ID:

dvi_11061

 Coordinate:

scaffold_12963:9162949-9163099 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.8 -22.7 -22.7

Flybase annnotation

CDS [Dvir\GJ24548-cds]; exon [dvir_GLEANR_982:2]; intron [Dvir\GJ24548-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAATTTGACAACGTAGCCATTGGTGAAGTGCAGTTGAGTTCCGGCTATAGGTAAGTAAAACCCGCTCTAACAACCACACACACACACACACACCCACACACACCCACAGCCACTCACACTCGCTCATAAAACGATGATGTGCGTCGGGCCCGTAGTTAACTGCAGCAATGAAAATCTGTGGAAATTGCTGTGCCAGTTCCTGTTCCTCTTGCTGTTTGCAGTTATCCTGTTATGTCAGCCCTTGCCATTTG
**************************************************............................................((((((...((((((((((.((((.(((.((.......))))))))).)).))((..((((....)))).)).........))))))....)).)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 SRR060663
160_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060680
 9xArg_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 M061
embryo
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
.................CGTCGGTGAAGTGCAGT......................................................................................................................................................................................................................... 17 2 16 4.06 65 65 0 0 0 0 0 0 0 0 0 0 0
...............................AGTTGAGTTCCGGCTATAGA........................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................ATTGGTGAAGTGCAGTTGAGTTCC................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................AACAACCACACACACACACACACACC............................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................ATTGGTGAAGTGCAGTTGA...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............TCCATTGGTGAAGTGCAGTTGA...................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...TTTGACAACGTAGCCATTGGTGAAGT.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................GGTGAAGTGCAGTTGAGTTCCGGC.............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...TTTGACAACGTAGCCATTGG.................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................GAAGTGCAGTTGAGTTCCGGCTAT........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............GCCATTGGTGAAGTGCAGTTGA...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................CAACCACACACACACACACACACCCAC.......................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................ACCACACACACACACACACACCCA........................................................................................................................................................... 24 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAGTTCCAGTGCCTCTTGC....................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................AACAACCACACACACACACACA................................................................................................................................................................. 22 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................CACACACACCCACACACACCCAC................................................................................................................................................ 23 0 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................ACACACCCACACACACCCACA............................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................CACACACACACACACCCACA......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................TGATGTGCCAGTTCCGGGT............................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................ACTGCTCCTCTAGCTGTTT.................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................ACTGCTCCTCTAGCTGTTTG................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTTAAACTGTTGCATCGGTAACCACTTCACGTCAACTCAAGGCCGATATCCATTCATTTTGGGCGAGATTGTTGGTGTGTGTGTGTGTGTGTGGGTGTGTGTGGGTGTCGGTGAGTGTGAGCGAGTATTTTGCTACTACACGCAGCCCGGGCATCAATTGACGTCGTTACTTTTAGACACCTTTAACGACACGGTCAAGGACAAGGAGAACGACAAACGTCAATAGGACAATACAGTCGGGAACGGTAAAC
**************************************************............................................((((((...((((((((((.((((.(((.((.......))))))))).)).))((..((((....)))).)).........))))))....)).)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060682
9x140_0-2h_embryos_total
 V053
head
 V116
male body		 V047
embryo
 SRR060678
9x140_testes_total
 SRR060658
140_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
........................................................................................................................................................ATCAGTTGACGTCGGTACTTT.............................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GCCCGGGTTTCAATTGATG........................................................................................ 19 3 17 0.82 14 0 12 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................CAATCGACGTCGTTACTTC.............................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GCAATCGACGTCGTTACTT............................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CAATCGACGTCGTGACTTCTA............................................................................ 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCGGTGACTGTGTGCGAGTTT........................................................................................................................... 21 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................TTGTTGGTGTGTGTGTGTGTGT................................................................................................................................................................. 22 0 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................GTCGTTCCTTCTAGGCACC...................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................TCGGCGAGTGTGTGCGAGTCT........................................................................................................................... 21 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................TGCCTGTGAGTGTGAGCGA............................................................................................................................... 19 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................GGGCGACATTGTGCGTGTGT........................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAAGGAGAACAACAAAGG................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................TGTGTGTGGGTGTGTGTG.................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................GTGTGTGTGGGTGTGTGT..................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................GTGTGTGTGTGTGGGTGTGTG...................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................AGGCCGATGTACATACATT................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CAAACGTCAATAGGCCT..................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:9162899-9163149 - dvi_11061 CAATTTGACAACGTAGCCATTGGTGAAGTGCAGTTGAGTTCCGGCTATAGGTAAGTAAAACCCGC-TCTAACAACCACACACACACACACACACC--------------C--ACACAC--ACCCACAGCCACTCACACTCGCTCATAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGTGCGTCGGGC------------------CCGTAGTTAACTG------------CAGC---AATGAAAATCTGT----GGAAATTGCTG-TGCCAGTTCCTGTTCCTCT--TGCTGTTTGCAGTTATCCTGTT------ATGTCAGCCCT--------TGCCATTT----------G
droMoj3 scaffold_6500:2162327-2162522 + CAGTTTGACAACGTGGCCATTGGCGAAGTGCAATTGAGTTCGGGCTACAGGTGAGTTAAATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACAGGTGCAATT------------------------------------AAATCATGATGA------------TGATGAAAAT------GCG---------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGGGGC------------------TGG----------------------------------------AT----GGAAGTTGTTA-TGACAGTAGCTGTTCCTCTGATGCTATTTGCAGTTATATTGTT------ATGTCAGTCCTTGCT----GGCCATTT----------G
droGri2 scaffold_15252:12655405-12655601 + CAATTCGACAACGTTGCCATTGGCGAAGTGCAGTTGAGTTCCGGCTATAGGTGAGTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACTCCCCCCCGTTCTCCCCTC----CCATTCCAAGAGACTTATATGAAATCCTGATGATGATAA--------GCAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA------------CAGC---AATGAAATGCGGTTGGGGAAAATGGCTATTGGCAGCTCCTGTTCC--------TGTTTGCAGTTATAC------------------------------------------------
droWil2 scf2_1100000002648:854-1089 - TGATTTGTCGACGTGAGTGTTTATAAATT-CTGTAATGTTTTACATATATGTAACACCCA-----------------CACACACACACACATACATATATATGTATATAC--ACACAT--ATATATGCATATACACACACACACACACATACATA--TGCACATACG----------------------TACACTAATATACATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTATTA-TCCTTATTATTTTTTTTTT--ATTTATTTATAAATTTTTTTTTTGAGTGTTTTAAA--------ATTCTGCAATGT----------T
dp5 4_group3:1874358-1874659 - CAATTCGATAATGTGGCCATCGGTGAAGTTCAATTGAGTTCCGGCTATAGGTGAGTAAAACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGATAAGTTAACAAATGATGGAAATGGTGATCCACATAAGGGATTTGGGGTTCCCAGAGGCAGGAGGTAAATGCCTAGCCATAAAGTGGATGCCTTTTATG------------------GGTAACGCCATAAACTGGAACGACGA-ATAGCCGGCCAG-----GCTATGCGCCCATTAACA----GCTATCCGGCCAGCGTTTTG---------GTACAGTTTATCCCCGCAGC----------------------------------------------------------------AGGCAGCCCAGACAGCCAG----------AGTTGCCACAGAGCCATTT----------G
droPer2 scaffold_27:386243-386411 + ACACACA----------------------------------------------------------------------CACACACACACACACACA--------------C--ACACAC--ACACACACACACACACATATGCATATAAACAGATCTCGT------AT----------------------AACTCGTATAAC-------------------------------------------------T----------CCCCGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGTTGT----TGGAACCGCTG-CTGCTGCTTCAGCTGCTGC--TGCTGT-TGCAGCTACTCTTTC------TTGTT-GCTTT--------TGC----------------
droAna3 scaffold_12943:4397997-4398052 - CAGTTCGATAACGTGGCCATCGGCGATGTCCAGTTGAGTTCCGGCTATAGGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395973:615515-615571 - CAGTTCGATAACGTGGCCATTGGCGATGTGCAGTTGAGTTCCGGCTATAGGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302270:372652-372980 - CAGTTTGACAATGTGGCCATTGGTGAAGTGCAGTTGAGTTCCGGCTATAGGTGAGTAAT---GGACTTGAACAAACCAATACCCA-----GTCCC--------------A--ATCCCC--ATCCCCGTCCCCGTCCCAATGCCGAAA------------------------------------------------------------------------------------------------------------------------------------------------CCTGGCAATGATAA------TTGCGGGAATGGCAGCT---TTGAGGGAT---------------------GTTAAATG-CTGTCCATAAAGCGGATGTCCTTTATGTTCGTGTGTGTGTGTGTGTGTGGAGTCGTAAAGTGAAATGGGGGGATTCCCG--CAGCCTCCTCTATG---GCATTAACG----GTTATCC----------TTGCCTGACCAAGTACAGTTTATCCTGGCACC------------------------------------------------------------------------------------------GGCAGTTGGC----AGCCATTT----------G
droFic1 scf7180000453201:226102-226235 - CACAC---------------------------------------------------------------------------ACACACACACACAAC--------------CGTTCACACACACACACA--AACTCAC--CCCG----------------T------CC----------------------GATATGTGCAAC-------------------------------------------------T----------AACCCAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-T-TTGAGTGTGAAAATTGGCTT-------------------------------------------TCGCCCATTTTGAA--------ATTCTAAGCTGTTGATGGCGTCG
droEle1 scf7180000491006:345886-346002 - CACAC---------------------------------------------------------------------------ACACTCACACACACT--------------C--ACACAC--ACTCACACACACTCACACACACACACACAAC--------------------------------------AAAAATGGCA--------------------------------------------------------------------------------------------GGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGACG----CCAGCG------------------CCAGCGCCAACTG------------CAACCGAAAT------------------------------------------------------------------------------------------------CAAAAT----------C
droRho1 scf7180000779931:347-416 - GG-------------------------------------------------TAGGACAAACACAC-----------ACACACACCCACACACACC--------------C--ACACAC--ACCCACACACACCCACACACACACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302261:2500695-2500752 + CAATTCGATAACGTGGCCATCGGCGATGTGCAGTTGAGTTCCGGCTATAGGTGAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415874:350037-350094 + CAGTTCGATAACGTGGCCATCGGCGATGTGCAGTTGAGTTCCGGCTATAGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409554:1995841-1995912 - CAATTTGATAACGTGGCCATCGGCGACGTGCAGTTGAGTTCCGGCTATAGGTGAGTAAT---CGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTA--------------------------------------------------TC------------------------------------
dm3 chrX:5201658-5201801 - GTTCTAGCACAC----------------------------------------------------------------ACACACACACACACACACA--------------C--ACACAC--ACCCACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CACA--CACTTTCCATTATA---ACATTGATG----TTTGTGA----------TCGCGTTACGTTGTTCACCGCAGACATGCACA--------AT-AAGTTCTAT----TGAAA----------------------------------------------------------------------------------------------
droSim2 2l:3924404-3924461 + CAGTTCGATAACGTAGCCATCGGTGAAGTTCAGTTGAGTTCCGGCTATAGGTGAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_5:2173704-2173761 + CAGTTCGATAACGTAGCCATCGGTGAAGTGCAGTTGAGTTCCGGCTATAGGTGAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:20504899-20505015 + ACACCCA----------------------------------------------------------------------CACACACCCACACACACC--------------C--ACACAC--ACCCACACACACCCACACACGCACACACACAACTG--CGCACTTGCGGTTGGCATTGGGAATGGGATATCACTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCGCTG-CGC------------------------------------------------------------------------------------
droEre2 scaffold_4690:17455826-17456027 + ACACACACACAC----------------------------------------------------------------------ACACACACACACA--------------C--ACACAC--ACACACACCCGCACACACACAC----T------------------CC----------------------TGCAATGGCAGCCAGCCATAGGTTAGTTGCCAACTAACGGTAAATGCGCGCCAAGTGTCATTATCCTTT--------------------------------------TGG------------CTGGCACTCT------GTG----------------TCTCTGAG----------------------------TG-------TGTGTGTACGTGTGTGCGTGAGCTTGTGGCATATTAA-----------------CG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------CGCAACCT----------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAATTTGACAACGTAGCCATTGGTGAAGTGCAGTTGAGTTCCGGCTATAGGTAAGTAAAACCCGC-TCTAACAACCACACACACACACACACACC--------------C--ACACAC--ACCCACAGCCACTCACACTCGCTCATAAAAC--------------------------------------------------------------------------------------------------------------------------------------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGTGCGTCGGGC------------------CCGTAGTTAACTG------------CAGC---AATGAAAATCTGT----GGAAATTGCTG-TGCCAGTTCCTGTTCCTCT--TGCTGTTTGCAGTTATCCTGTT------ATGTCAGCCCT--------TGCCATTT----------GSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................AGTTGAGTTCCGGCTATAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................ATTGGTGAAGTGCAGTTGAGTTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................AACAACCACACACACACACACACACC--------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................ATTGGTGAAGTGCAGTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
...TTTGACAACGTAGCCATTGGTGAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
.....................GGTGAAGTGCAGTTGAGTTCCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
...TTTGACAACGTAGCCATTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
........................GAAGTGCAGTTGAGTTCCGGCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
...............GCCATTGGTGAAGTGCAGTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000001000000000000000000000000000000000000000000
.......................................................................CAACCACACACACACACACACACC--------------C--AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
.........................................................................ACCACACACACACACACACACC--------------C--A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171001000000000000000000000000000000000000000000000000000000000000
.....................................................................AACAACCACACACACACACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.101001000000000000000000000000000000000000000000000000000000000000
.....................................................................................CACACACACC--------------C--ACACAC--ACCCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.081000100000000000000000000000000000000000000000000000000000000000
........................................................................................ACACACC--------------C--ACACAC--ACCCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................CACACACACACACACC--------------C--ACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
CAGTTTGACAACGTGGCCATTGGCGAAGTGCAATTGAGTTCGGGCTACAGGTGAGTTAAATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACAGGTGCAATT------------------------------------AAATCATGATGA------------TGATGAAAAT------GCG---------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGGGGC------------------TGG----------------------------------------AT----GGAAGTTGTTA-TGACAGTAGCTGTTCCTCTGATGCTATTTGCAGTTATATTGTT------ATGTCAGTCCTTGCT----GGCCATTT----------GSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAATTCGACAACGTTGCCATTGGCGAAGTGCAGTTGAGTTCCGGCTATAGGTGAGTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACTCCCCCCCGTTCTCCCCTC----CCATTCCAAGAGACTTATATGAAATCCTGATGATGATAA--------GCAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA------------CAGC---AATGAAATGCGGTTGGGGAAAATGGCTATTGGCAGCTCCTGTTCC--------TGTTTGCAGTTATAC------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGATTTGTCGACGTGAGTGTTTATAAATT-CTGTAATGTTTTACATATATGTAACACCCA-----------------CACACACACACACATACATATATATGTATATAC--ACACAT--ATATATGCATATACACACACACACACACATACATA--TGCACATACG----------------------TACACTAATATACATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTATTA-TCCTTATTATTTTTTTTTT--ATTTATTTATAAATTTTTTTTTTGAGTGTTTTAAA--------ATTCTGCAATGT----------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
TGATTTGTCGACGTGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
........................................................CCCA-----------------CACACACACACACATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
dp5
CAATTCGATAATGTGGCCATCGGTGAAGTTCAATTGAGTTCCGGCTATAGGTGAGTAAAACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGATAAGTTAACAAATGATGGAAATGGTGATCCACATAAGGGATTTGGGGTTCCCAGAGGCAGGAGGTAAATGCCTAGCCATAAAGTGGATGCCTTTTATG------------------GGTAACGCCATAAACTGGAACGACGA-ATAGCCGGCCAG-----GCTATGCGCCCATTAACA----GCTATCCGGCCAGCGTTTTG---------GTACAGTTTATCCCCGCAGC----------------------------------------------------------------AGGCAGCCCAGACAGCCAG----------AGTTGCCACAGAGCCATTT----------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACACACA----------------------------------------------------------------------CACACACACACACACACA--------------C--ACACAC--ACACACACACACACACATATGCATATAAACAGATCTCGT------AT----------------------AACTCGTATAAC-------------------------------------------------T----------CCCCGACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGTTGT----TGGAACCGCTG-CTGCTGCTTCAGCTGCTGC--TGCTGT-TGCAGCTACTCTTTC------TTGTT-GCTTT--------TGC----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CAGTTCGATAACGTGGCCATCGGCGATGTCCAGTTGAGTTCCGGCTATAGGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................CCAGTTGAGTTCCGGCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......GATAACGTGGCCATCGGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
CAGTTCGATAACGTGGCCATTGGCGATGTGCAGTTGAGTTCCGGCTATAGGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGTTTGACAATGTGGCCATTGGTGAAGTGCAGTTGAGTTCCGGCTATAGGTGAGTAAT---GGACTTGAACAAACCAATACCCA-----GTCCC--------------A--ATCCCC--ATCCCCGTCCCCGTCCCAATGCCGAAA------------------------------------------------------------------------------------------------------------------------------------------------CCTGGCAATGATAA------TTGCGGGAATGGCAGCT---TTGAGGGAT---------------------GTTAAATG-CTGTCCATAAAGCGGATGTCCTTTATGTTCGTGTGTGTGTGTGTGTGTGGAGTCGTAAAGTGAAATGGGGGGATTCCCG--CAGCCTCCTCTATG---GCATTAACG----GTTATCC----------TTGCCTGACCAAGTACAGTTTATCCTGGCACC------------------------------------------------------------------------------------------GGCAGTTGGC----AGCCATTT----------GSizeHit CountTotal NormTotal
No Reads
droFic1
CACAC---------------------------------------------------------------------------ACACACACACACAAC--------------CGTTCACACACACACACA--AACTCAC--CCCG----------------T------CC----------------------GATATGTGCAAC-------------------------------------------------T----------AACCCAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-T-TTGAGTGTGAAAATTGGCTT-------------------------------------------TCGCCCATTTTGAA--------ATTCTAAGCTGTTGATGGCGTCGSizeHit CountTotal NormTotal
No Reads
droEle1
CACAC---------------------------------------------------------------------------ACACTCACACACACT--------------C--ACACAC--ACTCACACACACTCACACACACACACACAAC--------------------------------------AAAAATGGCA--------------------------------------------------------------------------------------------GGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGACG----CCAGCG------------------CCAGCGCCAACTG------------CAACCGAAAT------------------------------------------------------------------------------------------------CAAAAT----------CSizeHit CountTotal NormTotal
No Reads
droRho1
GG-------------------------------------------------TAGGACAAACACAC-----------ACACACACCCACACACACC--------------C--ACACAC--ACCCACACACACCCACACACACACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAATTCGATAACGTGGCCATCGGCGATGTGCAGTTGAGTTCCGGCTATAGGTGAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGTTCGATAACGTGGCCATCGGCGATGTGCAGTTGAGTTCCGGCTATAGGTAAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAATTTGATAACGTGGCCATCGGCGACGTGCAGTTGAGTTCCGGCTATAGGTGAGTAAT---CGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTA--------------------------------------------------TC------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GTTCTAGCACAC----------------------------------------------------------------ACACACACACACACACACA--------------C--ACACAC--ACCCACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CACA--CACTTTCCATTATA---ACATTGATG----TTTGTGA----------TCGCGTTACGTTGTTCACCGCAGACATGCACA--------AT-AAGTTCTAT----TGAAA----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA---ACATTGATG----TTTGTGA----------TCGCGT.....................................................................................................................................................26114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000020201200000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000400000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TTTGTGA----------TCGCGTTACGTTGTT............................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000040000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---ACATTGATG----TTTGTGA----------TCGCGT.....................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATG----TTTGTGA----------TCGCGTTACGT................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATG----TTTGTGA----------TCGCGTTACG.................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATG----TTTGTGA----------TCGCGTT....................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGA----------TCGCGTTACGTTGTTCACC........................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATG----TTTGTGA----------TCGC.......................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGATG----TTTGTGA----------TCGCGTTACGTTG..............................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTACGTTGTTCACCGCAGAC..................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTTACGTTGTTCACCGCAGACA.................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................CACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CACA--CA........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACATTGATG----TTTGTGA----------TCGCGT.....................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATG----TTTGTGA----------TCGCGTTACGTT...............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CACA--CACTTTCCATTATA---A........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCACCGCAGACATGCACA--------AT-AAGT............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCAGACATGCACA--------AT-AAGT............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTTGTTCACCGCAGACATGCACA--------A..................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGATG----TTTGTGA----------TCGA.......................................................................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAC--ACCCACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATG----TTTGTGA----------TCGCGTTACGTT...............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA---ACATTGATG----TTTGTGA----------TC.........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG----TTTGTGA----------TCGCGTTACGTTG..............................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGATG----TTTGTGA----------TCGCGTTACGT................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTACGTTGTTCACCGCA.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTATA---ACATTGATG----TTTGTGA----------...........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTTCCATTATA---ACATTGATG----TT..........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA----------TCGCGTTACGTTGTTCACCGCA.....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CCCACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CA..............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---ACATTGATG----TTTGTGA----------TC.........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCACCGCAGACATGCACA--------AT-AAGT............................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG----TTTGTGA----------TCGCGTTACGTTGTT............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTTCCATTATA---ACATTGA..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CACA--CACTTTCCAT................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TTTGTGA----------TCGCGTTACGTTGTTC...........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATA---ACATTGATG----TTTGTG......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CACA--CACT......................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CACA--C.........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---ACATTGATG----TTTGTGA----------TCGCGT.....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TTTGTGA----------TCGCGTTACGTTGTTCA..........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................CACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT....................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................ACCCACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CAC.............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TTTGTGA----------TCGCGTTACGTTGTTCA..........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ACACACACTCACTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAA-----------------CAC.............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................CACACACA--------------C--ACACAC--ACCCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................ACACACACA--------------C--ACACAC--ACCCACACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAGTTCGATAACGTAGCCATCGGTGAAGTTCAGTTGAGTTCCGGCTATAGGTGAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................TCGGTGAAGTTCAGTTGAGTTCCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
droSec2
CAGTTCGATAACGTAGCCATCGGTGAAGTGCAGTTGAGTTCCGGCTATAGGTGAGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......ATAACGTAGCCATCGGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..............AGCCATCGGTGAAGTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................AGTGCAGTTGAGTTCCGGCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
droYak3
ACACCCA----------------------------------------------------------------------CACACACCCACACACACC--------------C--ACACAC--ACCCACACACACCCACACACGCACACACACAACTG--CGCACTTGCGGTTGGCATTGGGAATGGGATATCACTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCGCTG-CGC------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ACACACACACAC----------------------------------------------------------------------ACACACACACACA--------------C--ACACAC--ACACACACCCGCACACACACAC----T------------------CC----------------------TGCAATGGCAGCCAGCCATAGGTTAGTTGCCAACTAACGGTAAATGCGCGCCAAGTGTCATTATCCTTT--------------------------------------TGG------------CTGGCACTCT------GTG----------------TCTCTGAG----------------------------TG-------TGTGTGTACGTGTGTGCGTGAGCTTGTGGCATATTAA-----------------CG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT--------CGCAACCT----------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/19/2015 at 04:30 PM