dvi_1113

Name	Class	Family	Strand
Helitron-2N1_DVir	RC	Helitron	-
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGCGCAACACATGGTTTAATCTTTTTGCCTGTTCTGCTTAGTTATATTGGTAAGTAATGGTTTTATATTATAATTTTAGTATATATTAGCATATTCGATATAAACTTGATCTTTGTATATCCATGTGGATTTTCTCCGACCCCAGAATATATATATTCCATCAATGTCGACCTACGAGTTGATTAAGCTAAGTATGTCCGTATTTGTTCGTCTGTTTCTATGTAAACTTTTCTCTCAGTTTTAAAACTAT ***************************************************************************************************((..((((....(((.((((....(((((...........................)))))..)))))))....)))).))*******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	SRR060676 9xArg_ovaries_total	SRR060679 140x9_testes_total	SRR060681 Argx9_testes_total	SRR060674 9x140_ovaries_total	M047 female body	SRR060678 9x140_testes_total	SRR060677 Argx9_ovaries_total	SRR060680 9xArg_testes_total	SRR060683 160_testes_total	SRR060689 160x9_testes_total	V116 male body	SRR060673 9_ovaries_total	SRR060684 140x9_0-2h_embryos_total
.................TAATCTTTTTGCCTGTTCTGCTTAGT................................................................................................................................................................................................................	26	0	1	6.00	6	0	0	0	1	1	1	3	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAATCTTT..................................................................................................................................................................................................................................	25	0	1	5.00	5	0	0	1	3	1	0	0	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAATCTTTTT................................................................................................................................................................................................................................	27	0	1	2.00	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0
............TGGTTTAATCTTTTTGCCTGTTCTGC.....................................................................................................................................................................................................................	26	0	1	2.00	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................TGTTCTGCTTAGTTATATTGG........................................................................................................................................................................................................	21	0	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0
..........CATGGTTTAATCTTTTTGCCTGTTCTGC.....................................................................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAATCTT...................................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ATTAAGCTAAGTGTGTCCGTA................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................CTTTTTGCCTGTTCTGCTT...................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TATGTCCGTATTTGTTCGTCTGTTTC................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAATCTTTT.................................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................TGCCTGTTCTGCTTAGTTATATTGG........................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................TGCCTGTTCTGCTTAGTTATATTGGT.......................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................TAATCTTTTTGCCTGTTCTGCTTAGTTA..............................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TATTCGATATAAACTTGATCTATGTATA...................................................................................................................................	28	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................CTGTTCTGCTTAGTTATATTGGTGCG....................................................................................................................................................................................................	26	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
TGGCGCAACACATGGTTTAAT......................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............TGGTTTAATCTTTTTGCCTGTTCTGCT....................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........CATGGTTTAATCTTTTTGCATGTTCTGC.....................................................................................................................................................................................................................	28	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGCGCAACACATGGTTTAATCTTTT.................................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TAAACTTGATCTTTGTATATCCATGT............................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................TTTTGCCTGTTCTGCTTAGTTATAT...........................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................TTCCATCAATGTCGACCTACGAGTTG.....................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............TTTAATCTTTTTGCCTGTTCTGCTTAGT................................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AAGCTATGTCCGTATTTGTTCGTCTGTT..................................	28	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGGTTTAATCTTTGTGCCTGTTCTGC.....................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CTTTTTGCCTGTTGTGCTT...................................................................................................................................................................................................................	19	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTGCTTAGTTATATTGGTGTC....................................................................................................................................................................................................	22	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................TGTAAAGTTTACTCTCCGT...........	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................TAATCGTTTTTTATTATAA.................................................................................................................................................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1

ACCGCGTTGTGTACCAAATTAGAAAAACGGACAAGACGAATCAATATAACCATTCATTACCAAAATATAATATTAAAATCATATATAATCGTATAAGCTATATTTGAACTAGAAACATATAGGTACACCTAAAAGAGGCTGGGGTCTTATATATATAAGGTAGTTACAGCTGGATGCTCAACTAATTCGATTCATACAGGCATAAACAAGCAGACAAAGATACATTTGAAAAGAGAGTCAAAATTTTGATA *******************************************************************((..((((....(((.((((....(((((...........................)))))..)))))))....)))).))***************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M028 head	SRR060683 160_testes_total	SRR060665 9_females_carcasses_total	SRR060675 140x9_ovaries_total	SRR060672 9x160_females_carcasses_total	SRR1106729 mixed whole adult body
..................................................................................................................................................................................................TCCAGGCACAAACTAGCAG......................................	19	3	7	0.14	1	1	0	0	0	0	0
.......TGCGTACCGAATTAGAAAA.................................................................................................................................................................................................................................	19	2	8	0.13	1	0	1	0	0	0	0
.....................................................TCACTACCAAAGTATAATGTT.................................................................................................................................................................................	21	3	13	0.08	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................GAAACGAGAGTCAAAATG......	18	2	18	0.06	1	0	0	0	1	0	0
.......................................................................................................................TAGGTACGCCTAAAA.....................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1
............................................................................................................................ACACCTAAAAGTGCCCGGG............................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12723:240679-240929 -	dvi_1113	TGGCGCAACACATGGTTTAATCTTTTTGCCTGTTCTGCTTAGTTATATTGGTAAGTAATGGT-----------------------------------------------------------------------------------------TTT-ATATTATA---ATTTTAGTAT--AT---------------------------------------------A--TTAGCATATTCGATATAAACTTGATCTTTGTATATCC--ATGTGG-ATTTTCTCCGAC-CCCAGA--ATATAT-----ATATTC--CATCAATGTCGACCTACGAGTTGATTAAGCTAAGTATGTC----CGTA------TTTGTTCGTCTGTTTCTATGTAAACTTTTCTCTCAGTTTTAAAAC-TAT
droMoj3	scaffold_6500:30519767-30519841 +		CGGCGCAACACATGGTTTAATATTTTTACCAGTTTTGCTTAGTTATATTGGTAAGTACATATATTATTT----------------------------------------------------------------------------------TTA-ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_1445:599-706 -		AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-----ATATTC-TGATCACCATCACTAGCCGAGTTGATATGGACACATCTGAC----TGTTCTTG----CCTCCGTCTGTTTCTATGCAAACTAATCTCTCAGTTTTTAAAC-TAT
droWil2	scf2_1100000004967:3675886-3676040 +		TGGTGCAGCACATGGACTCATCTTTCTGCCTGTTCTTCTGAGTTATATTGGTAAGTAAACAAAACAATTAAATTCATTTCTTAAATTTTAATA----------------------------------------------------------------------AAAATCTTCGCAT--TT---------------------------------------------A--AATGCATTTT-------------------------------------------------------AAAAATAA-----ATATTTT---------------------TCGATCTAGTCATG-------------------------------------------------------------TGAA-TTT
dp5	Unknown_group_199:16305-16560 +		ATC-----------GTTTCATTT--TTGT---------TGT-------------------------------------------------------------------------------------------------------GTGTGCTTAA--TGC--------GAATTGTGT----GTGTTCTTTTTATACCCGATACTCAAAATGAGTATT----GGGGTATATAAGATTTGT-GGTAAAAG-TGGATGTGTGTAACGTC-CAGAAGGAATCGTTTCCGAC-CCCATAAAGTATAT-----ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCTAAGTCTGTC----TGTCCGTC----TGTCCGTCCCCTTCAACGCCTAGTGCTCAAAGACTATAAGAGC-TAG
droPer2	scaffold_163:7746-7831 +		TGGAGCAGCTCATGGTCTTATCTTCTTGCCGGTTTTATTGAGCTATATCGGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT----GTTTAAGCAATTTCGAAATATGTTA----------------------
droAna3	scaffold_13055:110171-110420 -		CGG-GCGACATTAAGTTTGTTTTCCTTAT-ATTTTTTTTTTGTATTATTA---------------------------------------------------------------------------------------------------------------------TAATTATGTTT--TTGTATTTTTTATTCTCT-----------------TGCAGAGGGTGTT--ATAATTTT-GGT------CAAAAGTGTGCAACGCA-GTGAAGGAGACATCTCCGAC-CCTATA-AGTATAT-----ATATTGTTGATCAGGATCAC---CTGAGTCGATATGAGCATGTCCGTC----TGTCCGTC----TGTCTATCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGA-TAT
droBip1	scf7180000396356:6630-6894 +		TTTA---------------ATTTTTTTGTTTGTTTTTT---GTTT-----------------------------------------------------------------------------------------TAATTTTTGTGTATGGTTTT--TGTTTTA---ATTTTG--GTGTA-----TTTTTTTATACCCT-----------------TTCAGAGGGTATT--TCAATTTT-GTC------CAAAAGTGTGCAACGCA-GTGAAGGAGACATTTCCGAC-CCTATAAAGTATATATAATATATTCTTGATGAGGAAAACCTCCATAGTTGATATAAGCATATCCGTC----TGTCCGTCGGTCCGTCTGTCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGC-TAT
droKik1	scf7180000302659:27352-27605 +		CAACAAATT-----TTTTGATATTTTTGT--------------TT-----------------------------------------------------------------------------------------TA--------TTATGCTTAAA-TT---A-----TAATAAAGCAA--ACATTTTCATTATACCCT-----------------TGC--AGGGTATT--ATAATTTC-AGT------CAGAAGTTTGCACCGCA-GTGAAGGAGACATTTCCGAC-CCTATAAAGTATAT-----ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCCGTCTGTCCGTCCTTCCGTCTGTCCGTTTCTACGCAAACTTGTCCCTCAGTTTAAAAGC-TTT
droFic1	scf7180000449556:9213-9432 +		ATAAT---------------TATAAATGA---------------------------------AACTTTTGGAATAATAAC--AGAATATAATAGAGATTCATAC----------------------------------------------------------------------------------------------------------------------------------------ATATAAA-CAAATATGTATAAATTTTTATGTGCAATTTTTAACGATTTATATATAATATAT-----ATATTCTTGATCAGCATCACAATCTGAATCAAAATATGAATGTACGCC----TGTCCGTCTGTTCGTCTGTCTGTTTCTATGTAAACTAGTCTCTAAGTTTTGAAGC-TAT
droEle1	scf7180000488119:715-947 -		TAGCGCAACACCTACCGAA---------------------------------------------------------------AAAATATATTTGTATTTTATACATATATATTTTATATTTTATATTTATATTTTA--------TATTTTATATT-TT---A-----TATT---------T---------TATATTT------------------TAT-----ATTTT--ATATTT--------------------------------------TATATTTTATAT-TTTATATTTTATAT-----ATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCTATGTCCGTC----TG------------TCCGTCCGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGC-TAT
droRho1	scf7180000774786:21-232 -		TGGTGCAAT--ATTGTTTAATTCTGTTACATTTTCTGTTTCTTAGTATTGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGTATT--ATAATTTT-GGT------CAAAAGTGTGCAACGCA-GTGAAGGAGACATCTCCGAC-CCTATAAAGTATAT-----ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAAGCATGTCC--------------------GTCTGTCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGA-TAT
droBia1	scf7180000302178:38016-38249 -		CAGAAAGA------GTTTTTATTTCTTAA-A------------------------------------------------------ATATTTTG----------------------------------------------------------------------AAATTAATAACGAAT--TAATCCTTATTATACCTT-----------------TGCAGAGGGTATA--ATAATTTC-AGT------CAGATGTTTGCAACGCA-GTGAAGGAGACGTTTCCGAC-CACATAAAGTATAT-----ATATTCTTGATCAGCGTCACTAGACGAGTCGATCTAGTCATGTCTGTC----T------------TTCTGTCCGTTTCTAAGCAAACTAGTCTCTCAGTTTTAAAGC-TAT
droTak1	scf7180000415995:61410-61632 -		GTACAAGAC--ATGTTTTATTTTTTTTAC-ATTTATTTTTAGTTCAATTAT--------------------------------------------------------------------------------------------------------------------------TGTTT--T---TATTTTTATACCCT-----------------TGTAGAGGGTATT--ATAATTTC-AGT------CAGATGTTTGCAACGCA-GTGAAGGAGACGTTTCCGAC-CACATAAAGTATAT-----ATATTCTTGATCAGCACCAATAGCCGAGTC----------------------TGTC--------CGTCTGTCCGTTTCTATGCGAACTAGTCTCTCAGTTTTAAAGC-TAT
droEug1	scf7180000409554:4710223-4710280 +		TGGGGCGGCTCACGGCCTAATCTTTCTCCCGGTTCTATTAAGTTATATTGGTGAGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2L:10214113-10214174 -		TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTGAAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:9891804-9891864 -		TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTAGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_3:5639112-5639195 -		TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTAGAGAAATGGCTC----------------------------------------------------------------------------------CTG-ATA----------------------------------------------------------------------------------------------------------------------------------ACATAA------------------------------------------------------------------------------------------------------------------------CTT
droYak3	X:21749357-21749460 -		AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----ATATTATTGATCAATATCAACAGACAAGTCGATATGTCCATGTCTGTT----TGCC--------CGTCCGTCTGTTTCTATGCAAACTAGTCTCTCAGTTTTAAGGCTGTA
droEre2	scaffold_4929:10820192-10820253 -		TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTAGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TGGCGCAACACATGGTTTAATCTTTTTGCCTGTTCTGCTTAGTTATATTGGTAAGTAATGGT-----------------------------------------------------------------------------------------TTT-ATATTATA---ATTTTAGTAT--AT---------------------------------------------A--TTAGCATATTCGATATAAACTTGATCTTTGTATATCC--ATGTGG-ATTTTCTCCGAC-CCCAGA--ATATAT-----ATATTC--CATCAATGTCGACCTACGAGTTGATTAAGCTAAGTATGTC----CGTA------TTTGTTCGTCTGTTTCTATGTAAACTTTTCTCTCAGTTTTAAAAC-TAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................TAATCTTTTTGCCTGTTCTGCTTAGT......................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAATCTTT........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAATCTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGGTTTAATCTTTTTGCCTGTTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................TGTTCTGCTTAGTTATATTGG..............................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CATGGTTTAATCTTTTTGCCTGTTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
TGGCGCAACACATGGTTTAATCTT.........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CTTTTTGCCTGTTCTGCTT.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................TATGTC----CGTA------TTTGTTCGTCTGTTTC.................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAATCTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCCTGTTCTGCTTAGTTATATTGG..............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCCTGTTCTGCTTAGTTATATTGGT.............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TAATCTTTTTGCCTGTTCTGCTTAGTTA....................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGCGCAACACATGGTTTAAT............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGGTTTAATCTTTTTGCCTGTTCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGCGCAACACATGGTTTAATCTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TAAACTTGATCTTTGTATATCC--ATGT..................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTTTGCCTGTTCTGCTTAGTTATAT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTC--CATCAATGTCGACCTACGAGTTG................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTTAATCTTTTTGCCTGTTCTGCTTAGT......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCTGCTTAGTTATATTGGTGTC..........................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGGCGCAACACATGGTTTAATATTTTTACCAGTTTTGCTTAGTTATATTGGTAAGTACATATATTATTT----------------------------------------------------------------------------------TTA-ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......AACACATGGTTTAATATTTTTACC...................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....GCAACACATGGTTTAATATTT........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-----ATATTC-TGATCACCATCACTAGCCGAGTTGATATGGACACATCTGAC----TGTTCTTG----CCTCCGTCTGTTTCTATGCAAACTAATCTCTCAGTTTTTAAAC-TAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TGGTGCAGCACATGGACTCATCTTTCTGCCTGTTCTTCTGAGTTATATTGGTAAGTAAACAAAACAATTAAATTCATTTCTTAAATTTTAATA----------------------------------------------------------------------AAAATCTTCGCAT--TT---------------------------------------------A--AATGCATTTT-------------------------------------------------------AAAAATAA-----ATATTTT---------------------TCGATCTAGTCATG-------------------------------------------------------------TGAA-TTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...TGCAGCACATGGACTCATCTTTCTGCC...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	5	0	0	0
..........CATGGACTCATCTTTCTGC....................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0
..........................TGCCTGTTCTTCTGAGTTATATTGG..............................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	2	0	1	0
.......................TTCTGCCTGTTCTTCTGAGTTATATTGG..............................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0
..........................TGCCTGTTCTTCTGAGTTATATTGA..............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..........CATGGACTCATCTTTCTGCC...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
........................TCTGCCTGTTCTTCTGAGTTATATTGG..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.....................CTTTCTGCCTGTTCTTCTGAGTTAT...................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................ATCTTTCTGCCTGTTCTTCTGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................TCATCTTTCTGCCTGTTCTTCTGAGTTA....................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
..........................TGCCTGTTCTTCTGAGTTATATTGGTGCC..........................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
.......................TTCTGCCTGTTCTTCTGAGT......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0

dp5

ATC-----------GTTTCATTT--TTGT---------TGT-------------------------------------------------------------------------------------------------------GTGTGCTTAA--TGC--------GAATTGTGT----GTGTTCTTTTTATACCCGATACTCAAAATGAGTATT----GGGGTATATAAGATTTGT-GGTAAAAG-TGGATGTGTGTAACGTC-CAGAAGGAATCGTTTCCGAC-CCCATAAAGTATAT-----ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCTAAGTCTGTC----TGTCCGTC----TGTCCGTCCCCTTCAACGCCTAGTGCTCAAAGACTATAAGAGC-TAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCTAAGTCTGTC----...........................................................	21	1	10.00	10	0	10	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGT-GGTAAAAG-TGGATGTGTG...............................................................................................................................................................	21	20	4.65	93	0	93	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCTAAGTCTG.................................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TTTGT-GGTAAAAG-TGGATGTGTGTA.............................................................................................................................................................	25	20	3.15	63	0	0	0	0	0	0	0	0	63	0
............................................................................................................................................................................................................................................................................................................................................AGTCGATTGAGCTAAGTCTGT................................................................	21	1	3.00	3	0	2	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................AGTCGATTGAGCTAAGTCTG.................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GATTGAGCTAAGTCTGTC----TGT........................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0
.........................................................................................................................................................................................................................................TTTGT-GGTAAAAG-TGGATGTGTGTAA............................................................................................................................................................	26	20	1.65	33	0	0	0	0	0	0	0	0	33	0
...............................................................................................................................................................................................................................................................................................................................................CGATTGAGCTAAGTCTGTC----TG.........................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCTAAGTCTG.................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCTAAGTCTGT................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GATTGAGCTAAGTCTGTC----TG.........................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TAAGTCTGTC----TGTCCGTC----TGT............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTGAGCTAAGTCTGTC----TGTCCG.....................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATTGAGCTAAGTCTGTC----TGTT.......................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCTAAGTCT..................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CGATTGAGCTAAGTCTGTC----TGA........................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TAAGTCTGTC----TGTCCGTC----TG.............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TC----TGTCCGTC----TGTCCGTCCC.....................................	20	20	0.75	15	0	15	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGAC-C.................................................................................................................................	19	20	0.75	15	0	15	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CTCAAAATGAGTATT----GGGGTATATA...........................................................................................................................................................................................	25	6	0.67	4	0	0	0	0	0	0	0	4	0	0
...............................................................................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATT.............................................................................	21	20	0.65	13	0	13	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GTCCGTC----TGTCCGTCCCCTTCAA...............................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AAGTCTGTC----TGTCCGTC----TGT............................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................AAGATTTGT-GGTAAAAG-TGGA.....................................................................................................................................................................	21	4	0.50	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TATAAGATTTGT-GGTAAAAG-T........................................................................................................................................................................	21	4	0.50	2	0	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................TCAAAATGAGTATT----GGGGTATATA...........................................................................................................................................................................................	24	7	0.43	3	0	1	0	0	0	0	0	2	0	0
...................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATA.........................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AATCGTTTCCGAC-CCCATAA...........................................................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GTAACGTC-CAGAAGGAATCG...........................................................................................................................................	20	20	0.25	5	0	0	0	0	0	0	5	0	0	0
....................................................................................................................................................................................................................................TAAGATTTGT-GGTAAAAG-TGGA.....................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................ATGAGTATT----GGGGTATATAAGA........................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................TAAGATTTGT-GGTAAAAG-TGGAT....................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTGT-GGTAAAAG-TGGATGTGTGTA.............................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	5	0
..........................................................................................................................................................................................................................................................................................................................................................AGTCTGTC----TGTCCGTC----TGTC...........................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TCAAAATGAGTATT----GGGGTATATAA..........................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TAAGATTTGT-GGTAAAAG-TG.......................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................ATAAGATTTGT-GGTAAAAG-.........................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................CTGTC----TGTCCGTC----TGTCCGT........................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................T----GGGGTATATAAGATTTGT-GG................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TT----GGGGTATATAAGATTTGT-G.................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCTGTC----TGTCCGTC----TGTCC..........................................	19	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GATGTGTGTAACGTC-CAGAAGGAAT.............................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	3
.....................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCTCAAAGACTATAAGAGC-...	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0
................................................................................................................................................................................................................................................................................................................................................................TC----TGTCCGTC----TGTCCGTCCCCTTCA................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GAATCGTTTCCGAC-CCCATAAAGTA.......................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0
................................................................................................................................................................................................................................................GTAAAAG-TGGATGTGTGTA.............................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	3	0	0
................................................................................................................................................................................................................................................GTAAAAG-TGGATGTGTGTAA............................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	3	0	0	0
...................................................................................................................................................................................................................................................................AACGTC-CAGAAGGAATCGTTTCCGAC-..................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCC......................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.........................................................................................................................................................................................................CTCAAAATGAGTATT----GGG..................................................................................................................................................................................................	18	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTCCCCTTCAACGCCTAGTGC.....................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CCTTCAACGCCTAGTGCTCAA.................	21	7	0.14	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTCAACGCCTAGTGCTCAAAG...............	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTCCCCTTCAACGCCTAGTGCT....................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TCCCCTTCAACGCCTAGTGCT....................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TCCCCTTCAACGCCTAGTGCTC...................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CAACGCCTAGTGCTCAAAGACTA...........	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CAACGCCTAGTGCTCAAAG...............	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TGC--------GAATTGTGT----GTGTTCT......................................................................................................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TCAACGCCTAGTGCTCAAAGA..............	21	8	0.13	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TC----TGTCCGTCCCCTTCAACGCC...........................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAG...................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................ATGTGTGTAACGTC-CAGAA..................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................GTAACGTC-CAGAAGGAATCGTTTCCGAC-..................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TC----TGTCCGTC----TGTCCGTCCCCT...................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................TAACGTC-CAGAAGGAATCGTTTCC......................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATCGTTTCCGAC-CCCATAAA..........................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGTC----TGTCCGTC----TGTCCGTC.......................................	20	20	0.10	2	0	0	0	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................CGTC-CAGAAGGAATCGTTTCC......................................................................................................................................	21	20	0.10	2	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCCCTTCAACGCCT..........................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................T-GGTAAAAG-TGGATGTGTG...............................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................................................................................................................T-----ATATTCTTGATCAGCATCAATAGCCG.....................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.................................................................................................................................................................................................................................................TAAAAG-TGGATGTGTGTAACGT.........................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................TC----TGTCCGTCCCCTTCAAA..............................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TATACCCGATACTCAAAATGAGTA...........................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTCCGAC-CCCATAAAGTA.......................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TGTC----TGTCCGTC----TGTCCGTCCC.....................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................GATGTGTGTAACGTC-CAGAA..................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................AAG-TGGATGTGTGTAACGTC-C......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTC----TGTCCGTC----TGTCCGTC.......................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................TTTGT-GGTAAAAG-TGGAT....................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................AGATTTGT-GGTAAAAG-TGG......................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................GTAAAAG-TGGATGTGTGTAACGT.........................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGC.........................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TTTGT-GGTAAAAG-TGGATGTGTC...............................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................GTAACGTC-CAGAAGGAATCGTTTCC......................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTCTGTC----TGTCCGTC----TGTCCG.........................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGT-GGTAAAAG-TGGATGTGTGTA.............................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................TCAAAATGAGTATT----GGGGTATAT............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

TGGAGCAGCTCATGGTCTTATCTTCTTGCCGGTTTTATTGAGCTATATCGGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT----GTTTAAGCAATTTCGAAATATGTTA----------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

CGG-GCGACATTAAGTTTGTTTTCCTTAT-ATTTTTTTTTTGTATTATTA---------------------------------------------------------------------------------------------------------------------TAATTATGTTT--TTGTATTTTTTATTCTCT-----------------TGCAGAGGGTGTT--ATAATTTT-GGT------CAAAAGTGTGCAACGCA-GTGAAGGAGACATCTCCGAC-CCTATA-AGTATAT-----ATATTGTTGATCAGGATCAC---CTGAGTCGATATGAGCATGTCCGTC----TGTCCGTC----TGTCTATCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGA-TAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................................................................ACGCA-GTGAAGGAGACATCTCCG.....................................................................................................................................	23	20	0.75	15	0	0	15	0	0	0
...........................................................................................................................................................................................................................................TTT-GGT------CAAAAGTGTGCAACG..........................................................................................................................................................	21	20	0.45	9	9	0	0	0	0	0
.........................................................................................................................................................................................................................................ATTTT-GGT------CAAAAGTGTGCAACG..........................................................................................................................................................	23	20	0.25	5	0	5	0	0	0	0
................................................................................................................................................................................................................................TGTT--ATAATTTT-GGT------CAAAAGTGTGC..............................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................AGACATCTCCGAC-CCTATA-AGT........................................................................................................................	22	7	0.14	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATGAGCATGTCCGTC----TGTCCGTC----TG.............................................	25	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CGTC----TGTCCGTC----TGTCTAT........................................	19	13	0.08	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TAGTCTCTCAGTTTTAAAGA-T..	21	14	0.07	1	0	0	0	0	1	0
................................................................................................................................................................................................................................TGTT--ATAATTTT-GGT------CAAAAGTGTGCAAC...........................................................................................................................................................	29	19	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATATGAGCATGTCCGTC----TGTCCG.....................................................	23	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................TGCAGAGGGTGTT--ATAATTTT-GGT------CAA......................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TGTT--ATAATTTT-GGT------CAAAAGTGTGCC.............................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GATATGAGCATGTCCGTC----TG.........................................................	20	20	0.05	1	0	0	0	1	0	0

droBip1

TTTA---------------ATTTTTTTGTTTGTTTTTT---GTTT-----------------------------------------------------------------------------------------TAATTTTTGTGTATGGTTTT--TGTTTTA---ATTTTG--GTGTA-----TTTTTTTATACCCT-----------------TTCAGAGGGTATT--TCAATTTT-GTC------CAAAAGTGTGCAACGCA-GTGAAGGAGACATTTCCGAC-CCTATAAAGTATATATAATATATTCTTGATGAGGAAAACCTCCATAGTTGATATAAGCATATCCGTC----TGTCCGTCGGTCCGTCTGTCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGC-TAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAACAAATT-----TTTTGATATTTTTGT--------------TT-----------------------------------------------------------------------------------------TA--------TTATGCTTAAA-TT---A-----TAATAAAGCAA--ACATTTTCATTATACCCT-----------------TGC--AGGGTATT--ATAATTTC-AGT------CAGAAGTTTGCACCGCA-GTGAAGGAGACATTTCCGAC-CCTATAAAGTATAT-----ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCCGTCTGTCCGTCCTTCCGTCTGTCCGTTTCTACGCAAACTTGTCCCTCAGTTTAAAAGC-TTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATAAT---------------TATAAATGA---------------------------------AACTTTTGGAATAATAAC--AGAATATAATAGAGATTCATAC----------------------------------------------------------------------------------------------------------------------------------------ATATAAA-CAAATATGTATAAATTTTTATGTGCAATTTTTAACGATTTATATATAATATAT-----ATATTCTTGATCAGCATCACAATCTGAATCAAAATATGAATGTACGCC----TGTCCGTCTGTTCGTCTGTCTGTTTCTATGTAAACTAGTCTCTAAGTTTTGAAGC-TAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAGCGCAACACCTACCGAA---------------------------------------------------------------AAAATATATTTGTATTTTATACATATATATTTTATATTTTATATTTATATTTTA--------TATTTTATATT-TT---A-----TATT---------T---------TATATTT------------------TAT-----ATTTT--ATATTT--------------------------------------TATATTTTATAT-TTTATATTTTATAT-----ATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCTATGTCCGTC----TG------------TCCGTCCGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGC-TAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGGTGCAAT--ATTGTTTAATTCTGTTACATTTTCTGTTTCTTAGTATTGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGGTATT--ATAATTTT-GGT------CAAAAGTGTGCAACGCA-GTGAAGGAGACATCTCCGAC-CCTATAAAGTATAT-----ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAAGCATGTCC--------------------GTCTGTCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGA-TAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGAAAGA------GTTTTTATTTCTTAA-A------------------------------------------------------ATATTTTG----------------------------------------------------------------------AAATTAATAACGAAT--TAATCCTTATTATACCTT-----------------TGCAGAGGGTATA--ATAATTTC-AGT------CAGATGTTTGCAACGCA-GTGAAGGAGACGTTTCCGAC-CACATAAAGTATAT-----ATATTCTTGATCAGCGTCACTAGACGAGTCGATCTAGTCATGTCTGTC----T------------TTCTGTCCGTTTCTAAGCAAACTAGTCTCTCAGTTTTAAAGC-TAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTACAAGAC--ATGTTTTATTTTTTTTAC-ATTTATTTTTAGTTCAATTAT--------------------------------------------------------------------------------------------------------------------------TGTTT--T---TATTTTTATACCCT-----------------TGTAGAGGGTATT--ATAATTTC-AGT------CAGATGTTTGCAACGCA-GTGAAGGAGACGTTTCCGAC-CACATAAAGTATAT-----ATATTCTTGATCAGCACCAATAGCCGAGTC----------------------TGTC--------CGTCTGTCCGTTTCTATGCGAACTAGTCTCTCAGTTTTAAAGC-TAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGGGGCGGCTCACGGCCTAATCTTTCTCCCGGTTCTATTAAGTTATATTGGTGAGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTGAAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................TGATCTTTCTGCCCGTTCTATTAAGT......................................................................................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTGATCTTTCTGCCCGTTCTATTAAGT......................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTTCTGCCCGTTCTATTAAGTTATA..................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGGGCGGCGCACGGGTTGATCTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
.....CGGCGCACGGGTTGATCTTTCTGC....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTTCTGCCCGTTCTATTAAGTTATAT.................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCTTTCTGCCCGTTCTATTAAGTTATA..................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCTGCCCGTTCTATTAAGTTATATTGGG.............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...GGCGGCGCACGGGTTGATCTTTCTGCC...................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GGCGCACGGGTTGATCTTTCTGCC...................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGGGCGGCGCACGGGTTGATCTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................TTCTGCCCGTTCTATTAAGTTATA..................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGATCTTTCTGCCCGTTCTAT...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCCCGTTCTATTAAGTTATATTGGGTC...........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCCCGTTCTATTAAGTTATATTTTG.............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TATATTGGTGAGTGAAGA....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCTTTCTGCCCGTTCTATTAAGTTAT...................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTGATCTTTCTGCCCGTTC..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTCTGCCCGTTCTATTAAGTTATATTGG..............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTCTGCCCGTTCTATTAAGTTATAT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCTTTCTGCCCGTTCTATTAAGT......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGCACGGGTTGATCTTTGA......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGATCTTTCTGCCCGTTC..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TATTAAGTTATATTGGTGCTC.........................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGCACGGGTTGATCTTCGA......................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTAGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................TTTCTGCCCGTTCTATTAAGTTATA..................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
............CGGGTTGATCTTTCTGCC...................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTCTGCCCGTTCTATTAAGTTATA..................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................CTTTCTGCCCGTTCTATTAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................TTCTGCCCGTTCTAT...........................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................GTTCTATTAAGTTATATT................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....CGGCGCACGGGTTGATCTTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................TCTGCCCGTTCTATTAAGTTATATTGG..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTAGAGAAATGGCTC----------------------------------------------------------------------------------CTG-ATA----------------------------------------------------------------------------------------------------------------------------------ACATAA------------------------------------------------------------------------------------------------------------------------CTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................TCTGCCCGTTCTATTAAGTTATATTGGG.............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
..............................CGTTCTATTAAGTTATATTGGG.............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
........................................AGTTATATTGGTGAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0

droYak3

AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----ATATTATTGATCAATATCAACAGACAAGTCGATATGTCCATGTCTGTT----TGCC--------CGTCCGTCTGTTTCTATGCAAACTAGTCTCTCAGTTTTAAGGCTGTA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TGGGGCGGCGCACGGGTTGATCTTTCTGCCCGTTCTATTAAGTTATATTGGTGAGTAGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................ATCTTTCTGCCCGTTCTATT..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................TGATCTTTCTGCCCGTTCTAT...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
TGGGGCGGCGCACGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

dvi_1113

scaffold_12723:240729-240879 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-9.9	-9.2	-9.0