dvi_11052

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	-

Species	Coordinate	ID	Alignment
droVir3	scaffold_12963:9084928-9085178 -	dvi_11052	AACCACAAGACGGCAAACGCCGAGC---ACACCCAGAACACA------CGA-------------TACT--GCAGGT--AGGC--------TATATATATTCTTGATCAGCATCAATAGCCAAGTCGATGTAGCCATGTC-GTCTGTCTGTCCGT----TC----GTATGTATGAACGC-----AGGATCTCAGAACCTATAAGAGCTACAGACG--GAAATTTTAGCTGTAGGTCCTCCTAG---------TGTCTG-CGCAG-A--TCGACTTTGTTTCCGATATTCGA---TAACTTACTCCGTTTCCAA-----GC-AAT
droMoj3	scaffold_6540:1313820-1314074 +		GACTGCAAGATTGT---TACTAATT---ATACCCTGAACCCATTGAAAATGT-------------GAGGACCACAT--AAAG--------TATATATATTCTTGATCAGGGCGACGAGCTGAGTCGATTTGGCCCTGTCCGCCTGTCTGTCCG------------TATGTATGAACGCG----TCGATTTCAGAAGATATAAGAGCTAGAGACTT-CAAATTGTGTTTTTAAATGTCCGTAT---------ATACAG-CGCGG-ATATCGAATATATCACCAAAAATCGA---AAACTC-ATCCCGGTATTT------T-TAT
droGri2	scaffold_15126:6315414-6315630 +		GCAAAT---------GT---ATGAA---ACAGG---------------------------------CAGAACCCAT--AAGG--------TTTATTTATTCTTGATCAGGATCAACAGACGAGTCGATATT-----GTCCGTCTGTCCGTCCGT----CT----GTCTGAATGAACACA----CGGATCTCAGAGACTATAAGTACTAGAGACTT-AAAATTTGGCAAATAATTTTTTTGTA-T-------ACCAGG-CGCAA-A--TTAAGTT-GCTTTGATTTATCAA---TAACTG-TTCCCGTTT-------------C
droWil2	scf2_1100000004968:440444-440660 -		CGA-------------------------------------------------------------------CCCCAC-AAATA--------TATATATATTCTTGATCAGGATCAAAAACCGAGTCGATCTAGCCATGTCCGGCTGTCCGTCCGTCCGCCC----ATCCGTATGAACACC----TAGATCTCGGAGACTATAAGAGCTAGAGCCAC-CAAATTTGGTATGCAGTCTCGTGTAG---------TATGTA-CGCTT-A--TCGAGTTTGTTTCAAATTTTTGCC--ACGCCCCCTTCCGCCCCCA------GAATT
dp5	Unknown_group_298:5089-5298 -		ACAGTC---------AG------AAAAA-------------------GCGTT-------------TCTGACCTCAT--AAAG--------TATATATATTCTTAATAAGCATCAATACCCCAGTCGATGT--CTGTGTCTGTCTGTCCGTCCGT----CC----GTCTTGTTTGACGCC----TAGCTCTCAAAAACTATAAAAGCTAGTGCAAT-CAAATTTTGTGTGGAGACTCCTGTGA---------TGT-CA-CGCAGAA--TCAAGTTTGCTTAAAACTTTTTCC--AAG--------------------------C
droPer2	scaffold_162:76953-77175 -		ACACCC---------AGA--AGGAA----------------------GCATT-------------GCCGACACCAT--ATAGTATATACATATACCCATTTGTGATCAGTATCAATAGCCGAGTCGATATAGCCATGTCTTACTGTCTATCTGT----CC----GTCT-------------------TCTTAGAACCTGTAAGAGCTAAAACAAC-CAAATTTTTTGTGTGGGCTCCAGATA---------T-CACA-C-TTG-A--TCAAGTTTGTTTCAAAATTTTGCC--ACACCCCCTTCCGCCCTCA------CAA-A
droAna3	scaffold_13082:2889325-2889500 -		-------------------------------------------------------------------------------------------ATATACATTCTTGATAAGCATGAACAGCCGAGTTAATATGCCCATGTCAGTTTGTC--------------------TCTGTGAACGCG----TGGATCTCAGAGTCTATAAAAGATAGAGATAT-AAGATTTTGCACGAAGACTCCTGTGA---------ATGAAG-CGCAG-G--TCAAGCTTGTTTTAAATTCTTGC---------TCTTTACCGTCTC------CA---
droBip1	scf7180000395455:14518-14735 -		ACGGCA---------GACCCCAGAC---CCTGA---------------------------------CAAATTCCAT--ATAG--------TATATATATTCTTGATCAGCATCAACAGCCAATTCGATATAGCTATTCCCGTCTGTC--------------------CGTATGCACGCG----TGGATCTGGGAGTCTTTATAAGATAGAGCTAT-AGGATTTGGCATGAAGACTCTAT-AA---------TGCCCA-TGCAG-T--TTAAGTTCGATTCAAATTTTTGCC--ACGCCCCCTTCCGTCC---------CATGC
droKik1	scf7180000302787:1982-2163 -		------------------------------------------------------------------------------------------TACATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTTT--------------------CTACGCAAACTAGTCCCTCA----GTTTTAAAGCTATCTGAAT-GAAACTTTGCATATAGTCTTCTATATACTCT-CACTG-CTGCCGGAT-C--GGACGACTATATCATATAGCTCCC--------------------ATACAAAT-GAT
droFic1	scf7180000454040:680223-680408 -		------------------------------------------------------------------------------------------TATGTATATTCTTGATCAGGATCAACCGACGAGTCAATCTAT----GTCTGTCTATCTCTC-ATCTATTC----GTCCGTATAAAAGTC----GAGCTCTCGCCAATTATAGGAACTCAAATATT-GAAATTCAAAATGTAGATATGTACTT----TTTG-TTCGTA-CGCAG-T--CCAAGTTTGATAAA--T------T--------------ACGCCCACA-AAAC-AAT
droEle1	scf7180000490073:15426-15618 -		---------------------------------------------------------------------------------------------ATATATTCTTGATCAGGATCAATACCCGACTGGATCTAGCCATCCCTGTCTGTCTGTCCG------------TCTGTATGAGCGTC----GAGGTCTCGGAAACTATAAAAGCTAGAGATTTCGGAATTTGACATGCAGGTTCTAGTAA---------TTCCTA-CGCAG-C--GTAATTTTATTTCAAAACAGAGCG--ACTTCCACTCTAACGCCGA------CAAAT
droRho1	scf7180000779509:403568-403784 -		CGA-------------------------------------------------------------------CACTAT--AAAGTA------TATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCTGTCC----GTCCGTATGAACGCT----GAGATCTCGGAAACTATAAAAGCTAGAAGATT-GGCATTTTGCATGCAGATTCTAGGAG---------TTCCTA-CGCAG-C--ACAAGTTTGTTTCAAAAAGGTGCC--ACGCCCCCTTTAACGCCCA------CA-AT
droBia1	scf7180000302087:235380-235580 +		---------------------------------------------------------------------------T--AAGG--------TATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCAATGTCCGTATGTCCGTCCG------------TCCGTATGAACGCT----GAGATCTCAGAAACAATAAGAGCTAGGACAGT-CAGTCTTGGCATGCAGATTCCTGGGC---------TTTCTA-CGTAG-C--GCTAGTTTGTTTCAGTGGGGTTCCACACACCCACTCAAACTCATA------CA-AT
droTak1	scf7180000415152:2102-2304 -		---------------------------------------------------------------------------T--AAAC--------TATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGT----CT----GTCTGTATGAACGCT----GAGATCTCGGAAACTATAAAAGCTAGAAGATT-GACATTTTGCATGCAGATTCTAGGAG---------TTCCTA-CGCAG-C--GCAAGTTTGTTTCAAAAGGGTGCC--ACGCCCCCTCCAACGCCCA------CA-AT
droEug1	scf7180000409030:13884-14128 -		CCAGGC---------ACC--CCGAA----------------------GCAGGACCGTTACATGGTAGT--AACGGT--AAAG--------TATATTTATTCTTAATCAGGATGAATAGCGAAGACGATTGAGCCATGACCGTCTGTCTGTCCGTCTGTCCTTCTGTTCGTATGAACGCT----GAGATCTTAGGAACTATAAAAAATAAAAAGTT-GAGGTTGACCGTGAAGATTTTTGAGG---------TCCCTA-CGCAG-C--GCAAGTTTATTACA-------GCG--ACGCCCACTCTAACGCCCA------CAAAT
dm3	chr2R:1411830-1412033 -		AAAGTA---------TG------AAACA--------------------------------------------------GCAG--------TATATATGTTCTTGATCCGGATCAATAGCCGAGTCGATCTAGCCATGTCTGTCTGTC--------------------CGTATGAACGTC----TCGCTCTTAGGATCTAAAACAGCTAGAATGTT-GAGATTAAGCTTGCAGCTTCCATACC---------CATACA-CGCAG-C--GCAAGTTTCTTTCCAACTCTTGCC--ACGCCCACTCTAACATTTG------CAAGT
droSim2	node_111346:5538-5733 +		CTA----------------------------------------------------------------------TAT--ACAGTA------TATATATATTCTTGATCAGGAACAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTC--------------------CGTATCAACGTC----GAGATCTCCGGAACTATAAAAGCTAGAAGGTT-GAGATTCAGCATACAGATTCTAGAGA---------CATAGA-CTTAG-A--TCAAGTTTGTTGACACATGTTGCC--ATGCCCACACT---TTTGA-----AC-CAT
droSec2	scaffold_55:68440-68627 +		------------------------------------------------------------------------------------------TATATATATTCTTGATCAGGATCAATAACCGAGTCCAACTGGCCATGTCAGTATGTCCGTCCGT----CT----GTCCGTATGAACGTT----GAGATCTCAGGAACTATAAAAACTATAAGGTT-GAGATTCAGCATACAGATTCTGGAGA---------CATAGA-C------------GTTTTTTGCC--ATGTTGTC--ACACCCACTCTAACGCCGA------CAAAC
droYak3	4:609201-609398 +		CAA-----------------------------------------------------------------------AT--AATG--------TATATATATTCTCCATCAGGATCAATAGCCGAGTCGATCTGTCTATGCCCGTCTGTCCCTCCG------------GCCGTATGAGCGTC----GAGATTTCAGGAACTATTGAAGCTAGAAAGTT-GAGATTAAGCATGCAGACTCCAGAGT----------------CGCAG-C--GCAAGTTTGTTAACCCATGTTGCC--ACACCCACCCTAACTCCCA------CAAAC
droEre2	scaffold_4929:23576348-23576584 +		ACACCA---------GTCGACGAGC---CCAGCCGGAGAATATTC--GCGTGAGCCCT-------A----CACCATATAAAG--------TATATATATTCTTGATCAGGAACAGTAGCCGAGTCGATCTGGCCATGACCGTCTGCC--------------------CGTATGAGCGCC----TCAATCTCAGGAACTGCAAAAGCTAGA--------GATTAAGCATGCAGCTTCCAGAGA---------CACAGA-CGCAG-C--GCAAGTTTGTTTCCAAATGTTGCC--ACGCCCACTCCAACGCCAA------CAAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AACCACAAGACGGCAAACGCCGAGC---ACACCCAGAACACA------CGA-------------TACT--GCAGGT--AGGC--------TATATATATTCTTGATCAGCATCAATAGCCAAGTCGATGTAGCCATGTC-GTCTGTCTGTCCGT----TC----GTATGTATGAACGC-----AGGATCTCAGAACCTATAAGAGCTACAGACG--GAAATTTTAGCTGTAGGTCCTCCTAG---------TGTCTG-CGCAG-A--TCGACTTTGTTTCCGATATTCGA---TAACTTACTCCGTTTCCAA-----GC-AAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................TCCTAG---------TGTCTG-CGCAG-A--TCGACT..................................................	24	2	1.50	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACAAGACGGCAAACGCCGAGC---A......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAGACGGCAAACGCCGAGC---AC.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTCCTAG---------TGTCTG-CGCAG-A--TCGACT..................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................ATATTCTTGATCAGCATCAATA..............................................................................................................................................................................................................	22	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GAAATTTTAGCTGTAGGTCCTCCTAG---------........................................................................	26	16	0.13	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TG-CGCAG-A--TCGACTTTGTTTC...........................................	21	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTTTAGCTGTAGGTCCTCCTAG---------TG......................................................................	24	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TCTTGATCAGCATCAATAGCCAAGTCG.....................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TG-CGCAG-A--TCGACTTTGTT.............................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATATATTCTTGATCAGCATCAATAGCC...........................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGAACCTATAAGAGCTACAGA...............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTAG---------TGTCTG-CGCAG-A--TC......................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CTCAGAACCTATAAGAGCTA...................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTTTAGCTGTAGGTCCTCCTA..................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TTCTTGATCAGCATCAATAGCCAAG........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTAG---------TGTCTG-CGCAG-A--TCGA....................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTTAGCTGTAGGTCCTCCTAG---------........................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTAG---------TGTCTG-CGCAG-A--T.......................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TTCTTGATCAGCATCAATAGCCAAGTC......................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GATCAGCATCAATAGCCAAGTCGAT...................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AGGATCTCAGAACCTATAAGAG......................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TATATTCTTGATCAGCATCAATAGCCA..........................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AATTTTAGCTGTAGGTCCTCC....................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GACTGCAAGATTGT---TACTAATT---ATACCCTGAACCCATTGAAAATGT-------------GAGGACCACAT--AAAG--------TATATATATTCTTGATCAGGGCGACGAGCTGAGTCGATTTGGCCCTGTCCGCCTGTCTGTCCG------------TATGTATGAACGCG----TCGATTTCAGAAGATATAAGAGCTAGAGACTT-CAAATTGTGTTTTTAAATGTCCGTAT---------ATACAG-CGCGG-ATATCGAATATATCACCAAAAATCGA---AAACTC-ATCCCGGTATTT------T-TAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................ATCACCAAAAATCGA---AAACTC-ATCCCGG................	28	2	1.50	3	3	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ATCACCAAAAATCGA---AAACTC-ATC....................	24	2	1.00	2	2	0	0	0	0	0
................................................................................................TATTCTTGATCAGGGCGACGA..............................................................................................................................................................................................................	21	20	0.75	15	15	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CACCAAAAATCGA---AAACTC-ATCC...................	23	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CACCAAAAATCGA---AAACTC-ATCCCA.................	25	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TATCACCAAAAATCGA---AAACTC-ATCCCGG................	29	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ATCACCAAAAATCGA---AAAC..........................	19	2	0.50	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................ATCACCAAAAATCGA---AAACTC-ATCCCA.................	27	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................TGAGTCGATTTGGCCCTGTCCGC.....................................................................................................................................................................................	23	5	0.20	1	1	0	0	0	0	0
......................................................................................................................CTGAGTCGATTTGGCCCTGTCCGC.....................................................................................................................................................................................	24	5	0.20	1	0	0	0	0	1	0
...............................................................................................................................................TGTCTGTCCG------------TATGTATGAACGCG----TC..........................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
..................................................................................................TTCTTGATCAGGGCGACGAGCTGAGT.......................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.........................................................................................................TCAGGGCGACGAGCTGAGTCGATTTGG...............................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................TAT---------ATACAG-CGCGG-ATATCGA....................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................ATCAGGGCGACGAGCTGAGTCGATTT.................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................TATGAACGCG----TCGATTTCAGAAGA..............................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droGri2

GCAAAT---------GT---ATGAA---ACAGG---------------------------------CAGAACCCAT--AAGG--------TTTATTTATTCTTGATCAGGATCAACAGACGAGTCGATATT-----GTCCGTCTGTCCGTCCGT----CT----GTCTGAATGAACACA----CGGATCTCAGAGACTATAAGTACTAGAGACTT-AAAATTTGGCAAATAATTTTTTTGTA-T-------ACCAGG-CGCAA-A--TTAAGTT-GCTTTGATTTATCAA---TAACTG-TTCCCGTTT-------------C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CGA-------------------------------------------------------------------CCCCAC-AAATA--------TATATATATTCTTGATCAGGATCAAAAACCGAGTCGATCTAGCCATGTCCGGCTGTCCGTCCGTCCGCCC----ATCCGTATGAACACC----TAGATCTCGGAGACTATAAGAGCTAGAGCCAC-CAAATTTGGTATGCAGTCTCGTGTAG---------TATGTA-CGCTT-A--TCGAGTTTGTTTCAAATTTTTGCC--ACGCCCCCTTCCGCCCCCA------GAATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................GCTGTCCGTCCGTCCGCCC----...............................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................CGCCC----ATCCGTATGAACACC----TAGATCT.....................................................................................................................................	27	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................GAACACC----TAGATCTCGGAGACT.............................................................................................................................	22	20	0.40	8	8	0	0	0	0
..........................................................................................................................................................................................ATCTCGGAGACTATAAGAGCT....................................................................................................................	21	20	0.25	5	0	5	0	0	0
.......................................................................................................................................................................................................TAAGAGCTAGAGCCAC-CAAATTTGG..................................................................................................	25	20	0.10	2	2	0	0	0	0
.........................................................................................................TCAGGATCAAAAACCGAGTCGATCT.................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................AGACTATAAGAGCTAGAGCCA.............................................................................................................	21	20	0.05	1	1	0	0	0	0
....................................................................................................................................................................................................................CAC-CAAATTTGGTATGCAGTCTCGT.....................................................................................	25	20	0.05	1	0	1	0	0	0

dp5

ACAGTC---------AG------AAAAA-------------------GCGTT-------------TCTGACCTCAT--AAAG--------TATATATATTCTTAATAAGCATCAATACCCCAGTCGATGT--CTGTGTCTGTCTGTCCGTCCGT----CC----GTCTTGTTTGACGCC----TAGCTCTCAAAAACTATAAAAGCTAGTGCAAT-CAAATTTTGTGTGGAGACTCCTGTGA---------TGT-CA-CGCAGAA--TCAAGTTTGCTTAAAACTTTTTCC--AAG--------------------------C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................TCTGTCCGTCCGT----CC----GTCTT..........................................................................................................................................................	20	6	0.67	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCAAAAACTATAAAAGCTAG..................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CTGTCCGTCCGT----CC----GTCTT..........................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACACCC---------AGA--AGGAA----------------------GCATT-------------GCCGACACCAT--ATAGTATATACATATACCCATTTGTGATCAGTATCAATAGCCGAGTCGATATAGCCATGTCTTACTGTCTATCTGT----CC----GTCT-------------------TCTTAGAACCTGTAAGAGCTAAAACAAC-CAAATTTTTTGTGTGGGCTCCAGATA---------T-CACA-C-TTG-A--TCAAGTTTGTTTCAAAATTTTGCC--ACACCCCCTTCCGCCCTCA------CAA-A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................CTATCTGT----CC----GTCT-------------------TCTTAGAACCT.............................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
......................................................................................................................................................................................................GTAAGAGCTAAAACAAC-CAAATTTTTTGT...............................................................................................	29	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................CT-------------------TCTTAGAACCTGTAAGAGCT....................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................GTGATCAGTATCAATAGCCGAGTCG.....................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................TTTGTTTCAAAATTTTGCC--ACACCCCCT.....................	28	17	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................TGTTTCAAAATTTTGCC--ACACCCCCT.....................	26	17	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................TGTTTCAAAATTTTGCC--ACACCC........................	23	19	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................TTTTGCC--ACACCCCCTTCCGC................	21	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................TCAAAATTTTGCC--ACACCCCCTTCCGCC...............	28	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTTGCC--ACACCCCCTTCCGCC...............	21	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................TGTTTCAAAATTTTGCC--ACACC.........................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................TCAAAATTTTGCC--ACACCCCCTTCC..................	25	20	0.05	1	0	1	0	0	0	0
...................................................................................................................TAGCCGAGTCGATATAGCCATGT.........................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................TGTTTCAAAATTTTGCC--ACAC..........................	21	20	0.05	1	0	1	0	0	0	0

droAna3

-------------------------------------------------------------------------------------------ATATACATTCTTGATAAGCATGAACAGCCGAGTTAATATGCCCATGTCAGTTTGTC--------------------TCTGTGAACGCG----TGGATCTCAGAGTCTATAAAAGATAGAGATAT-AAGATTTTGCACGAAGACTCCTGTGA---------ATGAAG-CGCAG-G--TCAAGCTTGTTTTAAATTCTTGC---------TCTTTACCGTCTC------CA---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ACGGCA---------GACCCCAGAC---CCTGA---------------------------------CAAATTCCAT--ATAG--------TATATATATTCTTGATCAGCATCAACAGCCAATTCGATATAGCTATTCCCGTCTGTC--------------------CGTATGCACGCG----TGGATCTGGGAGTCTTTATAAGATAGAGCTAT-AGGATTTGGCATGAAGACTCTAT-AA---------TGCCCA-TGCAG-T--TTAAGTTCGATTCAAATTTTTGCC--ACGCCCCCTTCCGTCC---------CATGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

------------------------------------------------------------------------------------------TACATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTTT--------------------CTACGCAAACTAGTCCCTCA----GTTTTAAAGCTATCTGAAT-GAAACTTTGCATATAGTCTTCTATATACTCT-CACTG-CTGCCGGAT-C--GGACGACTATATCATATAGCTCCC--------------------ATACAAAT-GAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

------------------------------------------------------------------------------------------TATGTATATTCTTGATCAGGATCAACCGACGAGTCAATCTAT----GTCTGTCTATCTCTC-ATCTATTC----GTCCGTATAAAAGTC----GAGCTCTCGCCAATTATAGGAACTCAAATATT-GAAATTCAAAATGTAGATATGTACTT----TTTG-TTCGTA-CGCAG-T--CCAAGTTTGATAAA--T------T--------------ACGCCCACA-AAAC-AAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------------------------------------------------------------------------------------ATATATTCTTGATCAGGATCAATACCCGACTGGATCTAGCCATCCCTGTCTGTCTGTCCG------------TCTGTATGAGCGTC----GAGGTCTCGGAAACTATAAAAGCTAGAGATTTCGGAATTTGACATGCAGGTTCTAGTAA---------TTCCTA-CGCAG-C--GTAATTTTATTTCAAAACAGAGCG--ACTTCCACTCTAACGCCGA------CAAAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGA-------------------------------------------------------------------CACTAT--AAAGTA------TATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCTGTCC----GTCCGTATGAACGCT----GAGATCTCGGAAACTATAAAAGCTAGAAGATT-GGCATTTTGCATGCAGATTCTAGGAG---------TTCCTA-CGCAG-C--ACAAGTTTGTTTCAAAAAGGTGCC--ACGCCCCCTTTAACGCCCA------CA-AT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

---------------------------------------------------------------------------T--AAGG--------TATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCAATGTCCGTATGTCCGTCCG------------TCCGTATGAACGCT----GAGATCTCAGAAACAATAAGAGCTAGGACAGT-CAGTCTTGGCATGCAGATTCCTGGGC---------TTTCTA-CGTAG-C--GCTAGTTTGTTTCAGTGGGGTTCCACACACCCACTCAAACTCATA------CA-AT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

---------------------------------------------------------------------------T--AAAC--------TATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGT----CT----GTCTGTATGAACGCT----GAGATCTCGGAAACTATAAAAGCTAGAAGATT-GACATTTTGCATGCAGATTCTAGGAG---------TTCCTA-CGCAG-C--GCAAGTTTGTTTCAAAAGGGTGCC--ACGCCCCCTCCAACGCCCA------CA-AT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCAGGC---------ACC--CCGAA----------------------GCAGGACCGTTACATGGTAGT--AACGGT--AAAG--------TATATTTATTCTTAATCAGGATGAATAGCGAAGACGATTGAGCCATGACCGTCTGTCTGTCCGTCTGTCCTTCTGTTCGTATGAACGCT----GAGATCTTAGGAACTATAAAAAATAAAAAGTT-GAGGTTGACCGTGAAGATTTTTGAGG---------TCCCTA-CGCAG-C--GCAAGTTTATTACA-------GCG--ACGCCCACTCTAACGCCCA------CAAAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAAGTA---------TG------AAACA--------------------------------------------------GCAG--------TATATATGTTCTTGATCCGGATCAATAGCCGAGTCGATCTAGCCATGTCTGTCTGTC--------------------CGTATGAACGTC----TCGCTCTTAGGATCTAAAACAGCTAGAATGTT-GAGATTAAGCTTGCAGCTTCCATACC---------CATACA-CGCAG-C--GCAAGTTTCTTTCCAACTCTTGCC--ACGCCCACTCTAACATTTG------CAAGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................TC--------------------CGTATGAACGTC----TCGCTCTTAGGA................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TC----TCGCTCTTAGGATCTAAAACAGC.....................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCTGTC--------------------CGTATGAACGTC----TCGCTCTT....................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................GCCGAGTCGATCTAGCCATGT.........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTC........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCAT...........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ATCAATAGCCGAGTCGATCTAG...............................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................TCAATAGCCGAGTCGATCTAGCC.............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CTA----------------------------------------------------------------------TAT--ACAGTA------TATATATATTCTTGATCAGGAACAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTC--------------------CGTATCAACGTC----GAGATCTCCGGAACTATAAAAGCTAGAAGGTT-GAGATTCAGCATACAGATTCTAGAGA---------CATAGA-CTTAG-A--TCAAGTTTGTTGACACATGTTGCC--ATGCCCACACT---TTTGA-----AC-CAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................C----GAGATCTCCGGAACTATAAAAGCT....................................................................................................................	25	5	7.20	36	0	0	3	0	0	0	19	3	6	3	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCTAGAGA---------CATAGA-CTTAG-A--TCAAGTT.................................................	27	1	6.00	6	0	0	0	0	0	0	5	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CATA....................................................................	26	20	5.60	112	0	0	0	0	0	0	1	7	0	0	35	0	64	5	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGTCCGTCT...................................................................................................................................................................................	25	20	5.15	103	0	0	4	0	0	0	0	2	0	0	97	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAG....................................................................................	19	20	4.25	85	0	0	0	0	85	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAGGAACAATAGCCGAGTCGATCTA................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0
.................................................................................GTA------TATATATATTCTTGATCAGGAAC..................................................................................................................................................................................................................	26	1	4.00	4	0	0	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CAT.....................................................................	25	20	3.40	68	0	0	1	1	16	0	0	0	0	0	11	1	27	11	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CA......................................................................	24	20	2.25	45	0	0	0	0	0	0	0	31	14	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TGTTGCC--ATGCCCACACT---TTTGA-----AC-...	25	1	2.00	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................C----GAGATCTCCGGAACTATAAAAGC.....................................................................................................................	24	5	2.00	10	0	0	0	0	0	0	5	3	1	1	0	0	0	0	0	0	0
...........................................................................................................................................CGTCTGTC--------------------CGTATCAACGTC----GAGATC......................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAGG..............................................................................................................	23	2	2.00	4	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0
..........................................................................................................CAGGAACAATAGCCGAGTCGATCTAGC..............................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CGTATCAACGTC----GAGATCTCCGGAAC..............................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GTA------TATATATATTCTTGATCAGGAACA.................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAGCCAT...........................................................................................................................................................................................	24	20	1.85	37	0	0	1	1	0	0	0	2	0	2	22	0	9	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------C.......................................................................	23	20	1.50	30	0	0	0	0	0	0	0	1	0	0	17	0	12	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAGGT.............................................................................................................	24	2	1.50	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTG..................................................................................................................................................................................	26	20	1.15	23	0	0	1	5	0	0	0	0	0	0	17	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAGAGA---------CATAGA-CTTAG-A--TC......................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................GTA------TATATATATTCTTGATCAGGAACT.................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GGAACAATAGCCGAGTCGATCTAGC..............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CAAGTTTGTTGACACATGTTGCC--ATGC..........................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GTA------TATATATATTCTTGATCAGGAA...................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCTAGAGA---------CATAGA-CTTAG-A--TCAAGT..................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAGAGA---------CATAGA-CTTAG-A--TCAAGTT.................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTAG-A--TCAAGTTTGTTGACACATG.....................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................TGTC--------------------CGTATCAACGTC----GAGATCTCCGGA................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................TAGA-CTTAG-A--TCAAGTTTGTTGACACA.......................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCTAGAGA---------CATAGA-CTTAG-A--T.......................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................TCTTGATCAGGAACAATAGCCGAGT.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................TC--------------------CGTATCAACGTC----GAGATCTCCGGAAC..............................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAGGTT-GAGA.......................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTAGAGA---------CATAGA-CTTAG-A--TCAAGTT.................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TC--------------------CGTATCAACGTC----GAGATCTCCGGAA...............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................TATATTCTTGATCAGGAACAATAGCCGAGT.......................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCATGTC........................................................................................................................................................................................	24	20	0.95	19	0	0	0	0	0	0	3	3	0	3	10	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGTCCGT.....................................................................................................................................................................................	23	20	0.85	17	0	0	0	3	0	0	0	0	0	1	13	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CATAGA-.................................................................	28	12	0.75	9	0	0	0	3	0	0	0	1	0	0	0	0	4	1	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CATAG...................................................................	27	16	0.69	11	0	0	0	1	0	0	1	0	0	0	4	0	4	1	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCG......................................................................................................................................................................................	26	20	0.65	13	0	0	0	0	0	0	1	0	8	0	4	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTC....................................................................................................................................................................................	26	20	0.65	13	0	0	0	0	0	0	0	0	1	0	11	1	0	0	0	0	0
...............................................................................................................................TCTAGCCATGTCCGTCTGTC--------------------CGTA........................................................................................................................................................	24	20	0.65	13	0	0	1	0	0	0	4	3	1	2	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TCTAGAGA---------CATAGA-CT...............................................................	16	5	0.60	3	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0
.................................................................................................................................................................................TC----GAGATCTCCGGAACTATAAAAGCT....................................................................................................................	26	5	0.60	3	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------........................................................................	22	20	0.60	12	0	0	0	0	0	0	8	3	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATACAGATTCTAGAGA---------CA......................................................................	18	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
.........................................................................................................................................................................................GATCTCCGGAACTATAAAAGCTAGAAGGT.............................................................................................................	29	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAGGTT-...........................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCCGGAACTATAAAAGCTAGAAGGTT-...........................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAGGTT-G..........................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................CGGAACTATAAAAGCTAGAAGGTT-GAG........................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................CAGGAACAATAGCCGAGTCGATC..................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCTCCGGAACTATAAAAGCTAGAAGGT.............................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAGCCATGT.........................................................................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	7	0	2	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTC........................................................................................................................................................................................	22	20	0.40	8	0	0	0	0	0	0	0	6	0	0	2	0	0	0	0	0	0
....................................................................................................................AGCCGAGTCGATCTAGCCATGTCCGTC....................................................................................................................................................................................	27	20	0.40	8	0	0	0	1	0	0	1	1	0	0	5	0	0	0	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACAGATTCTAGAGA---------........................................................................	27	20	0.40	8	0	0	0	0	0	0	0	0	4	4	0	0	0	0	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACAGATTCTAGAGA---------C.......................................................................	28	20	0.35	7	0	0	0	0	0	0	5	0	0	0	0	0	0	2	0	0	0
.............................................................................................................................GATCTAGCCATGTCCGTCTGTC--------------------CGTA........................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	2	2	1	2	0	0	0	0	0	0	0
..................................................................................................................................................................................C----GAGATCTCCGGAACTATAAAAGCTA...................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAG...............................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCAT...........................................................................................................................................................................................	19	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CATAGA-C................................................................	29	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACAGATTCTAGA...................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTCCGT.....................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	2	0	0	3	0	1	0	0	0	0
..........................................................................................................................GTCGATCTAGCCATGTCCGTCTGTC--------------------............................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
.................................................................................................................................TAGCCATGTCCGTCTGTC--------------------CGTA........................................................................................................................................................	22	20	0.30	6	0	0	0	0	0	0	1	2	1	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................GATCTCCGGAACTATAAAAG......................................................................................................................	20	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................GATCTCCGGAACTATAAAAGCTAGA.................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACAGA..........................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0
........................................................................................................................GAGTCGATCTAGCCATGTC........................................................................................................................................................................................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTT..................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGTCCGTC....................................................................................................................................................................................	24	20	0.25	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAGGTT-T..........................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................AACGTC----GAGATCTCCGGAACT.............................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................AATAGCCGAGTCGATCTAGCCATGTC........................................................................................................................................................................................	26	20	0.25	5	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCGTC....................................................................................................................................................................................	28	20	0.25	5	0	0	0	0	0	0	1	2	1	0	1	0	0	0	0	0	0
...........................................................................................................................TCGATCTAGCCATGTCCGTCTGTC--------------------CG..........................................................................................................................................................	26	20	0.25	5	0	0	2	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................GAGTCGATCTAGCCATGTCCGTCT...................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATACAGATTCTAGAGA---------C.......................................................................	17	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCATACAGATTCTAGAGA---------CATAGA-CT...............................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCGT.....................................................................................................................................................................................	27	20	0.25	5	0	0	2	0	0	0	0	0	1	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................GATTCAGCATACAGATTCTAGAGA---------........................................................................	24	20	0.20	4	0	0	0	0	0	0	1	2	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TTCTAGAGA---------CATAGA-CT...............................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................TAGAAGGTT-GAGATTCAGCATACAGA..........................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TACAGATTCTAGAGA---------CATA....................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.........................................................................................................................................................................................GATCTCCGGAACTATAAAAGCT....................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................CCGGAACTATAAAAGCTAGAAGT..............................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................GAGTCGATCTAGCCATG..........................................................................................................................................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAGCATACAGATTCTAGAGA---------CATA....................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................ACAGATTCTAGAGA---------CATAGA-.................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................................................................................................................................................................................................GGAACTATAAAAGCTAGAAGGTT-GAGA.......................................................................................................	27	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCATGTCC.......................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................................................................................................................................................................TAAAAGCTAGAAGGTT-GAGATT.....................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................................................................................................................................................................TAGAAGGTT-GAGATTCAGCATACAG...........................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................AGCCGAGTCGATCTAGCCATGTCCGT.....................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCATG..........................................................................................................................................................................................	22	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AACTATAAAAGCTAGAAGGTT-GAGA.......................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CATT....................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..............................................................................................................................................................................................................................CAGCATACAGATTCTAGAGA---------CATA....................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................TCTAGCCATGTCCGTCTGTC--------------------CG..........................................................................................................................................................	22	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................TATAAAAGCTAGAAGGTT-G..........................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGT.........................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGCTAGAAGGTT-GAGATT.....................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................TATAAAAGCTAGAAGGTT-GAGA.......................................................................................................	22	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAGCCATGTCC.......................................................................................................................................................................................	28	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AGCCGAGTCGATCTAGCC.............................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACAGATTCTAGAGA---------CA......................................................................	29	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
............................................................................................................................CGATCTAGCCATGTCCGTCTGTC--------------------CGT.........................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACAGATTCTAGAG..................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAGCCATG..........................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TCGATCTAGCCATGTCCGTCTGTC--------------------............................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGTCCG......................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................AACTATAAAAGCTAGAAGGTT-GAG........................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCATGT.........................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GAGATTCAGCATACAGATTCTAGAGA---------........................................................................	26	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATACAGATTCTAGAGA---------CATAG...................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................GTT-GAGATTCAGCATACAGA..........................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................GTCGATCTAGCCATGTCCGTCTG..................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATACAGATTCTAGAGA---------CATA....................................................................	20	20	0.10	2	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCC.............................................................................................................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................TCGATCTAGCCATGTCCGTCTGTC--------------------CGTA........................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................CTAGCCATGTCCGTCT...................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................GAGATTCAGCATACAGATTCTAGAGA---------C.......................................................................	27	20	0.10	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................CGATCTAGCCATGTCCGTCTGTC--------------------CG..........................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGCTAGAAGGTT-GAGATTCAGCA................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................TGTCCGTCTGTC--------------------CGTATCAACGTA----T...........................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCATACAGATTCTAGAGA---------CATAGA-C................................................................	27	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................TATATTCTTGATCAGGAACAG................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TAGCCATGTCCGTCT...................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................GAACTATAAAAGCTAGAAGGTT-GAG........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTCC.......................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................GATTCAGCATACAGATTCTAGAGA---------CA......................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AAAAGCTAGAAGGTT-GAGATT.....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACAG...........................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................AGTCGATCTAGCCATGTCCGTC....................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................TAGAAGGTT-GAGATTCAGCATACAGATT........................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TT-GAGATTCAGCATACAGATTCTAGAGA---------........................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................AGCCGAGTCGATCTAGCCATG..........................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GTT-GAGATTCAGCATA..............................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................GTCGATCTAGCCATGTCCGTCTGT.................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAGCCATGG.........................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATT........................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................ATAAAAGCTAGAAGGTT-...........................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................ATAAAAGCTAGAAGGTT-GAGATTCA...................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAGCCATGTCCGTCTGTC--------------------CGT.........................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................T-GAGATTCAGCATACA............................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................GTCGATCTAGCCATGTCCGT.....................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TAAAAGCTAGAAGGTT-GAGAT......................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AACTATAAAAGCTAGAAGGTT-GA.........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAGCATACAGATTCTAGAGA---------CAT.....................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................TAGCCATGTCCGTCTGTC--------------------CGG.........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AGATTCTAGAGA---------CAT.....................................................................	15	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCTG..................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................GAACTATAAAAGCTAGAAGGTT-GAGA.......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTCCG......................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................TACAGATTCTAGAGA---------CATAGA-C................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AGCCGAGTCGATCTAGCCATGTCCG......................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGAAGGTT-GAGATTCAGCATACAGA..........................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAG...............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TATAAAAGCTAGAAGGTT-GAGATT.....................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................AATAGCCGAGTCGATCTAGCCATGT.........................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................AAGGTT-GAGATTCAGCA................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCA............................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................TCTAGCCATGTCCGTCTGTC--------------------CGT.........................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CCGAGTCGATCTAGCCAT...........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTGT.................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................TAGAAGGTT-GAGATTCAG..................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................AAAGCTAGAAGGTT-GAGATTCAGC.................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................GATCTAGCCATGTCCGT.....................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................ATCTAGCCATGTCCGTCTGTC--------------------............................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TT-GAGATTCAGCATACAGATTCT......................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................AGCCGAGTCGATCTAGCCATGT.........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................GAGATTCAGCATACAGATTCTAGA...................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAGCCATGTCCGTCTGTC--------------------CGTAT.......................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................AGCCGAGTCGATCTAGCCATGTC........................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAGCCATGTC........................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................ATAGCCGAGTCGATCTAGCCATGTCCG......................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACTATAAAAGCTAGAAGGTT-...........................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................ACTATAAAAGCTAGAAG...............................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................AAGCTAGAAGGTT-GAGATT.....................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CATC....................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................ATAAAAGCTAGAAGGTT-GAGAT......................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................GGAACTATAAAAGCTAGAAGGTT-GAGATT.....................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CTAGCCATGTCCGTCTGTC--------------------CG..........................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCC.............................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATG..........................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAGCATACAGATTCTAGAGA---------CATAC...................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................CGATCTAGCCATGTCCGTCTGTC--------------------CGTA........................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................GATCTAGCCATGTCC.......................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................AAGCTAGAAGGTT-GAGA.......................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCTAGCCA............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCT...................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCTGT.................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................CGATCTAGCCATGTCCGTC....................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................CTTGATCAGGAACAG................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCATACAGATTCTAGAGA---------CATAGA-C................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AGTCGATCTAGCCATGTCCGTCTGTC--------------------............................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGATTCAGCATACAG...........................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................TCGATCTAGCCATGTCCGTCTGT.................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................TAGCCGAGTCGATCTAGCCAT...........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................GAGTCGATCTAGCCATGT.........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCATACAGATTCTAGAGA---------........................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................CCGAGTCGATCTAGCCATGT.........................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

------------------------------------------------------------------------------------------TATATATATTCTTGATCAGGATCAATAACCGAGTCCAACTGGCCATGTCAGTATGTCCGTCCGT----CT----GTCCGTATGAACGTT----GAGATCTCAGGAACTATAAAAACTATAAGGTT-GAGATTCAGCATACAGATTCTGGAGA---------CATAGA-C------------GTTTTTTGCC--ATGTTGTC--ACACCCACTCTAACGCCGA------CAAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................TCAGCATACAGATTCTGGAGA---------C.......................................................................	22	7	0.14	1	0	0	1	0
...........................................................................................ATATATATTCTTGATCAGGATCA.................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0
.....................................................................................................................................................................................................................TT-GAGATTCAGCATACAGATTCTGT....................................................................................	25	12	0.08	1	0	0	1	0
.....................................................................................................................................................................................................................TT-GAGATTCAGCATACAGATTCTGA....................................................................................	25	15	0.07	1	0	1	0	0
..........................................................................................TATATATATTCTTGATCAGGATCAATA..............................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
....................................................................................................................................................GTCCGT----CT----GTCCGTATGAAC...................................................................................................................................................	20	20	0.05	1	0	1	0	0

droYak3

CAA-----------------------------------------------------------------------AT--AATG--------TATATATATTCTCCATCAGGATCAATAGCCGAGTCGATCTGTCTATGCCCGTCTGTCCCTCCG------------GCCGTATGAGCGTC----GAGATTTCAGGAACTATTGAAGCTAGAAAGTT-GAGATTAAGCATGCAGACTCCAGAGT----------------CGCAG-C--GCAAGTTTGTTAACCCATGTTGCC--ACACCCACCCTAACTCCCA------CAAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................TGCCCGTCTGTCCCTCCG------------GCCGTATG......................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGAAGCTAGAAAGTT-GAGATTAAGC.................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................AATAGCCGAGTCGATCTGTCT.............................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................GAAGCTAGAAAGTT-GAGATTAAGC.................................................................................................	24	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TT-GAGATTAAGCATGCAGACTCCAGA...................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................CAATAGCCGAGTCGATCT.................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TAGAAAGTT-GAGATTAAGCATGCAGA..........................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

droEre2

ACACCA---------GTCGACGAGC---CCAGCCGGAGAATATTC--GCGTGAGCCCT-------A----CACCATATAAAG--------TATATATATTCTTGATCAGGAACAGTAGCCGAGTCGATCTGGCCATGACCGTCTGCC--------------------CGTATGAGCGCC----TCAATCTCAGGAACTGCAAAAGCTAGA--------GATTAAGCATGCAGCTTCCAGAGA---------CACAGA-CGCAG-C--GCAAGTTTGTTTCCAAATGTTGCC--ACGCCCACTCCAACGCCAA------CAAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................CCAGCCGGAGAATATTC--GCGTGAGCC...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................TCCAAATGTTGCC--ACGCCCACTCCAACGCC.............	30	6	0.83	5	0	0	0	0	0	0	5

-29.8	-29.7	-29.6	-29.5

dvi_11052

scaffold_12963:9084978-9085128 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AACCACAAGACGGCAAACGCCGAGCACACCCAGAACACACGATACTGCAGGTAGGCTATATATATTCTTGATCAGCATCAATAGCCAAGTCGATGTAGCCATGTCGTCTGTCTGTCCGTTCGTATGTATGAACGCAGGATCTCAGAACCTATAAGAGCTACAGACGGAAATTTTAGCTGTAGGTCCTCCTAGTGTCTGCGCAGATCGACTTTGTTTCCGATATTCGATAACTTACTCCGTTTCCAAGCAAT ***********************************************************.....((.....((.(((.(((((....(((.((((((.......((((...((((((((((....))))))...))))..))))..........))))))..)))........))))).))).))...))*********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060667 160_females_carcasses_total	SRR060689 160x9_testes_total	SRR060666 160_males_carcasses_total	M027 male body	SRR060683 160_testes_total	SRR060676 9xArg_ovaries_total	M047 female body	SRR060675 140x9_ovaries_total	SRR060679 140x9_testes_total	SRR060656 9x160_ovaries_total	GSM1528803 follicle cells	SRR060681 Argx9_testes_total	SRR060654 160x9_ovaries_total	SRR060660 Argentina_ovaries_total	SRR060673 9_ovaries_total
..........................................................................................................................................................................................TCCTAGTGTCTGCGCAGATCGACT.........................................	24	0	2	1.50	3	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0
....ACAAGACGGCAAACGCCGAGCA.................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAGACGGCAAACGCCGAGCAC................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CTCCTAGTGTCTGCGCAGATCGACT.........................................	25	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................ATATTCTTGATCAGCATCAATA........................................................................................................................................................................	22	0	20	0.30	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0
..................................ACTCACGATTCTGCAGGT.......................................................................................................................................................................................................	18	2	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GAAATTTTAGCTGTAGGTCCTCCTAG...........................................................	26	0	16	0.13	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCGCAGATCGACTTTGTTTC..................................	21	0	18	0.06	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................AGCCAGGTCAATGTAGCCATG....................................................................................................................................................	21	2	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................TTCTTGATCAGCATCACTAGCCAAG..................................................................................................................................................................	25	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................TTTTAGCTGTAGGTCCTCCTAGTG.........................................................	24	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TCTTGATCAGCATCAATAGCCAAGTCG...............................................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCGCAGATCGACTTTGTT....................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................CTGCGCAGATCGACATTGTTTCCGAT..............................	26	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................ATATATTCTTGATCAGCATCAATAGCC.....................................................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................CAGAACCTATAAGAGCTACAGA.......................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................TCCTAGTGTCTGCGCAGATC.............................................	20	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTCAGAACCTATAAGAGCTA...........................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................TTTTAGCTGTAGGTCCTCCTA............................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................TTCTTGATCAGCATCAATAGCCAAG..................................................................................................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................TCCTAGTGTCTGCGCAGATCGA...........................................	22	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTTAGCTGTAGGTCCTCCTAG...........................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................TCCTAGTGTCTGCGCAGAT..............................................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................TTCTTGATCAGCATCAATAGCCAAGTC................................................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................GATCAGCATCAATAGCCAAGTCGAT.............................................................................................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................AGGATCTCAGAACCTATAAGAG..............................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................GCGCTGATCGACTTTGTTTCCGA...............................	23	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................TATATTCTTGATCAGCATCAATAGCCA....................................................................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................AATTTTAGCTGTAGGTCCTCC..............................................................	21	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

TTGGTGTTCTGCCGTTTGCGGCTCGTGTGGGTCTTGTGTGCTATGACGTCCATCCGATATATATAAGAACTAGTCGTAGTTATCGGTTCAGCTACATCGGTACAGCAGACAGACAGGCAAGCATACATACTTGCGTCCTAGAGTCTTGGATATTCTCGATGTCTGCCTTTAAAATCGACATCCAGGAGGATCACAGACGCGTCTAGCTGAAACAAAGGCTATAAGCTATTGAATGAGGCAAAGGTTCGTTA *********************************************************.....((.....((.(((.(((((....(((.((((((.......((((...((((((((((....))))))...))))..))))..........))))))..)))........))))).))).))...))***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	SRR060658 140_ovaries_total	SRR060679 140x9_testes_total	SRR060677 Argx9_ovaries_total	SRR060673 9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	M047 female body	SRR060686 Argx9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	SRR060674 9x140_ovaries_total	SRR060675 140x9_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060678 9x140_testes_total	SRR060681 Argx9_testes_total	SRR060689 160x9_testes_total	SRR060676 9xArg_ovaries_total	SRR060670 9_testes_total	SRR060656 9x160_ovaries_total	SRR060685 9xArg_0-2h_embryos_total	SRR060655 9x160_testes_total	V116 male body	M027 male body	SRR060657 140_testes_total	SRR060659 Argentina_testes_total	SRR060661 160x9_0-2h_embryos_total	SRR060662 9x160_0-2h_embryos_total	SRR060667 160_females_carcasses_total	SRR060680 9xArg_testes_total	SRR1106730 embryo_16-30h	V047 embryo
............................................................................................................................................................................................................................ATAAGCTATTGAATGAGGCAAAGGT......	25	0	10	0.80	8	0	5	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AAGCTATTGAATGAGGCAAAGGTTCGT..	27	0	9	0.78	7	0	0	0	2	0	0	0	0	0	2	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
TTCGTGTTCTGCCGTATGC........................................................................................................................................................................................................................................	19	2	3	0.67	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CCAGGAGGATCACAGACGCGTCTAGCT...........................................	27	0	3	0.67	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TGGTCTTCTGCCGTATGCTGC.....................................................................................................................................................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TATAAGCTATTGAATGAGGCAAAGGT......	26	0	10	0.50	5	0	0	2	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTATTGAATGAGGCAAAGGTTCGT..	24	0	20	0.35	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATCCAGGAGGATCACAGACGCGTCT...............................................	25	0	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCGTGTTCTGCCGTATGC........................................................................................................................................................................................................................................	18	2	6	0.33	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTATTGAATGAGGCAAAGGTTCGTT.	25	0	20	0.25	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCGTTCTAGAGTCTTGGATATTC................................................................................................	23	1	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CAGACAGACAGGTAAGCATACATACTT.......................................................................................................................	27	1	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCTATTGAATGAGGCAAAGGTTCGT..	26	0	20	0.15	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................ACAGGAGGATCACAGACGCGTCTAGCT...........................................	27	1	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TAAGCTATTGAATGAGGCAAAGGTTCGT..	28	0	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AAGCTATTGAATGAGGCAAAGGTTCGTT.	28	0	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTATAAGCTATTGAATGAGGCAAAGGT......	27	0	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTTCTGCCGTATGCGGC.....................................................................................................................................................................................................................................	17	2	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TAAAATCGACATCCAGGAGGATCA..........................................................	24	0	20	0.10	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................AAGGCTATAAGCTATTGAATGAGGCAA..........	27	0	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCTATTGAATGAGGCAAAGGT......	22	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAATGAGGCAAAGGTTCGT..	19	0	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................TAAGCTATTGAATGAGGCAAAGGT......	24	0	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AAGCCATTGAATGAGGCAAAGGTTCGT..	27	1	20	0.10	2	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GACTTGGGTGCTAGGACGT..........................................................................................................................................................................................................	19	3	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AGAGTCTTGGATATTCTCGATGTCT.......................................................................................	25	0	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................GAGTCTTGGATATTCTCGATGTCT.......................................................................................	24	0	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CAAAGGCTATAAGCTATTGAATGAG..............	25	0	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGGCTATAAGCTATTGAATGA...............	21	0	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ACGCGTCTAGCTGAAACAAAG..................................	21	0	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGCGTCTAGCTGAAACAAAGGC................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGGATCACAGACGCGTCTAGC............................................	21	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CTGTTCTGCCGTATGC........................................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TAAAATCGACATCCAGGAGGATC...........................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................AGGATCACAGACGCGTCTAG.............................................	20	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CTGATATATATAAGAACTAGTCGTAGTT..........................................................................................................................................................................	28	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................GAGTCTTGGATATTCTCGATG..........................................................................................	21	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TATTGAATGAGGCAAAGGT......	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ACAGCGGTATAGCAGCCAG...........................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................ACTAGTCCTAGATATCGGTTCAGCTA.............................................................................................................................................................	26	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................TAGAGTCTTGGATATTCTCGA............................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................TGCGATGACGTCAATCCT...................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................AGGATCACAGACGCGTCTAACT...........................................	22	1	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ATGCTATTGCATGAGGCAAAGGTTCGT..	27	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TCGTAGTTATCGGTTCAGCT..............................................................................................................................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCTATTGAATGAGGCAAAGGTTCGT..	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTATTGAATGAGGCAAAGGTT.....	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................ATATATATAAGAACTAGTCGT..............................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAAGGCTATAAGCTATTGA...................	19	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTATTGAATGAGGCAAAGGTTCGTTA	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATGTTCTGCCGTATGC........................................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCTATTGAATGAGGCAAA.........	18	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................CAAGGCTATAAGCTATTGAA..................	20	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTATTGAATGAGGCAAAGGTTCG...	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ATGCTATTGAATGAGGCAAAGGTTCGT..	27	1	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAATGAGGCAAAGGTTCGTTA	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0