dvi_11476

Name	Class	Family	Strand
Helitron-2_DVir	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGCGCTGGCATCAGTTTCCCGAGGAAACGCGAGAGCTAATCAAAAACAATGTAAGTACGGATTATGCTTGTCATTCCAGCTATACTCATTTTTAAAGCCTTAAAGAGAATATTACAATTTTGTCAGAAGATGTCTTACATGTTTAAGGAGACAACTCCGATCCCATAGTGTATATATCTTTTATCATAATCAATAGCCAAGTTGATATAGTCTGTCTGTCTTCTACGCAAACTAATCTTAATATAAAGAAA ************************************************.........(((((((..((.((........(((.((.(((((((....))))))))).)))........)).))((((((((..(((((......((((....)))).........))))).))))))))...)))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	SRR060663 160_0-2h_embryos_total	SRR060659 Argentina_testes_total	SRR060668 160x9_males_carcasses_total	SRR060669 160x9_females_carcasses_total	V116 male body	SRR060686 Argx9_0-2h_embryos_total	SRR060679 140x9_testes_total	SRR060682 9x140_0-2h_embryos_total	SRR1106726 embryo_14-16h
.........ATCAGTTTCCCGAGGAAACG..............................................................................................................................................................................................................................	20	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
.................CCCGAGGAAACGCGAGAGC.......................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................GGAAACGCGAGAGCTAATC..................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............TTCCCGAGGAAACGCGAGA.........................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GGAAACGCGAGAGCTAAT...................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................CGAGGAAACGCGAGAGCTAATC..................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............TTCCCGAGGAAACGCGAG..........................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................CTTACTAGTGTAAGGAGAC...................................................................................................	19	3	8	0.25	2	2	0	0	0	0	0	0	0	0	0
...................................................................................................................AATTTTGTCAGGAGTTGTC.....................................................................................................................	19	2	4	0.25	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................ATGACTAGCCAAGGTGATA............................................	19	3	15	0.07	1	0	0	0	0	0	0	0	1	0	0
.....................................................................GTCATTCCAGCTCCACT.....................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0	0	0
........CACCACTTTCCCGAGG...................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................GTTAAAGGAGACAACTGCAA...........................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0

TCGCGACCGTAGTCAAAGGGCTCCTTTGCGCTCTCGATTAGTTTTTGTTACATTCATGCCTAATACGAACAGTAAGGTCGATATGAGTAAAAATTTCGGAATTTCTCTTATAATGTTAAAACAGTCTTCTACAGAATGTACAAATTCCTCTGTTGAGGCTAGGGTATCACATATATAGAAAATAGTATTAGTTATCGGTTCAACTATATCAGACAGACAGAAGATGCGTTTGATTAGAATTATATTTCTTT ************************************************.........(((((((..((.((........(((.((.(((((((....))))))))).)))........)).))((((((((..(((((......((((....)))).........))))).))))))))...)))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060689 160x9_testes_total	SRR1106729 mixed whole adult body	SRR060681 Argx9_testes_total	SRR060669 160x9_females_carcasses_total	SRR060682 9x140_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	SRR060665 9_females_carcasses_total	SRR060674 9x140_ovaries_total
.....ATCGTGGTCAAAGGGCTAC...................................................................................................................................................................................................................................	19	3	20	0.50	10	10	0	0	0	0	0	0	0	0	0
................................................................................................................................CTGAAGAATGTATAAATTCC.......................................................................................................	20	3	13	0.38	5	0	0	0	1	1	1	1	1	0	0
......CCGTAGTCACAGGGC......................................................................................................................................................................................................................................	15	1	6	0.17	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................CTCTTATAATGTTAAAACAGC..............................................................................................................................	21	1	7	0.14	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................AAGAAAGCATTAGTTATCG......................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................AAAAAAATATTAGTTATCGGC....................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12963:12462410-12462660 -	dvi_11476	AGCGCTGGCATCAGTTTCC--------------C---GAGGAA-ACGCGAGAGCTAATCAA------------------------------------------------------------------------------------AAACAAT-GTA------------------AGTACGGAT-----------------------T-----------------ATGCTTGTCATTCC---------------------------------AGCTATAC-------T---------CATTTTTAAAGCCTTAA------------AGAGAATA-----------TTACAATTTTGTCAGA-------AGATGTCTTACATGTTTAAGGAGACAACTCCGATCCCATA--GTGTATATATCTTTTATCATAATCAATAGCCAAGTTGATATAGTC-TGTCTGTCT---------------TCTACGCAAACTAATCT-------------T-AATATAAAGAAA
droMoj3	scaffold_6500:29471275-29471445 +		AACGCTGGCATCAGTTTCC--------------T---GACGAA-GCCCGCGAACTTATAAAAAA----TA----------------------------------------------------------ATGTAAGAAATTGTTCGAGCT-AT------------ATAT---------A--------------------------------------------------------------------------------------------------------------------------------------------ATGAT-------------------------------------------------------CAGTTCAACAAACTTATTCTGTATTTGTATAGTTTATGT-------TTCACAATCAATAAGCA--TTAATTTC----------------------------------------------TTAATTTTATAGCTTATTCGAAATAA
droGri2	scaffold_14830:957658-957851 -		TAATCA----ACGATTTCG--------------------------------------------------------------------------------------------------------------------------------------------TAAATA---TTTAT----ATGA----------A----------------T-------------TTATG---------------T---------------------------ATGTTATACCCTGAACA---------CAT--------------TAAAAATGGGTAAAAGGGTAT-----------AATGTTTTTTTAGAA-------ATGTATGTAACAGGCAGAAGGAAACATCTCCGACCACATTAAGTATATATATTCTTGATCAGGATCAACAGCCGAATCGATATAGACATGTCCGTCTGTC--------------------------------------------------------
droWil2	scf2_1100000004943:5575428-5575636 +		TAGAATAAAAT-----TGT--------------T---GATAAA-AAGCTAAAAATTGAAAAGG---------------------------------------------------------------AA-------------------AA--G-ATA------------------T---------------------------------ATA------CATATTTATT---------------A---------------------------TTTTTATACCATACACC---------CAT--------------A------GGGTGAAATGGTAT-----------ATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTC------------------------------------------------------------
dp5	Unknown_group_180:21138-21361 -		AATT------------TCC--------------TGAG---G--CTAACGAATGTTGATCGA------------------------------------------------------------------------------------AAACAATTGTT------------------AATATGGTGCTTTCAAAAT-------------GTT-------------T---------------CATGA---------------------------TTTTTATACCCGATACT---------CAA--------------A----ATGAGTATTGGGGTAT-----------ATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTTATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTC------------------------------------------------------------
droPer2	scaffold_139:95380-95604 -		AATT------------TCC--------------TGAG---G--CTAACGAATGTTGATCGA------------------------------------------------------------------------------------AAACAATTGTT------------------AATATGGTGCTTTCAAAAT-------------TTT-------------T---------------CATGA---------------------------TTTTTATACCCGATACT---------CAA--------------A----ATGAGTATTGGGGTAT-----------ATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTTATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCT-----------------------------------------------------------
droAna3	scaffold_13010:236805-237050 -		ATTA---------GTTTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AACCATT-TTG---AAA---------------------------AATATGCGATTTTGAATTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------TCGGAGGTACCATTTTTATACCCTTGC------------AGAGGGTA-----------TTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTC--------CGTTTCTACGTAACCTAGTCT---------------------------
droBip1	scf7180000396515:29016-29271 +		AACGGCGGCAACAATATTA--------------G---GAGCAG-CAGCGGCAGCG-----ACAACAACATAAGCAGCAGAAAAAATTAGAAATTATAGTCTTCGGC----------------------------------------------------------------------------------------------------------------A-----AGT---------------T---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TTATAATTTTGGTCAA-------AAGTATGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTTTCTACGCAAACTAGTCT---------------------------
droKik1	scf7180000301933:3046-3287 -		GGA------------------------------------------------AATTAATCGA------------------------------------------------------------------------------------AAATAATTATA------------------ACTTCGTT------------------------------------------------------------GTTTTTATACCCTTGCAGGGTATTATAATTTT----------------------------TATACCCTTGC--------------AGGGTA-----------TTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCC-TGTTTCT-----AG----TCTGTTTCTACGCAAACTAGTCCCTCAGTTTTAAAGC-TATCTGAATGAA
droFic1	scf7180000453294:26412-26661 -		AGCACTGGCAACGGTG-CC--------------T-------------------------------------------------------------------TCGGCTATGTGAGATAATGATTTGGAT-------------------GG--T-GTA-----ATTACAT---------GTTGTTTCTTAACCTA-------------ATA-------------A---------------TCATA---------------------------TTAT----------------------------TATACCCTTGCA------GAGCAAAAGGGTA-----------TTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGTAGAATCAGAATACGTCTGTCCGTCTG--------TCTGTTTCTCCTCAAACTAGTCT---------------------------
droEle1	scf7180000490523:6673-6938 -		CGCGCACGCCTTAGCCTGCGCCAAAAACAACGCA---AAAAAA-AAACAAAAAAT-----------------------A---------------------------TATGTTA-------------AA-----AGC---------ATAAATTTAT----TAAATG---TTTATAAA-TTGA----------AT-------------TTC-------------T---------------GA-TG---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TGATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATTACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCG----TCCGTTTCTACGCAAACTAGTCT---------------------------
droRho1	scf7180000763358:839-1053 +		CGAGACAGCAGCCGAATA---------CTA---C---GCGGAA-ATTCCAGATTT-CGAACAAG----AAACA-----GAGGAA---------------------------------------------------------------ACCGA---A--------------------------------------------------T-ATA------CTGGCCTTTA---------------T---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TTATAATTTTGGTCAG-------AAGTCTGTAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCT-----------------------------------------------------------
droBia1	scf7180000301509:16993-17219 -		CAAGAA------------------------------------A---------AT---------------T----------------------------------------------------------ATAAAAGTAATCACTTGAACCAAT------------ATAT---------ATGGGTTTCTCATAAA-------------CTA-------------T---------------TCTTG---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TAATGATTTCAGTCAG-------AAGTTTGCAACGCTGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTCTCCG----TCCGTTTCTACGCAAACTAGTCT---------------------------
droTak1	scf7180000412836:28220-28471 +		AACGATCGCAAAATT--AA--------------T---G----------GGAAATTAATTGG------------------------------------------------------------------------------------AAACAAATT------------------------------------------------------ATAGCTCCGTTGGTTTTTA--TTGTATTCT----A---TTATAC----------------------------------TCTAGGATATGATTTTTATACCCTTGC------------AGAGGGTA-----------TTATGATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCG----TCCGTTTCTACGCAAACTAGTCT---------------------------
droEug1	scf7180000407331:66348-66557 +		GGCCTTGGCC------TCC--------------TAAG---GTACTCGTGAAAGTTGTATTA------------------------------------------------------------------------------------TAAATATTGTT------------------ATTAT-----------------------------T-------------ATATA---------------A---------------------------TTTTTATACCTGTTGTT---------CGT--------------A------GAGTAAAAGGGTAA-----------ATTAGATTCGTTGAA-------AAGCATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTGT--ATATTCTTGATCAGTATCTATAGCGAAGACGATTTAGCCATGTCCGTCTGTCT-------------------------------------------------------
dm3	chr2L:21583399-21583577 +		AAACCA------------------------------------------------------------------------------------------------------------------------------------------------AT-GTA-----------T-GGCC--------GTTACGCA---------------------------------T----CTTGTTATTCT----------------------------------------------------------------AGTGTCTTT----------GGTAAAAGGGTATATATATACTATAATAGATTCGTTGAA-------AAGGTTTTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTAT--ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCT-----------------------------------------------------------
droSim2	2r:2156636-2156793 -		CATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATACCTGTTACT---------CGT--------------A------GAGCAAAAGGGTATA---------TTCCAAATTCATTGAA-------AAGCATGTATCATGTATAAGGAAGCGTTTCCGGCCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCAAGTCGAAGTGGCAATGTCCGTCTGTCT-------------------------------------------------------
