ID:

dvi_11360

 Coordinate:

scaffold_12963:11378203-11378353 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.9 -16.3 -16.1

Flybase annnotation

exon [dvir_GLEANR_1978:2]; CDS [Dvir\GJ17379-cds]; intron [Dvir\GJ17379-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAAACATGCTGTAGCTATGTGGAGAAAAATGAGTATGTTGGGCTTATGTTTTCTTTCCATGAACAATTCGTTTTGCCCTTGATCAAGGAGAAGTGTGGGGTATGCCTTGCTCACCCAAAAGGTTCCAGTAGCAACAACAGAAGCCTTCATTATCGATATCCCTTACTCATTTGACATCTTTGTTTTATTTGCATTTGCAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAAGATAAACCCGCTGATGG
***********************************************************************************.((((((..((((.(((((((((..((((.(((.....)))...))))))).......................)))))).)))).........)))))).******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060674
9x140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 V116
male body		 SRR060660
Argentina_ovaries_total
 GSM1528803
follicle cells		 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
.............AGCTATGTGGAGAAAAAT............................................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCCAAGAAAGATAAACCCGCT..... 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................TGTGGAGAAAAATGAGTATG..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................TTGGGCTTATGTTTTCTTTACATG............................................................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................TCAAGGAGAAGTGTGGGGTA.................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTACTCATTTGACATCTTTGT................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAAAGAAAGCCAAGAAAG................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATCAAAGAAAGCCAAGAAAGATAAACC......... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGCTAAATCCGCCGAATCAAAGAA........................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATCCGCCGAATCAAAGAAAGCCAAG.................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATCAAAGAAAGCCAAGAAAGAT.............. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GTATGTTGGGCTTATGTTTTCTT................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAGAAAGATAAACCCGCT..... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATCAAAGAAAGCCAAGAAA................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATCCGCCGAATCAAAGAAAGCCAAG.................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAATCCGCCGAATCAAAGAAAGC........................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAAGAAAGATAAACCCGCTGAT.. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAGAAAGTCAAGAAAGAT.............. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................GCCAAGAAAGATGAACTC........ 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATGAACATGTCGTTTTGCCA............................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................TGATCAAGCAGAAGT............................................................................................................................................................ 15 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............GCTAAGTGGAGAAAGAAGAG......................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............AGCTAAGTGGAGAAAGAAGA.......................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................TAAGGGGAAGTATGGGGT..................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................TGCGCTTGATCAAGGATAG.............................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TATTTGTACGACATCGATACACCTCTTTTTACTCATACAACCCGAATACAAAAGAAAGGTACTTGTTAAGCAAAACGGGAACTAGTTCCTCTTCACACCCCATACGGAACGAGTGGGTTTTCCAAGGTCATCGTTGTTGTCTTCGGAAGTAATAGCTATAGGGAATGAGTAAACTGTAGAAACAAAATAAACGTAAACGTCCGATTTAGGCGGCTTAGTTTCTTTCGGTTCTTTCTATTTGGGCGACTACC
*******************************************************************.((((((..((((.(((((((((..((((.(((.....)))...))))))).......................)))))).)))).........)))))).*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060680
 9xArg_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 V116
male body		 SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060657
140_testes_total
 M061
embryo
 SRR060659
Argentina_testes_total
 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
.............................................................................................................................................................................................................TTAGGCGGCTTAGTTTCTTTCGGTTCT................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCGGTAGTAAGAGCTATAGGGT....................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCGGTAGTAATTGCTATAGGGT....................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AAAAAAGAGGTACTCGTTAAG..................................................................................................................................................................................... 21 3 8 0.75 6 0 0 1 0 0 0 0 0 2 1 1 0 1 0 0 0 0 0
..................................................................................................................................TCGTTGTTGCCTTAGGAACTA.................................................................................................... 21 3 3 0.67 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CCGTAGTAATAGCTATAGGGT....................................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGTTGTTGCCTTAGGAACTAA................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GCGGTAGTAATAGCTATAGGGT....................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCGTTGTTGCCTTAGGAACTAA................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGGTAGTAATAGCTACAGGGC....................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCGGTTGTAATAGCTATAGGGC....................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAAAAAAGGTACTCGTTAAG..................................................................................................................................................................................... 20 2 6 0.33 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0
....................................................AGAGAGGTACTCGTTAAG..................................................................................................................................................................................... 18 2 9 0.33 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................GATGTAATAGCTACAGGG........................................................................................ 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................AAGAAAGGTACTCGTTAAG..................................................................................................................................................................................... 19 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCGGTAGTAATAGCTGTAGGGT....................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGGACGTAACAGCTATTGGGA....................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AAAAGCGAGGTACTCGTTAAG..................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................AAGAGAGGTACTCGTTAAG..................................................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGTAGTAATTGCTATAGGGT....................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGTTGTTGCCTTAGGAACTA.................................................................................................... 20 3 10 0.20 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................AACTCTAGAAACAAAATAGACGGAA....................................................... 25 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................GGAAGTAAAAGCTATTGG......................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................GGTAGTAATAGCTGTAGGGC....................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTTAGTTCCTTTCGGTTC.................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................AAAGGTACTCGTTAAGGA................................................................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................CGTAGTAATAGCTATAGGGC....................................................................................... 20 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTTTCTATTTGCGCGACGGC. 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GCAGTAATAGCTACAGGGC....................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAAAACAGGTACTCGTTAAG..................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................GAAGCAATAGCTAAAGGGT....................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:11378153-11378403 + dvi_11360 ATA------AAC-ATGCTGTA-G--CTATGTGGAGAAA---AATGAGTATGTTGGGCTTATGTTTTC-TTTCCATGAACAATTCGTTTTGCCCTTGATCAAGGAGAAGTGTGGG----GTATGCCTTGCTCACCCAA----AAG-G-TTCCAGTAGCAACAACAGAAGCC---------------------------TTCATTATCGATATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTACTCATTTGA---------C---ATCTT-TGTT-TTAT--TTGC---ATTTGCAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAAGATAAA---CCCGCTGATGG
droMoj3 scaffold_6500:20127698-20127969 + ATG------AATCACGCT----T--GTTGGGAGAAC------ATGCGTATGTTGGCTTCATATTTTG-TGTCCATCAACAATACG-TTTGTCCTTGATCAAGGAGAAGTGTGGG----GTATAAAATGGGTGCCCCA----AAG-G-TTTCAGCTGAAGCAGCAGCCGCCGATGGAAGAGCAATAGCAGTCCTTTGTTTTGTTATCGATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTACTCACTTGA---------C---ATTTGAT--TCCTTC--CTTC---CTTTTCAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAAGATAAA---CCCGCTGATGG
droGri2 scaffold_15252:5495680-5495928 + GTG-TGTAG----------GTGG--CTAAGTGGAGGAGTGTAATTTGTATGTTGGTTTTATGTTTTGGTTTCCATGAACAATTCGCTTTGCCCTTGATCAAGGAGATGTGTGGGGTGGGTTTGAATTGGGCGCCCAG----TCGCA------------------G---CC---------------------------TTTGTTATCGATATATTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAACTAATGTCCCCCATC---TCTCC-----AC-T-CTTT--TTACACTCCTTGCAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAAGATAAA---CCCGCTGATGG
droWil2 scf2_1100000004585:1532054-1532257 + dwi_1628 ACG------AAA-GAGTGGGT-G--GTGGGTGGAGG------AGGAGTAGGAGGGGAGCATTT------------------TATGCTTTGCCCTTGATCAAGGAGAAGTTTGGG----GTATGGGTAGAATGAGT----------------------------------------------------------TTGAT---ATATTGATACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTATGCTAATATCTTTCGTT----------TGCT--TTACTT--TTCC---CTTTACAGGCTAAATCCCCCGAATCAAAGAAAGCCAAGAAGGCAGC------CGATGGCGG
dp5 4_group4:2094113-2094286 + TGTGTGAAG--------------------------G------GGGAATTAGATG-GAGC---T------------------TTTGCTTTGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCACAG----GACCA------------------G---AA------------------T----CCGATTCAGAATCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCTCATTTCT----------C--------T--CTATT----------TTTTCCAGGCCAAATCCGCCGAATCAAAGAAGGCCAAGAAGGC---------CGCCGACGG
droPer2 scaffold_10:1101351-1101523 + TGTGTGAAG--------------------------G------GGGAATTAGATG-GAGC---T------------------TTTGCTTTGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCACAG----GACCA------------------G---AA------------------T----CCGATTCGGAATCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCTCATTTCT----------C--------T--CTAT-----------TTTTCCAGGCCAAATCCGCCGAATCAAAGAAGGCCAAGAAGGC---------CGCCGACGG
droAna3 scaffold_10220:1432-1610 + AAA------AGT-----------------------G------GGGAGTG------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCATGG----GACCTA-------------------------------------------------ATTCGTTATCGCA---GAAAAT---------------------------------------------------------------------------------------------TCAACCAAG--------------------------------------------------------------------------------CCCTTTGCTCAATTTC----------C-TTAT---TT--ATCTA--TTTT---CTGCTTAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAGGC---------TGCTGATGG
droBip1 scf7180000396574:360142-360315 + AAA------AAT-----------------------G------GGGAATG------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCATGG----GACCCT-------------------------------------------------ATTCGTTATCGCT---GAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----ACCAA---ACCTTTGCTCATTTTC----------C--------TT--ATGTA--TTCT---CTCTTTAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAGGC---------TGCTGATGG
droKik1 scf7180000302271:218583-218791 + GGGACTTGG--A---------GGGACTGACT-----------GGGAGTG-----------------------------CGATTGGGGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCACACACAGGGC-G-GGCTGTTATCACCAACACGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTTACTAACTTTT-CCGTTTGCC---ATTTTCT--CTATTC--CCTC---TTTTCCAGGCCAAATCCGCAGAATCAAAGAAAGCCAAGAAGGCCGCC---GCCGCCGATGG
droFic1 scf7180000453924:684336-684407 + TCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGC-------------------------------T--TTGC---TTTTTCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGG
droEle1 scf7180000491273:422358-422425 - TTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--TATA---ATTTGTAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGG
droRho1 scf7180000766156:68988-69048 - TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTTAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCT---GCCGCCGATGG
droBia1 scf7180000302188:1758507-1758809 + AGA--------------------------------G------GGGTACT------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCGAAA----C---C-TTCC-----------------------------------------------------------------------------CTCGTTTCTGGCCATTTCCCTGC---------TTTTCCTGGTCTAGATGCGTAGGTATTTACATATTTTGTGTGTATTTGGGGGCAACTAAGACCTGGGTTCAACACCCACAGCTGTTTA----------------ATGAATTTGCCTCTAATAAAATATGGTTCTCAAGACATTTTCACTAATTCCC---------C---------TT-CG---ATTTCCTGCTTTTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCCGCCGCCGCCGATGG
droTak1 scf7180000415705:503964-504047 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATTTTG---------T---ATC---TT--ATTTC--TCAC---CTTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGG
droEug1 scf7180000409554:3355555-3355641 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTAATAATTTAA---------C---------TT-GC---ATTTTTTGC-TTTTTCAGGCAAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGG
dm3 chr2L:2755977-2756057 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACTAACTTCT----------C--------T------TT--TTTC---GCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCG---GCCGCCGATGG
droSim2 2l:2643547-2643631 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACTAACTTCT----------C--------TC--TCCTA--TTTC---GCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCG---GCCGCCGATGG
droSec2 scaffold_5:922057-922141 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCTAACTTCT----------C--------TC--TCCTC--TTTC---GCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCG---GCCGCCGATGG
droYak3 2L:2751323-2751564 + CAAGTTAAG--A-----------------------G------GGGTATT------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCTTAG----GACCAT-T-------------------------------------------------------TCGCT---G-------------------------------------CTCTTCTAGTTATTCTAGCTCTAGAGGCCT--------------------------------------------------------AAGCT-TGCTAATAGCAAAATCAATCAT-------------CATTTGAATAA----ACCAAAATAACTCTACTAATTTTC---------TC--------C--CT---AATTTGCAC-TCTTTCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCAGCG---GCCGCCGATGG
droEre2 scaffold_4929:2808552-2808798 + ---------------------------------------------------------------------------------------------TTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCGTAG----GTCCAT-T-------------------------------------------------------TCGAT---GAACTCCTGATTTCCCCTGAT-----------------TTCTTCTAGTTCTTCTAGCTCTAGAGCACT--------------------------------------------------------AATAG-TGCTTAAAGTAGAGTAAACCAAAAGAACT--CTACTAGTAGAGTAA----ACCAAAAGAACTCTACTAACTTTC---------TC--------T--CT---ATTTTGCAC-TCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCTAAGAAGGCAGCG---GCCGCCGATGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATA------AAC-ATGCTGTA-G--CTATGTGGAGAAA---AATGAGTATGTTGGGCTTATGTTTTC-TTTCCATGAACAATTCGTTTTGCCCTTGATCAAGGAGAAGTGTGGG----GTATGCCTTGCTCACCCAA----AAG-G-TTCCAGTAGCAACAACAGAAGCC---------------------------TTCATTATCGATATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTACTCATTTGA---------C---ATCTT-TGTT-TTAT--TTGC---ATTTGCAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAAGATAAA---CCCGCTGATGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................A-G--CTATGTGGAGAAA---AAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000002000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGAAAGATAAA---CCCGCT.....2112.002001000000000000000000100000000000000000000000000000000000000000
