dvi_11063

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCGCTGCCGACGCATGATGGATCGCAATGTGGTTGTGGTGCCCACTTCTGGTGCGGCTGCAGTAACAGTAAATGGCGGCATAGACAGAACGTGCGTGTCCCCTGTTGTTGTGTCCACAACCACTCGAGCTGTTAACGTGCCACAAGTGGCTGTTGCACCAGCACAAATGGCCATCGATTGGCAGGCTACGCAGCAAACGTTTCCCTCGGCACTTCCGCCGAAGTACAGCGAAATGGTGGCCACCAACTGAA **********************************************************..(((((((....((.((....((((.((((.(((.......))))))).)))).....)).))...)))))))....***************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060672 9x160_females_carcasses_total	M061 embryo	SRR060679 140x9_testes_total	V116 male body	SRR060658 140_ovaries_total	SRR060667 160_females_carcasses_total	V047 embryo	SRR060681 Argx9_testes_total	SRR1106728 larvae
...................................................................................................................ACAACCACTCGAGCTGTTAACGT.................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................ACAAGTGGCTGTTGCACCAG..........................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................AGTAACAGTAAATGGCGGC............................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................CACTCGAGCTGTTAACGTGC...............................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............GATGGATCGCAATGTGGTT.........................................................................................................................................................................................................................	19	0	2	1.00	2	0	0	0	0	0	1	0	1	0	0
............................................................................................................................................................................ATCGATTGGCAGGCTACGCAGCA........................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................GGCCATCGATTGGCAGGCTACGCAGC.........................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................CTGTTGCACCAGCACAAATGGCC...............................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GTACAGCGAAATGGTGGC...........	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................GTGTCCACAACCACTCGAGCTGTT......................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................CCACAACCACTCGAGCTGTTAACGTGC...............................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................CACTCGAGCTGTTAACGTGCCACAAGT........................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAATGTTTCCCTCGGTACTTCCGCC................................	25	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................TGCAGTAACAGTAAATGGCGGC............................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.CGCTGCCGACGCATGATGGAT.....................................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...............GATGGATCGCAATGTGGTTGTGGT....................................................................................................................................................................................................................	24	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.CGCTGCCGACGCATGATG........................................................................................................................................................................................................................................	18	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
.................TGGATCGCAATGTGGTTGTGG.....................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
.................................TGTGGTGCCCACTTCTGG........................................................................................................................................................................................................	18	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
....................................GGTGCCCACTTCTGGTGCGGC..................................................................................................................................................................................................	21	0	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.........................................CCAATCCTGGTGCTGCTGCAGT............................................................................................................................................................................................	22	3	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CCTGCACAAATGGACAGCGA..........................................................................	20	3	15	0.07	1	0	0	0	0	0	0	0	0	1	0
................................................................ACAGTAAACGGCGGC............................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1

GGCGACGGCTGCGTACTACCTAGCGTTACACCAACACCACGGGTGAAGACCACGCCGACGTCATTGTCATTTACCGCCGTATCTGTCTTGCACGCACAGGGGACAACAACACAGGTGTTGGTGAGCTCGACAATTGCACGGTGTTCACCGACAACGTGGTCGTGTTTACCGGTAGCTAACCGTCCGATGCGTCGTTTGCAAAGGGAGCCGTGAAGGCGGCTTCATGTCGCTTTACCACCGGTGGTTGACTT ***************************************************************************************************************..(((((((....((.((....((((.((((.(((.......))))))).)))).....)).))...)))))))....**********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060666 160_males_carcasses_total	SRR060672 9x160_females_carcasses_total	V047 embryo	M061 embryo	M047 female body	SRR060659 Argentina_testes_total
......................................................................TTACCGTCGTATCTGCCT...................................................................................................................................................................	18	2	6	0.17	1	1	0	0	0	0	0
................................................................................................................AGGTGTTCGTGCGCTCGA.........................................................................................................................	18	2	6	0.17	1	0	1	0	0	0	0
............................................................................................................................................................................TAGCTGACCGTCCTATTCGT...........................................................	20	3	9	0.11	1	0	0	1	0	0	0
................................................................................................................AGGTGTTCGTGCGCGCGAC........................................................................................................................	19	3	20	0.10	2	0	0	0	0	1	1
............................................................................................AGCACAGGGTACAACCACAC...........................................................................................................................................	20	3	14	0.07	1	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12963:9254244-9254494 -	dvi_11063	CCGCTGCCGACGCATGATGGATCGCAATGTGGTTGTGGTGCCCACTTCTG---------GTGCGGC------TGCAGTAACAGTAAATGGCGGCATAGACA----GA------ACGTGCGTGTCCCCTGTTGTTGTGTCCACAACCAC--T---CGAGCTGTTAACGTG-------------CCA-CAAGTGGCTGTT--GCACCAG----------------------------------------------------------------CACAAATGGCCATCGATTGGCAGGCTAC------GCAGCAA---ACGTTTC---CCTCGGCACTTCCGCCGAAGTACAG---CGAAATGGTGGCCACCAACTGAA--
droMoj3	scaffold_6500:2053867-2054117 +	dmo_1445	TCGCTGCCAGCGCTCGATGGAGCGCAATCTCGTCGTGGTGCCCACCTCGG---------GTCCAGC------GGCTGTCACACTGAATGGACGAAG-------------------GCGAGGATCTCCCGTCGTGGTGACCACCACCAG--CCCACAAG-----------------------------------TGGTT--GCAGCACCACCGCAACTGGCGAC-------------------------------------TGTGACTCCAGCTCAAACGGCCCTCGACTGGCAGAACTC------GCAGCAG---GCATTT---CCCTCCGTCTTGCCAGCCAAGTGCAA---CGATTTCGTGATAGTCAACTGAA--
droGri2	scaffold_8219:1121-1403 +		TCGCTGCATGCGCAGCATGTCACAAGGCGTGACCATGGTGCCCTCTTCGG---------GAGCTGC------AGTAGTCGCCGTGAATAACGGCCG-------------------CCTTCAGTCATCAGCTGTGGTCGC---AC---A--ACAACAAA-----------------------------------TAATTATGCCACAACAACAGATGATCCTCCCACAACAACAGATGATCGTCCC---ACAACAACAAGCTGTGCCACAAGCTCAAACGGCTCTTGCTTGGCAATCGTC------CCAGGAG---GCATATCCT---ACGGCACTTCCTCCCAAGTACGCACTCTAAATGGAGGACCCAAACTAT---
dp5	4_group3:1975126-1975393 -		CCGTTGCCGTCGCATGATGCGCAGGAATATCGTAGTGGTGCCAACAACCACAA---CTGTGGCAAT------ACC----------------------A---GCAGCCACCA-------CAGGAC-C---CTGCTGCGCACACACCCACACC---CAAACCACTGTGGTGCAGGGCCAACAGGCAGCCAACTGGCAGAT--GCAACAGCAGCAGCAACAGCA---------------GCAACAACAGCAACAGCATCAG---------------------------------------CAGCACCAGCAATATGCACCGATGAACGTCTCTGCATTGCCACCAAAGTACGA---CCAGGCGGTGGCCTCCTACTAA---
droPer2	scaffold_1:3448253-3448523 -		CCGTTGCCGTCGCATGATGCGCAGGAATATCGTAGTGGTGCCAACAACAACAA---CTGTGGCAGT------GCC----------------------A---GCAGCCACCA-------CAGGAC-C---CTGCTGCGCCCACACCCACACC---CAAACCACTGTGGTGCAGGGCCAACAGGCAGCCAACTGGCAGAT--GCAACAGCAGCAACAGCAGCAGC------------TGCAACAGCAGCAGCAGCAGCAG---------------------------------------CAGCAGCAGCAATATGCACCGATGAACGTCTCTGCATTGCCACCAAAGTACGA---CCAGGCGGTGGCCTCCTACTAA---
droAna3	scaffold_12943:4484049-4484108 -		CAGGTGTCAAAGGATGATGTCCCGAAGTATTGTGGTGGTCCCCACCACAG---------CAACAGC------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395973:681524-681589 -		TAGATGCCGGAGGATGATGTCCAGGAGTATTTTGGTGGTCCCCACTAA---------TGTTCCAGC------GACAACTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302270:453255-453504 -		TCGCTGCCGCAGGATGATGGCCAGGGGCATTGTGGTTGTGCCA------------CAGGTGGCCACGCCTGTTCA----------------------A---ACCTCTACGA-----------------------------------------------CTACAGTGATGCCTGCCCAGTGTGCCACCAACTGGCAGAT--GCAGCAGCAGCAGATGCAGCAACCTA---------TGAATCAGCAGATGCAGCAGCAGCCCATGCC-CATGCCCATGCAGA-----------------------TGCAGCAG---CCTCAGGTGATGTCCGCCTTGCCACCAAAGTACGA---TCAGGTGGTGGCAGCCAACTAA---
droFic1	scf7180000453904:205580-205638 +		TCGATGCCGCAGGATGATGTCCAGGAACATCGTGGTGGTGCCCACCCA---------GGTGGGAGT------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490728:831758-831942 +		CAGATGTCGTCGCATGATGTCCCGAAACAACATTGTGGTGTCTGTCCCAGCAACACAGGTGCAAAT------GCC----------------------A---AACACCACCA-----------------------------------------------CCACAGTGATGCCTGCCCAATGTGCGACAAACTGGCAGGC--CCA------------------------------------------------------------------------------------------------------GCAGCAA---CCGCAGATGATGTCCTCCCTGCCACCGAAGTACGA---TCAGGCTGTGGCCGCCAACT-----
droRho1	scf7180000780062:358057-358238 -		CAGATGTCGTCGCATGATGTCCAGGAACAACATTGTGGTGTCTGTGCCAGCGGCACA------------AGTGCA----------------------A---ACCACCGCCA-----------------------------------------------CCACAGTGACGCCTGCCCAATGTGCGACCCACTGGCAGAC--TCA------------------------------------------------------------------------------------------------------GCAGGAG---CCGCACGTGATGTCCGCCCTGCCACCGAAGTACGA---TCAGGCTGTAGCTGCCAACTAAA--
droBia1	scf7180000302261:2429733-2429926 +		CAGGTGTCGTCGCATGATGTCCAGGAACAATATCGTGGTGTCCGTGCCAGCAGGACAGGTGGCTACGCCAGTGCA----------------------A---GCCACCGCCA-----------------------------------------------CCACAGTGATACCTGCCCAGAACGCGACCCACTGGCAGGC--GCA------------------------------------------------------------------------------------------------------GCAGGAG---CCTCAGACCATGTCCGCCCTGCCACCTAAGTACGA---CCAAGCTGTGGCTGCCAACTAAA--
droTak1	scf7180000415874:256778-256970 +		CCGATGCCGTCGCATGATGTCCCGGAATAATATTGTGGTGTCCGTCCCAGCTGGACAGGTGGGTGTGCCAGTGCA----------------------A---ACCA---CCA-----------------------------------------------CCACAGTGGTGCCTGCCCAGAATGCGACCCACTGGCAGGT--TCA------------------------------------------------------------------------------------------------------GCAGCAG---CCGCAGACCATGTCCGCCCTGCCGCCAAAGTACGA---TCAAGCTGTTGCCGCCAACTAAGCC
droEug1	scf7180000409554:2060503-2060701 -		CAGATGCCGTCGCATGATGGCTAGGGGAAATATTGTGGTGACCGTGCCAGCAGCACAGGTGGGTGTGCCAGCGCA----------------------GACAACCACCACCG-----------------------------------------------CCACAGTGATGCCTGCCCAGAATGCCACCCACTGGCAGAA--TCA------------------------------------------------------------------------------------------------------GCAGGGG---CCTCAGACGATGTCCGCCCTGCCGCCGAAGTACGA---TCAGGTTGTGGCTGCCAACTGAGCA
dm3	chr2L:4007801-4007923 +		CCAGTGCCGCAGGATGATGTCCCGAAATGTTGTGGTTGTTCCCACTCA---------GGTTGCAGT------TCCAGTTGCTACCAACAACAACATC----ACCACCACTACTACATTTGTACCAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGTGTCCAC----------
droSim2	2l:3861205-3861267 +		CCAGTGCCGCAGGATGATGTCCCGAAATGTTGTGGTTGTGCCCACTCA---------GGTTGGAGT------TCCAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_5:2110225-2110293 +		CCGGTGCTGCAGGATGATGAGACGAAATGTGGTGCTGGTGCCCACTCG---------ATTGGCTGC------TCCTGCTGTGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:4026973-4027015 +		CAGATGCCGTCGCATGATGTCCAGAAACAACATTGTGGTCTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:4067785-4067978 +		CAGATGCCGTCGCATGATGTCCAGAAACAACATTGTGGTGACCGTGCCAGCAGGCCAGGTGGCTTGTCCAGTGCA----------------------G---ACCACAGCCA-----------------------------------------------CCACAGTGATGCCTGCCCAGTGTGCAACCCACTGGCAGTC--TCA------------------------------------------------------------------------------------------------------GCAGCAG---TCTCAGACAATGTCCGCACTGCCACCCAAGTACGA---TCAGGCTGTGGCAGCGAACTGAG--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CCGCTGCCGACGCATGATGGATCGCAATGTGGTTGTGGTGCCCACTTCTG---------GTGCGGC------TGCAGTAACAGTAAATGGCGGCATAGACA----GA------ACGTGCGTGTCCCCTGTTGTTGTGTCCACAACCAC--T---CGAGCTGTTAACGTG-------------CCA-CAAGTGGCTGTT--GCACCAG----------------------------------------------------------------CACAAATGGCCATCGATTGGCAGGCTAC------GCAGCAA---ACGTTTC---CCTCGGCACTTCCGCCGAAGTACAG---CGAAATGGTGGCCACCAACTGAA--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................ACAACCAC--T---CGAGCTGTTAACGT..................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................A-CAAGTGGCTGTT--GCACCAG----------------------------------------------------------------...........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................AGTAACAGTAAATGGCGGC............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CAC--T---CGAGCTGTTAACGTG-------------C...................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GATGGATCGCAATGTGGTT........................................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................ATCGATTGGCAGGCTAC------GCAGCA...................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GGCCATCGATTGGCAGGCTAC------GCAGC....................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTGTT--GCACCAG----------------------------------------------------------------CACAAATGGCC................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTACAG---CGAAATGGTGGC.............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTGTCCACAACCAC--T---CGAGCTGTT.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CCACAACCAC--T---CGAGCTGTTAACGTG-------------C...................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CAC--T---CGAGCTGTTAACGTG-------------CCA-CAAGT...........................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TGCAGTAACAGTAAATGGCGGC............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGCTGCCGACGCATGATGGAT....................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GATGGATCGCAATGTGGTTGTGGT...................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGCTGCCGACGCATGATG.......................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGGATCGCAATGTGGTTGTGG....................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGTGGTGCCCACTTCTG---------G..............................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GGTGCCCACTTCTG---------GTGCGGC------..................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCGCTGCCAGCGCTCGATGGAGCGCAATCTCGTCGTGGTGCCCACCTCGG---------GTCCAGC------GGCTGTCACACTGAATGGACGAAG-------------------GCGAGGATCTCCCGTCGTGGTGACCACCACCAG--CCCACAAG-----------------------------------TGGTT--GCAGCACCACCGCAACTGGCGAC-------------------------------------TGTGACTCCAGCTCAAACGGCCCTCGACTGGCAGAACTC------GCAGCAG---GCATTT---CCCTCCGTCTTGCCAGCCAAGTGCAA---CGATTTCGTGATAGTCAACTGAA--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................GACTGGCAGAACTC------GCAGCAG---GC.............................................................	23	1	2.00	2	1	0	0	0	0	1
..............CGATGGAGCGCAATCTCGTC........................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
.............................................................CCAGC------GGCTGTCACACTGA....................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......................GCAATCTCGTCGTGGTGCC................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CAAACGGCCCTCGACTGGCAGAACT................................................................................	25	1	1.00	1	1	0	0	0	0	0
................ATGGAGCGCAATCTCGTCGTGGT...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............CTCGATGGAGCGCAATCTCGTCGTGGT...................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............CGATGGAGCGCAATCTCGTCGT......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................CGCAACTGGCGAC-------------------------------------TGTGACTCC.............................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................CACACTGAATGGACGAAG-------------------G......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........................ATCTCGTCGTGGTGCCCACCTCGG---------GT.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTGCAA---CGATTTCGTGATAGTCAACT.....	26	1	1.00	1	1	0	0	0	0	0
.....................................GTGCCCACCTCGG---------GTCCAGC------GGCT..............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................ATGGACGAAG-------------------GCGAGGATCTCCCGT........................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............CGATGGAGCGCAATCTCGTCGTG.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................AATCTCGTCGTGGTGCCCACCTC..........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GGCCCTCGACTGGCAGAACTC------GCA......................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................TGAATGGACGAAG-------------------GCGAGGAT...............................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCCAAGTGCAA---CGATTTCGTGAT.............	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGTGCAA---CGATTTCGTGATAGTCAACT.....	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTTCGTGATAGTCAACTGAA--	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TGCCAGCCAAGTGCAA---CGATTTCGTGAT.............	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................CAAG-----------------------------------TGGTT--GCAGCACCACCGCAAC..................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTCAAACGGCCCTCGACTGGCAGAACT................................................................................	27	1	1.00	1	1	0	0	0	0	0
.CGCTGCCAGCGCTCGATGGAGC...................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................ACACTGAATGGACGAAG-------------------GCGAG..................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............CGATGGAGCGCAATCTCGTCGTGGT...................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................AGAACTC------GCAGCAG---GCATT..........................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AAGTGCAA---CGATTTCGTGATAGTCAA.......	26	1	1.00	1	0	0	0	0	0	1
........................................................................GGCTGTCACACTGAATGGA...............................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............CGATGGAGCGCAATCTCGTCGTGGTGC.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTCGACTGGCAGAACTC------GCAGCAG---...............................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATTT---CCCTCCGTCTTGCCAGCCAAGT................................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................GCAA---CGATTTCGTGATAGTCAACT.....	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................GGCGAC-------------------------------------TGTGACTCCAGCT.........................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................GAAG-------------------GCGAGGATCTCCCGTCGTGGT..................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1

droGri2

TCGCTGCATGCGCAGCATGTCACAAGGCGTGACCATGGTGCCCTCTTCGG---------GAGCTGC------AGTAGTCGCCGTGAATAACGGCCG-------------------CCTTCAGTCATCAGCTGTGGTCGC---AC---A--ACAACAAA-----------------------------------TAATTATGCCACAACAACAGATGATCCTCCCACAACAACAGATGATCGTCCC---ACAACAACAAGCTGTGCCACAAGCTCAAACGGCTCTTGCTTGGCAATCGTC------CCAGGAG---GCATATCCT---ACGGCACTTCCTCCCAAGTACGCACTCTAAATGGAGGACCCAAACTAT---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

CCGTTGCCGTCGCATGATGCGCAGGAATATCGTAGTGGTGCCAACAACCACAA---CTGTGGCAAT------ACC----------------------A---GCAGCCACCA-------CAGGAC-C---CTGCTGCGCACACACCCACACC---CAAACCACTGTGGTGCAGGGCCAACAGGCAGCCAACTGGCAGAT--GCAACAGCAGCAGCAACAGCA---------------GCAACAACAGCAACAGCATCAG---------------------------------------CAGCACCAGCAATATGCACCGATGAACGTCTCTGCATTGCCACCAAAGTACGA---CCAGGCGGTGGCCTCCTACTAA---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................GGCCAACAGGCAGCCAACTGGCAGAT--..................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AGCAATATGCACCGATGAACGTCTCT................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................ATATGCACCGATGAACGTCTCTGC..............................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................CACTGTGGTGCAGGGCCA.........................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGCCAACTGGCAGAT--GCAACAGCAGCA......................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................CCA-------CAGGAC-C---CTGCTGCGC................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAAAGTACGA---CCAGGCGGTG...............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ATGATGCGCAGGAATATCGTAGTG.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GCATTGCCACCAAAGTACGA---CC.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GCCGTCGCATGATGCGCAGGAATATC...........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ATGATGCGCAGGAATATCGTAGTGG....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAGGGCCAACAGGCAGCCAACTGGCA.......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ATGCACCGATGAACGTCTCTG...............................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................A---------------GCAACAACAGCAACAGCATCAG---------------------------------------CAGC.............................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACCACTGTGGTGCAGGGCCAACAGGC...................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GCAACAGCATCAG---------------------------------------CAGCACCAGC.......................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AACAGCATCAG---------------------------------------CAGCACCAGC.......................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AGCAACAGCATCAG---------------------------------------CAGCA............................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGCATCAG---------------------------------------CAGCACCAGC.......................................................................	18	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AACAGCAGCAGCAACAGCA---------------GCA...........................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................CAACAGCA---------------GCAACAACAGCAAC................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................GCAGCAGCAACAGCA---------------GCAAC.........................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

CCGTTGCCGTCGCATGATGCGCAGGAATATCGTAGTGGTGCCAACAACAACAA---CTGTGGCAGT------GCC----------------------A---GCAGCCACCA-------CAGGAC-C---CTGCTGCGCCCACACCCACACC---CAAACCACTGTGGTGCAGGGCCAACAGGCAGCCAACTGGCAGAT--GCAACAGCAGCAACAGCAGCAGC------------TGCAACAGCAGCAGCAGCAGCAG---------------------------------------CAGCAGCAGCAATATGCACCGATGAACGTCTCTGCATTGCCACCAAAGTACGA---CCAGGCGGTGGCCTCCTACTAA---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................CACTGTGGTGCAGGGCCAACA......................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	1
...................................................................................................................................................................................................................................................................................................................AATATGCACCGATGAACGTCTCTGC..............................................	25	1	2.00	2	1	1	0	0	0	0
..............................................................................................................A-------CAGGAC-C---CTGCTGCGCC...............................................................................................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0
...............................GTAGTGGTGCCAACAACAACAA---CTGT..............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
............................ATCGTAGTGGTGCCAACAAC..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................GCGCAGGAATATCGTAGTG.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AATATGCACCGATGAACGTCTCTGCA.............................................	26	1	1.00	1	0	0	1	0	0	0
.............ATGATGCGCAGGAATATCGTAGT......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................CAAAGTACGA---CCAGGCGGT................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................GTGGTGCAGGGCCAACAGGC...................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................GAATATCGTAGTGGTGCCAAC.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................AGGCAGCCAACTGGCAGAT--GC................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................................GCC----------------------A---GCAGCCACCA-------CAGGAC-C---C........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAACGTCTCTGCATTGCCACC.....................................	21	1	1.00	1	0	1	0	0	0	0
..........................ATATCGTAGTGGTGCCAACAACAAC.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................AGGAC-C---CTGCTGCGCCCACACC.........................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................ACTGTGGTGCAGGGCCAACA......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................AGCCAACTGGCAGAT--GCAACAGCA.........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................GCACCGATGAACGTCTCTGCA.............................................	21	1	1.00	1	0	1	0	0	0	0
..........................................AACAACAACAA---CTGTGGCA..........................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................................................................AACAGCAGCAACAGCAGCAGC------------...............................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................AGCAGCAACAGCAGCAGC------------T..............................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droAna3

CAGGTGTCAAAGGATGATGTCCCGAAGTATTGTGGTGGTCCCCACCACAG---------CAACAGC------TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............GATGTCCCGAAGTATTGTGGT......................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	2	0	0	0	3	0
........AAAGGATGATGTCCCGAAGTATTGTGGT......................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	4	0	0	0	0	0
............GATGATGTCCCGAAGTATTGTGGT......................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	2	0	0	0	2	0
...........GGATGATGTCCCGAAGTATTGTGGT......................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
.............ATGATGTCCCGAAGTATTGTGGT......................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	0	0	0	2	0
....................................GGTCCCCACCACAG---------CAACAGC------T.................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
..........................GTATTGTGGTGGTCCCCACCAC..........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................GGTCCCCACCACAG---------CAACAGC------..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........AAGGATGATGTCCCGAAGTATTGTGGT......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............GATGATGTCCCGAAGTATTGTGGC......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0

droBip1

TAGATGCCGGAGGATGATGTCCAGGAGTATTTTGGTGGTCCCCACTAA---------TGTTCCAGC------GACAACTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCGCTGCCGCAGGATGATGGCCAGGGGCATTGTGGTTGTGCCA------------CAGGTGGCCACGCCTGTTCA----------------------A---ACCTCTACGA-----------------------------------------------CTACAGTGATGCCTGCCCAGTGTGCCACCAACTGGCAGAT--GCAGCAGCAGCAGATGCAGCAACCTA---------TGAATCAGCAGATGCAGCAGCAGCCCATGCC-CATGCCCATGCAGA-----------------------TGCAGCAG---CCTCAGGTGATGTCCGCCTTGCCACCAAAGTACGA---TCAGGTGGTGGCAGCCAACTAA---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGATGCCGCAGGATGATGTCCAGGAACATCGTGGTGGTGCCCACCCA---------GGTGGGAGT------GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGATGTCGTCGCATGATGTCCCGAAACAACATTGTGGTGTCTGTCCCAGCAACACAGGTGCAAAT------GCC----------------------A---AACACCACCA-----------------------------------------------CCACAGTGATGCCTGCCCAATGTGCGACAAACTGGCAGGC--CCA------------------------------------------------------------------------------------------------------GCAGCAA---CCGCAGATGATGTCCTCCCTGCCACCGAAGTACGA---TCAGGCTGTGGCCGCCAACT-----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGATGTCGTCGCATGATGTCCAGGAACAACATTGTGGTGTCTGTGCCAGCGGCACA------------AGTGCA----------------------A---ACCACCGCCA-----------------------------------------------CCACAGTGACGCCTGCCCAATGTGCGACCCACTGGCAGAC--TCA------------------------------------------------------------------------------------------------------GCAGGAG---CCGCACGTGATGTCCGCCCTGCCACCGAAGTACGA---TCAGGCTGTAGCTGCCAACTAAA--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGGTGTCGTCGCATGATGTCCAGGAACAATATCGTGGTGTCCGTGCCAGCAGGACAGGTGGCTACGCCAGTGCA----------------------A---GCCACCGCCA-----------------------------------------------CCACAGTGATACCTGCCCAGAACGCGACCCACTGGCAGGC--GCA------------------------------------------------------------------------------------------------------GCAGGAG---CCTCAGACCATGTCCGCCCTGCCACCTAAGTACGA---CCAAGCTGTGGCTGCCAACTAAA--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCGATGCCGTCGCATGATGTCCCGGAATAATATTGTGGTGTCCGTCCCAGCTGGACAGGTGGGTGTGCCAGTGCA----------------------A---ACCA---CCA-----------------------------------------------CCACAGTGGTGCCTGCCCAGAATGCGACCCACTGGCAGGT--TCA------------------------------------------------------------------------------------------------------GCAGCAG---CCGCAGACCATGTCCGCCCTGCCGCCAAAGTACGA---TCAAGCTGTTGCCGCCAACTAAGCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAGATGCCGTCGCATGATGGCTAGGGGAAATATTGTGGTGACCGTGCCAGCAGCACAGGTGGGTGTGCCAGCGCA----------------------GACAACCACCACCG-----------------------------------------------CCACAGTGATGCCTGCCCAGAATGCCACCCACTGGCAGAA--TCA------------------------------------------------------------------------------------------------------GCAGGGG---CCTCAGACGATGTCCGCCCTGCCGCCGAAGTACGA---TCAGGTTGTGGCTGCCAACTGAGCA	Size	Hit Count	Total Norm	Total
No Reads

dm3

CCAGTGCCGCAGGATGATGTCCCGAAATGTTGTGGTTGTTCCCACTCA---------GGTTGCAGT------TCCAGTTGCTACCAACAACAACATC----ACCACCACTACTACATTTGTACCAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGTGTCCAC----------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................TGTGGTTGTTCCCACTCA---------GGTTGCAGT------..................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.............................TTGTGGTTGTTCCCACTCA---------G................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTCCCGAAATGTTGTGGTT.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GATGATGTCCCGAAATGTTGTGGT......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TGGTTGTTCCCACTCA---------GGTTGC...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CAGTGCCGCAGGATGATGTCCCGAA................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGCAGGATGATGTCCCGA.................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................CACTCA---------GGTTGCAGT------TCCAGT............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GTTCCCACTCA---------GGTTGCA..........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................ACTCA---------GGTTGCAGT------TCCAGTT...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTCCCACTCA---------GGTTGCAGT------..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCAGTGCCGCAGGATGATGTCCCGAAATGTTGTGGTTGTGCCCACTCA---------GGTTGGAGT------TCCAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................GTGCCCACTCA---------GGTTGGA..........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCGGTGCTGCAGGATGATGAGACGAAATGTGGTGCTGGTGCCCACTCG---------ATTGGCTGC------TCCTGCTGTGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CAGATGCCGTCGCATGATGTCCAGAAACAACATTGTGGTCTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................ATGTCCAGAAACAACATTGT......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....TGCCGTCGCATGATGTCCAGA.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................TGTCCAGAAACAACATTGT......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................ATGTCCAGAAACAACATTGTGG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
CAGATGCCGTCGCATGATGTCCAG..................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CAGATGCCGTCGCATGATGTCCAGAAACAACATTGTGGTGACCGTGCCAGCAGGCCAGGTGGCTTGTCCAGTGCA----------------------G---ACCACAGCCA-----------------------------------------------CCACAGTGATGCCTGCCCAGTGTGCAACCCACTGGCAGTC--TCA------------------------------------------------------------------------------------------------------GCAGCAG---TCTCAGACAATGTCCGCACTGCCACCCAAGTACGA---TCAGGCTGTGGCAGCGAACTGAG--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................................................................................ACCCAAGTACGA---TCAGGCTGTGGC.............	24	1	5.00	5	5	0	0	0	0	0	0
................................................................TGTCCAGTGCA----------------------G---ACCACAGC.............................................................................................................................................................................................................................................................................	20	1	2.00	2	1	1	0	0	0	0	0
.AGATGCCGTCGCATGATGTCC....................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CACCCAAGTACGA---TCAGGCTGTGGC.............	25	1	2.00	2	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGACAATGTCCGCACTGC.........................................	18	1	2.00	2	0	0	0	0	0	2	0
.................................................................................................................................................................................GTGTGCAACCCACTGGCAGT.....................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
.AGATGCCGTCGCATGATGTCCA...................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ACCCAAGTACGA---TCAGGCTGT................	21	1	1.00	1	1	0	0	0	0	0	0
..GATGCCGTCGCATGATGTCC....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................GTGTGCAACCCACTGGCAGTC--TCA------------------------------------------------------------------------------------------------------GC.......................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...........................................GTGCCAGCAGGCCAGGTGGCTT.........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................CA------------------------------------------------------------------------------------------------------GCAGCAG---TCTCAGACAATGTCCGCA.............................................	27	1	1.00	1	1	0	0	0	0	0	0
......................AGAAACAACATTGTGGTGACCGTGCCA.........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................CAGAAACAACATTGTGGTGACC...............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.................................................................GTCCAGTGCA----------------------G---ACCACAGCCA-----------------------------------------------CCACA.......................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...................TCCAGAAACAACATTGTG.....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GA---TCAGGCTGTGGCAGCGAACT.....	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................C--TCA------------------------------------------------------------------------------------------------------GCAGCAG---TCTCAGACAAT....................................................	22	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................GTGCAACCCACTGGCAGTC--T.................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AAGTACGA---TCAGGCTGTGGCAG...........	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................GTACGA---TCAGGCTGTGGCA............	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................CCACCCAAGTACGA---TCAGGCTGTG...............	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------GCAGCAG---TCTCAGACAATGTCC................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................AATGTCCGCACTGCCACCCA...................................	20	1	1.00	1	1	0	0	0	0	0	0
......................AGAAACAACATTGTGGTGACC...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTACGA---TCAGGCTGTGGC.............	18	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTACGA---TCAGGCTGTGGCAGCGAA.......	24	1	1.00	1	1	0	0	0	0	0	0
............................................TGCCAGCAGGCCAGGTGGCTTGTC......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................AGTC--TCA------------------------------------------------------------------------------------------------------GCAGCAG---TCTCA..........................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCAGGCTGTGGCAGCGAAC......	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GA---TCAGGCTGTGGCAGCGAACTGA...	24	1	1.00	1	1	0	0	0	0	0	0
...ATGCCGTCGCATGATGTCCAGA.................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....TGCCGTCGCATGATGTCCAGA.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................GTCCAGAAACAACATTGT......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................AGTACGA---TCAGGCTGTGGCA............	20	1	1.00	1	1	0	0	0	0	0	0
................................................................TGTCCAGTGCA----------------------G---ACCACAGCCA-----------------------------------------------CCACA.......................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ACCCAAGTACGA---TCAGGCTGTGGCA............	25	1	1.00	1	1	0	0	0	0	0	0
........GTCGCATGATGTCCAGAAACAACATTGTG.....................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
........................................................................GCA----------------------G---ACCACAGCCA-----------------------------------------------CCACA.......................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................GTGATGCCTGCCCAGTGTGCA..................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAGCAG---TCTCAGACAATGTCCG...............................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ACCCAAGTACGA---TCAGGCTGTGGCAGC..........	27	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTACGA---TCAGGCTGTGGCAGC..........	21	1	1.00	1	0	0	0	0	1	0	0
..............................CATTGTGGTGACCGTGCCAGCA......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.................................................................GTCCAGTGCA----------------------G---ACCACAGC.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...........GCATGATGTCCAGAAACAAC...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................GA---TCAGGCTGTGGCAGCGA........	19	1	1.00	1	1	0	0	0	0	0	0
..............TGATGTCCAGAAACAACATTGT......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................AGTC--TCA------------------------------------------------------------------------------------------------------GCAGCAG---TCTC...........................................................	18	1	1.00	1	1	0	0	0	0	0	0
..........................ACAACATTGTGGTGACCGTGCCAGCA......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CACCCAAGTACGA---TCAGGCTGTGGCAGC..........	28	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................G---ACCACAGCCA-----------------------------------------------CCACAGT.....................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CACCCAAGTACGA---TCAGGCTGTGGCA............	26	1	1.00	1	1	0	0	0	0	0	0
.......................................GACCGTGCCAGCAGGCCAGGTG.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
...............................ATTGTGGTGACCGTGCCAGCA......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................ACGA---TCAGGCTGTGGCAGCGAACTGA...	26	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................ACGA---TCAGGCTGTGGCAGCGAACTGAG--	27	1	1.00	1	1	0	0	0	0	0	0
..................GTCCAGAAACAACATTGTGGTGACC...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................AAACAACATTGTGGTGAC................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................GGCAGTC--TCA------------------------------------------------------------------------------------------------------GCAGCAG---TCTCA..........................................................	22	1	1.00	1	0	0	0	0	0	1	0
.....................................................................AGTGCA----------------------G---ACCACAGCCA-----------------------------------------------CCACAGT.....................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GCCACCCAAGTACGA---TCAGGCTGTG...............	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CCACCCAAGTACGA---TCAGGCTGT................	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGACAATGTCCGCACTGCCACCCA...................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TACGA---TCAGGCTGTGGCAGCGAACTGA...	27	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................AAGTACGA---TCAGGCTGTGGCAGC..........	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................CA------------------------------------------------------------------------------------------------------GCAGCAG---TCTCAGACAAT....................................................	20	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................GCAACCCACTGGCAGTC--TCA------------------------------------------------------------------------------------------------------GC.......................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CCAAGTACGA---TCAGGCTGTGG..............	21	1	1.00	1	0	0	0	0	1	0	0
.............................ACATTGTGGTGACCGTGCCAGCA......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ACGA---TCAGGCTGTGGCAGCGAACT.....	24	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................GTGATGCCTGCCCAGTGTGC...................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTACGA---TCAGGCTGTGGCAGCGAAC......	25	1	1.00	1	1	0	0	0	0	0	0
..............................CATTGTGGTGACCGTGCCAG........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................GTACGA---TCAGGCTGTGGCAG...........	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................CACAGTGATGCCTGCCCAGT.......................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GACAATGTCCGCACTGCC........................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CACCCAAGTACGA---TCAGGCT..................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GA---TCAGGCTGTGGCAGCGAACTG....	23	1	1.00	1	0	0	0	0	1	0	0

dvi_11063

scaffold_12963:9254294-9254444 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.9	-16.8	-16.6