dvi_1125

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AATTCTTCATATTTGGGATACTTATATCTTTCATTTGTGCATCGAAGCAGGTGAGTTATAGATTATATAGCTTGGCAACATGTTTCTGTAATTTCTTTTTCACTGACTGCGCATACTATGATCTCAGCGTAATCACAGCTTTGGTCAATCGAAATGTTTTATGATAATTTTAAGTAATACCAACTTCGGGAACCCACGAGCATCAACGGCTATTACATATGTAAAGTCAAGCAATTTGCTTGTGTTTGACC ************************************************(((((....((((((((.(((.((....)).)))..))))))))....)))))(((.(((((..............))))).)))..(((((((....(((((..((.((((...........)))).))....)))))....))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060678 9x140_testes_total	SRR060683 160_testes_total	SRR060674 9x140_ovaries_total	SRR060675 140x9_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060681 Argx9_testes_total	GSM1528803 follicle cells	V053 head
............TTGGGATACTTATATCTTTCATTTGTGC...................................................................................................................................................................................................................	28	0	1	2.00	2	0	0	0	1	0	0	1	0	0
..............................TCATTTGTGCATCGAAGCAGGATTG....................................................................................................................................................................................................	25	3	1	2.00	2	0	0	2	0	0	0	0	0	0
...............................CATTTGTGCATCGAAGCAGGATT.....................................................................................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0	0
............TTGGGATACTTATATCTTTCA..........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0
..............................TCATTTGTGCATCGAAGCAGG........................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..................TACTTATATCTTTCATTTGCGCATCGAA.............................................................................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0	0	0	0	0
............TTGGGATACTTATATCTTTCATTTGTG....................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0
............TTGGGTTACTTATATCTTTCATTTGTG....................................................................................................................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................TCTTTCATTTGTGCATCGAAGCAGGA.......................................................................................................................................................................................................	26	1	1	1.00	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................GGAGCCCCCGAGCACCAACG...........................................	20	3	3	0.33	1	1	0	0	0	0	0	0	0	0
...................................TGTGCATCGAAGCAGGATTGT...................................................................................................................................................................................................	21	3	3	0.33	1	0	1	0	0	0	0	0	0	0
...................................TGTGCATCGAAGCAGGAT......................................................................................................................................................................................................	18	2	4	0.25	1	0	0	0	0	0	0	0	1	0
.....................................................................................................AGAGACTGCGCATACGATG...................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	0	0	1

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATTCTTCATATTTGGGATACTTATATCTTTCATTTGTGCATCGAAGCAGGTGAGTTATAGATTATATAGCTTGGCAACATGTTTCTGTAATTTCTTTTTCACTGACTGCGCATACTATGATCTCAGCGTAATCACAGCTTTGGTCAATCGAAATGTTTTATGATAATTTTAAGTAATACCAACTTCGGGAACCCACGAGCATCAACGGCTATTACATATGTAAAGTCAAGCAATTTGCTTGTGTTTGACC
**************************************************(((((....((((((((.(((.((....)).)))..))))))))....)))))(((.(((((..............))))).)))..(((((((....(((((..((.((((...........)))).))....)))))....))).))))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M047
female body

SRR060678
9x140_testes_total

SRR060683
160_testes_total

SRR060674
9x140_ovaries_total

SRR060675
140x9_ovaries_total

SRR060676
9xArg_ovaries_total

SRR060681
Argx9_testes_total

GSM1528803
follicle cells

V053
head

............TTGGGATACTTATATCTTTCATTTGTGC...................................................................................................................................................................................................................

2.00

..............................TCATTTGTGCATCGAAGCAGGATTG....................................................................................................................................................................................................

2.00

...............................CATTTGTGCATCGAAGCAGGATT.....................................................................................................................................................................................................

1.00

............TTGGGATACTTATATCTTTCA..........................................................................................................................................................................................................................

1.00

..............................TCATTTGTGCATCGAAGCAGG........................................................................................................................................................................................................

1.00

..................TACTTATATCTTTCATTTGCGCATCGAA.............................................................................................................................................................................................................

1.00

............TTGGGATACTTATATCTTTCATTTGTG....................................................................................................................................................................................................................

1.00

............TTGGGTTACTTATATCTTTCATTTGTG....................................................................................................................................................................................................................

1.00

..........................TCTTTCATTTGTGCATCGAAGCAGGA.......................................................................................................................................................................................................

1.00

............................................................................................................................................................................................GGAGCCCCCGAGCACCAACG...........................................

0.33

...................................TGTGCATCGAAGCAGGATTGT...................................................................................................................................................................................................

0.33

...................................TGTGCATCGAAGCAGGAT......................................................................................................................................................................................................

0.25

.....................................................................................................AGAGACTGCGCATACGATG...................................................................................................................................

0.06

TTAAGAAGTATAAACCCTATGAATATAGAAAGTAAACACGTAGCTTCGTCCACTCAATATCTAATATATCGAACCGTTGTACAAAGACATTAAAGAAAAAGTGACTGACGCGTATGATACTAGAGTCGCATTAGTGTCGAAACCAGTTAGCTTTACAAAATACTATTAAAATTCATTATGGTTGAAGCCCTTGGGTGCTCGTAGTTGCCGATAATGTATACATTTCAGTTCGTTAAACGAACACAAACTGG ************************************************(((((....((((((((.(((.((....)).)))..))))))))....)))))(((.(((((..............))))).)))..(((((((....(((((..((.((((...........)))).))....)))))....))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060684 140x9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	SRR060661 160x9_0-2h_embryos_total	SRR060657 140_testes_total	SRR060686 Argx9_0-2h_embryos_total	SRR1106713 embryo_0-2h	SRR1106719 embryo_8-10h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	V116 male body
...............................................................................................................................................................................TTGTGGTTGAAGCCTTTGGTTG......................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GGTGCCCTTGGGTGC.....................................................	15	2	20	0.30	6	0	0	0	0	0	1	1	1	1	1	1	0
.............................................................................................................................................................................................CTTGGGTCTTCGTAGTTG............................................	18	2	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CTTGGGTGGTCGTAGTAG............................................	18	2	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................GTACAAGGACATCGAAGAAA.........................................................................................................................................................	20	3	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................TCGAACCGTTGTATGAAG.....................................................................................................................................................................	18	2	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGGGTGCTCGTAGTTTCAG.........................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................TGTGGTTGAAGCCTTTGGT........................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................AAGTGACTGACGCACATAA......................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0

TTAAGAAGTATAAACCCTATGAATATAGAAAGTAAACACGTAGCTTCGTCCACTCAATATCTAATATATCGAACCGTTGTACAAAGACATTAAAGAAAAAGTGACTGACGCGTATGATACTAGAGTCGCATTAGTGTCGAAACCAGTTAGCTTTACAAAATACTATTAAAATTCATTATGGTTGAAGCCCTTGGGTGCTCGTAGTTGCCGATAATGTATACATTTCAGTTCGTTAAACGAACACAAACTGG
**************************************************(((((....((((((((.(((.((....)).)))..))))))))....)))))(((.(((((..............))))).)))..(((((((....(((((..((.((((...........)))).))....)))))....))).))))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

SRR060684
140x9_0-2h_embryos_total

SRR060687
9_0-2h_embryos_total

SRR060661
160x9_0-2h_embryos_total

SRR060657
140_testes_total

SRR060686
Argx9_0-2h_embryos_total

SRR1106713
embryo_0-2h

SRR1106719
embryo_8-10h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

V116
male body

...............................................................................................................................................................................TTGTGGTTGAAGCCTTTGGTTG......................................................

0.50

.......................................................................................................................................................................................GGTGCCCTTGGGTGC.....................................................

0.30

.............................................................................................................................................................................................CTTGGGTCTTCGTAGTTG............................................

0.11

.............................................................................................................................................................................................CTTGGGTGGTCGTAGTAG............................................

0.11

..............................................................................GTACAAGGACATCGAAGAAA.........................................................................................................................................................

0.09

....................................................................TCGAACCGTTGTATGAAG.....................................................................................................................................................................

0.07

...............................................................................................................................................................................................AGGGTGCTCGTAGTTTCAG.........................................

0.05

................................................................................................................................................................................TGTGGTTGAAGCCTTTGGT........................................................

0.05

..................................................................................................AAGTGACTGACGCACATAA......................................................................................................................................

0.05

Species	Coordinate	ID	Alignment
droVir3	scaffold_12723:272974-273224 -	dvi_1125	AATTCTTCATATTTGGGATACTTATATCTTTCATTTGTGCATCGAAGCAGGTGAGTTATAGATTATATAGCTTGGCAACATGTTTCTGTAATTTCTTTTTCACTGACTGCGCATACTATGATCTCAGCGTAATCACAGCTTTGGTCAATCGAAATGTTTTATGATAATTTTAAGTAATACCAACTTCGGGAACCCACGAGCATCAACGGCTATTACATATGTAAAGTCAAGCAATTTGCTTGTGTTTGACC
droGri2	scaffold_15126:1574581-1574649 -		AATTCTTCATATTTGGCATAATTGTCTCCTTATTTGGAGCATCAAAGCAGGTGAGCTTTAATATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Species

Coordinate

Alignment

droVir3

scaffold_12723:272974-273224 -

dvi_1125

AATTCTTCATATTTGGGATACTTATATCTTTCATTTGTGCATCGAAGCAGGTGAGTTATAGATTATATAGCTTGGCAACATGTTTCTGTAATTTCTTTTTCACTGACTGCGCATACTATGATCTCAGCGTAATCACAGCTTTGGTCAATCGAAATGTTTTATGATAATTTTAAGTAATACCAACTTCGGGAACCCACGAGCATCAACGGCTATTACATATGTAAAGTCAAGCAATTTGCTTGTGTTTGACC

droGri2

scaffold_15126:1574581-1574649 -

AATTCTTCATATTTGGCATAATTGTCTCCTTATTTGGAGCATCAAAGCAGGTGAGCTTTAATATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AATTCTTCATATTTGGGATACTTATATCTTTCATTTGTGCATCGAAGCAGGTGAGTTATAGATTATATAGCTTGGCAACATGTTTCTGTAATTTCTTTTTCACTGACTGCGCATACTATGATCTCAGCGTAATCACAGCTTTGGTCAATCGAAATGTTTTATGATAATTTTAAGTAATACCAACTTCGGGAACCCACGAGCATCAACGGCTATTACATATGTAAAGTCAAGCAATTTGCTTGTGTTTGACC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............TTGGGATACTTATATCTTTCATTTGTGC...................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CATTTGTGCATCGAAGCAGGATT.....................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTGGGATACTTATATCTTTCA..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TCATTTGTGCATCGAAGCAGG........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TTGGGATACTTATATCTTTCATTTGTG....................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCTTTCATTTGTGCATCGAAGCAGGA.......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TGTGCATCGAAGCAGGAT......................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droGri2

AATTCTTCATATTTGGCATAATTGTCTCCTTATTTGGAGCATCAAAGCAGGTGAGCTTTAATATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dvi_1125

scaffold_12723:273024-273174 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads