............................................................................................................19200.0510100000
.......................................................................................................CAACAACAGCAACAGCAGC...................................................................................................................19200.0511000000
............................................................ACA---GCAGCAACAGCA------------------GCA..........................................................................................................................................18200.0510000100
............................................CAGCAACAGCAGC--AACA---GCAGCA.....................................................................................................................................................................23200.0511000000
...................................................................................................................CAGCAGCAGCAGCAACA---------GC..............................................................................................19200.0510000010
...................................................................CAGCAACAGCA------------------GCAGCAGCAAC..................................................................................................................................22200.0510100000
..........................................................................................................CAACAGCAACAGCAGCAGCAGCA............................................................................................................23200.0510001000

Generated: 05/19/2015 at 05:15 PM