ID:

dvi_11236

 Coordinate:

scaffold_12963:10204433-10204486 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.7 -10.4 -10.2

Flybase annnotation

CDS [Dvir\GJ23973-cds]; CDS [Dvir\GJ23973-cds]; exon [dvir_GLEANR_929:3]; exon [dvir_GLEANR_929:2]; intron [Dvir\GJ23973-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey-
mature
  1. scaffold_12855:1194743-1194765 +
  2. scaffold_12875:1454889-1454911 +
  3. scaffold_12875:10543378-10543400 +
  4. scaffold_12875:19749999-19750021 +
  5. scaffold_12928:1076863-1076885 +
  6. scaffold_12928:4885314-4885336 +
  7. scaffold_12928:5306770-5306792 +
  8. scaffold_12928:7512174-7512196 +
  9. scaffold_12970:6588545-6588567 +
  10. scaffold_13047:16432078-16432100 +
  11. scaffold_13047:18734977-18734999 +
  12. scaffold_13049:1469852-1469874 +
  13. scaffold_13049:5622618-5622640 +
  14. scaffold_13049:6992700-6992722 +
  15. scaffold_13049:8772815-8772837 +
  16. scaffold_13049:8896209-8896231 +
  17. scaffold_13049:16765743-16765765 +
  18. scaffold_13049:20464137-20464159 +
  19. scaffold_13049:23640536-23640558 +
  20. scaffold_13324:2687743-2687765 +
  21. scaffold_10322:236767-236789 -
  22. scaffold_12472:186793-186815 -
  23. scaffold_12723:4819226-4819248 -
  24. scaffold_12726:358576-358598 -
  25. scaffold_12726:1164670-1164692 -
  26. scaffold_12875:16450459-16450481 -
  27. scaffold_12928:6627285-6627307 -
  28. scaffold_12963:5387567-5387589 -
  29. scaffold_12963:8911568-8911590 -
  30. dvi_11236  scaffold_12963:10204434-10204456 -
  31. scaffold_12963:13664567-13664589 -
  32. scaffold_12963:14588169-14588191 -
  33. scaffold_12970:1692140-1692162 -
  34. scaffold_12970:5774919-5774941 -
  35. scaffold_13042:803645-803667 -
  36. scaffold_13047:5019370-5019392 -
  37. scaffold_13047:5753276-5753298 -
  38. scaffold_13049:1088002-1088024 -
  39. scaffold_13049:1175782-1175804 -
  40. scaffold_13049:15278831-15278853 -
star

Sense Strand Reads

##################################################------------------------------------------------------##################################################
AGCTTAGCGCCGCGCTCAAGGTGGAGGCCGCCGAATTGGCCGCTGCTGCTGCCGTCGCTGCCAGCGTCCAACTGCCGCAGCAGCAACAACAACAACAACAGCAGCAGCAACAGCTCTACAGCAGCTGGAGCGCCAGCATGCAGAGCATGCGTCC
**************************************************...((.(((((..(((.........))).))))).)).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 V116
male body		 SRR060670
9_testes_total
 SRR060659
Argentina_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060657
140_testes_total
 M047
female body
 M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
............................................GGTGCTGCCGTCGCTGCC............................................................................................ 18 1 8 0.38 3 1 1 0 0 1 0 0 0 0 0 0 0 0
............................................GGTGCTGCCGTCGCTGCCGGGGTC...................................................................................... 24 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GCTGCTGCTCCCGTCGCTGCC............................................................................................ 21 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................TGCTGCCGTCGCTGCCGGGGTC...................................................................................... 22 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GCCGTTGCTGCCAGCGTC...................................................................................... 18 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................GCCAACGTCCAACTGGCGCTG.......................................................................... 21 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................CTTCTACTGCCGTCGCTGC............................................................................................. 19 2 20 0.10 2 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................TACTGCAGCTGGAGCACCA................... 19 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................GCTGCTGCTCCCGTCGCTGTC............................................................................................ 21 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AACAACAACAACAACAGCAGC................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................CTGCTGCTCCCGTCGCTGTC............................................................................................ 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAACAACAACAACAACAGCAGCAGC.............................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................CAGCAACAACAACAACAACAGCA................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................ACAACAACAACAGCAGCAGCA............................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................ACAACAACAGCAGCAGCAACAGC........................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TCGAATCGCGGCGCGAGTTCCACCTCCGGCGGCTTAACCGGCGACGACGACGGCAGCGACGGTCGCAGGTTGACGGCGTCGTCGTTGTTGTTGTTGTTGTCGTCGTCGTTGTCGAGATGTCGTCGACCTCGCGGTCGTACGTCTCGTACGCAGG
**************************************************...((.(((((..(((.........))).))))).)).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060660
Argentina_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060680
 9xArg_testes_total
....................................ACCGGCGACGACAACGGCAGC................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................TCGTCGATGTCGAGTTGTGGTC.............................. 22 3 5 0.60 3 0 1 1 1 0 0
.......................................................................................................CGTCGATGTCGAGTTGTGGTC.............................. 21 3 10 0.20 2 0 1 0 0 1 0
.........................................................................................GTTGTTGTTGTCGTCGTC............................................... 18 0 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:10204383-10204536 - dvi_11236 AGCTT-------AGC----------GCCGC-----------------------------GCTCAA--------GGTGG--AGGCCG------------------------CCGAATTG----------------------------------------GCCGCTGCTGC------TGCCGTC-------GCTGC--------------------------C-AGCGT----------------CCAACT---------------G---------------------CCGCAGCAGCAACAACAAC------------AACAACAGCAGCAGCA---ACAGC---T-------------------------CTACAGCAGCT------GGAGC---GCC---A---GCA--------TGCAGA--GCATGCGT---------CC
droMoj3 scaffold_6473:14818868-14818997 - AGCTG-------AGG-----------TCA------------------------------------------------------------------------------------------------------G------GTGACAGAC--G--ACGTTGGCGACTGCGAC---------GGCAACT-----------------GC---------AACTG--------------------------------------------------------------------CCACAGCAGCAACAGCAAC------------AGCAACAGCAACAGCA---ACAGC---A---------------------------ACAGCAGCAGCAGCAGCAGC---AGCAGCA---G----------------CGG----CGT---------GC
droGri2 scaffold_14853:7861921-7862053 + GCGC-TCAAA-C----------------A-----------------------------------------------A-------------------------------------------------------------ACGGCATACTCA--AA---AAT------------------GGCAACCGC-A-------------GC------------AG--------C------------------------G------------------CCAGCTTCAACAACAACAACAGCAGCAGCAACAAC------------AACAGCAGCAGCAGCA---ACAAC---A---------------------------ACAGCAGCA------GCAGTC--GCCAG----------------------CAGCAG-ACC---------AT
droWil2 scf2_1100000004382:396644-396787 + ACATC-------AGC----------AGCAT-----------------------------GCCCATGT---------CC--AG-------------------G--------CCCAACAG-----------CAT--------------------------GCTGCCGCTGC------AGCTGCCGCC-----------------GC---------AGCCG--------C----------------TCATCA---------------G---------------------CAGCAGCAGCAACAACAAC------------AACAACAGCAGCAGCA---ACAGC---A---------------------------ACAACAACA------GCAGCATCTACAT----------------------GCG----CAA---------CA
dp5 2:23179030-23179160 - GCCC-TCAAG-G--------------TGATTCGA------------------TTTACAC-----------------------------------------------------------------------------------------------------------------------GACGCCCGCCGGCTTCCATCATC-A----------------------------------------CCAACA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AACAACAGCAGCAGCA---ACAACAGCAGGC--------------------TG------CTGCG------GCAGTGGCAGCAG----------------------CAG----CGG---------CC
droPer2 scaffold_3:5951428-5951558 - GCCC-TCAAG-G--------------TGATTCGA------------------TTTACAC-----------------------------------------------------------------------------------------------------------------------GACGCCCGCCGGCTTCCATCATC-A----------------------------------------CCAACA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AACAACAGCAGCAGCA---ACAACAGCAGGC--------------------TG------CTGCG------GCAGTGGCAGCAG----------------------CAG----CGG---------CC
droAna3 scaffold_13417:2325437-2325582 + CGCCA-------TGC-TGGCCGCTCG-------CAACGGTGCCGGCGGGCAGATTCC--------------------------------------------------------------------------------------------------------GCCTCC-----------------------------------GCCCCCGCCCGT---TGGC-AGTGC----------------CCAGCA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AACAGCAACAGCAGCAGCAACAAC---A---------------------------ATCGCATCA------GCAAC---CTC---A---T----------------CAT-----GG---------GA
droBip1 scf7180000396529:288740-288915 + CACCA-------GTTGGCG------------------G--CCCA-----------------------------CTAGC--AATCAG-------AAATCCAGG------------A------------------------------------------GTCGAACTCAGC---------TGC-------A-------------GCT------GCGTCCACTCCTGCATCCCTCAATAGTCTAAGCCAGCA---------------A---------------------CAGCAGCAGCAGCAACAAC------------AACAGCAGCAGCAGCA---ACACC---AG------------------------CAACAGCAGCA------GCAACACCAACAG----------------------CAG----CAG---CACACACC
droKik1 scf7180000302684:113149-113301 + CTCCA-------CACGGCG------------------C--CCGA-----------------------------TGTGA--ATCCCG-------CTGCCCAGG------------G------------------------------------------TGC-GTCGCAGC---------AGC-------A-------------GCA------TCA---CTTC-AGCGC----------------CCATCA---------------G---------------------CAGCAGCAACAGCAACAGC------------AGCAGCAGCAGCAGCA---ACATC---AT------------------------CTTCAGCAACA------GCAGC---AGC---A---G----------------CAT----T-GCAGCATG-TTC
droFic1 scf7180000453581:210349-210506 + GGATC-------AGC----------ATCTG-----------------------------GTTCGGGA---------TC--GG-------------------GATCGGGCTCCGGATCGGCCTCCAACTACTCACAGAAG-----------------------CTGC-------------------------------------------------------------------------------------A------------------CCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAAC------------AGCAGCAGCAGCAGCA---ACACC---AC------------------------CAGCAGCAGCA------GCAGCTGCTGCAG----------------------GAG----CTG---------CA
droEle1 scf7180000491194:690233-690376 + TC----------AGC----------ACCACACGA-AGA--TCGAGGATGCGGACTCC--------------------------------------------------------------------------------------------------------ACGACA-----------------------------------ACGGCAGCCC---------------------------------AGCAGCAGCAACATCAGCAG---------------------CAGCAACAGCAGCAGCAGC------------AACAGCAGCAGCAGCA---ACAGC---AG------------------------CAACAGCAGCA------GCAGCAACAACAT----------------------CAA----CAG---------CA
droRho1 scf7180000779488:731032-731174 + ACTT-CC-----AGC----------ACCACACGA-AGA--TCGAGCACGCGGACTCC--------------------------------------------------------------------------------------------------------ACCACC-----------------------------------ACGGCGGCCC---------------------------------AGCAGCAACA---------G------------------CAGCAGCATCAGCAGCAGCAAC------------AGCAGCAGCAGCATCA---GCAGC---A---------------------------ACAGCAGCAGCA---GCAAC---ACC---A-------------------CCAG----CAG---CAAC--TG
droBia1 scf7180000302411:647487-647632 - AGCTCGC-----AGC----------GCCACA---------------------GCCACGC-----------------GG--CGGCGG------------------------CCCAAACG-----------CAG--------------------------GTCGCCGCC---------GCCGTT-------GCCAA--------------------------C-AG-------------------CAGACA---------------A------------------CAACAACAGCAGCAGCAGCAAC------------AGCAGCAGCAGCAACA---ACAG------AC--------------------CG--CCAGCAGCA------GCAGC---AGC---A---A----------------CAC----CGC--------GCC
droTak1 scf7180000415394:143440-143574 - GCCAC------------------------------------------------------GCCCAT-------------------------------------------------------------------------------------------------------------------------------------------GTCGGAGC---------------------------------AGCAGCAGCAACAGCAGCAGCAGTCGCAGGTGCAG------CAGCCGCAACAGCAGCAGCAACAGCAGCAGCAACAACAGCAACAGCA---ACAACAGCAGGT--------------------TG------T-------------GGGTCAGCAA----------------------CAG----CAG--------GCG
droEug1 scf7180000409553:228384-228504 + CGGTT-AAAA-T--------------GGCCGCTG------------------CTCA--------------------------------------------------------------------------------------------------------------AGC---------AGCAGCTGC-A-------------GC------------AG--------CC---------GCCTA-CCAAAA---------------T---------------------CAACAGCAGCAGCAGCAAC------------AACAACAGCAGCAGCA---ACAGC---A---------------------------ACAGCAGCAGCA---GC------AACAC----------------------CAC----CAG---------CA
dm3 chrX:8652151-8652297 - CCGA---------GC----------GCCG--------------A---------------GCAC------------------------------------------------------------------------------------TTGAT-----GGCCGCCGCAGC---------GGC-------A-------------GCG------GCG---CAGC-AA----------CAGGCGGC-GCAACA---------------G---------------------CAGCAGCAGCAGCAGCAAC------------AACAGCAGCAGCAGCA---ACAGC---AGAATGCGCAACAAGCGGCGAATCAGACGCAG------------CAGC---AGC---A-----------------------------GC--------AA
droSim2 2r:17663728-17663867 - AGCAA---------C----------TGCA------------------------------------------------------------------------------------------------------TGTGCAGTCTGCACAATTGCT-----GGCGGCAGC------------AGC-------A----------GCAGC---------AACTG--------C----------------CCAGCA---------------G---------------------CAACAGCAGCATCAACAAC------------ACCAGCA------ACA---ACAGC---A------------------------------GCAGCA------GCAAC---AGC---AGCAAAATGCCAGCAATCTGG--GCAA--AC---------AT
droSec2 scaffold_35:375592-375744 - AGCTT-GA-GC-AGC----------TCCA------AGA--------------------------------------------------------ACGCC--------------------------------------------------A--GCGGTGGCGGCAGCGGC---------GGCAGCT-----------------GC---------AGCAGCTC----------------ATCGG-CCAACA---------------G---------------------TCGCAGCAACAGCAACAAC------------AACGGCAGCAGCAGCA---ACAACAACT------------CACAGAGC---TC---CGGCGGCA------ACAAC---AGC---A-----------------------------ACAAGTCG-TCC
droYak3 3L:10555581-10555746 + GGCGT-------GGC----------GCCTT-----------------------------TTCCGGGCGCTCCGGCCGGCTATGCCGCCGCTCCGAATCCTGG------------A-------------------------------------------GCAGCGGTTGT------TGCCGC-------A-------------GC------------CG--------CC---------GCCGC-CCAACA---------------G---------------------CAGCAGCAGCAGCAACAAC------------AACAACAGCAGCAGCA---GGCCC---------------------------------AGCAGCA------ACAGC---AAC---A---ACA--------GGTGGCCGG----CGG---------CC
droEre2 scaffold_4690:8547123-8547274 - CACTA-------ACCGTCGCTACTCG-------GAATG----------------------CCCC------------------------------CAGCCAGG------------ATTG----------------------------------------GCCA-----GCTCCTTTCGCCGCGCCTCCGAGCTGCCGCCGTC-G--------------------------------------------CA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AGCAGCA---GCAGCA---GCTGC---------------------------------AGCAGCA------GCAGC---AGC---A---GAA--------TTCTGCTCG----TGC---------CT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCTT-------AGC----------GCCGC-----------------------------GCTCAA--------GGTGG--AGGCCG------------------------CCGAATTG----------------------------------------GCCGCTGCTGC------TGCCGTC-------GCTGC--------------------------C-AGCGT----------------CCAACT---------------G---------------------CCGCAGCAGCAACAACAAC------------AACAACAGCAGCAGCA---ACAGC---T-------------------------CTACAGCAGCT------GGAGC---GCC---A---GCA--------TGCAGA--GCATGCGT---------CCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................AACAACAAC------------AACAACAGCAGC..................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CAACAACAAC------------AACAACAGCAGCAGC...............................................................................................................25200.051000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CAGCAACAACAAC------------AACAACAGCA....................................................................................................................23200.051000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................ACAAC------------AACAACAGCAGCAGCA---...........................................................................................................21200.051000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AC------------AACAACAGCAGCAGCA---ACAGC---...................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGCTG-------AGG-----------TCA------------------------------------------------------------------------------------------------------G------GTGACAGAC--G--ACGTTGGCGACTGCGAC---------GGCAACT-----------------GC---------AACTG--------------------------------------------------------------------CCACAGCAGCAACAGCAAC------------AGCAACAGCAACAGCA---ACAGC---A---------------------------ACAGCAGCAGCAGCAGCAGC---AGCAGCA---G----------------CGG----CGT---------GCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................AACTG--------------------------------------------------------------------CCACAGCAGCAACAGCAAC------------..............................................................................................................................2420.501100000
................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---AGCAGCA---G----------------CGG----CG............21200.051100000
.........................................................................................................................................................................................................................................................................................................................................AGCA---ACAGC---A---------------------------ACAGCAGCAGCAGCAGCA.....................................................28200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC---AGCAGCA---G----------------CGG----CG............28200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---AGCAGCA---G----------------CGG----C.............18200.051000010
......................................................................................................................................................................................................................................................................................................................................AACAGCA---ACAGC---A---------------------------ACAGCAGCA..............................................................22200.051000001
droGri2
GCGC-TCAAA-C----------------A-----------------------------------------------A-------------------------------------------------------------ACGGCATACTCA--AA---AAT------------------GGCAACCGC-A-------------GC------------AG--------C------------------------G------------------CCAGCTTCAACAACAACAACAGCAGCAGCAACAAC------------AACAGCAGCAGCAGCA---ACAAC---A---------------------------ACAGCAGCA------GCAGTC--GCCAG----------------------CAGCAG-ACC---------ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAAC------------AACA..........................................................................................................................21200.10220
.......................................................................................................................................................................................................................................................................................ACAACAACAACAGCAGCAGCAACA............................................................................................................................................24200.05110
.............................................................................................................................................................................................................................................................................................................CAAC------------AACAGCAGCAGCAGCA---ACA........................................................................................................23200.05110
......................................................................................................................................................................................................................................................................................................................................AGCAGCA---ACAAC---A---------------------------ACAGCAGC...............................................................21200.05110
droWil2
ACATC-------AGC----------AGCAT-----------------------------GCCCATGT---------CC--AG-------------------G--------CCCAACAG-----------CAT--------------------------GCTGCCGCTGC------AGCTGCCGCC-----------------GC---------AGCCG--------C----------------TCATCA---------------G---------------------CAGCAGCAGCAACAACAAC------------AACAACAGCAGCAGCA---ACAGC---A---------------------------ACAACAACA------GCAGCATCTACAT----------------------GCG----CAA---------CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................CAACAG-----------CAT--------------------------GCTGCCGCTGC------AGT.........................................................................................................................................................................................................................................................................2313.00310020
................................................................................................................CAACAG-----------CAT--------------------------GCTGCCGCTGC------AGC.........................................................................................................................................................................................................................................................................2313.00300030
........................................................................................................................................................................................C-----------------GC---------AGCCG--------C----------------TCATCA---------------G---------------------CAGCA........................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................................................................................................ACAACAAC------------AACAACAGCAGCAGCA---...........................................................................................................24200.15300030
....................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---ACAGC---A---------------------------ACAACAACA------GCA.....................................................27200.10200011
..............................................................................................................................................................................................................................................................................................................AAC------------AACAACAGCAGCAGCA---ACAGC---...................................................................................................24200.10201010
................................................................................................................................................................................................................................................................................................................C------------AACAACAGCAGCAGCA---ACAGC---A---------------------------A......................................................................24200.10202000
.........................................................................................................................................................................................................................................................................................................................................AGCA---ACAGC---A---------------------------ACAACAACA------GCAGCA..................................................25200.10202000
..............................................................................................................................................................................................................................................................................................................AAC------------AACAACAGCAGCAGCA---AC.........................................................................................................21200.05101000
.........................................................................................................................................................................................................................................................................................................................................AGCA---ACAGC---A---------------------------ACAACAACA------GC......................................................21200.05101000
......................................................................................................................................................................................................................................................................................................GCAACAACAAC------------AACAACAGCAGC..................................................................................................................23200.05100010
................................................................................................................................................................................................................................................................................................................C------------AACAACAGCAGCAGCA---ACAGC---...................................................................................................22200.05101000
.................................................................................................................................................................................................................................................................................................................................................CAGC---A---------------------------ACAACAACA------GCAGCA..................................................20200.05100010
........................................................................................................................................................................................................................................................................................................AACAACAAC------------AACAACAGCAGCAGC...............................................................................................................24200.05100010
...................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---ACAGC---A---------------------------ACAACAACA------........................................................25200.05100010
..........................................................................................................................................................................................................................................................................................................................................GCA---ACAGC---A---------------------------ACAACAACA------GCA.....................................................21200.05101000
.................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCA---ACAGC---A---------------------------AC.....................................................................20200.05100010
...................................................................................................................................................................................................................................................................................................................................................GC---A---------------------------ACAACAACA------GCAGCA..................................................18200.05100010
........................................................................................................................................................................................................................................................A---------------G---------------------CAGCAGCAGCAACAACAAC------------A.............................................................................................................................22200.05100001
..............................................................................................................................................................................................................................................................................................................AAC------------AACAACAGCAGCAGCA---ACAG.......................................................................................................23200.05101000
.............................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCA---ACAGC---A---------------------------ACA....................................................................25200.05101000
.....................................................................................................................................................................................................................................................................................................AGCAACAACAAC------------AACAACAGCAGCAGCA---...........................................................................................................28200.05100010
dp5
GCCC-TCAAG-G--------------TGATTCGA------------------TTTACAC-----------------------------------------------------------------------------------------------------------------------GACGCCCGCCGGCTTCCATCATC-A----------------------------------------CCAACA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AACAACAGCAGCAGCA---ACAACAGCAGGC--------------------TG------CTGCG------GCAGTGGCAGCAG----------------------CAG----CGG---------CCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................AGCA---ACAACAGCAGGC--------------------TG------C..................................................................1920.5010010000000
........................................................................................................................................................................................................................................................................................................AGCAGCAGC------------AACAACAGCAGC..................................................................................................................21200.2040400000000
............................................................................................................................................................................................................................................................................................................GCAGC------------AACAACAGCAGCAGC...............................................................................................................20200.2040400000000
....................................................................................................................................................................................................................................................CAACA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AAC...........................................................................................................................28190.0510001000000
.............................................................................................................................................................................................................................................................................................................CAGC------------AACAACAGCAGCAGCA---ACA........................................................................................................23200.0510010000000
.....................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC------------AACAACAGCA....................................................................................................................22200.0510000001000
................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGC------------AACAACAGC.....................................................................................................................26200.0510010000000
........................................................................................................................................................................................................C-A----------------------------------------CCAACA---------------G---------------------CAGCAGCAGCAGCAGC.............................................................................................................................................25200.0510100000000
..........................................................................................................................................................................................................A----------------------------------------CCAACA---------------G---------------------CAGCAGCAGCAGCA...............................................................................................................................................22200.0510000100000
droPer2
GCCC-TCAAG-G--------------TGATTCGA------------------TTTACAC-----------------------------------------------------------------------------------------------------------------------GACGCCCGCCGGCTTCCATCATC-A----------------------------------------CCAACA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AACAACAGCAGCAGCA---ACAACAGCAGGC--------------------TG------CTGCG------GCAGTGGCAGCAG----------------------CAG----CGG---------CCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................ATC-A----------------------------------------CCAACA---------------G---------------------CAGCAGCAG....................................................................................................................................................2090.111010000
...........................................................................................................................................................................................................................................................................................................AGCAGC------------AACAACAGCAGC..................................................................................................................18200.102200000
....................................................................................................................................................................................................................................................CAACA---------------G---------------------CAGCAGCAGCAGC................................................................................................................................................19200.051001000
droAna3
CGCCA-------TGC-TGGCCGCTCG-------CAACGGTGCCGGCGGGCAGATTCC--------------------------------------------------------------------------------------------------------GCCTCC-----------------------------------GCCCCCGCCCGT---TGGC-AGTGC----------------CCAGCA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AACAGCAACAGCAGCAGCAACAAC---A---------------------------ATCGCATCA------GCAAC---CTC---A---T----------------CAT-----GG---------GASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................CG-------CAACGGTGCCGGCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................1850.201000010
............................................................................................................................................................................................................................................................................................................GCAGC------------AACAGCAACAGCAGCAGC............................................................................................................23200.153120000
..............................................................................................................................................................................................................................................................................................................AGC------------AACAGCAACAGCAGCAGC............................................................................................................21200.102010001
......................................................................................................................................................................................................................................................................................................GCAGCAGCAGC------------AACAGCAACAGC..................................................................................................................23200.102010001
...............................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGC------------AACAGCAACA....................................................................................................................28200.051010000
...................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAAC---A---------------------------.......................................................................19200.051100000
..................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC------------AACAGC........................................................................................................................21200.051000001
.......................................................................................................................................................................................................................................................................................................CAGCAGCAGC------------AACAGCAACAG...................................................................................................................21200.051000001
........................................................................................................................................................................................................................................................A---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AAC...........................................................................................................................24200.051010000
.......................................................................................................................................................................................................................................................CA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AAC...........................................................................................................................25200.051010000
......................................................................................................................................................................................................................................................GCA---------------G---------------------CAGCAGCAGCAGCAGCA............................................................................................................................................21200.051010000
.................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGC------------AACAGCAAC.....................................................................................................................25200.051010000
........................................................................................................................................................................................................................................................................................................AGCAGCAGC------------AACAGCAACAGCAGC...............................................................................................................24200.051001000
............................................................................................................................................................................................................................................................................................................GCAGC------------AACAGCAACAGCAGCAGCAAC.........................................................................................................26200.051010000
...........................................................................................................................................................................................................................................................................................................AGCAGC------------AACAGCAACAGCAGC...............................................................................................................21200.051010000
.......................................................................................................................................................................................................................................................................................................CAGCAGCAGC------------AACAGCAAC.....................................................................................................................19200.051100000
...............................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGC------------AACAGCA.......................................................................................................................25200.051000001
.................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGC------------AACAG.........................................................................................................................21200.051010000
droBip1
CACCA-------GTTGGCG------------------G--CCCA-----------------------------CTAGC--AATCAG-------AAATCCAGG------------A------------------------------------------GTCGAACTCAGC---------TGC-------A-------------GCT------GCGTCCACTCCTGCATCCCTCAATAGTCTAAGCCAGCA---------------A---------------------CAGCAGCAGCAGCAACAAC------------AACAGCAGCAGCAGCA---ACACC---AG------------------------CAACAGCAGCA------GCAACACCAACAG----------------------CAG----CAG---CACACACCSizeHit CountTotal NormTotal
No Reads
droKik1
CTCCA-------CACGGCG------------------C--CCGA-----------------------------TGTGA--ATCCCG-------CTGCCCAGG------------G------------------------------------------TGC-GTCGCAGC---------AGC-------A-------------GCA------TCA---CTTC-AGCGC----------------CCATCA---------------G---------------------CAGCAGCAACAGCAACAGC------------AGCAGCAGCAGCAGCA---ACATC---AT------------------------CTTCAGCAACA------GCAGC---AGC---A---G----------------CAT----T-GCAGCATG-TTCSizeHit CountTotal NormTotal
No Reads
droFic1
GGATC-------AGC----------ATCTG-----------------------------GTTCGGGA---------TC--GG-------------------GATCGGGCTCCGGATCGGCCTCCAACTACTCACAGAAG-----------------------CTGC-------------------------------------------------------------------------------------A------------------CCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAAC------------AGCAGCAGCAGCAGCA---ACACC---AC------------------------CAGCAGCAGCA------GCAGCTGCTGCAG----------------------GAG----CTG---------CASizeHit CountTotal NormTotal
No Reads
droEle1
TC----------AGC----------ACCACACGA-AGA--TCGAGGATGCGGACTCC--------------------------------------------------------------------------------------------------------ACGACA-----------------------------------ACGGCAGCCC---------------------------------AGCAGCAGCAACATCAGCAG---------------------CAGCAACAGCAGCAGCAGC------------AACAGCAGCAGCAGCA---ACAGC---AG------------------------CAACAGCAGCA------GCAGCAACAACAT----------------------CAA----CAG---------CASizeHit CountTotal NormTotal
No Reads
droRho1
ACTT-CC-----AGC----------ACCACACGA-AGA--TCGAGCACGCGGACTCC--------------------------------------------------------------------------------------------------------ACCACC-----------------------------------ACGGCGGCCC---------------------------------AGCAGCAACA---------G------------------CAGCAGCATCAGCAGCAGCAAC------------AGCAGCAGCAGCATCA---GCAGC---A---------------------------ACAGCAGCAGCA---GCAAC---ACC---A-------------------CCAG----CAG---CAAC--TGSizeHit CountTotal NormTotal
No Reads
droBia1
AGCTCGC-----AGC----------GCCACA---------------------GCCACGC-----------------GG--CGGCGG------------------------CCCAAACG-----------CAG--------------------------GTCGCCGCC---------GCCGTT-------GCCAA--------------------------C-AG-------------------CAGACA---------------A------------------CAACAACAGCAGCAGCAGCAAC------------AGCAGCAGCAGCAACA---ACAG------AC--------------------CG--CCAGCAGCA------GCAGC---AGC---A---A----------------CAC----CGC--------GCCSizeHit CountTotal NormTotal
No Reads
droTak1
GCCAC------------------------------------------------------GCCCAT-------------------------------------------------------------------------------------------------------------------------------------------GTCGGAGC---------------------------------AGCAGCAGCAACAGCAGCAGCAGTCGCAGGTGCAG------CAGCCGCAACAGCAGCAGCAACAGCAGCAGCAACAACAGCAACAGCA---ACAACAGCAGGT--------------------TG------T-------------GGGTCAGCAA----------------------CAG----CAG--------GCGSizeHit CountTotal NormTotal
No Reads
droEug1
CGGTT-AAAA-T--------------GGCCGCTG------------------CTCA--------------------------------------------------------------------------------------------------------------AGC---------AGCAGCTGC-A-------------GC------------AG--------CC---------GCCTA-CCAAAA---------------T---------------------CAACAGCAGCAGCAGCAAC------------AACAACAGCAGCAGCA---ACAGC---A---------------------------ACAGCAGCAGCA---GC------AACAC----------------------CAC----CAG---------CASizeHit CountTotal NormTotal
No Reads
dm3
CCGA---------GC----------GCCG--------------A---------------GCAC------------------------------------------------------------------------------------TTGAT-----GGCCGCCGCAGC---------GGC-------A-------------GCG------GCG---CAGC-AA----------CAGGCGGC-GCAACA---------------G---------------------CAGCAGCAGCAGCAGCAAC------------AACAGCAGCAGCAGCA---ACAGC---AGAATGCGCAACAAGCGGCGAATCAGACGCAG------------CAGC---AGC---A-----------------------------GC--------AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................AGCGGCGAATCAGACGCAG------------CAGT---................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCCG--------------A---------------GCAC------------------------------------------------------------------------------------TTGAT-----GGCCGC........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................A---ACAGC---AGAATGCGCAACA......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................CAGCAAC------------AACAGCAGCAGCAG................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000020002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAAC------------AACAGCAGCAGCAGC...............................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC------------AACAGC........................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
....................................................................................................................................................................................................................................................CAACA---------------G---------------------CAGCAGCAGCAGCAG..............................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
................................................................................................................................................................................................................................................................................................................C------------AACAGCAGCAGCAGCA---AC.........................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAAC------------AACAGCAGC.....................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AGCAAC------------AACAGCAGCAGCAG................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000
....................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC------------AACAGCAGC.....................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGCAGCAAC------------AACAGCAGCAGCAGCA---AC.........................................................................................................27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CAGCAGCAAC------------AACAGCAGCAGCAGC...............................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................................................................................GGC-GCAACA---------------G---------------------CAGCAGCAGCA..................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GC-GCAACA---------------G---------------------CAGCAGCAGCA..................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CAGCAAC------------AACAGCAGCAGCAGCA---AC.........................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................AACA---------------G---------------------CAGCAGCAGCAGCA...............................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GCAAC------------AACAGCAGCAGCAGCA---ACAGC---...................................................................................................26120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................ACA---------------G---------------------CAGCAGCAGCAGCAGCAAC------------AACA..........................................................................................................................27180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAAC------------AACAGCA.......................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCA---ACAGC---A..................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CAGCAAC------------AACAGCAGCAGCAGCA---...........................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AACA---------------G---------------------CAGCAGCAGCAGC................................................................................................................................................18200.0510000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---ACAGC---...................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC------------AACAGCAGCAG...................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................CAACA---------------G---------------------CAGCAGCAGCAGCAGCAAC------------..............................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCA---AC.........................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGCAGCAAC------------AACAGCAGCAGCAGC...............................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCA---AC.........................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................C------------AACAGCAGCAGCAGCA---ACA........................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCAGCAAC------------AACAGCAGCAGCAGCA---AC.........................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AAC------------AACAGCAGCAGCAGCA---A..........................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AGCAAC------------AACAGCAGCAGC..................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................C-GCAACA---------------G---------------------CAGCAGCAGCAGCA...............................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCA---ACAGC---...................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAAC------------AACA..........................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC------------AACAGCAGCAGCA.................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAAC------------AACAGCA.......................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................C-GCAACA---------------G---------------------CAGCAGCAGCA..................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CA---------------G---------------------CAGCAGCAGCAGCAGCAAC------------..............................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GCAAC------------AACAGCAGCAGCAGCA---A..........................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAAC------------AACAGCAGCAGC..................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC------------AACAGCAG......................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CAGCAAC------------AACAGCAGCAGCA.................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CAACA---------------G---------------------CAGCAGCAGCAGCAGCA............................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC------------AACAGCAGCA....................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAAC------------A.............................................................................................................................19200.0510000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................CAGCAGCAAC------------AACAGCAGCAGC..................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCAA---------C----------TGCA------------------------------------------------------------------------------------------------------TGTGCAGTCTGCACAATTGCT-----GGCGGCAGC------------AGC-------A----------GCAGC---------AACTG--------C----------------CCAGCA---------------G---------------------CAACAGCAGCATCAACAAC------------ACCAGCA------ACA---ACAGC---A------------------------------GCAGCA------GCAAC---AGC---AGCAAAATGCCAGCAATCTGG--GCAA--AC---------ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................GCGGCAGC------------AGC-------A----------GCAGC---------AA....................................................................................................................................................................................................................................19151.0716000016000000000000
....................................................................................................................................................................................................................................................................................................................................................C---A------------------------------GCAGCA------GCAAC---AGC---..........................................16200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................GCA------ACA---ACAGC---A------------------------------GCAGCA------G.......................................................19200.05100000000000100000
droSec2
AGCTT-GA-GC-AGC----------TCCA------AGA--------------------------------------------------------ACGCC--------------------------------------------------A--GCGGTGGCGGCAGCGGC---------GGCAGCT-----------------GC---------AGCAGCTC----------------ATCGG-CCAACA---------------G---------------------TCGCAGCAACAGCAACAAC------------AACGGCAGCAGCAGCA---ACAACAACT------------CACAGAGC---TC---CGGCGGCA------ACAAC---AGC---A-----------------------------ACAAGTCG-TCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................ACAGAGC---TC---CGGCGGCA------ACA.....................................................2011.0010010
................................................................................................................................................................................................................................................................................................................C------------AACGGCAGCAGCAGCA---ACA........................................................................................................2080.1310100
...........................................................................................................................................................................................................................................................................................................AACAAC------------AACGGCAGCAGC..................................................................................................................18120.0810010
droYak3
GGCGT-------GGC----------GCCTT-----------------------------TTCCGGGCGCTCCGGCCGGCTATGCCGCCGCTCCGAATCCTGG------------A-------------------------------------------GCAGCGGTTGT------TGCCGC-------A-------------GC------------CG--------CC---------GCCGC-CCAACA---------------G---------------------CAGCAGCAGCAGCAACAAC------------AACAACAGCAGCAGCA---GGCCC---------------------------------AGCAGCA------ACAGC---AAC---A---ACA--------GGTGGCCGG----CGG---------CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................A-------------------------------------------GCAGCGGTTGT------TGCCGC-------A-------------GC------------CG--------CC---------GCC...........................................................................................................................................................................................................2811.00100100000000
......................................................................................................................................................................................................................................................................................................GCAGCAACAAC------------AACAACAGCAGCAGCA---...........................................................................................................27120.08101000000000
........................................................................................................................................................................................................................................................................................................AGCAACAAC------------AACAACAGCAGC..................................................................................................................21200.05101000000000
........................................................................................................................................................................................................................................................................G---------------------CAGCAGCAGCAGCAACAAC------------AACAA.........................................................................................................................25200.05101000000000
.............................................................................................................................................................................................................................................................................................................CAAC------------AACAACAGCAGCAGCA---...........................................................................................................20200.05100001000000
droEre2
CACTA-------ACCGTCGCTACTCG-------GAATG----------------------CCCC------------------------------CAGCCAGG------------ATTG----------------------------------------GCCA-----GCTCCTTTCGCCGCGCCTCCGAGCTGCCGCCGTC-G--------------------------------------------CA---------------G---------------------CAGCAGCAGCAGCAGCAGC------------AGCAGCA---GCAGCA---GCTGC---------------------------------AGCAGCA------GCAGC---AGC---A---GAA--------TTCTGCTCG----TGC---------CTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................GCAGCA---GCTGC---------------------------------AGCAGCA------GCA.....................................................21190.0511000000

Generated: 05/16/2015 at 09:42 PM