ID:

dvi_11025

 Coordinate:

scaffold_12963:8875327-8875413 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.4 -6.0

Flybase annnotation

exon [dvir_GLEANR_1853:11]; CDS [Dvir\GJ17250-cds]; CDS [Dvir\GJ17250-cds]; exon [dvir_GLEANR_1853:12]; intron [Dvir\GJ17250-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey+
mature
  1. scaffold_12875:671557-671583 -
  2. scaffold_12928:57590-57616 -
  3. scaffold_12928:6610253-6610279 +
  4. dvi_11025  scaffold_12963:8875370-8875396 +
  5. scaffold_12963:19161670-19161696 -
  6. scaffold_13042:1266129-1266155 +
  7. scaffold_13047:4119516-4119542 -
  8. scaffold_13047:14471088-14471114 -
  9. scaffold_13049:22747960-22747986 +
star
  1. scaffold_4048:629-649 +
  2. scaffold_4049:302-322 -
  3. scaffold_9467:4771-4791 +
  4. scaffold_9769:2490-2510 +
  5. scaffold_9769:4644-4664 +
  6. scaffold_10291:242-262 -
  7. scaffold_10358:4211-4231 -
  8. scaffold_12318:66-86 +
  9. scaffold_12823:8705-8725 +
  10. scaffold_12855:894899-894919 -
  11. scaffold_12856:3653-3673 -
  12. scaffold_12856:7844-7864 -
  13. scaffold_12875:5444050-5444070 +
  14. dvi_11025  scaffold_12963:8875332-8875352 +
  15. scaffold_12963:17509123-17509143 +
  16. dvi_14401  scaffold_13042:2311278-2311298 -
  17. scaffold_13047:13397074-13397094 -
  18. scaffold_13049:9409253-9409273 -
  19. scaffold_13049:16409305-16409325 +
  20. scaffold_13052:1856128-1856148 -
  21. scaffold_13052:1849932-1849952 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------##################################################
CCGCCGCTGCCGCCGCCTCGGGCAGCGGTTCGACACTACAGCACGGATTGGTGGGGCAGCATCAGCAACAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAACAACAGCAACAGCAACAACAACAACAACAGCAGCAGGTCGGCGGAACTCAGGTGCCAGCCATGCCCACAGCCGCCGATATCAG
*******************************************************((.............((.......((.((.............)).)).......))....))...******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060667
160_females_carcasses_total
 V116
male body		 GSM1528803
follicle cells		 V047
embryo
 M028
head
 SRR060663
160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR1106726
embryo_14-16h
 SRR1106728
larvae
 SRR060664
9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060665
9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
........................................GCACGGATTGGTGGGGCAGCATC............................................................................................................................ 23 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGACACTACAGCACGGATT.......................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTCGGCGGAACTCAGGTGCCAGCCATGC................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAACAACAGCAGCAGCAGGTCGGC......................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GCAGCAGGTCGGCGGAACTCAGG............................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AGCACGGATTGGTGGGGCAGCAT............................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AGCAGCAGGTCGGCGGAACTC.................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACTGCAGCAGGTCGGCGGAACTCA................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CGGATTGGTGGGGCAGCATCAGC......................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CAGCAACAACAGCAACAACAACAACAGCAGCAGCAGGTCGG.......................................... 41 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AGCACGGATTGGTGGGGCAGCATCA........................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GACACTACAGCACGGATTGGT....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCGGGCAGCGGTTCGACACTACAGCACGG............................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTAACTCAGGTGCCAGCCATGCC.................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CAGCCATGCCCACAGCCGCC........ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCAGCGGTTCGACACTACAG.................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CAGCCATGCCCACAGCCGCCGATAT... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAACAACAACAGCAGCAGGTCG........................................... 22 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGCATGGATTGGTGGGGCCG................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACAGCAGCAACAACAGCAACAGCAAC................................................................... 27 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CAACAACAACAACAGCAGC................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GCAGCATCAGCAACAGCAACA............................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0
...............................................................................GCAGCAGCAACAACAACAGCAGCA.................................................................................... 24 0 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGCAACAACAACAGCAGCA.................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AGCAGCAGCAGCAACAACA............................................................................................. 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CAACAGCAACAGCAGCAGCAGCAA.................................................................................................. 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
............................................................ATCATCAACAGCAACAGCAGCA......................................................................................................... 22 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
................................................................GCAACAGCAACAGCAGCAGCA...................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGCAACAACAACAACAACAG..................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AACAACAGCAACAGCAACA.................................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTACGCGAAACTCAGGTGC............................ 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................ATCAGCAACAGCAACAGCAGC.......................................................................................................... 21 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGCATCAGCAACAGCAACAGCA............................................................................................................ 22 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CAGCATCAGCAACAGCAACAG.............................................................................................................. 21 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................AACAACAACAGCAGCAACAACAGCAACA........................................................................ 28 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACAACAACAACAACAGCAGCA................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AGCAACAGCAACAGCAGCAGCAGCA................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ACAGCAGCAACAACAGCAACAGCA..................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................ACAGCAACAACAACAACAAC....................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................ACAGCAACAGCAGCAGCAGCA................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ACAGCAGCAACAACAGCAACA........................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATAGGCGAAACTCAGGTGC............................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACAACAACAACAACAGCAGCAG............................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAGCAACAACAACAGCAGCAACAACAGC............................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GCAACAGCAACAGCAGCAG........................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACAGCAACAACAACAACAACAGCA................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GCAACAGCAGCAGCAGCAAC................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ACAGCAGCAGCAGCAACAACA............................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................AGCAACAGCAACAGCAGCAGCA...................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CAGCATCAGCAACAGCAACA............................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................GTACGCGAAACTCAGGTG............................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GCAGCAGCAGCAACAACAACAGCAGCA.................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AACAACAGCAACAGCAACAA................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GCAACAGCAGCAGCAGCAA.................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................AGCAGCAACAACAGCAACA........................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAGCAGCAACAACAACAGCAGCA.................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................ACAGCAACAGCAGCAGCAGCAACA................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CAACAGCAGCAGCAGCAACAACAACAGC........................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GCAACAACAGCAACAGCAACAACA............................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AGCAGCAGCAACAACAACAGCA....................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................CAGCAACAACAGCAACAGCAAC................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................ACAGCAGCAGCAGCAACAACAACAGC........................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GCAGCAGCAACAACAACAGCAGCAAC.................