ID:

dvi_11193

 Coordinate:

scaffold_12963:10122500-10122650 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.9 -1.8 -1.6

Flybase annnotation

CDS [Dvir\Mhc-cds]; exon [dvir_GLEANR_1905:9]; intron [Dvir\Mhc-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTGACGTCGAACTGCTAACACGTCTCTCTACAAGCTAGGATTGGGTTTACTTGGGCAATACTTTGGATTAGTTCCAATTAGGTGCACTTTACGCACTCCATGCACACACAACTCAATTACAACAAATGATAAAAAGTCAAACTTTAGAGCTGCTTAATATATAATATGTAAATATTCCCCATTCCTCCAAACCAACGTAGTACAATGGCTTCGAGCAGTTGTGTATTAACTTCACCAATGAGAAATTGCA
**********************************************************************************************.................................((((.....)))).......(((.((...(((((.((.....)).)))))...))...))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 SRR060664
9_males_carcasses_total
 V116
male body		 SRR060668
160x9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 M061
embryo
 SRR060669
160x9_females_carcasses_total
 V053
head
 M027
male body		 SRR060657
140_testes_total
 SRR060679
140x9_testes_total
 M028
head
 SRR060687
9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
.............................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTA......................... 21 0 1 7.00 7 5 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTATT....................... 23 0 1 6.00 6 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTATTAAC.................... 26 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGT.......................... 20 0 1 4.00 4 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTCACC.............. 23 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTTCACCAATGAGAAATTGCA 21 0 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATT....................... 24 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTACAATGGCTTCGAGCAGTTG............................. 22 1 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTATT....................... 22 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AACTTCACCAATGAGAAAT.... 19 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACTTCACCAATGAGAAATTGCA 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTATTA...................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTATTAAC.................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTCACCAATGA......... 28 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAACTTCACCAA............ 28 0 1 2.00 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGCTTCGAGCAGTTGTGTATTAAC.................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTA......................... 22 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GACTACAATGGCTTCGAGCAGTTG............................. 24 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTA......................... 20 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TCCCCATTCCTCCAAACCAACGTAGTA................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TTCCTCCAAACCAACGTAG.................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATTAA..................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGAGCAGTTGTGTATTAAC.................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTAT........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTTGTGTATTAACTTCACCA............. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGATTAACTTCACCAATGAGA....... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TTCACCAATGAGAAATTGC. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACCAAT........... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGAGCAGTTGTGTATTAACTTCA................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAAC.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTATTAACT................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACCAATGA......... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TACAATGGCTTCGAGCAGTTGTG........................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCTTCGAGCAGTTGTGTATT....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGGACGGCGAACTGCTAAC....................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTC................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATTA...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAACTTCACC.............. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CACTCCATGCACACACAACTCAATTAC.................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GAGCAGTTGTGTATTAAC.................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TAACTTCACCAATGAGAAA..... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATTAACTTCACCAATGAGA....... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAG........ 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACCAATGAG........ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCGAGCAGTTGTGTATTA...................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GACTACAATGGCTTCGAGCAGT............................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACC.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TACAATGGCTTCGAGCAGTTGTGTA......................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGAGCAGTTGTGTATTAAA.................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCGAGCAGTTGTGTATTAA..................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TAACTTCACCAATGAGAAATTGCA 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAACTTCAC............... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ACAATGGCTTCGAGCAGTTGT............................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTG........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTTGTGTATTAACTTCACC.............. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................ATTAGTTCCAATTAGGTGCACTTTACGC............................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................ACTACAATGGCTTCGAGCAGTTG............................. 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GACTACAATGGCTTCGAGCAG................................ 21 2 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTCACCA............. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTTGTGTATTAACTTCACCAATG.......... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGAGGATTGGGTTTACTTGGGC.................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTATTAACTTCACCAATGA......... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGT............................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ACTACAATGGCTTCGAGCAGTTGT............................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGAGCAGTTGTGTATTAACTTCACC.............. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATTAACT................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TCACCAATGAGAAATTGCA 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTAT........................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CGACTACAATGGCTTCGAGCAGT............................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CAATACTTTGGATTAGTTT................................................................................................................................................................................ 19 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................AAGGTCAAAGTTGAGAGCTGCT................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................CAACAAATGATTGAAAGTCATA............................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.TGGACGGCGAACTGCTAACG...................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................ATTGGGTTTACCTGCGCA................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................AAACGTTAGAGCTGCTTTA............................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TAACTGCAGCTTGACGATTGTGCAGAGAGATGTTCGATCCTAACCCAAATGAACCCGTTATGAAACCTAATCAAGGTTAATCCACGTGAAATGCGTGAGGTACGTGTGTGTTGAGTTAATGTTGTTTACTATTTTTCAGTTTGAAATCTCGACGAATTATATATTATACATTTATAAGGGGTAAGGAGGTTTGGTTGCATCATGTTACCGAAGCTCGTCAACACATAATTGAAGTGGTTACTCTTTAACGT
**************************************************.................................((((.....)))).......(((.((...(((((.((.....)).)))))...))...))).............********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060689
160x9_testes_total
 M061
embryo
............................................................................................................................................................................................................TGGCCGAAGCTCGTCAACA............................ 19 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................GGTAAGGAGGTTTCGTTTCAA................................................... 21 3 4 0.25 1 0 1 0 0 0 0
........................................................................................................................................................................................GTAGGTTTGGTTGCAACA................................................. 18 2 4 0.25 1 0 0 1 0 0 0
............................................................................................................................................................................................................................AAACAAAATTGAAGTGGTT............ 19 2 14 0.14 2 0 0 0 2 0 0
....................................................ACCCGTTATGAAACCTTG..................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 1 0
..................................................................CTAATCATGGTCAATCGA....................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:10122450-10122700 + dvi_11193 ATTGAC---GTCG-AACTGCTAACA--CGTCTCTC-TACA----AGC-TAGGA-------------------------T-T------------------GGGTTTACTTGGGCAATAC-T-TTGGATTAGTT-------CCAA----T----TAGGTGCACT----TTACGCACTC---C-ATGCAC--------ACACA---A--------C------TCAATTACAACAAATGATAAAAA------------GTCAA-------ACTT---------------TAGAGCT------------------------------------------------------------------------GCTTAAT--A--TAT-AATATGTAAATATTC--CCCA----TTCCTCCAA--ACC--AACGTAGTACAATGGCTTCGAGCAGTTGTGTATTAACTTCACCAATGAGAAATTGCA
droMoj3 scaffold_6500:2802584-2802834 + ATTGACG--TCCA-CACAGCTAACA--CGTCTCTT-CACA----AGC-TAGGTA------------------------TAT------------------GGGTTTACTTGGGTAAAATGT-TTGGACACGTT-------CCAA----T----TAGATGCACACT--CCATGCACTC-------ACTCACATACACACAC------------------------------AGAGTTACTT-CAATTACAAAGAAA-------TATAAACTT---------------TAGTACT------------------------------------------------------------------------GCTCAG------TAT-AATATGTAAATATTC--CCCC----T-------A--TCC--AACGTAGTACAATGGCTTCGAACAGTTGTGTATTAACTTCACCAATGAGAAATTGCA
droGri2 scaffold_15252:13256666-13256930 + ATTGATGTCGCCGAAACTGCTAACA--CGTCTCTC-GACAA---AGT-TAGGCAAATGGG------------------TT-----------------------TGACTTGAGTAATAC-CTAT-GACTAGTT-------TCAA-------TTCAGGTGCACACTCTATGCACACTCTATGCACACAC--------AC---AGAACACGCACAC----------------ACACTCACACACAATCTCAAAGAAA--------------AT---------------CAGAAC---------------------------------------------------------------------------TCCTT--GTATTT-AATATGTAAATATTG--CCTA----TCC-----A--ATC--AACGTAGTACAACGGCTTCGAACAGTTGTGTATTAACTTCACCAATGAGAAGTTGCA
droWil2 scf2_1100000004577:1133322-1133410 + CTTACTA---------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ACATGTTTATATTG--TTCT----T----------ACG--AATCTAGTACAACGGTTTCGAACAATTATGCATCAATTTCACTAACGAAAAACTGCA
dp5 4_group3:3005485-3005774 - ---------GCCG-ACCTGCTAACA--CGTCTCTC-AACAG-TTAGT-TAGGAGGGAGGGTAAGGTCAT-----TAAAATC------AGAATCGGAATCAGAATCAATA-----------------------TGG-G----------T----TAGGTGCACTCACTCTTCGCACAA---GCACACTC--------AC--------------------------------AGAATCAAACAAA------------AGAAA--TCTACACCA---------CCTTCATGGCACCATAACCATAGAGTTCTAG--TTC--------------------------------------TCT---CAAACGATCACT--AT-AATTGTTCTGTAAATAATC--CCAC----TTC-----AACTT-GCGATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAACGAGAAGTTGCA
droPer2 scaffold_1:4492227-4492510 - ---------GCCG-ACCTGCTAACA--CGTCTCTC-AACAG-TTAGT-TAGGAGGGAGGGTAAGGTCA----------TTC------A-AATCAGAATCAGAATCAATA-----------------------TGG-G----------T----TAGGTGCACTCACTCTTCGCACAA---GCACACTC--------AC--------------------------------AGAATCAAACAAA------------AGAAA--TCTACACCA---------CCTTCATGGCACCATAACCATTGAGTTCTAG--TTC--------------------------------------TCT---CAAACGATCACT--AT-AATTGTTCTGTAAATATTC--CCAC----TTC-----AACTT-GCGATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAACGAGAAGTTGCA
droAna3 scaffold_12916:7334541-7334766 + TG------------------------------------------AAA-TA--GA------------------------ATC------AGAATCAGAACCAGAATCACTA-----------------------GGG--------------------GTGGAACATTTCTTCGCACTTC--GAACACTC--------AC--------------------------------AGATCCACACAA-------------GACACTC-----A------------------CAG--------CCG--------TAG--AAAGAAGTAATCCTTAGA------------CTCT------CCCTAGATATTAGATAACG--AG-TAT-AATCTGTAAATATTC--CTAA----A----------TCCGAAATGTAGTACAACGGCTTCGAACAACTGTGTATTAACTTCACCAATGAGAAACTGCA
droBip1 scf7180000396566:504213-504487 + C--------GCTG-ACCTGCTAACA--CGTCTCTC-ATCAGTTTAGTTTAGGGA------------CATTGAATTCAAATC------AGAAACAGAACCAGAATCACTC-----------------------GGG--------------------GTGCAACCTGTCTTCGCACTT---GAACACTC--------AC--------------------------------AGGGCCACACAA-------------GACACAC-----A------------------CAG--------CCG--------TAG--AAAGAAGAAACCCTTAGA------------CTTTTTTATCCCCTAGATATTAGATAACG--AG-TAT-AATCTGTAAATATTC--CTGA----A----------TCC-GAATGTAGTACAACGGCTTCGAACAACTGTGTATTAACTTCACCAATGAGAAACTGCA
droKik1 scf7180000302472:41087-41350 + ---------GCTG-ACTTGCTAACA--CGTCTCTC-AACAGTTTAGC-TAGGCA------------------------TTC------------------AAAATCACTC-----------------------GGG-CTA---TCTACAAAG-GTGGTGCACCC-TTCTTCGCACCA---AAA-------------AC---AAAAAAAGAACAAACTCTC----------AGAAACACACAA-------------TATAC-------ACAGAAGCAACAG------TAGCA--------G--------TAG--A-----------CTTAGA-------TAACCC----------AC------TTTTATCGCT--AT-TTT-ATTGTGTAAATATTC--CCGA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAGCTGCA
droFic1 scf7180000454078:701789-702067 + ATCCACA--GCCG-ACCTGCTAACA--CGTCTTTC-AACAGTTTAGC-TAGGGC------------------------CTCAGATTGAGAATCAGAATCAAAATCACTG-----------------------GGG-GAACTGC----A----TTGGTGCAACCACTCTTCGCACTCA--AAACGCCC--------AC--A-----------------------------AAAACCACACAAA------------GATACAC---ACACTG---------------TAGCACAAT--CCG--------TAG--AAA--------TCTTAGATGCTGAACGGCTC-----------------------ACCTT--GT-TTT-AATATGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droEle1 scf7180000490579:567576-567824 - ATTCACA--GCTG-ACCTGCTAACA--CGTCTCTT-AACAGTTTAGC-TAGGGA------------------------TTC------------------AGAATCACTC-----------------------GGG-GAACTATGT----ACATAGGTGCAACCTGTCTTCGCACTT---AAACGCTC--------AC--------------------------------AAAACCACACAAA------------GATAC-------ACAG---------------CAGCACTAT--CCG--------TAG--AAA--------------------------------------CCT---TAAACGATCACT--AT-TTT-ATTATGTAAATATTC--CCAA----C----------TCC--GATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droRho1 scf7180000780103:207280-207546 - ATTCACA--GCTG-ACCTGCTAACA--CGTCTTTT-AACAGTTTAGC-TAGGGA------------------------TTC------------------AGAATCACTC-----------------------GGG-GAACTAC----A----TAGGTGCAACCTCTCTTCGCATTT---AAACGCCC--------AC--------------------------------AAAACCACACAAA------------TATAC-------ACTG---------------CAGCACCAT--CCT--------TAG--AAA--------CCTTAGAGGCTGAATAGCTC----------ACT---TAAACGATCACT--AT-TTT-ATTATGTAAATATAATTCCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droBia1 scf7180000301468:942785-943049 + ATCTCCA--GCTG-ACCTGCTAACA--CGTCTTTT-AAA-GTTTAGC-TAGGGA------------------------CTC------AGAATCAGAATCAGAATCACTC-----------------------GGGGGACCTCC----A----TAGGTGCAACCTATCTTCGCACTT---GAACGCCC--------AC--A-----------------------------AAAACCACACAAA------------GATAC-------ACCT---------------TAGCACTAT--GCG--------TAG--ATA--------------------------------------CCT---TATATGATCTGCATAT-TTT-ACCGTGTAAATATTC--TTGAATAAC----------TCC-AAATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droTak1 scf7180000415914:521616-521854 + ATCCCCA--GCTG-ACCTGCTAACA--CGTCTTTC-AACAGTTTAGC-TAGGGA------------------------CTC------------------AGAACCACTC-----------------------GGGGGAACTAC----A----TAGGTGCAACCTGTCTTCGCACTT---AA---------------------------------------------------ACCACACAAA------------GTTAC-------ACTG---------------TAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---TATATGAACCCC--AT-TTT-ATCGTGTAAATATTC--TTGAATAAC----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droEug1 scf7180000408961:347897-348151 + ATTCCCA--GCTG-ACCTTCTAACA--CGTCTTTTTAACAGTTTAGC-TAGGGA------------------------TTC------A------GATTCAGAATCACTC-----------------------GGG-GAACCAT----A----TAGGTGCAACCTGTCTTCGCACAT---AAACGCCC--------ACC-T-----------------------------AAAACTACACAAA------------GTTAC-------ACTG---------------TAGCACTAT--CCG--------TAG--ATA--------T-----------------------------CCT---TAAACGATCACT--AT-TTT-ATTATGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
dm3 chr2L:16774996-16775260 + ATCACCA--GTCG-ACCTGCTAACACACGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAACAT----ATGTAGGTGCAACCTATCTTCGCACTA---AAACGCCC--------AC--------------------------------CAAACAACACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAGAGTTA--------------------------------------CCT---TGATAGATCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droSim2 2l:16341672-16341934 + ATCACCA--GCCG-ACCTGCTAACACATGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAACAT----ATTTAGGTGCAACCTATCTTCGCACTA---AAACGCCC--------AC--------------------------------CAAACCACACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---TAATAGATCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droSec2 scaffold_7:421734-421995 + ATCACCA--GTCG-ACCTGCTAAC-CACGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGATTCCGATTCAGAATCACTC-----------------------GGG-GAACAACAT----ATTTAGGTGCAACCTATCTTCGCACTA---AAACGCCC--------AC--------------------------------CAAACAACACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---CAATAGATCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droYak3 2R:4326813-4327068 - ATCCCCA--GCCG-ACCTGCTAACA--CGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAAA----A----TAGGTGCAACCTATCTTCGCACTG---AAACAC-C--------AC--------------------------------AAAACAATACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---TACTAGAGCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA
droEre2 scaffold_4845:19845650-19845898 + ---------GCCG-ACCTGCTAACA--CGTCTCTT-AAAGATTTGGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAAC----G----TAGGTGCAACCTATCTTCGCACTG---AAACGCCC--------AC--------------------------------AAAACCACACAAA------------GATAC-------ACTG---------------CAGCACCAT--TCC--------TAG--TTA--------------------------------------CCT---CAATAGATCACT--AT-T-T-AAATTGTAAATATTC--CCCA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATTGAC---GTCG-AACTGCTAACA--CGTCTCTC-TACA----AGC-TAGGA-------------------------T-T------------------GGGTTTACTTGGGCAATAC-T-TTGGATTAGTT-------CCAA----T----TAGGTGCACT----TTACGCACTC---C-ATGCAC--------ACACA---A--------C------TCAATTACAACAAATGATAAAAA------------GTCAA-------ACTT---------------TAGAGCT------------------------------------------------------------------------GCTTAAT--A--TAT-AATATGTAAATATTC--CCCA----TTCCTCCAA--ACC--AACGTAGTACAATGGCTTCGAGCAGTTGTGTATTAACTTCACCAATGAGAAATTGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTA.........................2117.007005000000000000011000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTATT.......................2316.006005000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTATTAAC....................2615.005004000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGT..........................2014.004003000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTCACC..............2313.003002000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCAATGAGAAATTGCA2113.003000000000000000002100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATT.......................2413.003000000000000001002000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTATT.......................2212.002000000000000000001010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAATGAGAAAT....1912.002000000000000000001100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCACCAATGAGAAATTGCA2212.002001000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTATTA......................2412.002002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTATTAAC....................2512.002001000010000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTCACCAATGA.........2812.002000000000000000000100010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAACTTCACCAA............2812.002000000000000000000110000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAGTTGTGTATTAAC....................2412.002001000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTA.........................2212.002001000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTA.........................2012.002001000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TC--CCCA----TTCCTCCAA--ACC--AACGTAGTA................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCAA--ACC--AACGTAG..................................................1911.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATTAA.....................2611.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGTTGTGTATTAAC....................1911.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAGCAGTTGTGTAT........................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGTATTAACTTCACCA.............2011.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCAATGAGAAATTGC.1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACCAAT...........2511.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGTTGTGTATTAACTTCA................2311.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAAC....................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCGAGCAGTTGTGTATTAACT...................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACCAATGA.........2711.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATGGCTTCGAGCAGTTGTG...........................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAGTTGTGTATT.......................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTC.................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATTA......................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAACTTCACC..............2611.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................CACTC---C-ATGCAC--------ACACA---A--------C------TCAATTAC...........................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGTTGTGTATTAAC....................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCACCAATGAGAAA.....1911.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACTTCACCAATGAGA.......1911.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAG........2311.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACCAATGAG........2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGCAGTTGTGTATTA......................1911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTGTATTAACTTCACC..............2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATGGCTTCGAGCAGTTGTGTA.........................2511.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGTTGTGTATTAAA....................1911.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGCAGTTGTGTATTAA.....................2011.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCACCAATGAGAAATTGCA2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGTTGTGTATTAACTTCAC...............2511.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCTTCGAGCAGTTGT............................2111.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTG...........................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGTATTAACTTCACC..............1911.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................ATTAGTT-------CCAA----T----TAGGTGCACT----TTACGC..................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGTGTATTAACTTCACCA.............2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGTATTAACTTCACCAATG..........2311.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACTTCACCAATGA.........1911.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGT............................1911.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGTTGTGTATTAACTTCACC..............2511.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTATTAACT...................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAATGAGAAATTGCA1911.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTTCGAGCAGTTGTGTAT........................2311.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................CAATAC-T-TTGGATTAGTT-------T..................................................................................................................................................................................................................................................................................................................................................1930.331000100000000000000000000000000000000000000000000000000000000000
droMoj3
ATTGACG--TCCA-CACAGCTAACA--CGTCTCTT-CACA----AGC-TAGGTA------------------------TAT------------------GGGTTTACTTGGGTAAAATGT-TTGGACACGTT-------CCAA----T----TAGATGCACACT--CCATGCACTC-------ACTCACATACACACAC------------------------------AGAGTTACTT-CAATTACAAAGAAA-------TATAAACTT---------------TAGTACT------------------------------------------------------------------------GCTCAG------TAT-AATATGTAAATATTC--CCCC----T-------A--TCC--AACGTAGTACAATGGCTTCGAACAGTTGTGTATTAACTTCACCAATGAGAAATTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAACAGTTGTGTATTAAC....................2614.004100003
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAACAGTTGTGTATTA......................2413.003000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAACAGTTGTGTATT.......................2312.002000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTCGAACAGTTGTGTATTAACT...................2711.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCGAACAGTTGTGTATTAACT...................2611.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACAGTTGTGTATTAAC....................2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAACAGTTGTGTATTAACT...................2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGCTTCGAACAGTTGTGTATTAAC....................2811.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAACAGTTGTGTATT.......................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCTTCGAACAGTTGTGTATT.......................2611.001000001
droGri2
ATTGATGTCGCCGAAACTGCTAACA--CGTCTCTC-GACAA---AGT-TAGGCAAATGGG------------------TT-----------------------TGACTTGAGTAATAC-CTAT-GACTAGTT-------TCAA-------TTCAGGTGCACACTCTATGCACACTCTATGCACACAC--------AC---AGAACACGCACAC----------------ACACTCACACACAATCTCAAAGAAA--------------AT---------------CAGAAC---------------------------------------------------------------------------TCCTT--GTATTT-AATATGTAAATATTG--CCTA----TCC-----A--ATC--AACGTAGTACAACGGCTTCGAACAGTTGTGTATTAACTTCACCAATGAGAAGTTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTG--CCTA----TCC-----A--ATC--AACGTAGTACAA.............................................2711.00110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAATGAGAAGTTGC.2211.00110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCACCAATGAGAAGTTG..2011.00110
...........................................................................................................................................................................................................ACACGCACAC----------------ACACTCACA................................................................................................................................................................................................................................................19200.05110
droWil2
CTTACTA---------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ACATGTTTATATTG--TTCT----T----------ACG--AATCTAGTACAACGGTTTCGAACAATTATGCATCAATTTCACTAACGAAAAACTGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGTTTCGAACAATT..............................1811.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATGCATCAATTTCACTAACGAAA.......2711.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAACAATTATGCATCAAT....................2111.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCAATTTCACTAAC...........2011.00100010
dp5
---------GCCG-ACCTGCTAACA--CGTCTCTC-AACAG-TTAGT-TAGGAGGGAGGGTAAGGTCAT-----TAAAATC------AGAATCGGAATCAGAATCAATA-----------------------TGG-G----------T----TAGGTGCACTCACTCTTCGCACAA---GCACACTC--------AC--------------------------------AGAATCAAACAAA------------AGAAA--TCTACACCA---------CCTTCATGGCACCATAACCATAGAGTTCTAG--TTC--------------------------------------TCT---CAAACGATCACT--AT-AATTGTTCTGTAAATAATC--CCAC----TTC-----AACTT-GCGATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAACGAGAAGTTGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTA.........................2113.0030000030000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATT.......................2312.0020101000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTG...........................1912.0020000020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAACGAGAAGT....1922.0040001030000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTTCGAGCAATTGTGTATT.......................2512.0020101000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGGCTTCGAGCAATTGTG...........................2312.0020000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGTATTAACTTCACCAACGAGA.......2712.0020002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTG...........................2012.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTTCGAGCAATTGTG...........................2112.0020100001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCAACGAGAAGTTGCA2121.5030000021000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATTAAC....................2611.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAATTGTGTATTAACT...................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGT..........................2011.0010000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTAT........................2011.0010000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATTAACT...................2711.0010001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCAACGAGAAGTTGC.2021.0020000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAATTGTGTATTAACTT..................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGGCTTCGAGCAATTGTGTATT.......................2711.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGGCTTCGAGCAATTGTGTA.........................2411.0010000010000
.............................................GT-TAGGAGGGAGGGTAAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAGCAATTGTGT..........................1911.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACTTCACCAACGAGAA......2021.0020110000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTGTA.........................2211.0010000010000
............................................AGT-TAGGAGGGAGGGTAAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTTCGAGCAATTGTGTAC........................2411.0010001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTAACTTCACCAACGAGAAGC....2911.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAGCAATTGTGTA.........................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTTCGAGCAATTG.............................1911.0010000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAACTTCACCAACGAGAAGTTGC.2620.5010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACTTCACCAACGAGAAGTTGC.2520.5010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCACCAACGAGAAGC....2020.5010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAACTTCACCAACGAGAAGT....2320.5010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACTTCACCAACGAGAAGTT...2520.5010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAACGAGAAGTT...2020.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCACCAACGAGAAGTTGCA2420.5010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAACGAGAAGT....2720.5010001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCACCAACGAGAAGTTG..2020.5010100000000
droPer2
---------GCCG-ACCTGCTAACA--CGTCTCTC-AACAG-TTAGT-TAGGAGGGAGGGTAAGGTCA----------TTC------A-AATCAGAATCAGAATCAATA-----------------------TGG-G----------T----TAGGTGCACTCACTCTTCGCACAA---GCACACTC--------AC--------------------------------AGAATCAAACAAA------------AGAAA--TCTACACCA---------CCTTCATGGCACCATAACCATTGAGTTCTAG--TTC--------------------------------------TCT---CAAACGATCACT--AT-AATTGTTCTGTAAATATTC--CCAC----TTC-----AACTT-GCGATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAACGAGAAGTTGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAATTGTGTATTAACT...................2414.004000004
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAATTGTGTATTA......................2113.003000012
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATTGTGTATTAACTT..................2013.003000003
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAATTGTGTATTAA.....................2212.002000002
..........................................TTAGT-TAGGAGGGAGGGTAAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATTA......................2211.001000001
.............................................GT-TAGGAGGGAGGGTAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGT............................1811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGGCTTCGAGCAATTGTGTA.........................2511.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATT.......................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATTGTGTATTAACT...................1911.001000001
.................................................AGGAGGGAGGGTAAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTGTATTA......................2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATTGTGTATTAACT...................1811.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTTCGAGCAATTGTG...........................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATT.......................2311.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTG...........................1911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATTGTGTATTAACTTCACCAA............2611.001000001
........................................G-TTAGT-TAGGAGGGAGGGTAAGGTCA----------TT..............................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACTTCACCAACGA.........1920.501100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAACGAGAAGT....1920.501000010
droAna3
TG------------------------------------------AAA-TA--GA------------------------ATC------AGAATCAGAACCAGAATCACTA-----------------------GGG--------------------GTGGAACATTTCTTCGCACTTC--GAACACTC--------AC--------------------------------AGATCCACACAA-------------GACACTC-----A------------------CAG--------CCG--------TAG--AAAGAAGTAATCCTTAGA------------CTCT------CCCTAGATATTAGATAACG--AG-TAT-AATCTGTAAATATTC--CTAA----A----------TCCGAAATGTAGTACAACGGCTTCGAACAACTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAACAACTGTGTATT.......................2115.005000005
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAACAACTGTGTAT........................1913.003000003
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAACAACTGTGTATTAACT...................2512.002000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGGCTTCGAACAACT..............................2012.002000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGTATTAACTTCACCAATGAGA.......2712.002100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAACAACTGTGT..........................2012.002000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAACAACTGTGTATTA......................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACTGTGTATTAACTTC.................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAACAACTGTGTATTAAC....................2611.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGTATTAACTTCACCAATGAG........2611.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACAACTGTGTATTAACT...................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAACAACTGTGTATT.......................2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGTATTAACTTCACCAATGAGA.......2611.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAACAACTGTGTATTA......................2211.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCAATGAGAAACTGC.1911.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGGCTTCGAACAACTGT............................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACAACTGTGTATTAACTT..................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGGCTTCGAACAAC...............................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAACAACTGTG...........................1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAGAA......2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGGCTTCGAACAACTGTGT..........................2311.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAACAACTGTGT..........................1811.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAACAACTGTGTATTAACT...................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAACAACTGTGTATTAA.....................2611.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGTATTAACTTCACCAATGAGAA......2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAACAACTGTGTAT........................2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCACCAATGAGAAAC....2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAACAACTGTGTATTAA.....................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAACAACTGTGTATTAACT...................2411.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAATGAGAAACTGCA2311.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACAACTGTGTATTAACTTCACCAAT...........2911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAATGAGAAACTGCA1911.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTACAACGGCTTCGAACA.................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAGA.......2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGGCTTCGAACAACTG.............................2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAACAACTGTGTATTAAC....................2511.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTTCGAACAACTGT............................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAACAACTGTGTATTAA.....................2411.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGTATTAACTTCACC..............1820.501010000
droBip1
C--------GCTG-ACCTGCTAACA--CGTCTCTC-ATCAGTTTAGTTTAGGGA------------CATTGAATTCAAATC------AGAAACAGAACCAGAATCACTC-----------------------GGG--------------------GTGCAACCTGTCTTCGCACTT---GAACACTC--------AC--------------------------------AGGGCCACACAA-------------GACACAC-----A------------------CAG--------CCG--------TAG--AAAGAAGAAACCCTTAGA------------CTTTTTTATCCCCTAGATATTAGATAACG--AG-TAT-AATCTGTAAATATTC--CTGA----A----------TCC-GAATGTAGTACAACGGCTTCGAACAACTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotal
No Reads
droKik1
---------GCTG-ACTTGCTAACA--CGTCTCTC-AACAGTTTAGC-TAGGCA------------------------TTC------------------AAAATCACTC-----------------------GGG-CTA---TCTACAAAG-GTGGTGCACCC-TTCTTCGCACCA---AAA-------------AC---AAAAAAAGAACAAACTCTC----------AGAAACACACAA-------------TATAC-------ACAGAAGCAACAG------TAGCA--------G--------TAG--A-----------CTTAGA-------TAACCC----------AC------TTTTATCGCT--AT-TTT-ATTGTGTAAATATTC--CCGA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAGCTGCASizeHit CountTotal NormTotal
No Reads
droFic1
ATCCACA--GCCG-ACCTGCTAACA--CGTCTTTC-AACAGTTTAGC-TAGGGC------------------------CTCAGATTGAGAATCAGAATCAAAATCACTG-----------------------GGG-GAACTGC----A----TTGGTGCAACCACTCTTCGCACTCA--AAACGCCC--------AC--A-----------------------------AAAACCACACAAA------------GATACAC---ACACTG---------------TAGCACAAT--CCG--------TAG--AAA--------TCTTAGATGCTGAACGGCTC-----------------------ACCTT--GT-TTT-AATATGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotal
No Reads
droEle1
ATTCACA--GCTG-ACCTGCTAACA--CGTCTCTT-AACAGTTTAGC-TAGGGA------------------------TTC------------------AGAATCACTC-----------------------GGG-GAACTATGT----ACATAGGTGCAACCTGTCTTCGCACTT---AAACGCTC--------AC--------------------------------AAAACCACACAAA------------GATAC-------ACAG---------------CAGCACTAT--CCG--------TAG--AAA--------------------------------------CCT---TAAACGATCACT--AT-TTT-ATTATGTAAATATTC--CCAA----C----------TCC--GATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotal
No Reads
droRho1
ATTCACA--GCTG-ACCTGCTAACA--CGTCTTTT-AACAGTTTAGC-TAGGGA------------------------TTC------------------AGAATCACTC-----------------------GGG-GAACTAC----A----TAGGTGCAACCTCTCTTCGCATTT---AAACGCCC--------AC--------------------------------AAAACCACACAAA------------TATAC-------ACTG---------------CAGCACCAT--CCT--------TAG--AAA--------CCTTAGAGGCTGAATAGCTC----------ACT---TAAACGATCACT--AT-TTT-ATTATGTAAATATAATTCCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotal
No Reads
droBia1
ATCTCCA--GCTG-ACCTGCTAACA--CGTCTTTT-AAA-GTTTAGC-TAGGGA------------------------CTC------AGAATCAGAATCAGAATCACTC-----------------------GGGGGACCTCC----A----TAGGTGCAACCTATCTTCGCACTT---GAACGCCC--------AC--A-----------------------------AAAACCACACAAA------------GATAC-------ACCT---------------TAGCACTAT--GCG--------TAG--ATA--------------------------------------CCT---TATATGATCTGCATAT-TTT-ACCGTGTAAATATTC--TTGAATAAC----------TCC-AAATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotal
No Reads
droTak1
ATCCCCA--GCTG-ACCTGCTAACA--CGTCTTTC-AACAGTTTAGC-TAGGGA------------------------CTC------------------AGAACCACTC-----------------------GGGGGAACTAC----A----TAGGTGCAACCTGTCTTCGCACTT---AA---------------------------------------------------ACCACACAAA------------GTTAC-------ACTG---------------TAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---TATATGAACCCC--AT-TTT-ATCGTGTAAATATTC--TTGAATAAC----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotal
No Reads
droEug1
ATTCCCA--GCTG-ACCTTCTAACA--CGTCTTTTTAACAGTTTAGC-TAGGGA------------------------TTC------A------GATTCAGAATCACTC-----------------------GGG-GAACCAT----A----TAGGTGCAACCTGTCTTCGCACAT---AAACGCCC--------ACC-T-----------------------------AAAACTACACAAA------------GTTAC-------ACTG---------------TAGCACTAT--CCG--------TAG--ATA--------T-----------------------------CCT---TAAACGATCACT--AT-TTT-ATTATGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotal
No Reads
dm3
ATCACCA--GTCG-ACCTGCTAACACACGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAACAT----ATGTAGGTGCAACCTATCTTCGCACTA---AAACGCCC--------AC--------------------------------CAAACAACACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAGAGTTA--------------------------------------CCT---TGATAGATCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATTAACT...................25119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAACGGCTTCGAGCA.................................1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACGGCTTCGAGCA.................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATT.......................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATTAAC....................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000020000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTAT........................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATTA......................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000020000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTAACTTCACCA.............2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTAT........................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTA.........................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGTATTAACTTCACCAATGAGA.......2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAATTGTGTATTA......................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGT..........................2013.0030000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGT..........................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAACGGCTTCGAGCAAT...............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGTATTAACTTCACCA.............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATTA......................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTAACTTCACCAATGAGA.......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................C-------ACTG---------------CAGCACTAT--CCG--------TAGAGTTA--------------------------------------.............................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATTAA.....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTAACTTCACCAATGAGA.......2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAGCAATTGTGTATTAACT...................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTTCGAGCAATTGTGTA.........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTAACTTCACCAATGAGAA......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATTGTGTATTAAC....................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTA.........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATTAACTTCACCA.............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATTAAC....................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTAACTTCACC..............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAATGAGAAACTGCA2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGT............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATTGTGTATTAACTT..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACGGCTTCGAGCAAT...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................A-TAGGGA------------------------TTC------AGACTCCG...............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGCAATTGTGTATT.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATTGTGTATTAACTTCAC...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGGCTTCGAGCAAT...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCAATGAGAAACTGCA2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACTTCACCAATGAGA.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATTGTGTATTAACTTCACC..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTGTATTAAC....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAATTGTGTATTAACTTCAC...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAACGGCTTCGAGCAATTGTGTATT.......................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGTGTATTAACTTCACCAA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTAACTTCACCAATGA.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTAACTTCACCAATGAGA.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................G-GAACAACAT----ATGTAGGT.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGGCTTCGAGCAATTGTGTATTAAC....................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCACCAATGAGAAAC....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGTGTATTAACTTCACC..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATTAACTTCACCAAT...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAGAAAC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAATTGTGTAT........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGTGTATTAACTTCACC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGTATTAACTTCACCAA............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTTCACCAATGAGA.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGGCTTCGAGCAATTGTGTA.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGGCTTCGAGCAATTG.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAATTGTGTATTAACTTCACCA.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTGTATTA......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAAT...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATTAACTTC.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCACCA--GTCG-ACCTGCTAACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAATGAGAAAC....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCAATGAGAAACTGC.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAGCAATTGTGTATTAA.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTATTAACTTCACC..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACCAATGAGAAACT...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAACGGCTTCGAGCAA................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAG........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCACCAATGAGAAACTGC.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTGT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CC--AATGTAGTACAACGGCTTCGAGCAAT...............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTGTA.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAGCAATTGTGT..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCA.............1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAGA.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTTCGAGCAATTGTGTATTA......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GATTTAGA-TAGGGA------------------------TTC------AGA....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCACCAATGAGAAACTGCA2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACTTCACCAATGAGA.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATCACCA--GCCG-ACCTGCTAACACATGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAACAT----ATTTAGGTGCAACCTATCTTCGCACTA---AAACGCCC--------AC--------------------------------CAAACCACACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---TAATAGATCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................A------------------------TTC------AGACTCCGATTCAGAATCACT..................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...............................................................................................................................................................AACCTATCTTCGCACTA---AAACGC.....................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..............................................................................................................................................................................................................................................CAAA------------GATAC-------ACTG---------------CAGCACTAT--C.....................................................................................................................................................................................2311.00100100000000000000
droSec2
ATCACCA--GTCG-ACCTGCTAAC-CACGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGATTCCGATTCAGAATCACTC-----------------------GGG-GAACAACAT----ATTTAGGTGCAACCTATCTTCGCACTA---AAACGCCC--------AC--------------------------------CAAACAACACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---CAATAGATCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACTTCACCAATGAGAAACT...2511.0010100
.................................TT-AAAGATTTAGA-TAGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
ATCCCCA--GCCG-ACCTGCTAACA--CGTCTCTT-AAAGATTTAGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAAA----A----TAGGTGCAACCTATCTTCGCACTG---AAACAC-C--------AC--------------------------------AAAACAATACAAA------------GATAC-------ACTG---------------CAGCACTAT--CCG--------TAG--TTA--------------------------------------CCT---TACTAGAGCACT--AT-TAT-AAATTGTAAATATTC--CCAA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTATTAACTTCACCAATGAGAA......2711.00101000000000
..............ACCTGCTAACA--CGTCTCTT-AAAGATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.....................................................A------------------------TTC------AGACTCCGATTCAGAATCACT..................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTAACTTCACCAATGAG........2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAATTGTGTATTAACT...................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGCAATTGTGTATTAAC....................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTTCGAGCAATTGTGTATTAA.....................2611.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCTTCGAGCAATTGTGTATTAAC....................2611.00100000010000
droEre2
---------GCCG-ACCTGCTAACA--CGTCTCTT-AAAGATTTGGA-TAGGGA------------------------TTC------AGACTCCGATTCAGAATCACTC-----------------------GGG-GAACAAC----G----TAGGTGCAACCTATCTTCGCACTG---AAACGCCC--------AC--------------------------------AAAACCACACAAA------------GATAC-------ACTG---------------CAGCACCAT--TCC--------TAG--TTA--------------------------------------CCT---CAATAGATCACT--AT-T-T-AAATTGTAAATATTC--CCCA----C----------TCC--AATGTAGTACAACGGCTTCGAGCAATTGTGTATTAACTTCACCAATGAGAAACTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................CAAA------------GATAC-------ACTG---------------CAGCACC..........................................................................................................................................................................................2011.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................TC--CCCA----C----------TCC--AATGTAGTACAACGGCT........................................2711.0011000000
...............................TCTT-AAAGATTTGGA-TAGGGA------------------------TTC------AGAC...................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................C--CCCA----C----------TCC--AATGTAGTACAACGGC.........................................2511.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCGAGCAATTGTGTATTAACT...................2511.0010000100

Generated: 05/16/2015 at 09:12 PM