............................TGTGGAGAAA---AATGAGTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................TCAAGGAGAAGTGTGGG----GTA.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCATTTGA---------C---ATCTT-TGT............................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAAGCCAAGAAAG...................1811.001000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAAGCCAAGAAAGATAAA---CC.........2711.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGCCGAATCAAAGAAAGCCAAG.......................2611.001000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAAGCCAAGAAAGAT.................2211.001000000000000000001000000000000000000000000000000000000000000000
..............................................GTATGTTGGGCTTATGTTTTC-TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGATAAA---CCCGCT.....1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAAGCCAAGAAA....................1911.001000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCCGAATCAAAGAAAGCCAAG.......................2511.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGCCGAATCAAAGAAAGC...........................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAGATAAA---CCCGCTGAT..2211.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
ATG------AATCACGCT----T--GTTGGGAGAAC------ATGCGTATGTTGGCTTCATATTTTG-TGTCCATCAACAATACG-TTTGTCCTTGATCAAGGAGAAGTGTGGG----GTATAAAATGGGTGCCCCA----AAG-G-TTTCAGCTGAAGCAGCAGCCGCCGATGGAAGAGCAATAGCAGTCCTTTGTTTTGTTATCGATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTACTCACTTGA---------C---ATTTGAT--TCCTTC--CTTC---CTTTTCAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAAGATAAA---CCCGCTGATGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAATCAAAGAAAGCCAAGAAAG...................2511.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCCGCCGAATCAAAGAAAGCCAAG.......................2811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAAGCCAAGAAAG...................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAGCCAAGAAAGAT.................1911.001000010
........................................................................................................................................A----AAG-G-TTTCAGCTGAAGCAGCAGCC...........................................................................................................................................................................................................................................................................................................................................................2511.001000010
...............................................................................................................................................................CAGCAGCCGCCGATGGAAGAGC.............................................................................................................................................................................................................................................................................................................................................2211.001000010
................................................................................ATACG-TTTGTCCTTGATCAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
................................................ATGTTGGCTTCATATTTTG-TGTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCAAGAAAGATAAA---CC.........2111.001100000
..........ATCACGCT----T--GTTGGGAGAAC------ATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
GTG-TGTAG----------GTGG--CTAAGTGGAGGAGTGTAATTTGTATGTTGGTTTTATGTTTTGGTTTCCATGAACAATTCGCTTTGCCCTTGATCAAGGAGATGTGTGGGGTGGGTTTGAATTGGGCGCCCAG----TCGCA------------------G---CC---------------------------TTTGTTATCGATATATTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAACTAATGTCCCCCATC---TCTCC-----AC-T-CTTT--TTACACTCCTTGCAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAAGATAAA---CCCGCTGATGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAAGCCAAGAAAGATAAA---CC.........2711.00101
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAAGCCAAGAAAGAT.................2011.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCCGAATCAAAGAA..............................1811.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGCCAAGAAAGATAAA---CC.........2311.00110
droWil2
ACG------AAA-GAGTGGGT-G--GTGGGTGGAGG------AGGAGTAGGAGGGGAGCATTT------------------TATGCTTTGCCCTTGATCAAGGAGAAGTTTGGG----GTATGGGTAGAATGAGT----------------------------------------------------------TTGAT---ATATTGATACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTATGCTAATATCTTTCGTT----------TGCT--TTACTT--TTCC---CTTTACAGGCTAAATCCCCCGAATCAAAGAAAGCCAAGAAGGCAGC------CGATGGCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................GTGGAGG------AGGAGTAGGAGGGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTAATATCTTTCGTT----------TGCT--T...........................................................................2411.00100010
...........................................................................................................GTTTGGG----GTATGGGTAGAAT...............................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAAGCCAAGAAGG...................1811.00100010
............................................................................................................................GTAGAATGAGT----------------------------------------------------------TTGAT---ATATTGC..................................................................................................................................................................................................................................................................................................................2311.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCAAAGAAAGCCAAGAAGGCAGC------.........2711.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAATCAAAGAAAGCCAAGAAGGC..................2611.00100100
..................GGT-G--GTGGGTGGAGG------AGGAGTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
............................................................................................................................GTAGAATGAGT----------------------------------------------------------TTGAT---ATATTGATACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..................................................................................................................2711.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCAGC------CGATGGC..1811.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCAAGAAGGCAGC------CGATGGC..2411.00101000
...........................................................................................................GTTTGGG----GTATGGGTAGAATGA.............................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...............GTGGGT-G--GTGGGTGGAGG------AGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTATGCTAATATCTTTCGTT----------TGCT--............................................................................2711.00110000
...................GT-G--GTGGGTGGAGG------AGGAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.CG------AAA-GAGTGGGT-G--GTGGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAAGAAGGCAGC------CGATG....2111.00100100
..................GGT-G--GTGGGTGGAGG------AGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGAAGGCAGC------CGATGGC..2211.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAAGCCAAGAAGGC..................1911.00101000
...............GTGGGT-G--GTGGGTGGAGG------AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100001
...............GTGGGT-G--GTGGGTGGAGG------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25100010
...............GTGGGT-G--GTGGGTGGAGG------AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100001
dp5
TGTGTGAAG--------------------------G------GGGAATTAGATG-GAGC---T------------------TTTGCTTTGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCACAG----GACCA------------------G---AA------------------T----CCGATTCAGAATCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCTCATTTCT----------C--------T--CTATT----------TTTTCCAGGCCAAATCCGCCGAATCAAAGAAGGCCAAGAAGGC---------CGCCGACGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCAAAGAAGGCCAAGAA.....................2111.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAATCAAAGAAGGCCAAGAAGGC---------.........2711.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCAAAGAAGGCCAAGAAGGC---------.........2411.0010100000000
....................................................................................................................................CACAG----GACCA------------------G---AA------------------T----CCGATTC..........................................................................................................................................................................................................................................................................................................................2111.0010001000000
........................................................................................................................TTGAGTTGGGCGCACAG----GACCA------------------G---..........................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
droPer2
TGTGTGAAG--------------------------G------GGGAATTAGATG-GAGC---T------------------TTTGCTTTGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCACAG----GACCA------------------G---AA------------------T----CCGATTCGGAATCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGCTCATTTCT----------C--------T--CTAT-----------TTTTCCAGGCCAAATCCGCCGAATCAAAGAAGGCCAAGAAGGC---------CGCCGACGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................ATTAGATG-GAGC---T------------------TTTGCTTTGCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCCAAGAAG....................1911.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAGAAGGCCAAGAAGGC---------.........2311.001001000
droAna3
AAA------AGT-----------------------G------GGGAGTG------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCATGG----GACCTA-------------------------------------------------ATTCGTTATCGCA---GAAAAT---------------------------------------------------------------------------------------------TCAACCAAG--------------------------------------------------------------------------------CCCTTTGCTCAATTTC----------C-TTAT---TT--ATCTA--TTTT---CTGCTTAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAGGC---------TGCTGATGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATCCGCCGAATCAAAGAAAGC...........................2620.501010000
................................................................................................................G-----GTTTGAGTTGGGCGCATGG----GA...................................................................................................................................................................................................................................................................................................................................................................................2220.501000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--ATCTA--TTTT---CTGCTTAG.....................................................1920.501000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCAAGAAGGC---------TGCTGAT..2120.501010000
..............................................GTG------------------------------------GGATGCCCTTGATCAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCAAAGAAAGCCAAGAA.....................2120.501000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATCCGCCGAATCAAA.................................2020.501100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGCCGAATCAAAGAAAGCC..........................2420.501010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATCCGCCGAATCAAAGAAAG............................2520.501010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGAAGGC---------TGCTGATG.2020.501100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCCGAATCAAAGAAAGCC..........................2220.501010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAGAAAGCCAAGAAGGC---------.........2220.501010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGCCGAATCAAAGAAAGC...........................2320.501010000
droBip1
AAA------AAT-----------------------G------GGGAATG------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCATGG----GACCCT-------------------------------------------------ATTCGTTATCGCT---GAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA----ACCAA---ACCTTTGCTCATTTTC----------C--------TT--ATGTA--TTCT---CTCTTTAGGCTAAATCCGCCGAATCAAAGAAAGCCAAGAAGGC---------TGCTGATGGSizeHit CountTotal NormTotal
No Reads
droKik1
GGGACTTGG--A---------GGGACTGACT-----------GGGAGTG-----------------------------CGATTGGGGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCACACACAGGGC-G-GGCTGTTATCACCAACACGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTTACTAACTTTT-CCGTTTGCC---ATTTTCT--CTATTC--CCTC---TTTTCCAGGCCAAATCCGCAGAATCAAAGAAAGCCAAGAAGGCCGCC---GCCGCCGATGGSizeHit CountTotal NormTotal
No Reads
droFic1
TCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGC-------------------------------T--TTGC---TTTTTCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGGSizeHit CountTotal NormTotal
No Reads
droEle1
TTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT--TATA---ATTTGTAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGGSizeHit CountTotal NormTotal
No Reads
droRho1
TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTTAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCT---GCCGCCGATGGSizeHit CountTotal NormTotal
No Reads
droBia1
AGA--------------------------------G------GGGTACT------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCGAAA----C---C-TTCC-----------------------------------------------------------------------------CTCGTTTCTGGCCATTTCCCTGC---------TTTTCCTGGTCTAGATGCGTAGGTATTTACATATTTTGTGTGTATTTGGGGGCAACTAAGACCTGGGTTCAACACCCACAGCTGTTTA----------------ATGAATTTGCCTCTAATAAAATATGGTTCTCAAGACATTTTCACTAATTCCC---------C---------TT-CG---ATTTCCTGCTTTTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCCGCCGCCGCCGATGGSizeHit CountTotal NormTotal
No Reads
droTak1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATTTTG---------T---ATC---TT--ATTTC--TCAC---CTTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGGSizeHit CountTotal NormTotal
No Reads
droEug1
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTAATAATTTAA---------C---------TT-GC---ATTTTTTGC-TTTTTCAGGCAAAATCCGCAGAATCAAAGAAGGCCAAGAAAGCCGCC---GCCGCCGATGGSizeHit CountTotal NormTotal
No Reads
dm3
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACTAACTTCT----------C--------T------TT--TTTC---GCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCG---GCCGCCGATGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGAAGGCCAAGAAGGCCGCG---GC.........2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000010000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGAATCAAAGAAGGCC..........................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCCAAGAAGGCCGCG---GC.........2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000001010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCAAAGAAGGC...........................1814.0040000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCAAAGAAGGCC..........................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000020000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCAAAGAAGGCC..........................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGCAGAATCAAAGAAGGC...........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCAAGAAGGCCGCG---GCCGCCGAT..2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAGGCCGCG---GCCGCCGATGG2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGCAGAATCAAAGAAGGCC..........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCAAGAAGGCCGCG---GCCGC......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCGCAGAATCAAAGAAGGC...........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCCAAGAAGGCCGCG---GCC........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCGCAGAATCAAAGAAGGCC..........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAATCCGCAGAATCAAAGAAGGC...........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGAAGGCCGCG---GCCGCC.....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTCT----------C--------T------TT--TTTC---GCTTCCAG.....................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGAAGGCCGCG---GCCGCC.....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCGCG---GCCGCCGATGG2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCGCG---GCCGCCGATGG2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCAAGAAGGCCGCG---GCCGCCG....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAGAAGGCCAAGAAG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAGAAGGCCAAGAA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAGAAGGCCAAGAAGG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAGAATCAAAGAAGGCCAAGAA.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGAAGGCCAAGAAGGCCGCG---GCC........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATCCGCAGAATCAA..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCAAGAAGGCCGCG---GCCG.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGAAGGCCGCG---GCCGC......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGAATCAAAGAAGGCCAA........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCAAGAAGGCCGCG---GCC........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCGCG---GCCGCCGATG.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAAGAAGGCCGCG---G..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCCAAGAAGGCCGCG---GCCGC......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAGAATCAAAGAAGGCCAAG.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CT----------C--------T------TT--TTTC---GCTTCCAG.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGAAGGCCGCG---GCCGCCG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGAATCAAAGAAGGCCAAGAA.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCAAGAAGGCCGCG---GCCGCCGAT..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCCAAGAAGGCCGCG---GC.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCAAGAAGGCCGCG---GC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCCAAGAAGGCCGCG---...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCCAAGAAGGCCGC...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGAATCAAAGAAGGC...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGAATCAAAGAAGG............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGCCAAATCCGCAGAATCAAA.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCCGCG---GCCGCCG....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCAAGAAGGCCGCG---GCCGCCGAT..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCCAAGAAGGCCGCG---GCCGCC.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCGCAGAATCAAAGAAG.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCAAAGAAGGCCAAGAA.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCGCAGAATCAAAG................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCAAAGAAGGCCAAGAAGG...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGCAGAATCAAAGAAG.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGCAGAATCAAAGAAGGC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAGAATCAAAGAAGGC...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCAAAGAAGGCCAAGA......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCT----------C--------T------TT--TTTC---GCTTCCAG.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCAAGAAGGCCGCG---GC.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGAAGGCCAAGAAGGC..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCAAAGAAGGCCAAGA......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCAAAGAAGGCCAAG.......................1911.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGAATCAAAGAAGGCCAAGAAG....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAAGAAGGCCGCG---GCCGCCGATGG2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCCAAGA......................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCCAAGAAG....................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCCAAGAAGG...................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTACTAACTTCT----------C--------TC--TCCTA--TTTC---GCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCG---GCCGCCGATGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCAAAGAAGGC...........................1812.00201010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGAAGGCCAAGAAGGCCGCG---GC.........2611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAGAAGGCCAAGAAGGCCGCG---GC.........2911.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCT----------C--------TC--TCCTA--TTTC---GCTTCCAT.....................................................2311.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCCAAATCCGCAGAATCAAAGAA..............................2811.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGCAGAATCAAAGAAG.............................2011.00100000000000100000
droSec2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCTAACTTCT----------C--------TC--TCCTC--TTTC---GCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGCG---GCCGCCGATGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGAATCAAAGAAGGCCAAGAA.....................2511.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAGGCCGCG---GCCGCCGATG.2311.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCT----------C--------TC--TCCTC--TTTC---GCTTCCAG.....................................................2711.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAGGCCGCG---GCCGCCGATGG2411.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCCGCG---GCCGCCGATGG2211.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAAGAAGGCCGCG---GCCGCCG....2411.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCAAAGAAGGCCAAGAAG....................2511.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAGAATCAAAGAAGGCCAA........................2411.0010100
droYak3
CAAGTTAAG--A-----------------------G------GGGTATT------------------------------------GGATGCCCTTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCTTAG----GACCAT-T-------------------------------------------------------TCGCT---G-------------------------------------CTCTTCTAGTTATTCTAGCTCTAGAGGCCT--------------------------------------------------------AAGCT-TGCTAATAGCAAAATCAATCAT-------------CATTTGAATAA----ACCAAAATAACTCTACTAATTTTC---------TC--------C--CT---AATTTGCAC-TCTTTCAGGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCAGCG---GCCGCCGATGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAGGCCAAGAAGGCAGCG---GC.........2515.00501300010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCCAAGAAGGCAGC...............2412.00201100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCAAGAAGGCAGCG---GC.........2112.00201000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAAGAAGGCAGCG---GCCGCC.....2312.00200200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCCAAGAAGGC..................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCAAGAAGGCAGCG---GC.........2011.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCAAAGAAGGCCAAGAAGG...................2511.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCCAAGAAGGCAGCG---GC.........2411.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCCAAGAAGGCAGCG---GCCGCC.....2511.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCCAAGAAGGCAGCG---GC.........2711.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCCAAGAAGGCAGC...............1911.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGAAGGCCAAGAAGGCAGCG---GC.........2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGAATCAAAGAAGGCCAAG.......................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAGGCAGCG---GCCGCCGATG.2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAGAAGGCCAAGAAGGCAGC...............2511.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCCAAGAAGGCAGCG---GCC........2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAGAATCAAAGAAGGCCA.........................2311.00100000010000
droEre2
---------------------------------------------------------------------------------------------TTGATCAAGGAGATGTGTGG-----GTTTGAGTTGGGCGCGTAG----GTCCAT-T-------------------------------------------------------TCGAT---GAACTCCTGATTTCCCCTGAT-----------------TTCTTCTAGTTCTTCTAGCTCTAGAGCACT--------------------------------------------------------AATAG-TGCTTAAAGTAGAGTAAACCAAAAGAACT--CTACTAGTAGAGTAA----ACCAAAAGAACTCTACTAACTTTC---------TC--------T--CT---ATTTTGCAC-TCTTCCAGGCCAAATCCGCAGAATCAAAGAAGGCTAAGAAGGCAGCG---GCCGCCGATGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCTAAGAAGGCAGCG---GCC........25118.001800000018
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCTAAGAAGGCAGC...............2413.0031000200
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTAAGAAGGCAGCG---GC.........2212.0020101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCTAAGAAGGCAGCG---GC.........2712.0020000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCTAAGAAGGCAGCG---GC.........2412.0021000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAGGCTAAGAAGGCA.................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAGAAGGCTAAGA......................1911.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGAAGGCTAAGAAGGC..................2011.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAGGCTAAGAAGGC..................1911.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGAAGGCTAAGAAG....................1911.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTAAGAAGGCAGCG---GCC........2211.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTAAGAAGGCAGCG---...........1911.0010000100
........................................................................................................GATGTGTGG-----GTTTGAGTTGGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAATCAAAGAAGGCTAAGAAGGCA.................2811.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGAATCAAAGAAGGCTAAGAA.....................2511.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGCTAAGAAGGCAGC...............2111.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAGAAGGCTAAGAAG....................2011.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAGAAGGCTAAGAAGGCAGCG---GC.........2811.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAGAAGGCTAAGAAGGCAGC...............2511.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTAAGAAGGCAGCG---GC.........1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCAAAGAAGGCT..........................1811.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGGCTAAGAAGGCAGCG---GC.........2311.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGAAGGCAGCG---GCCGCCGAT..2311.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAGGCTAAGAAGGCAGCG---GC.........2511.0010001000
.......................................................................................................................................................................................................................................................................TCTAGCTCTAGAGCACT--------------------------------------------------------AATA..............................................................................................................................................................................2111.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGAAGGCAGCG---GCCGCC.....2111.0010100000

Generated: 05/17/2015 at 03:29 AM