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AGCAGCAGCAACAACAACAGCAGCA.................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................CAGCAACAGCAACAGCAGCAGC....................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AACAACAGCAGCAACAACAGCA........................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AACAACAACAGCAGCAACAACAGC............................................................................ 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CAACAGCAGCAACAACAGCAA.......................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGCAACAACAACAGCAGCAACAACAGC............................................................................ 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CAGCAACAGCAACAGCAGC.......................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................GCAGCAACAACAGCAACAGCA..................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................AGCAACAACAGCAACAGCAACAA................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CAACAACAGCAACAGCAACAACAAC............................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................GGACTGCTTGGTGGGGCAG................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAGCAACAGCAGCAGCAGCAA.................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CAGCAACAACAACAACAACAGC.................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAGCAGCAACAACAGCAACAGCA..................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CCGCGAAACTCAGGTGCT........................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGCGGCGACGGCGGCGGAGCCCGTCGCCAAGCTGTGATGTCGTGCCTAACCACCCCGTCGTAGTCGTTGTCGTTGTCGTCGTCGTCGTTGTTGTTGTCGTCGTTGTTGTCGTTGTCGTTGTTGTTGTTGTTGTCGTCGTCCAGCCGCCTTGAGTCCACGGTCGGTACGGGTGTCGGCGGCTATAGTC
*******************************************************************((.............((.......((.((.............)).)).......))....))...******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060657
140_testes_total
 V053
head
 SRR060681
Argx9_testes_total
............................AAGCTGTGATGTCGTGCCTAA.......................................................................................................................................... 21 0 1 1.00 1 1 0 0
..............................................................................................................................................................GGGCGGTACGGGTGGCGGC.......... 19 2 7 0.14 1 0 1 0
.................TGCCCGGCGCCAATCTGT........................................................................................................................................................ 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:8875277-8875463 + dvi_11025 CCGCCGC------------TGCCG---CCGCC-----------TCGG--GCAGC---GGTTCGACA------------CT--ACA---GCAC-GGAT-----TGGTGGGG-------------C---AG------------------CATCAGCAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAACAACAACAGCAGCAACAA-------------------------------------------------------CAGCAACAGCAACAACAACAACAACA-GCAGCAGGTCGGCGGAACTCA------------------------------------GG----------------------------TGCCAGCCATGCCCAC----------------------------AGCCG------------------------------------------CC-GAT-AT-----CAG
droMoj3 scaffold_6473:14905254-14905432 + CGGCTC----A---------GTGC---CGCC-CGCTGCG--CTG--CCGCCAC--------CGTCG------------C---TC---------------------------------AGCTCTCAGCAG---------CAA------CAGCAGCAGCAGC------------------------------------------------------------------AACAGCAGCAGCAGCAACAACAACAGCA---GCAACAGCAGC----------------ACCAGCAACAGCAGCAACAAC------AGC---A---GCAGCAGCAACTGC---------AACAGCAGC------------------------------------------------------------------------------------------------------AAC------------------AGCAACAGC----------AG------------------------------------------CCCA-T-TG-----CCG
droGri2 scaffold_15252:12913113-12913281 - CCGCCGC------------TGCTG---GCAAC-----------TC----------------TGGCG-------------T--ACA---GCAT-GGAA-----TGGTTAGC--CAGCA--CCAGC---AA------------------CAACAGCAACAAC------------------------AACAGCAGCA---------------------------------------------------------------GCAACAA----------------------------CAGCAACAACAAC------AACAGCA---GCAGCAACA-------------------------------ACAACAGGTTGGTGGCGCCAC------------------------------------AG----------------------------TGCCTGCAATGCCCAC----------------------------CGCTGC------------------------------------------C-GAC-AT-----AAG
droWil2 scf2_1100000004768:1967453-1967619 - CAACAAC------------AGCAG---CAG---------------------------------------------------------------------------------------------C---AA------------------CA------ACAAC------------------A---------------A---------------------------CAGCAACAGCAGCAGCA------------------GCAACAACAACAGCAGCAGCAGCAGCA-------ACAACAGCAGCAAC------AAC---A---GCAGCA---------------------GCAAC-------AACA------------------ACAACAGCCGCCAGCTCATCAGCAGGTGCCGCCAGGAG----------------------------CTACACCACCACCTGG----------------------------CAT-------------------------------------------------T-GC-----CAT
dp5 2:5779370-5779545 + AAGCAGC------------AGCAG---A-ACA--------------G------C--A-TCCAGACG------------CA--GCTC--TCAC-AGAT-----CAGTGCTGCCGCCGC-----------------------------------ACATCATC------------------------------------------------------------------AACAGCAGCAACAGCAACAACAACAGCA---GCAACAGCAGC----------------AGCAGCAACAACAGCAACAAC------AAC---A---GCAGCAGGCCCAGG---------CGCAGGCCA-----------------------------------------------------------------AG----------------------------CACC------------------------AGCAACAGC---------TTACG---G-----------------------------------------C-GG-----C--
droPer2 scaffold_0:634997-635166 + CAGCAGC------------AGCAA---CAGCA-----------GCAG-------------------------------------------------------------------------------------------------------CAGCAACAAC---------------------------AGCAGCAG------C------------A---GC------AACATCAGCAACA---------------GCAACATCAGCAGC----------------AACAGCAGCAGCAGCAACAAC------AGC---A---GCAGCAGCAACATC------AGCAACAGCAAC-------AGCA------------------ACAA-----------------------------------------------------------------------------C----------------------------AGCAGCT---GCAGCCCCCC---C---CAAGACCC------------CC-A-A-TGACGCTCAG
droAna3 scaffold_13337:15485093-15485286 + CCGCCC----AGCAGGTGCAGCA-------------------------------------GCAGC-AGGTCGCCACCG-C-----------------------------C-------------C---AC------------------CAGCAGCAACATC------------------------------------------------------------------AACAGCAGCAGCAGCAACAACAGCAGCA---GCAACAACAAC----------------AACAGCAACAGCAGCAACAAC------AAC---A---CCAGCAGCAACAGC----------------------------AGCAG--------------------------------------------------------------------------------------CACCAAC---------------AACAACAGC---ACGC------------------CGCCGTAGCCGCCGCCGC-AGCCGCCGCTTC-A-C-AT-----CCA
droBip1 scf7180000395751:160838-161015 + ATGCAGC------TGGCGCAGCA-------------------------------------G--------------------------------------------------------------C---AACAGCAGGCTCTC---------CAGCAACACC---------------------------ACCAGCAC------C------------T---CC------AACAGCAGCACCA---------------GCA----------------------------------GCAACAGCAACAAC------AAC---A---GCAGCAGCAA---C------AACAACAGCAGCA-------GCAGCAG-------------------------------------------------------------AAGC----------------------TGA------------------AGCAGTCGC---AGGCGGCAAGTGCGGCGGCCAACA---A---CAAGGCCA------------CC-A-A-TCT----C-A
droKik1 scf7180000302469:377769-377942 + ATGCCAC------------TGCCA---CCACC-----------CCTG---------G--------------------------------------------------------------CCAGC---GG------------------CAGTTGCAGCAAC------------------AATAGCAGCAGCAGCAG------C------------A---GC------------------------AACAGCACCG---CCGGCGTTGGC----------------A------TTGGCGGCGGCAAC------AACAGCAGCAGCAACAACAATTCC---------GGCAGCAA-----------------------------------------------------------------------------TTGTGGAACGCTC-------------AAG------------------AGCAATGCC---AAGCTGCTGCC---G-----------------------------------------C-TG-----CAG
droFic1 scf7180000452523:91018-91195 - CCGCCGC------------CGCCT---CTGCC-----------TCCG--CCAGC---GTCT-----------------C--------------------------------------AGCCAA------------------------CAGCAGCAACATCAA---------------CAG------CATCAGCAA---------------------------CATCAACAGCAGCAACA------------------GCAACAACAACGCCAGCAGCAGCAGCA-ACACGAACAACAGCAACAAC------AAC---A---GCGGCAG------------------C-----------------------------------------------------------------AGTCCGAG----------------------------CAGCAGCAGCAACCAC----------------------------AACAGCA---A-----------------------------------------T-CT-----CAA
droEle1 scf7180000490546:1185113-1185294 + ACGCGGC------------AGCAG---CAGT------------------------------------------------------------------------------G-------------C---AG------------------CAGCAGCAACATCAA---------------CAG---------CA---------------------------GC------AACTGCAGCAGCA---------GCAGCA---GCAACAGCAGA------A----------------GCAGC---AGCAAC------TGA---A---GTGGCAGCAACATC------TACGACAGCAAC-------AACA------------------ACAACAAC------------------------TA---GCAGCAGCGACGAGGAAACGCTC-----GA------AACGCTC----------------------------------------------ACAATTAT------AACCA------------CC-A-C-CAT----C-A