droSec2	scaffold_18:1198647-1198841 +		TAATCA------------------------------------------------------A------------------------------------------------------------------------------------GATCAATAGTCGAGTCGATA---TGGCC---------------ATGAC-------------T-G-------------T---------------CTTGA---------------------------TATTTTTATCCGATACT---------CGT--------------A------GAGTAAAAAGGTAT-----------ACTATATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGATCGTATAAAGTGTATATATTCTTGATCAGGATCAATAACCAAGTCGATCTGTCTATATCCGTCTGTC--------------------------------------------------------
droYak3	X:586125-586337 +		AGAGCAAGAAAGAAGTCGA--------------T---GAGGAA-TAGCGGAAGAGGGAGAAAG-----AAGAT-----GAGGAG-------------------------------------------------GGCGAGCAC----------------------------------------------------------------------------------------------------T---------------------------TCATTATACCCGTTACT---------CGT--------------A------GAGTAAAAGGGTAT-----------ACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAGGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCT-----------------------------------------------------------
droEre2	scaffold_4820:3865619-3865856 +		GGCAGTGAGT------TTC--------------TGAA---AAA--------------------------------------------------------------------------------------------------------ACGAAC-----------C---GCA---AATAGAGTTCATGCAAGAGTGCA-----------A-------------T---------------CATG-----------------------------AATTATACCCGTTGCT---------CGT--------------A------GAGTAAAAGGGTAT-----------ACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCGTATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCCG------------TATGAACGCAAAATGAGAA-------------C-AGGCGAACGAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AGCGCTGGCATCAGTTTCC--------------C---GAGGAA-ACGCGAGAGCTAATCAA------------------------------------------------------------------------------------AAACAAT-GTA------------------AGTACGGAT-----------------------T-----------------ATGCTTGTCATTCC---------------------------------AGCTATAC-------T---------CATTTTTAAAGCCTTAA------------AGAGAATA-----------TTACAATTTTGTCAGA-------AGATGTCTTACATGTTTAAGGAGACAACTCCGATCCCATA--GTGTATATATCTTTTATCATAATCAATAGCCAAGTTGATATAGTC-TGTCTGTCT---------------TCTACGCAAACTAATCT-------------T-AATATAAAGAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........ATCAGTTTCC--------------C---GAGGAA-ACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
.................CC--------------C---GAGGAA-ACGCGAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GGAA-ACGCGAGAGCTAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............TTCC--------------C---GAGGAA-ACGCGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GGAA-ACGCGAGAGCTAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................C---GAGGAA-ACGCGAGAGCTAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTCC--------------C---GAGGAA-ACGCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACGCTGGCATCAGTTTCC--------------T---GACGAA-GCCCGCGAACTTATAAAAAA----TA----------------------------------------------------------ATGTAAGAAATTGTTCGAGCT-AT------------ATAT---------A--------------------------------------------------------------------------------------------------------------------------------------------ATGAT-------------------------------------------------------CAGTTCAACAAACTTATTCTGTATTTGTATAGTTTATGT-------TTCACAATCAATAAGCA--TTAATTTC----------------------------------------------TTAATTTTATAGCTTATTCGAAATAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................CC--------------T---GACGAA-GCCCGCGAACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

TAATCA----ACGATTTCG--------------------------------------------------------------------------------------------------------------------------------------------TAAATA---TTTAT----ATGA----------A----------------T-------------TTATG---------------T---------------------------ATGTTATACCCTGAACA---------CAT--------------TAAAAATGGGTAAAAGGGTAT-----------AATGTTTTTTTAGAA-------ATGTATGTAACAGGCAGAAGGAAACATCTCCGACCACATTAAGTATATATATTCTTGATCAGGATCAACAGCCGAATCGATATAGACATGTCCGTCTGTC--------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TAGAATAAAAT-----TGT--------------T---GATAAA-AAGCTAAAAATTGAAAAGG---------------------------------------------------------------AA-------------------AA--G-ATA------------------T---------------------------------ATA------CATATTTATT---------------A---------------------------TTTTTATACCATACACC---------CAT--------------A------GGGTGAAATGGTAT-----------ATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTC------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAACAACCGAGTCGATCT.........................................................................	25	20	0.30	6	0	6	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATTCTTGATCAGGATCAAC.......................................................................................	26	20	0.20	4	0	0	0	4	0
.......................................................................................................................................................................................................................................................................................................................................................................A-------ATGTATGTAACAGGCAGAAGGAAG....................................................................................................................................	25	20	0.20	4	0	4	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAACAACCGAG................................................................................	25	20	0.15	3	0	3	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAACAACC...................................................................................	22	20	0.10	2	2	0	0	0	0
..................................................................................................................................................................................................................................T---------------A---------------------------TTTTTATACCATACACC---------CAT--------------A------GGG........................................................................................................................................................................................................	26	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCATCTCCGA...........................................................................................................................	24	20	0.10	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................TATACCATACACC---------CAT--------------A------GGGTGA.....................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCATC................................................................................................................................	22	20	0.05	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................ATACCATACACC---------CAT--------------A------GGGTG......................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................TT---------------A---------------------------TTTTTATACCATACACC---------CAT--------------A------GGG........................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................AAA-------ATGTATGTAACAGGCAGAAGG.......................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................A-------ATGTATGTAACAGGCAGA..........................................................................................................................................	19	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................AT-----------ATTAAAGTCGCCAAA-------ATGTATGT....................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................ACC---------CAT--------------A------GGGTGAAATGGTAT-----------A.................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATC................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCATCTCCGACCCCACAAAG.................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................GTGAAATGGTAT-----------ATTAAAGTCGCC......................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................AA-------ATGTATGTAACAGGCAGAAG........................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................GGTAT-----------ATTAAAGTCGCCAAA-------ATGT........................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................T-----------ATTAAAGTCGCCAAA-------ATGTATG.....................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................GAAATGGTAT-----------ATTAAAGTC.........................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTCCG............................................................................................................................	24	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCGAGTCGATCTAGCCATGTC................................................................	27	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAACAACCGAGTCGA............................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATC................................................................................................................................	21	20	0.05	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAG....................................................................................................................................	24	20	0.05	1	0	1	0	0	0

dp5

AATT------------TCC--------------TGAG---G--CTAACGAATGTTGATCGA------------------------------------------------------------------------------------AAACAATTGTT------------------AATATGGTGCTTTCAAAAT-------------GTT-------------T---------------CATGA---------------------------TTTTTATACCCGATACT---------CAA--------------A----ATGAGTATTGGGGTAT-----------ATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTTATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTC------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGT......................................................................................................................................................	22	20	2.75	55	0	0	55	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AGTGGATGTGTGTAACGTCC.............................................................................................................................................	20	20	0.65	13	0	13	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATG.........................................................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	6	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTTATCAGCATC..........................................................................................	21	15	0.27	4	0	2	0	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCAGCATCAATAGCCGAGTCGA............................................................................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCAGCATCAATAGCCGAGTCG.............................................................................	25	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTCCGACCCCATAAAG.................................................................................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACGTC..............................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	4	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCCTGTC................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	4	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGCATCAATAGCCGAGT...............................................................................	22	10	0.20	2	0	0	2	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTTATACCCGATACT---------CAA--------------A----ATGAG........................................................................................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AA--------------A----ATGAGTATTGGGGTAT-----------AT................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................T-----------ATTAGATTTGTGGTAAAAGTGGATG.........................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTTATCAGCATCA.........................................................................................	21	14	0.14	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCAGCATCAATAGCCGAGTC..............................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCC.............................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCG............................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTAACGT...............................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTTATCAGCATCAATAGCCGA.................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TGA---------------------------TTTTTATACCCGATACT---------CAA--------------A----A............................................................................................................................................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGAC..........................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTAACGTC..............................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATAT............................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTC.....................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TGAGTATTGGGGTAT-----------ATTAGATTTG........................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................ACT---------CAA--------------A----ATGAGTATTGGGGTAT-----------ATT...............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GATGTGTGTAACGTCCAGAAGGAAT....................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGCCCT...................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

AATT------------TCC--------------TGAG---G--CTAACGAATGTTGATCGA------------------------------------------------------------------------------------AAACAATTGTT------------------AATATGGTGCTTTCAAAAT-------------TTT-------------T---------------CATGA---------------------------TTTTTATACCCGATACT---------CAA--------------A----ATGAGTATTGGGGTAT-----------ATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTTATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCT-----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTG.......................................................................................................................................................	19	20	1.60	32	0	0	0	0	0	32
.................CC--------------TGAG---G--CTAACGAATGTTGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATCAGCATCAATAGCCGAGTCG.............................................................................	27	12	0.08	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATCAGCATCAATAGCCGAGTC..............................................................................	26	14	0.07	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTTATCAGCATC..........................................................................................	21	19	0.05	1	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................GTATTGGGGTAT-----------ATTAGATTTGTG......................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AAAAGTGGATGTGTGTAA..................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0

droAna3

ATTA---------GTTTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AACCATT-TTG---AAA---------------------------AATATGCGATTTTGAATTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------TCGGAGGTACCATTTTTATACCCTTGC------------AGAGGGTA-----------TTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTC--------CGTTTCTACGTAACCTAGTCT---------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATCACCTC.....................................................................................	21	20	4.55	91	0	0	0	0	0	91
..............TTTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AACC......................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.15	23	1	22	0	0	0	0
...............TTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AACC......................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.30	6	0	6	0	0	0	0
.............................................................................................................................................................................................................TTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------TCGGAG.......................................................................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................................................................................................TGAATTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------TC...........................................................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCTCCTGAGTCGATATG........................................................................	21	20	0.10	2	0	0	0	0	0	2
.............GTTTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................TACCATTTTTATACCCTTGC------------AGAG..................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................................................GGCGCGGTTG---------------------------TAAAG----------------------------------TCGGAGGTA....................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................TGAATTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------T............................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
............................................A---------TGAACGA------------------------------------------------------------------------------------AACCATT-TTG---AAA---------------------------AATATG........................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTG---------------------------TAAAG----------------------------------TCGGAGGTACCATTTTTA...........................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..TA---------GTTTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AA........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................TAAAG----------------------------------TCGGAGGTACCATTTTTA...........................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.................CT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AACCATG-..................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................GAATTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------T............................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AACCAT....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
ATTA---------GTTTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AACC......................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
ATTA---------GTTTCT--------------T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.................................T---GTGCGG-A---------TGAACGA------------------------------------------------------------------------------------AAC.......................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................TTTTGGCGCGGTTG---------------------------TAAAG----------------------------------TCGGAG.......................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................TTTTGAATTTTTGGCGCGGTTG---------------------------TA..................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................TATGCGATTTTGAATTTTTGGCGCGGT.................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................TTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------TCG..........................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................TGGCGCGGTTG---------------------------TAAAG----------------------------------TCGGA........................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................TTTGAATTTTTGGCGCGGTTG---------------------------TAAAG----------------------------------T............................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................AA---------------------------AATATGCGATTTTGAATTTTTGGC......................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TTGGTCAA-------AAGTGTGCAACGCAGTGAA.........................................................................................................................................	27	20	0.05	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................TG---------------------------TAAAG----------------------------------TCGGAGGTACCATTTT.............................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................A---------------------------AATATGCGATTTTGAATTTT..........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAGTCGATATGAGCATGTCCGT.............................................................	26	20	0.05	1	0	0	0	1	0	0
........................................................................................................................................................................................................................GTTG---------------------------TAAAG----------------------------------TCGGAGGTACCA.................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droBip1

AACGGCGGCAACAATATTA--------------G---GAGCAG-CAGCGGCAGCG-----ACAACAACATAAGCAGCAGAAAAAATTAGAAATTATAGTCTTCGGC----------------------------------------------------------------------------------------------------------------A-----AGT---------------T---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TTATAATTTTGGTCAA-------AAGTATGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCTGTTTCTACGCAAACTAGTCT---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGA------------------------------------------------AATTAATCGA------------------------------------------------------------------------------------AAATAATTATA------------------ACTTCGTT------------------------------------------------------------GTTTTTATACCCTTGCAGGGTATTATAATTTT----------------------------TATACCCTTGC--------------AGGGTA-----------TTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCC-TGTTTCT-----AG----TCTGTTTCTACGCAAACTAGTCCCTCAGTTTTAAAGC-TATCTGAATGAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCACTGGCAACGGTG-CC--------------T-------------------------------------------------------------------TCGGCTATGTGAGATAATGATTTGGAT-------------------GG--T-GTA-----ATTACAT---------GTTGTTTCTTAACCTA-------------ATA-------------A---------------TCATA---------------------------TTAT----------------------------TATACCCTTGCA------GAGCAAAAGGGTA-----------TTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGTAGAATCAGAATACGTCTGTCCGTCTG--------TCTGTTTCTCCTCAAACTAGTCT---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGCGCACGCCTTAGCCTGCGCCAAAAACAACGCA---AAAAAA-AAACAAAAAAT-----------------------A---------------------------TATGTTA-------------AA-----AGC---------ATAAATTTAT----TAAATG---TTTATAAA-TTGA----------AT-------------TTC-------------T---------------GA-TG---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TGATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATTACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCG----TCCGTTTCTACGCAAACTAGTCT---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGAGACAGCAGCCGAATA---------CTA---C---GCGGAA-ATTCCAGATTT-CGAACAAG----AAACA-----GAGGAA---------------------------------------------------------------ACCGA---A--------------------------------------------------T-ATA------CTGGCCTTTA---------------T---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TTATAATTTTGGTCAG-------AAGTCTGTAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCT-----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAGAA------------------------------------A---------AT---------------T----------------------------------------------------------ATAAAAGTAATCACTTGAACCAAT------------ATAT---------ATGGGTTTCTCATAAA-------------CTA-------------T---------------TCTTG---------------------------TTTT----------------------------TATACCCTTGC------------AGAGGGTA-----------TAATGATTTCAGTCAG-------AAGTTTGCAACGCTGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTCTCCG----TCCGTTTCTACGCAAACTAGTCT---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACGATCGCAAAATT--AA--------------T---G----------GGAAATTAATTGG------------------------------------------------------------------------------------AAACAAATT------------------------------------------------------ATAGCTCCGTTGGTTTTTA--TTGTATTCT----A---TTATAC----------------------------------TCTAGGATATGATTTTTATACCCTTGC------------AGAGGGTA-----------TTATGATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCG----TCCGTTTCTACGCAAACTAGTCT---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGCCTTGGCC------TCC--------------TAAG---GTACTCGTGAAAGTTGTATTA------------------------------------------------------------------------------------TAAATATTGTT------------------ATTAT-----------------------------T-------------ATATA---------------A---------------------------TTTTTATACCTGTTGTT---------CGT--------------A------GAGTAAAAGGGTAA-----------ATTAGATTCGTTGAA-------AAGCATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTGT--ATATTCTTGATCAGTATCTATAGCGAAGACGATTTAGCCATGTCCGTCTGTCT-------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAACCA------------------------------------------------------------------------------------------------------------------------------------------------AT-GTA-----------T-GGCC--------GTTACGCA---------------------------------T----CTTGTTATTCT----------------------------------------------------------------AGTGTCTTT----------GGTAAAAGGGTATATATATACTATAATAGATTCGTTGAA-------AAGGTTTTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTAT--ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCT-----------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................CA---------------------------------T----CTTGTTATTCT----------------------------------------------------------------AGTGTCTTT----------GG........................................................................................................................................................................................................	25	20	30.65	613	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	447	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	80	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................T----CTTGTTATTCT----------------------------------------------------------------AGTGTCTTT----------GGT.......................................................................................................................................................................................................	24	20	16.20	324	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	95	0	115	0	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CA---------------------------------T----CTTGTTATTCT----------------------------------------------------------------AGTGTCTTT----------GGT.......................................................................................................................................................................................................	26	20	7.80	156	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CA---------------------------------T----CTTGTTATTCT----------------------------------------------------------------AGTGTCTTT----------G.........................................................................................................................................................................................................	24	20	6.95	139	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCG.............................................................................	25	20	3.75	75	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	7	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATAATAGATTCGTTGAA-------AAGGTTT.....................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CA---------------------------------T----CTTGTTATTCT----------------------------------------------------------------AGTGTCTTT----------..........................................................................................................................................................................................................	23	20	2.90	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGA............................................................................	26	20	2.85	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	24	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGGC......................................................................	26	20	2.55	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGCCATGTCCGTC............................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGA.................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGA.................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGTCCGT.............................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................T-GTA-----------T-GGCC--------GTTACGCA---------------------------------T----CTTGTTA.................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGAGTC..............................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACCATATAAAGTAT--............................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTCGA............................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATACCTGTTACT---------CGT--------------A------GAGCAAAAGGGTATA---------TTCCAAATTCATTGAA-------AAGCATGTATCATGTATAAGGAAGCGTTTCCGGCCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCAAGTCGAAGTGGCAATGTCCGTCTGTCT-------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................CGT--------------A------GAGCAAAAGGGTA..............................................................................................................................................................................................	17	8	5.25	42	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGT--------------A------GAGCAAAAGGG................................................................................................................................................................................................	15	8	3.75	30	0	0	0	0	0	0	0	29	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGT--------------A------GAGCAAAAGGGT...............................................................................................................................................................................................	16	8	1.38	11	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGTCGAAGTGGCAATGTC................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGAAGT.........................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................T--------------A------GAGCAAAAGGGTA..............................................................................................................................................................................................	15	12	0.92	11	0	0	0	0	0	0	0	10	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATC..........................................................................................	24	20	0.85	17	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGT--------------A------GAGCAAAAGGGTAA.............................................................................................................................................................................................	18	19	0.53	10	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GT--------------A------GAGCAAAAGGGTA..............................................................................................................................................................................................	16	11	0.45	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TACT---------CGT--------------A------GAGCAAAAGGGTATA---------...................................................................................................................................................................................	23	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGT--------------A------GAGCAAAAGGGC...............................................................................................................................................................................................	16	18	0.22	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GT--------------A------GAGCAAAAGGGC...............................................................................................................................................................................................	15	20	0.15	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................T---------CGT--------------A------GAGCAAAAGGGT...............................................................................................................................................................................................	17	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................T---------CGT--------------A------GAGCAAAAGGGTAT.............................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGA............................................................................	28	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGC............................................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGA............................................................................	21	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GT--------------A------GAGCAAAAGGGTAA.............................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGG.............................................................................................	25	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGA............................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GT--------------A------GAGCAAAAGGGT...............................................................................................................................................................................................	15	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCAAGTC..............................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATATATTCTTGATCAGG.............................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................A------GAGCAAAAGGGTAA.............................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCAAGTCA.............................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAAGTATATATATT.......................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAAT.......................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATCAATAG.....................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCAAGTCGA............................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AGTATATATATTCTTGATCAGGATC..........................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

TAATCA------------------------------------------------------A------------------------------------------------------------------------------------GATCAATAGTCGAGTCGATA---TGGCC---------------ATGAC-------------T-G-------------T---------------CTTGA---------------------------TATTTTTATCCGATACT---------CGT--------------A------GAGTAAAAAGGTAT-----------ACTATATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGATCGTATAAAGTGTATATATTCTTGATCAGGATCAATAACCAAGTCGATCTGTCTATATCCGTCTGTC--------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................ATCAATAGTCGAGTCGATA---TGGCC---------------...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTCCGATCGTATAAAGT................................................................................................................	26	3	0.33	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGG..............................................................................................................................................	23	20	0.10	2	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATATATTCTTGATCAGGATC..........................................................................................	24	10	0.10	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAG...............................................................................................................................................	22	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCC.............................................................................................................................	24	20	0.05	1	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGTTTCCGA...........................................................................................................................	23	20	0.05	1	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAGA..........................................................................................................................................	27	20	0.05	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCAG...........................................................................................................................................	25	20	0.05	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTT...............................................................................................................................	24	20	0.05	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGG..............................................................................................................................................	22	20	0.05	1	0	1	0	0

droYak3

AGAGCAAGAAAGAAGTCGA--------------T---GAGGAA-TAGCGGAAGAGGGAGAAAG-----AAGAT-----GAGGAG-------------------------------------------------GGCGAGCAC----------------------------------------------------------------------------------------------------T---------------------------TCATTATACCCGTTACT---------CGT--------------A------GAGTAAAAGGGTAT-----------ACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAGGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCT-----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGTC..............................................................................	27	20	1.45	29	0	29	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGCCATGTCCGTC............................................................	26	20	0.75	15	0	0	15	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACCATATA....................................................................................................................	27	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GTAAAAGGGTAT-----------ACTAGATTCGTTGAA-------AA..........................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCCGAC..........................................................................................................................	29	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGT.................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GGGTAT-----------ACTAGATTCGTTGAA-------AAGTATG.....................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAAGGTATA.............................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTGGC......................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGCCATGTCCGTCT-----------------------------------------------------------	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GGCAGTGAGT------TTC--------------TGAA---AAA--------------------------------------------------------------------------------------------------------ACGAAC-----------C---GCA---AATAGAGTTCATGCAAGAGTGCA-----------A-------------T---------------CATG-----------------------------AATTATACCCGTTGCT---------CGT--------------A------GAGTAAAAGGGTAT-----------ACTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCGTATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCCG------------TATGAACGCAAAATGAGAA-------------C-AGGCGAACGAAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAGA..........................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	3
............................................................................................................................................................................................................................................................................................GCT---------CGT--------------A------GAGTAAAAGGGT...............................................................................................................................................................................................	19	17	0.12	2	0	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATTT.........................................................................	24	11	0.09	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTTGGCCATGTCC...............................................................	21	12	0.08	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCAATAGCCGAGTCGATT..........................................................................	21	14	0.07	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................AAGGGTAT-----------ACTAGATTCGTTGA....................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................GTAAAAGGGTAT-----------ACTAGATTCGT.......................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................T--------------A------GAGTAAAAGGGTAT-----------ACTAGATTCGT.......................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................GAA-------AAGTATGTAACAGGCAGA..........................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0

dvi_11476

scaffold_12963:12462460-12462610 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads