dvi_11041

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGATCGCGGACGCATGAATCAGAACGGCGTTGTCCAACCGCTGCTCACCGGTAGGTATTATATTCCAAAATCGGGGAAACTTATCTCTTAAAATGTACATGTATATCGAAAATGATCAAAAAATATCAAAAATGATCAACAACTGAGAGTTTAGATGTAATTTACACAAGTTCTTTTTAGACCCTGAACCCAATAGAGTACATAAAGTAATACGACCTCATAAATATATATAATATTCCGACCACATAAAG ************************************************....(((((.((((......((((((...((............((((....((((((..((((..(((......((((....)))).......)))..)))).))))))...))))............)).))))))....)))).)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V047 embryo	SRR060666 160_males_carcasses_total	SRR060667 160_females_carcasses_total	V053 head
....CGCGGACGCATGAATCAGAACG.................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0
........................................................................................................................................CAACAACTGAGAGTTTAGATGTAAT..........................................................................................	25	0	1	1.00	1	0	0	1	0
................................................................................................................................AAAATGATCGTCAACTGAGACTTT...................................................................................................	24	3	1	1.00	1	0	1	0	0
....................................ACCGCTGCTCACCGGTAGG....................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................TAATACTACCACATAAAGAT........................	20	3	10	0.10	1	1	0	0	0
...........................................................................................................................................................TGTAATGTACACAAGTACTTA...........................................................................	21	3	15	0.07	1	1	0	0	0
.............................................................ATTGGACAATCGGGGAAAC...........................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0

CCTAGCGCCTGCGTACTTAGTCTTGCCGCAACAGGTTGGCGACGAGTGGCCATCCATAATATAAGGTTTTAGCCCCTTTGAATAGAGAATTTTACATGTACATATAGCTTTTACTAGTTTTTTATAGTTTTTACTAGTTGTTGACTCTCAAATCTACATTAAATGTGTTCAAGAAAAATCTGGGACTTGGGTTATCTCATGTATTTCATTATGCTGGAGTATTTATATATATTATAAGGCTGGTGTATTTC ************************************************....(((((.((((......((((((...((............((((....((((((..((((..(((......((((....)))).......)))..)))).))))))...))))............)).))))))....)))).)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M027 male body	SRR060660 Argentina_ovaries_total	SRR060685 9xArg_0-2h_embryos_total	M028 head	M047 female body	SRR060682 9x140_0-2h_embryos_total	SRR060662 9x160_0-2h_embryos_total	SRR060667 160_females_carcasses_total	SRR060686 Argx9_0-2h_embryos_total	V047 embryo
.............TAGTTAGTCTTGCCGCAA............................................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TATATATTAATAGGCTGGTGTTTT..	24	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TATATATATTAATAGGCTGGTGTTTT..	26	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............TAGTTAGTCTTGCCGCAAA...........................................................................................................................................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0	0	0	0	0
.................................GCTTGGCGACTAGGGGCC........................................................................................................................................................................................................	18	3	20	0.25	5	0	0	0	0	5	0	0	0	0	0
..............AGTTAGTCTTGCCGCAAA...........................................................................................................................................................................................................................	18	2	6	0.17	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................TAAAGTCTTTACTAGTTG...............................................................................................................	18	2	18	0.11	2	0	0	0	0	0	2	0	0	0	0
...........TTTAGTTAGTCTTGCCGCAA............................................................................................................................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	0	1	0	0	0
...........TTTAGTTAGTCTTGCCGCA.............................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.................................GGTAGGCGGCGAGTGGCGA.......................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................TTATCCTGGGGTATTTAT.........................	18	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_12963:8986539-8986789 +	dvi_11041	GGATCGCGGACG---CATGAATCA---------------GAACG-------------------------GCGTTGTCCAACCGCT-GCTCACCGGTAGGTATTATATTCCAAAATC--GGGGAA---ACT---------TAT-------------------CT----------CT-TAA-AATGTACATGTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------CGAAAATGATCAAAAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAATGATCAACAACTGAGAG----------------------------------------------------------------TTTAGA-----------------------------------TGTAATTT-----ACA-----------------------------------------CAAG----TTCTTTTTAGACCCTG-AACCCAATA-----GAG--TACAT-----AAAGTAATACGACCTCAT---------AAATATATATAAT------------------ATTCCGACCACATAAAG-------
droMoj3	scaffold_6496:22636326-22636603 -		ACGTCTTAGCAGAGGCA------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTACATAGGCAAATCTTTG--CGC-------------------------------------------------------GTAC-------------------------------------------------------------------------AGAGACCTGGGTATTTAACATATGTCGGAAATGTAACAGCTCATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCCTGTAAAATATGTT-------------------------------TAGTGTA-------------------------------------------------AAGCTAACAAATTTTAAAGATTCTATTTATAGTTTTTAGCTTAATAA---------------TA-TTT---------A-----------------------------------------TTTA----TTATTTTTATACCCTG-AACCCATTGAAAAT-GGGAAATCA------GGGTATAATGGTTTTGT-G-------AAAAGTATGTAACAG---GCAGAAGGAATCATCGCAGACCCCATAAAG-------
droGri2	scaffold_14906:5233325-5233547 +		TTGT----G--------------CAAT---------------------------------------------------------CGACTCATTATTAATTATTCGATTTT----------------------------------------------------------------------------------------------------------------------------------------ATG------------------------AATTA------------------------------------CAGAATT--------------GGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------GTTACCACCTAAAT--------------------------------------------------------------------------------------------------------------------------------------G------C--------------TTATAAA------AT-TATTACTAATTATTACTTTT------------------------------------------A--------------------------------------------------------------CTAAAAATTCGAAAGTCAAA---GTAC----AACTTTTTATACCACAAAAACCAATAAAAAT-GG--GAAAA------GTCTATAATG---T-AAGC-------AGAAATATGTAACAG---CCAGAAAGAAGCATCTCCGACCCCATAAA--------
droWil2	scf2_1100000004902:10479631-10479940 -		GGAACATTGCAG---ACTGCAGAG---------------AATTCGCATTGTTAGCTCCCTGACCCCAGC----------------------------------------------------------TCT---------CGCTGCCTCGATGGACTCATTATCGTAATTATGGCAAA-TGGTTTAACA----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGTATTTCCCTCTCAATATTACAAAAAATACATTCAGAACT--TGACTAAATTTTAAATTGCTAGTACATAGCAAA-------------T-----------------------------------------------------------------------------------------------------------------------------CGGAAATTC-------------------------------------------------------------------------------------------------------------TGATT-----------------------------------TAGTATTTT----A--ACTAT------------------------------------GCCA----TTTTTTTTATACCATA-CACCCATA------GGG--TGAAA------TGGTATATTAAAGTCGCCA-------AAATGTATGTAACAG---GCAGAAGGAAGCATCTCCGACCCCACAAA--------
dp5	XL_group1a:444739-444915 +		TGTACAT------------------AT------------------------------------------ATAC-----------------------------------------------------------------------------------------------------------------AA---------------------------------------------AT-------------------------------AT------ACAG------------------------------------CTGA----------------------ATTTGAA--------------------------------AACGTTCGATTTAT----------GGAG---------------------GCTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-----ACAGAA--------------------------------------AAAA----TTGTTTTTATACCCGA-TACTCAAAA----AGAG--TATGT------GGGTATATAAGATTTGTGGTGAAAGTGGATGTATGTAACGT---CCAGAAGGAAGCGTTTCCGACCCCATAAAG-------
droPer2	scaffold_158:8555-8773 +		CACT----G--------------GCAAATA-----------------------------------------------------------------------T-------------------------------------------------------------------------------------------T------------------------------------------------------------------------ATCCCGAGCCAAACTTGGGGTTGGCTTAAAATAAAATTATTTATAAAGAAATCAAAAGTTAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGATATAGATGTCAAGTT-----------------------T---------------------------------------------ATGTTAATGCAT----CTATTTTTATACCCGA-TACTCAAAA----TGAG--TATTG------GGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGT---CCAGAAGGAATCGTTTCCGACCCTATAAAG-------
droAna3	scaffold_13339:3184988-3185156 +		AAAA----A--------------C-----A-----------------------------------------------------------------------------------------TTGAAAT---T---------TAA-------------------CC-----------GTGAA-ATCGTCTATTTATT---TG-GC--------------------------------------------------------------------------CG------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAAAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAGCTTAACAATGGGC----ATACA----------TTT-------------------------------------TTTTTATTTAATTATCAAGTT-----------------------T---------------------------------------------TAGGAATAGCACCCTGTTGTTTTAATACCAT--------------------------TGCA------ATAATA---------------------TATACAA-----------------------AAATATAATAAAG-------
droBip1	scf7180000396425:700312-700564 -		AAAC----A--------------AAAAACATTTAAAGAAAAATG----AGTAA---------------------------------------------------------------------------------ATAATAAAAGTGCGCGAAA----------------------------------------------------------------------------ATTGGTAGAAATG-------TTTGAGAAAATACTGCG----------------------------------------------------------------------------------AGAGACTTTGATTTTCAACTCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAAAAATACACAAAAAGAAATACCTAAAAGGAGAGCT-------------------------------------------------------------------------------------------------------------TTAGG-----------------------------------TAGAATTT-----ACAAAA--------------------------------------ACAT----TTATTTTTATACCCT--------------------------TGCAGAGGGTATTATAATTTTGTCC-------AAAAGTGTGCAACGC---AGTGAAGGAGACATCTCCGACCCTATAAAG-------
droKik1	scf7180000302242:15148-15387 +		ATTA----G--------------ATAA------------------------------------------GTGTTGCCCCACCCCT-AAAAGTATGCAAGCGTTA---------------------------------------------------------TTTTAAAAAGGACAAA-AGGACG----AATTTTAATTT-TTATTATTTTG--TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAA---TTAAAATACGAT-------ATGAACTCAAAAT------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAACAACAAA----------------------------------------------------------------------------------------------------TTTTATG-----TATATCA--ATA--------------------------------------AGAC----TCATATTTATACCCT--------------------------TGCA--GGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGC---AGTGAAGGAGACGTTTCCGACCCTATAAAG-------
droFic1	scf7180000453277:123296-123411 +		GGAC----A--------------CGAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAGTGATCAATTTAA----------CCAG---------------------GATCAGAGATGAAAAACAAAATCGGAATTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-------------------------------------------------TCGAAGTGAAAATCGAAATCGAAAATGG---AAACGGAAAATCGAAATCGA-----------------
droEle1	scf7180000488084:254-566 +		AGAACTCGAAG---GCG------AAATAAATATAAGAACATGTG----AGTAGGCTTTTTGTCCTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCACTAATGAAAATA------------------------TTTCAAAAATAAATTTCATTGACACTTAAAAAAGAATAAATTTTAAATTTTCCTATAATAAAATAAACCAATTATATTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGAATT-----------------------------TTTAGTAATAAAATT----------------------------------------------------------------------------------------------------TTTTATT-----T-----------ATATTATTTTTTATACCTAATTTCCGTCACAAAAAATACAAA----ACATTTTTATACCCT--------------------------TGCAGAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGC---AGTGAAGGAGACGTTTACGACCCTATAAAG-------
droRho1	scf7180000778917:9908-10167 +		TGTT----A--------------GAAC----------------------------------------------------------------------------------------ATCCTAAAAACCTTT---------GGTAACCTAATAAGAATTACTATCGA-------------------TAC--ATTTTATAAAG-----TTTTCT--C-----------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAAATGTAATA-----------------------------------------------------------------------------------------------------ACTAA-------------------------------------------------------------------------------------------------------------------------------------------------AAAAACTTTATACATCTAATAA--------------TTTTTTTAAATTTTATTCCTTCTAAGACCATA-----------------------------------AGAA-----------------------C---------------------------------------------AAGTAAAAGAAA----TCGTTATTATACCCGT-TACTCGTA------GAG--TAAAA------GGGTATATTGTATTCGTGC-------AAAAGTATGTAACAG---GTAGAAGGAAGCGTTTCCGACCCTATAAAG-------
droBia1	scf7180000302481:14534-14725 -		TATATTA------------------CAACA-----------------------------------------------------------------------------------------TTGAAATAAGT---------GGT---------------------------------------------------------------------------------------ATCAGTAAGAATG-------TTT----------------------------------------------------------------------------------------------------------------AAGATATATCGGATTAATAATCTCTCCTA----------CCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC--------------------------------------------------------AGACGAACAAAATAAAGACAGTTCAGA-----------------------------------TATCATTTT----A--ACA--------------------------------------AAAC----CCTTTTGTATACCCT--------------------------TGCAGAGGGTATAATGATTTAAT-----------------------G---AATGAAGGAGTCGTTTCCGACCCCATAAAG-------
droTak1	scf7180000415991:380260-380529 +		GGATTGA------------------GAACA-----------------------------------------------------------------------------------------AAGAACTATGTGAGATCGTTGTTATTTCAGTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------TCTACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAGTCAAAATTCAATTGTTGCAATTTTTGTAATATACAATTTCTTATTATTTTTCGTCTTATCTTTACTTATTTTCGTTCATCAATGAAA-----------------------------------------------------------------------------A--------------TTTTCTCATTCTTTACTCTC------------------------------------------T----------------------------------------------------------------------CT-------------TAAG----ATGTTTTTATACCCGT-TACTCGTA------GAG--TAACA------GGGTATATTGTATTCGTGC-------AAAAGTATGTAACAG---CTAGAAGGAAGCGTTTCCGACCCCATAAAG-------
droEug1	scf7180000409886:263191-263397 -		TTTC----G--------------GGAT----------------------------------------------------------------------------------------G--AG------------------------------------------------------------GGCA----TATTATATTTA-GCAATTGTTTA--TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAAA-------------TGTGAAAAGTGAGATTAAAAA--------------------------------------------------------------------------------------------------------------------------------------A------C--------------AATAGACAAAAATAGA--------------------------------------------------------------TTTG-------GGA---------------TA-TATTTT----A--ATTA--------------------------------------TGT----TTGTTTTTATACCCGT-TACTCGTA------GAG--TAAAA------GGGTATACTAGATTCGTTG-------AAAAGTATGTAACAG---ATAGAAGGAAGCGTTTGCGACCCTATAAAG-------
dm3	chr3RHet:1820639-1820835 -		TTCG----G--------------ATAT----------------------------------------------------------------------------------------G--GAAAGA---AAT---------TAA-------------------CG----------CATG-TAATTTATAA----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG------------------------------------------------------------------------CTTAAATCATTATTCATTAT---------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAATATTCGGTGCCTAAAAA----------------------------------------------------------------------------------------------------TTTAATT-----T-----------GT---------------------CT-------------TGCA----CCACTTTTATACCCGT-TACTCGTA------GAG--TAAAT------AGGCAGACT-GCTTCGTTG-------AAAAGTGTGTAACAG---GCAGAAGGAAAATTTTCCGACTTCATAAAG-------
droSim2	4:761513-761711 -		AAATCGG------------------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATC---------------------------------------------------------------------AT------ACAG------------------------------------CTGCCAA--------------A------------------------------------------------------------------------------------------------------------------------------AAAAC-------------AGAGGATAATTCAATTAA-AC--------------------------------------------------------------------------------------------------------------------------------------A------T--------------AATAGATAATCATATA--------------------------------------------------------------ATAA-------TCA---------------TA-TGTTCT----T--ACTAG-----------------G---T--------------TTAC----TCTATTTTGTACCCGT-TGCTCGTA------GAG--TAAAA---GGAGGGTAT-----ATTCGTTG-------AAACGTATGTAATG-------GCAGGAAGCGTTTCCGACCATATATTGATCAATA
droSec2	scaffold_71:61660-61833 -		TATTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-TCCGTGCATTTATGTCCCA-AAAACTGACTTCACGCATGAAAAATAAATATAAATAAACATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------CT-------------GAGG----GTGTAATTACACCCGT-CTCTCCTA------GAA--TAAAT------GGGTATAATAGATTCTATG-------AAAAGTATGTAACAG---ACAGAAGGAAGCGTTTCCGACTATATAAAG-------
droYak3	3R:1268829-1269080 +		TTCA----A--------------CCT---------------------------------------------------------CC-G-TCACCGGAAATTCTCAGATTTC------------------------------AA-------------------TT-----------ATG-AAATTTACAG----------------------------------------------------------------------------------------------------------------------------------------TTAAA----CTGCTTTTATTGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGGGCTTTAATAGTCTGAATTAAAATCAACAATGCG----------------AGATAACTAGA--------------------------------------------------------------AGTG-------TCACTCGAATGACCTATATC-----TA----A--ATCGT------------------------------------GCAC----CTCTTTTTATACCCGT-TACTCGTA------GAG--TAAAA------GGGTATACTAGATTCGTTG-------AAAAGTATGTAACAG---GCAGAAGGAAGGGTTTCCGACCATATAAAG-------
droEre2	scaffold_4770:332214-332388 -		TTTT----G--------------AGAG----------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------TGTTTGTAAATAGAGATGTTTTGTA------------------------AATAG------------------------------------CTGTAAA--------------GAGATA--------------------------------------------------------------------------------------------------------------------------------------------------ATTAAGCTTTATAT--------------------------------------------------------------------------------------------------------------------------------------A------C--------------TTTAGAC-------------------------------------------------------------------------------------------------------------------A-----------------------------------------CAAA----ATATTTTTATACCCCT-TACTCGCA------GAG--TCAAT------GGTTATACTAGATTCGTTG-------AATTCATTGAAATCATAACCATATGAA-----ATCCGACCATATGAAG-------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GGATCGCGGACG---CATGAATCA---------------GAACG-------------------------GCGTTGTCCAACCGCT-GCTCACCGGTAGGTATTATATTCCAAAATC--GGGGAA---ACT---------TAT-------------------CT----------CT-TAA-AATGTACATGTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------CGAAAATGATCAAAAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAATGATCAACAACTGAGAG----------------------------------------------------------------TTTAGA-----------------------------------TGTAATTT-----ACA-----------------------------------------CAAG----TTCTTTTTAGACCCTG-AACCCAATA-----GAG--TACAT-----AAAGTAATACGACCTCAT---------AAATATATATAAT------------------ATTCCGACCACATAAAG-------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....CGCGGACG---CATGAATCA---------------GAACG-------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTGAGAG----------------------------------------------------------------TTTAGA-----------------------------------TGTAAT...........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ACCGCT-GCTCACCGGTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

ACGTCTTAGCAGAGGCA------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTACATAGGCAAATCTTTG--CGC-------------------------------------------------------GTAC-------------------------------------------------------------------------AGAGACCTGGGTATTTAACATATGTCGGAAATGTAACAGCTCATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCCTGTAAAATATGTT-------------------------------TAGTGTA-------------------------------------------------AAGCTAACAAATTTTAAAGATTCTATTTATAGTTTTTAGCTTAATAA---------------TA-TTT---------A-----------------------------------------TTTA----TTATTTTTATACCCTG-AACCCATTGAAAAT-GGGAAATCA------GGGTATAATGGTTTTGT-G-------AAAAGTATGTAACAG---GCAGAAGGAATCATCGCAGACCCCATAAAG-------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTATACCCTG-AACCC..........................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTTTGT-G-------AAAAGTATGT.............................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

TTGT----G--------------CAAT---------------------------------------------------------CGACTCATTATTAATTATTCGATTTT----------------------------------------------------------------------------------------------------------------------------------------ATG------------------------AATTA------------------------------------CAGAATT--------------GGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------GTTACCACCTAAAT--------------------------------------------------------------------------------------------------------------------------------------G------C--------------TTATAAA------AT-TATTACTAATTATTACTTTT------------------------------------------A--------------------------------------------------------------CTAAAAATTCGAAAGTCAAA---GTAC----AACTTTTTATACCACAAAAACCAATAAAAAT-GG--GAAAA------GTCTATAATG---T-AAGC-------AGAAATATGTAACAG---CCAGAAAGAAGCATCTCCGACCCCATAAA--------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GGAACATTGCAG---ACTGCAGAG---------------AATTCGCATTGTTAGCTCCCTGACCCCAGC----------------------------------------------------------TCT---------CGCTGCCTCGATGGACTCATTATCGTAATTATGGCAAA-TGGTTTAACA----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGTATTTCCCTCTCAATATTACAAAAAATACATTCAGAACT--TGACTAAATTTTAAATTGCTAGTACATAGCAAA-------------T-----------------------------------------------------------------------------------------------------------------------------CGGAAATTC-------------------------------------------------------------------------------------------------------------TGATT-----------------------------------TAGTATTTT----A--ACTAT------------------------------------GCCA----TTTTTTTTATACCATA-CACCCATA------GGG--TGAAA------TGGTATATTAAAGTCGCCA-------AAATGTATGTAACAG---GCAGAAGGAAGCATCTCCGACCCCACAAA--------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG---GCAGAAGGAAGCATCTCCGA.................	26	20	0.65	13	0	13	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG---GCAGAAGGAAGCATC......................	21	20	0.25	5	0	0	0	5	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCA-------AAATGTATGTAACAG---GC...................................	22	20	0.05	1	0	1	0	0	0

dp5

TGTACAT------------------AT------------------------------------------ATAC-----------------------------------------------------------------------------------------------------------------AA---------------------------------------------AT-------------------------------AT------ACAG------------------------------------CTGA----------------------ATTTGAA--------------------------------AACGTTCGATTTAT----------GGAG---------------------GCTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-----ACAGAA--------------------------------------AAAA----TTGTTTTTATACCCGA-TACTCAAAA----AGAG--TATGT------GGGTATATAAGATTTGTGGTGAAAGTGGATGTATGTAACGT---CCAGAAGGAAGCGTTTCCGACCCCATAAAG-------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................TAT----------GGAG---------------------GCTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-----ACAGAA--------------------------------------AAAA----T...............................................................................................................................	28	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT------GGGTATATAAGATTTGTGG..............................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTTATACCCGA-TACTCAAAA----A.................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTATG..............................................	23	5	1.60	8	0	2	0	0	0	0	1	0	5	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTA................................................	21	6	1.17	7	0	4	0	0	1	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTATGT.............................................	24	5	1.00	5	0	2	0	0	0	0	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................................................................TAT----------GGAG---------------------GCTTCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-----ACAGAA--------------------------------------AA......................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................TTGAA--------------------------------AACGTTCGATTTAT----------GGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................TTGAA--------------------------------AACGTTCGATTTAT----------GGAG---------------------GCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................T-------------------------------AT------ACAG------------------------------------CTGA----------------------ATTTGAA--------------------------------AACGTTCGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTTGAA--------------------------------AACGTTCGATTTAT----------GGAG---------------------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GGGTATATAAGATTTGTGGT.............................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATG..................................................	19	20	0.50	10	0	0	0	0	0	0	10	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAGTGGATG..................................................	21	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAGTGG.....................................................	19	20	0.35	7	0	5	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TTGTTTTTATACCCGA-TACTCAAA.......................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGT.................................................	20	20	0.30	6	0	0	0	0	0	0	0	0	6	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTATGTAACG.........................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTATGTA............................................	25	5	0.20	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTAT...............................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTATGTAACGT---CCAGAA...............................	20	11	0.18	2	0	0	0	0	0	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---CCAGAAGGAAGCGTTTCCG..................	21	20	0.10	2	0	0	0	0	0	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCGTTTCCGACC...............	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGA....................................................	17	20	0.05	1	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGT---CCAGAAGGAAGCGTTTCCG..................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAAGCGTTTCCGACC...............	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CCAGAAGGAAGCGTTTCCGA.................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAAGCGTTTCCGACCC..............	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---CCAGAAGGAAGCGTTTCC...................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTATACCCGA-TACTCAAAA----..................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTGG.....................................................	17	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGACCCCA............	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGAT...................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CACT----G--------------GCAAATA-----------------------------------------------------------------------T-------------------------------------------------------------------------------------------T------------------------------------------------------------------------ATCCCGAGCCAAACTTGGGGTTGGCTTAAAATAAAATTATTTATAAAGAAATCAAAAGTTAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGATATAGATGTCAAGTT-----------------------T---------------------------------------------ATGTTAATGCAT----CTATTTTTATACCCGA-TACTCAAAA----TGAG--TATTG------GGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGT---CCAGAAGGAATCGTTTCCGACCCTATAAAG-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAACGT---CCAGAAGGAAT..........................	20	20	0.45	9	0	0	0	0	0	9
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAA----TGAG--TATTG------GGGTA............................................................................	20	20	0.20	4	0	0	0	0	0	4
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGT.......................................................	21	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTATACCCGA-TACTCA.........................................................................................................	21	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTT-----------------------T---------------------------------------------ATGTTAATG.......................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0

droAna3

AAAA----A--------------C-----A-----------------------------------------------------------------------------------------TTGAAAT---T---------TAA-------------------CC-----------GTGAA-ATCGTCTATTTATT---TG-GC--------------------------------------------------------------------------CG------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAAAAATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAGCTTAACAATGGGC----ATACA----------TTT-------------------------------------TTTTTATTTAATTATCAAGTT-----------------------T---------------------------------------------TAGGAATAGCACCCTGTTGTTTTAATACCAT--------------------------TGCA------ATAATA---------------------TATACAA-----------------------AAATATAATAAAG-------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AAAC----A--------------AAAAACATTTAAAGAAAAATG----AGTAA---------------------------------------------------------------------------------ATAATAAAAGTGCGCGAAA----------------------------------------------------------------------------ATTGGTAGAAATG-------TTTGAGAAAATACTGCG----------------------------------------------------------------------------------AGAGACTTTGATTTTCAACTCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAAAAATACACAAAAAGAAATACCTAAAAGGAGAGCT-------------------------------------------------------------------------------------------------------------TTAGG-----------------------------------TAGAATTT-----ACAAAA--------------------------------------ACAT----TTATTTTTATACCCT--------------------------TGCAGAGGGTATTATAATTTTGTCC-------AAAAGTGTGCAACGC---AGTGAAGGAGACATCTCCGACCCTATAAAG-------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTA----G--------------ATAA------------------------------------------GTGTTGCCCCACCCCT-AAAAGTATGCAAGCGTTA---------------------------------------------------------TTTTAAAAAGGACAAA-AGGACG----AATTTTAATTT-TTATTATTTTG--TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAA---TTAAAATACGAT-------ATGAACTCAAAAT------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAACAACAAA----------------------------------------------------------------------------------------------------TTTTATG-----TATATCA--ATA--------------------------------------AGAC----TCATATTTATACCCT--------------------------TGCA--GGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGC---AGTGAAGGAGACGTTTCCGACCCTATAAAG-------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGAC----A--------------CGAAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAGTGATCAATTTAA----------CCAG---------------------GATCAGAGATGAAAAACAAAATCGGAATTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-------------------------------------------------TCGAAGTGAAAATCGAAATCGAAAATGG---AAACGGAAAATCGAAATCGA-----------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGAACTCGAAG---GCG------AAATAAATATAAGAACATGTG----AGTAGGCTTTTTGTCCTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCACTAATGAAAATA------------------------TTTCAAAAATAAATTTCATTGACACTTAAAAAAGAATAAATTTTAAATTTTCCTATAATAAAATAAACCAATTATATTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGAATT-----------------------------TTTAGTAATAAAATT----------------------------------------------------------------------------------------------------TTTTATT-----T-----------ATATTATTTTTTATACCTAATTTCCGTCACAAAAAATACAAA----ACATTTTTATACCCT--------------------------TGCAGAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGC---AGTGAAGGAGACGTTTACGACCCTATAAAG-------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTT----A--------------GAAC----------------------------------------------------------------------------------------ATCCTAAAAACCTTT---------GGTAACCTAATAAGAATTACTATCGA-------------------TAC--ATTTTATAAAG-----TTTTCT--C-----------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTAAAATGTAATA-----------------------------------------------------------------------------------------------------ACTAA-------------------------------------------------------------------------------------------------------------------------------------------------AAAAACTTTATACATCTAATAA--------------TTTTTTTAAATTTTATTCCTTCTAAGACCATA-----------------------------------AGAA-----------------------C---------------------------------------------AAGTAAAAGAAA----TCGTTATTATACCCGT-TACTCGTA------GAG--TAAAA------GGGTATATTGTATTCGTGC-------AAAAGTATGTAACAG---GTAGAAGGAAGCGTTTCCGACCCTATAAAG-------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATATTA------------------CAACA-----------------------------------------------------------------------------------------TTGAAATAAGT---------GGT---------------------------------------------------------------------------------------ATCAGTAAGAATG-------TTT----------------------------------------------------------------------------------------------------------------AAGATATATCGGATTAATAATCTCTCCTA----------CCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC--------------------------------------------------------AGACGAACAAAATAAAGACAGTTCAGA-----------------------------------TATCATTTT----A--ACA--------------------------------------AAAC----CCTTTTGTATACCCT--------------------------TGCAGAGGGTATAATGATTTAAT-----------------------G---AATGAAGGAGTCGTTTCCGACCCCATAAAG-------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGATTGA------------------GAACA-----------------------------------------------------------------------------------------AAGAACTATGTGAGATCGTTGTTATTTCAGTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------TCTACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAGTCAAAATTCAATTGTTGCAATTTTTGTAATATACAATTTCTTATTATTTTTCGTCTTATCTTTACTTATTTTCGTTCATCAATGAAA-----------------------------------------------------------------------------A--------------TTTTCTCATTCTTTACTCTC------------------------------------------T----------------------------------------------------------------------CT-------------TAAG----ATGTTTTTATACCCGT-TACTCGTA------GAG--TAACA------GGGTATATTGTATTCGTGC-------AAAAGTATGTAACAG---CTAGAAGGAAGCGTTTCCGACCCCATAAAG-------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTTC----G--------------GGAT----------------------------------------------------------------------------------------G--AG------------------------------------------------------------GGCA----TATTATATTTA-GCAATTGTTTA--TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAAAAA-------------TGTGAAAAGTGAGATTAAAAA--------------------------------------------------------------------------------------------------------------------------------------A------C--------------AATAGACAAAAATAGA--------------------------------------------------------------TTTG-------GGA---------------TA-TATTTT----A--ATTA--------------------------------------TGT----TTGTTTTTATACCCGT-TACTCGTA------GAG--TAAAA------GGGTATACTAGATTCGTTG-------AAAAGTATGTAACAG---ATAGAAGGAAGCGTTTGCGACCCTATAAAG-------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCG----G--------------ATAT----------------------------------------------------------------------------------------G--GAAAGA---AAT---------TAA-------------------CG----------CATG-TAATTTATAA----TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG------------------------------------------------------------------------CTTAAATCATTATTCATTAT---------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAATATTCGGTGCCTAAAAA----------------------------------------------------------------------------------------------------TTTAATT-----T-----------GT---------------------CT-------------TGCA----CCACTTTTATACCCGT-TACTCGTA------GAG--TAAAT------AGGCAGACT-GCTTCGTTG-------AAAAGTGTGTAACAG---GCAGAAGGAAAATTTTCCGACTTCATAAAG-------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTGTGTAACAG---GCAGA................................	26	4	8.50	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTGTGTAACAG---GCAGAA...............................	27	4	6.50	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	2	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
........................TAT----------------------------------------------------------------------------------------G--GAAAGA---AAT---------TAA-------------------CG----------CATG-TAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTGTGTAACAG---GCAA.................................	25	16	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTGTGTAACAG---G....................................	22	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTGTGTAA...........................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAATCGG------------------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATATC---------------------------------------------------------------------AT------ACAG------------------------------------CTGCCAA--------------A------------------------------------------------------------------------------------------------------------------------------AAAAC-------------AGAGGATAATTCAATTAA-AC--------------------------------------------------------------------------------------------------------------------------------------A------T--------------AATAGATAATCATATA--------------------------------------------------------------ATAA-------TCA---------------TA-TGTTCT----T--ACTAG-----------------G---T--------------TTAC----TCTATTTTGTACCCGT-TGCTCGTA------GAG--TAAAA---GGAGGGTAT-----ATTCGTTG-------AAACGTATGTAATG-------GCAGGAAGCGTTTCCGACCATATATTGATCAATA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TATTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-TCCGTGCATTTATGTCCCA-AAAACTGACTTCACGCATGAAAAATAAATATAAATAAACATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------CT-------------GAGG----GTGTAATTACACCCGT-CTCTCCTA------GAA--TAAAT------GGGTATAATAGATTCTATG-------AAAAGTATGTAACAG---ACAGAAGGAAGCGTTTCCGACTATATAAAG-------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---ACAGAAGGAAGCGTTTCCG..................	21	6	0.17	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCGTTTCCGACT...............	20	20	0.05	1	0	1	0	0

droYak3

TTCA----A--------------CCT---------------------------------------------------------CC-G-TCACCGGAAATTCTCAGATTTC------------------------------AA-------------------TT-----------ATG-AAATTTACAG----------------------------------------------------------------------------------------------------------------------------------------TTAAA----CTGCTTTTATTGTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGGGCTTTAATAGTCTGAATTAAAATCAACAATGCG----------------AGATAACTAGA--------------------------------------------------------------AGTG-------TCACTCGAATGACCTATATC-----TA----A--ATCGT------------------------------------GCAC----CTCTTTTTATACCCGT-TACTCGTA------GAG--TAAAA------GGGTATACTAGATTCGTTG-------AAAAGTATGTAACAG---GCAGAAGGAAGGGTTTCCGACCATATAAAG-------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAG---GCAGAAGGAAGGGTTTCC...................	26	20	8.45	169	0	0	169	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG---GCAGAAGGAAGGGTTTCCGAC................	27	20	1.00	20	0	0	20	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAG---GCAGAAGGAAGGGTT......................	28	20	0.55	11	0	0	0	0	0	0	0	0	0	0	11
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCGT-TACTCGTA------GAG--............................................................................................	26	20	0.45	9	0	3	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAG---GCAGAAGGAAGGGTTT.....................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---GCAGAAGGAAGGGTTTCCGACC...............	27	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA------GGGTATACTAGATTCGTTG-------AAAA...................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTA------GAG--TAAAA------GGGTATACTAGA.....................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---GCAGAAGGAAGGGTTTCCGACCA..............	26	20	0.15	3	0	0	0	2	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAG---GCAGAAGGAAGGGT.......................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGGGTTTCCGACCA..............	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAG---GCAGAAGGAAGGGTT......................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GCAGAAGGAAGGGTTTCCGACC...............	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGT-TACTCGTA------GAG--TAAAA------GG...............................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCGT-TACTCGTA------GA...............................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCGT-TACT...........................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCGT-TACTCGTA------GAG--TA..........................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG---GCAGAAGGAAGGGTTTC....................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCGT-TACTCGTA------GAG--TAA.........................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAG---GCAGAAGGAAGGG........................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTTT----G--------------AGAG----------------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------TGTTTGTAAATAGAGATGTTTTGTA------------------------AATAG------------------------------------CTGTAAA--------------GAGATA--------------------------------------------------------------------------------------------------------------------------------------------------ATTAAGCTTTATAT--------------------------------------------------------------------------------------------------------------------------------------A------C--------------TTTAGAC-------------------------------------------------------------------------------------------------------------------A-----------------------------------------CAAA----ATATTTTTATACCCCT-TACTCGCA------GAG--TCAAT------GGTTATACTAGATTCGTTG-------AATTCATTGAAATCATAACCATATGAA-----ATCCGACCATATGAAG-------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_11041

scaffold_12963:8986589-8986739 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.4	-20.2	-20.2