ID:

dvi_111

 Coordinate:

scaffold_13049:14475546-14475607 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.4 -27.4 -27.4

Flybase annnotation

intron [Dvir\GJ11786-in]

No Repeatable elements found

Sense Strand Reads

AAACTCTCTTTAAATGTGGCAGGCAGTTGAGTTTATCTGTGTTGGGTGTCCTGAAGTACGCAAGTTGATTAGCATGATTAAAATTTTCCTAATTATTTGCGAACTCAAAGAAACACGACACAGCCACAAAACATTTTGTGTCGGGAAAAAGTGCTTGCAGCA

***********************************.((((((((.((.((.(((.((.(((((((.((((((...(((....)))...))))))))))))).)))))..)).)).))))))))..************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060681

Argx9_testes_total

 SRR060679

140x9_testes_total

 SRR060678

9x140_testes_total

 SRR060680

 9xArg_testes_total

 SRR060672

9x160_females_carcasses_total

 SRR060664

9_males_carcasses_total

 SRR060659

Argentina_testes_total

 SRR060689

160x9_testes_total

 SRR060670

9_testes_total

 SRR060665

9_females_carcasses_total

 SRR060683

160_testes_total

 SRR060667

160_females_carcasses_total

 SRR060668

160x9_males_carcasses_total

 SRR060671

9x160_males_carcasses_total

 SRR2096059

Ovary_Min_164		 SRR060669

160x9_females_carcasses_total

 SRR2096056

Ovary_Min_46		 SRR060676

9xArg_ovaries_total

 SRR060655

9x160_testes_total

 SRR060666

160_males_carcasses_total

 SRR060677

Argx9_ovaries_total

 SRR2096060

Ovary_Min_193		 SRR2096055

Ovary_Min_43		 SRR2096057

Ovary_Min_50		 M028

head

 V053

head

 SRR060673

9_ovaries_total

 M047

female body

 SRR060674

9x140_ovaries_total

 SRR2096058

Ovary_Min_98		 V116

male body		 SRR060657

140_testes_total

 SRR060675

140x9_ovaries_total

 SRR060654

160x9_ovaries_total

 SRR060656

9x160_ovaries_total

 SRR060686

Argx9_0-2h_embryos_total

 SRR060688

160_ovaries_total

 SRR2096013

Ovary_Strain_9_oxidized		 SRR2096014

Ovary_Strain_160_oxidized		 SRR060660

Argentina_ovaries_total

 SRR060685

9xArg_0-2h_embryos_total

 SRR060682

9x140_0-2h_embryos_total

 SRR060684

140x9_0-2h_embryos_total

 SRR060658

140_ovaries_total

 SRR060687

9_0-2h_embryos_total

 SRR1106729

mixed whole adult body

 SRR060662

9x160_0-2h_embryos_total

 SRR060663

160_0-2h_embryos_total

 SRR1106721

embryo_10-12h

 SRR1106724

embryo_12-14h

 SRR1106730

embryo_16-30h

 SRR1106727

larvae

 SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		 SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		 SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		 GSM1528803

follicle cells		 M027

male body
...................................................TGAAGTACGCAAGTTGATTAGT......................................................................................... 22 1 1 212.00 212 29 16 10 20 16 21 2 1 7 16 0 0 10 12 9 4 6 6 1 0 3 3 0 3 0 0 5 0 1 2 0 0 0 3 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTA........................................................................................ 23 1 1 205.00 205 37 15 14 17 9 3 50 3 13 3 0 0 1 2 4 1 2 5 5 0 6 2 0 1 0 0 1 0 0 5 0 0 1 0 1 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGT......................................................................................... 23 1 1 161.00 161 15 9 8 6 2 16 0 3 5 8 0 0 2 1 18 8 15 8 2 0 0 13 8 1 0 1 3 0 1 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAG.......................................................................................... 22 0 1 159.00 159 13 13 11 5 7 16 1 5 3 7 2 6 7 6 6 3 5 1 1 6 2 2 7 7 7 2 1 0 0 2 0 1 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGCA........................................................................................ 23 0 1 141.00 141 0 22 15 0 10 0 1 13 1 0 11 19 7 8 0 5 0 0 7 7 0 0 0 0 0 0 0 2 2 0 1 4 1 0 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTACTCAAAGA................................................... 22 1 1 117.00 117 24 17 19 8 3 2 2 11 1 2 2 1 0 2 1 2 1 0 2 1 4 0 0 0 0 0 1 0 3 1 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGC......................................................................................... 23 0 1 92.00 92 0 5 6 0 11 0 0 10 0 0 15 8 3 1 0 1 0 0 2 3 0 0 4 4 4 2 0 3 1 0 0 3 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAG.......................................................................................... 21 0 1 87.00 87 7 8 2 5 3 1 1 2 5 3 5 4 5 3 1 1 4 0 2 5 1 5 2 2 2 1 0 1 0 2 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGC......................................................................................... 22 0 1 75.00 75 0 7 5 0 4 0 0 3 0 0 7 3 5 4 0 6 0 0 4 2 0 0 1 3 1 1 0 1 3 0 5 1 1 2 1 0 0 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTC........................................................................................ 23 2 1 61.00 61 18 11 4 8 0 0 1 5 11 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTACTCAAAG.................................................... 21 1 1 35.00 35 6 6 4 3 0 3 0 1 1 1 1 1 4 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATT............................................................................................ 20 0 1 35.00 35 2 2 0 1 4 1 0 0 1 4 0 0 3 4 0 1 0 0 0 2 0 0 0 0 4 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGTC........................................................................................ 24 2 1 35.00 35 9 2 6 4 1 0 0 0 4 1 0 0 1 0 3 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGTA........................................................................................ 24 1 1 33.00 33 2 2 2 4 0 3 11 1 1 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTAA....................................................................................... 24 2 1 26.00 26 3 0 1 2 0 1 1 0 4 1 0 0 0 0 0 3 0 2 0 0 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGCA........................................................................................ 24 0 1 25.00 25 0 3 1 0 2 0 0 2 0 0 6 3 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTA........................................................................................... 21 0 1 18.00 18 2 1 3 2 1 0 0 0 0 0 1 1 1 0 4 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGCC........................................................................................ 24 1 1 14.00 14 0 4 3 0 1 0 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGCAA....................................................................................... 24 1 1 9.00 9 0 1 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGTCC....................................................................................... 25 3 1 9.00 9 4 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTAAA...................................................................................... 25 3 1 8.00 8 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGCC........................................................................................ 23 1 1 7.00 7 0 2 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTA........................................................................................... 20 0 1 6.00 6 1 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGAT............................................................................................. 19 0 1 6.00 6 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGTAA....................................................................................... 25 2 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0
..................................................CTGAAGTACGCAAGTTGATTAT.......................................................................................... 22 1 1 4.00 4 0 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTAAAA..................................................................................... 26 3 1 4.00 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTCA....................................................................................... 24 3 1 4.00 4 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTCC....................................................................................... 24 3 1 4.00 4 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTACTCAAAGAA.................................................. 23 1 1 4.00 4 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTACTCAAAGAAA................................................. 24 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGTT........................................................................................ 24 2 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCTGAAGTACGCAAGTTGATTAG.......................................................................................... 23 0 1 3.00 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTAT....................................................................................... 24 1 1 3.00 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGCCA....................................................................................... 24 2 1 3.00 3 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCACGTTGATT............................................................................................ 20 1 1 3.00 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACCCAAGTTGATTAGT......................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAAA......................................................................................... 22 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGTAAA...................................................................................... 26 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTACTCAAA..................................................... 20 1 2 2.00 4 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGAACTCAAAG.................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGAACTCAAAGA................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGCAAA...................................................................................... 25 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTTT....................................................................................... 24 2 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGAT............................................................................................. 18 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................CCTGAAGTACGCAAGTTGATTA........................................................................................... 22 0 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATGCGT......................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGCACGCTAGTTGATT............................................................................................ 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTCTAGTACGCAAGTTGATTA........................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGCTGATTAGC......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTAAGTACGCAAGTTGATTAGT......................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAACTTGATTAGA......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGCTGATTA........................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGATCTACGCAAGTTGATTAGC......................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGCTGATTAGT......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGA.............................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCACGTTGATTAGTA........................................................................................ 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATTATTTGCGAGCTCAAAGA................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGCTGATT............................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACACAAGTTGATTAG.......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GAAGTACGCAAGTTGATTAGC......................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTATT......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGACGTTCGCAAGTTGATTAGTA........................................................................................ 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTATGA..................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTAAGCAAGTTGATTAGT......................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTAATTAGT......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAATTACGCAAGTTGATTAGT......................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGGTGATTA........................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAGGTAGATTAG.......................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGAAGTACGCAAGTTGATTAGCA........................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCACGTTGATTAG.......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCTGAAGTACGCAAGTTGATT............................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTAAGCAAGTTGATTAGTA........................................................................................ 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTATC......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTTATT............................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGAAGTACGCAAGTTGATTAGC......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTCGATTAGT......................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGCCC....................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTATTA........................................................................................ 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGCTGATTAG.......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGACTAGT......................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGAA........................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTCGT......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CTAATTATTTGCGTACTCA....................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGGACGCAAGTTGATTAG.......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATTATTTGCGTACTCAAAGAAA................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAACTACGCAAGTTGATTAGT......................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGCTTAG.......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTCT....................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTTATTAG.......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTGGATTAGTA........................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTATTC........................................................................................ 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTACTCAAGGA................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTT........................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAACTGCGCAAGTTGATTAGCAT....................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGAACTCAAAA.................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATTAGCT........................................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGCTGATTAGTA........................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATT............................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGAGTACGCAAGTTGATTAGC......................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCTGAAGTACGCAAGTTGATTAGTA........................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ATTTTCCTAATTATTTGCGTACTCAAAG.................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTG........................................................................................ 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGCACGCAAGTTGATTAGT......................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTACTCAA...................................................... 19 1 2 1.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATCATTTGCGTACTCAAAG.................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTAGGCAAGTTGATTAG.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CGAAGTACGCAAGTTGATTAGCA........................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CCTAATTATTTGCGAACTCAA...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGGA........................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGCAAGTTGATAGCC......................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGCAAAAA.................................................................................... 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTCATTAGTA........................................................................................ 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GTTGAGTTCGTCTGTGTAGG..................................................................................................................... 20 3 5 1.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGTAAGTTGATTAGC......................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACCCAAGTTGATTAG.......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAACTACGCAAGTTGATTAGC......................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGAAGTACGAAAGTTGATTAG.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGAAGTACGCAAGTTGATTAGTAC....................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGTGGCGGACAGTTGACTTTA............................................................................................................................... 21 3 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
.........................................................................................TAATTATTTGCTTACTCAAAGA................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CTAATTATTCGCGTACTCAAAAA................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TATTTGCGTACTCAAAGA................................................... 18 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTATTTGCGTAGTCAAA..................................................... 20 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAATGTGAGAGGCAGTTGATT.................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CATTTTGCGTGGGGAAAA............. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CATTTTGCGTGGGGATAAAG........... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TATATGTGTTGGCTGTCC............................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTGAGAGAAATTTACACCGTCCGTCAACTCAAATAGACACAACCCACAGGACTTCATGCGTTCAACTAATCGTACTAATTTTAAAAGGATTAATAAACGCTTGAGTTTCTTTGTGCTGTGTCGGTGTTTTGTAAAACACAGCCCTTTTTCACGAACGTCGT

*************************************.((((((((.((.((.(((.((.(((((((.((((((...(((....)))...))))))))))))).)))))..)).)).))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V116

male body		 SRR2096055

Ovary_Min_43		 SRR2096059

Ovary_Min_164		 SRR060676

9xArg_ovaries_total

 SRR2096056

Ovary_Min_46		 SRR2096057

Ovary_Min_50		 SRR2096060

Ovary_Min_193		 M047

female body

 M061

embryo

 SRR060684

140x9_0-2h_embryos_total

 SRR060668

160x9_males_carcasses_total

 SRR060687

9_0-2h_embryos_total

 V047

embryo

 M027

male body		 SRR060661

160x9_0-2h_embryos_total

 SRR060667

160_females_carcasses_total
..............................................ACAGGACTTCATGCGTTCAACT.............................................................................................. 22 0 1 7.00 7 0 2 2 0 1 1 1 0 0 0 0 0 0 0 0 0
............................CTCAAAGGGGCACAACCCA................................................................................................................... 19 3 12 4.25 51 45 0 0 0 0 0 0 2 1 0 0 0 0 1 1 1
...........................ACTCAAAGGGGCACAACCCA................................................................................................................... 20 3 8 1.75 14 11 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0
........................................................................................GATTAATAAACGCATGAGTTT..................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................ACAGGACTTCATGCGTTCAACTA............................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................ACTCAAAGGGACACAACCCAG.................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................ACTCAAAGGGGCACAACCC.................................................................................................................... 19 3 16 0.25 4 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
...........................................................................................................................................CAGCCCTTTGCCACGAAAG.... 19 3 11 0.18 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................TTGGTGGTGTGTCGGTGTT................................. 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................CCGTCCGAGAACTCAAAAAG............................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droVir3 scaffold_13049:14475496-14475657 - dvi_111 confident AAAC-TCTCT---------TTAAATGTGGCA---------GGCA-----GTTGAGTT-TATCTGTGTTGGGTGTCCT---GAAGTACGCAAGTTGATTAGCATGATTAAAATTTTC-CTAATTATTTGCGAACTCAAAGAAACACGACACAG--CCACAAAACATTTTGTGTCGG------------------GAAAAAGTGCTTGCA--GCA
droMoj3 scaffold_6680:12820673-12820863 + AAAA-CTCAA---------GCAAACTTGGAAGAGGTTGAGTTGAGTTTGGTTGGGTTGGGTCTGTGTT---TGTCCTGAGAAAGTACCTGAGTTGATTAGCATGATTAAAATTTTC-CTAATTATTTGCGCACTCAAAGAAAAACGAAACAG--CCACAAAACTTTGTTGTGAGTCGC----GGGGGGATGGGTAAAAAGTGCTTGTA--GCA
droGri2 scaffold_15110:15747027-15747216 + AAACAGAAAAACCGACGAGTG-----------AGCTTGTGCTGTCTCCGGTTGAGTT------GTCTTGAGGGCCAT---CAAGTGCCCAAGTTGATTAGCATGATTAAAATTTTC-CTAATTATTTGCGCACTCAAAGAAATACAAAATACGGCCACAAAAC--TTTTTGTCGTCGTTTATGCTGTAAAAGGGAAAAACCGTTTGTAGAGCA
droWil2 scf2_1100000004540:225565-225579 - GAAA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTTACAT--------------------------------------
dp5 XR_group6:2708163-2708324 - AGAC--------AGACGAATGAAAGGCAAAG---------AAGA-----GTAAGAGG-TGGCAATGTTGAAG---GT---GAAGTAAAAGACTTGATTAGCGTAATTAAAATTTTCTGTAACTATTCTCGCGCTCAAAGGAGTCGGGAACAAGC--GCAGAGACTCCTTTCACCTGGCCCGTG------------------TCTTGTG--GCA
droPer2 scaffold_9:1004402-1004571 - ACCAAGACAGGCAGACGAATGAAAGGCAAAG---------AAGA-----GTAAGAGG-TGGCAATGTTGAAG---GT---GAAGTAAAAGACTTGATTAGCGTAATTAAAATTTTCTGTAACTATTCTCGCGCTCAAAGGAGTCGGGAACAAGA--GCAGAGACTCCTTTCACCTGGCCCGTG------------------TCTTGTG--GCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAAC-TCTCT---------TTAAATGTGGCA---------GGCA-----GTTGAGTT-TATCTGTGTTGGGTGTCCT---GAAGTACGCAAGTTGATTAGCATGATTAAAATTTTC-CTAATTATTTGCGAACTCAAAGAAACACGACACAG--CCACAAAACATTTTGTGTCGG------------------GAAAAAGTGCTTGCA--GCASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................T---GAAGTACGCAAGTTGATTAGT................................................................................................................221212.002120000314002000021160010471216510631016202900000001000000000000000000000002000006329300000
...........................................................................CT---GAAGTACGCAAGTTGATTAGT................................................................................................................231161.00161000012000000001680028512313808961510000003000000000000000000001001000081512181300000
...........................................................................CT---GAAGTACGCAAGTTGATTAG.................................................................................................................221159.0015907001111010000167667336710012111351302011005000000000000000000002000000075726200000
............................................................................T---GAAGTACGCAAGTTGATTAGCA...............................................................................................................231141.001410020070411000000719751810021001522000110000113000000000000000000100100200000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTAGC................................................................................................................23192.00920430020300000100383101110110065000150000010000000000000100001102000100040400000000
............................................................................T---GAAGTACGCAAGTTGATTAG.................................................................................................................21187.00870210021101000013545153300101285705100002000000000000000000001000000024221500000
............................................................................T---GAAGTACGCAAGTTGATTAGC................................................................................................................22175.00750110241100000000235604403100570007000003000000000100100102001500000010300000000
............................................................................T---GAAGTACGCAAGTTGATTAGTC...............................................................................................................23161.00610000000001000001000011100000141181800000005000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATT...................................................................................................................20135.00350400000010000014203114410000021200000000000000000000000000003100000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTAGTC...............................................................................................................24135.00350000000000000001001040100020624900000000000000000000000000000000000001003100000
...........................................................................CT---GAAGTACGCAAGTTGATTAGCA...............................................................................................................24125.00250020000000000000230000200000130006100002000000000000000000001200000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTA..................................................................................................................21118.00180000000000000000011000110000312201000000000000000000000000000100000000004000000
...........................................................................CT---GAAGTACGCAAGTTGATTAGCC...............................................................................................................24114.00140000000000000000000100100000340004000000000000000000000000000000000000000010000
............................................................................T---GAAGTACGCAAGTTGATTAGCAA..............................................................................................................2419.0090000200000000000000000001000010001000022000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTAGTCC..............................................................................................................2519.0090000010000000000000001000000002400000001000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTAGCC...............................................................................................................2317.0070010000000000000001100000000020000000002000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTA..................................................................................................................2016.0060000000000000010020000000000010100000000000000000000000000000100000000000000000
...........................................................................CT---GAAGTACGCAAGTTGAT....................................................................................................................1916.0060100000000000010020000000000001000000010000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTAT.................................................................................................................2214.0040000000000000000001021000000000000000000000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTAGTCA..............................................................................................................2414.0040000000000000000000000010000002000000001000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTAGTCC..............................................................................................................2414.0040000000000000001000000000000001100000001000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTAGTT...............................................................................................................2413.0030000000000000000000000000000000200000001000000000000000000000000000000000000000
..........................................................................CCT---GAAGTACGCAAGTTGATTAG.................................................................................................................2313.0030000000000000000000000000000010000000000000000000000000000000000000001010000000
............................................................................T---GAAGTACGCAAGTTGATTAGCCA..............................................................................................................2413.0030000000000000000000000000000010000000002000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTAAA................................................................................................................2212.0020000000000000000000000000001000000000100000000000000000000000000000000000000000
......................................................................................................................TAATTATTTGCGAACTCAAAG..........................................................................2112.0020010000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................TAATTATTTGCGAACTCAAAGA.........................................................................2212.0020010000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................T---GAAGTACGCAAGTTGATTAGCAAA.............................................................................................................2512.0020000000010000100000000000000000000000000000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGAT....................................................................................................................1812.0020000000000000000000000000000100000000000000000000100000000000000000000000000000
..........................................................................CCT---GAAGTACGCAAGTTGATTA..................................................................................................................2212.0020000000000000011000000000000000000000000000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGA.....................................................................................................................1811.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................GAAGTACGCAAGTTGATTAGC................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTATT................................................................................................................2311.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
..........................................................................CCT---GAAGTACGCAAGTTGATT...................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTAGCCC..............................................................................................................2411.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTATTC...............................................................................................................2311.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTT..................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TAATTATTTGCGAACTCAAAA..........................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CT---GAAGTACGCAAGTTGATTAGCT...............................................................................................................2411.0010000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATT...................................................................................................................1911.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................T---GAAGTACGCAAGTTGATTAGTG...............................................................................................................2311.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................C-CTAATTATTTGCGAACTCAA............................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
AAAA-CTCAA---------GCAAACTTGGAAGAGGTTGAGTTGAGTTTGGTTGGGTTGGGTCTGTGTT---TGTCCTGAGAAAGTACCTGAGTTGATTAGCATGATTAAAATTTTC-CTAATTATTTGCGCACTCAAAGAAAAACGAAACAG--CCACAAAACTTTGTTGTGAGTCGC----GGGGGGATGGGTAAAAAGTGCTTGTA--GCASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
AAACAGAAAAACCGACGAGTG-----------AGCTTGTGCTGTCTCCGGTTGAGTT------GTCTTGAGGGCCAT---CAAGTGCCCAAGTTGATTAGCATGATTAAAATTTTC-CTAATTATTTGCGCACTCAAAGAAATACAAAATACGGCCACAAAAC--TTTTTGTCGTCGTTTATGCTGTAAAAGGGAAAAACCGTTTGTAGAGCASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droWil2
GAAA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTTACAT--------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
dp5
AGAC--------AGACGAATGAAAGGCAAAG---------AAGA-----GTAAGAGG-TGGCAATGTTGAAG---GT---GAAGTAAAAGACTTGATTAGCGTAATTAAAATTTTCTGTAACTATTCTCGCGCTCAAAGGAGTCGGGAACAAGC--GCAGAGACTCCTTTCACCTGGCCCGTG------------------TCTTGTG--GCASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................TTAAAATTTTCTGTAACTATTCTCGCGCT...............................................................................2911.0010100000000
..........................................GA-----GTAAGAGG-TGGCAATGTTGAAG---GT---.....................................................................................................................................2611.0010100000000
droPer2
ACCAAGACAGGCAGACGAATGAAAGGCAAAG---------AAGA-----GTAAGAGG-TGGCAATGTTGAAG---GT---GAAGTAAAAGACTTGATTAGCGTAATTAAAATTTTCTGTAACTATTCTCGCGCTCAAAGGAGTCGGGAACAAGA--GCAGAGACTCCTTTCACCTGGCCCGTG------------------TCTTGTG--GCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads

Generated: 10/20/2015 at 07:26 PM