droRho1 scf7180000780067:96054-96238 - CCGCCCC------------TGTC---------CTCCGCGGACCG--GCATCAT--------CGACG------------CA--TCA---TCG--AAAG-----TTGCTGGC--GGGTG--ACAG------------------------CAGCAGCAACAGCAA---------------C------AGCAACAGCAA------C------------A---GC------AACAGCAGCAGCA---------------GCA---GCAGCAGCAGCAACAGCAGCAGCA-ATATC----------G---C------AAC-------ACAGCAGCAACATT------GGCAGCAGGAAA-------AGCA------------------ACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-AG-----CCG
droBia1 scf7180000302428:5892590-5892761 + TCGCAAC------------AGCAGCAGATCCA--------------G------C--A---A--------------------------------------------------------------C---AA------------------CAGTTGCAACACCAACAGCAGCTGCAGCAGCAA---------CA---------------------------ACAGCAGCAGCAACAGCAGCA------------------ACAACAACAAC-------------------------A---------------------------GCAGCAGCAA---AAACAACAGCAACAACAACAACAACA-GCAGCAGC-------------------------------------------AGCAG----------------------------------------CAACAGCAGGTGCAGCAACAACAACAGC-----------------------------------------------------------------------
droTak1 scf7180000414445:283437-283600 + CAGCAGC------------AGCAT---ATGCA-----------ACAG----------------------------------------------------------------------------------------------------CAGCAGCAACACCAA---------------------------CAGCAG------C------------AGCAACAACATCAACAGCAGCAGCA------------------GCAACATCAAC-------------------------------AGCA------------------GCAGCAGCAGCATC------AACAACAGCAGCAGCAACA-ACATCAGAGC-----------------------------------------ATTGG------------------AATGTTT-------------GATGCCA----------------------------------------------ACGA----------GGTTA------------AC-GAT-GT-----CAT
droEug1 scf7180000409466:1386314-1386500 + CCAGCAT-----------CAT-CC---CAGCC-----------TGGC--GCTGCCT-GGCTTGCCA-------------C--CCG-CTG--TCGAGG-----TGGTGGAG-------------T---TG------------------CAACTGCAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAGCAACAACAGCAGCAGCATCTGCA-------ACA-C---AGCAGC------A---------GCAGTAGCAGCCCC-------------------------------AAGCTGGCGAC-CCCC------------------------------------GG----------------------------CGACAGCAGC------------------AGCAACA----------CCTC------------------------------------------CT-CCT-AT-----CAG
dm3 chrX:7936562-7936747 - TTGCAGC------------AGCAA---CACCA-----------TCAG---CAGC--AGCAA--------------------------------------------------------------C---AG---CAGACGCACCAGCAACAGCAGCAACATCAG---------------CAG---------CA---------------------------ACACCACCAACAGCAGCAGCA------------------GCAGCAACTAACCCAGCAGCAG-------CTGCAGCAGCAGCAACAAC------AACAGCA---GCAGCAACA-------------------------------AC-------------------------------------------------ATCTCCAA----------------------------CAGCAGCAACACCAAC----------------------------AGCAGCA---C-----------------------------------------C-AT-----CAG
droSim2 2r:6154973-6155177 + CCAGCAG-----------CAGCAA---CAGTA-----------TCGG--GCA---------AGTCA--------AATG-CTCGCT---GCAA-GGAGTAATCTGGTGATG----------------------------------------------CAGC------------------A---------------A---------------------CAGCAGCAGCAACAGCAGCAGCA------------------GCAACACCAGC------A----------------------------------------------ACAGCAGCAA---TACCACCAGCAACAGCAACAGCAACA-GCAGCAGC-------------------------------------------ACTTGAG----------------------------------------------------------TCTACAGCGATTTGT------------------TGCC--AGCCAAGGCCAGAATTCGGTGCATC-T-CAAT-----CAG
droSec2 scaffold_34:421757-421930 + CAGGTGC------------AACAG---CAACA-----------ACAT---CAGC--A--------------------------------------------------------------CCAGC---AC------------------CAGGTGCAACAGC------------------------------------------------------------------AACAGCAGCATCAGCAGCAGCAGCAGCA---GCAACAGCAAC-------------------------------AACA------------------ACAACAACAGCAAC------AACAACAACAACAACAACA-ACAACAGGT--GCAGC-----------------------------------ACCAACAG----------------------------CAGCAGCAAAAGCTTC----------------------------AGTTGCA---G-----------------------------------------C-AA-----CAA
droYak3 X:20381576-20381762 - CATCAGC------------TCAAG---TCCCC-----------GCAG---CAGC--A--------------------------------------------------------------CCAGC---AA------------------CAGCTGCAGCAGC------------------------------------------------------------------AACAGCTGCAGCA------------------GCACCAGCAGC----------------AGCAGCACCAGCAGCAGCAAC------ACC---A---GCAGCAGCAACTTC------ACCAGCAGCAAC-------AGCA------------------ACATCATC-------------------------A---GCAGCAA---CAGCAAAACGAATCGGATGT------CGTGCCC----------------------------------------------ATCA---G---CACGG----------------CCA-T-GG-----ATA
droEre2 scaffold_4784:5601699-5601866 + CCGTCGCCCCAGCAG---CAGCA---------------------------------------------------------------------------------------------------------G------------------CATCAACAACAAC------------------A------ACAGCAGCATCAGCAGCAGCAAAATATGCA---TCACCATC------------------AACATCAGCA---GCAACATATGC----------------A------ACAGCAGCAGCAACAACATCAGC---A---GCAACATCAACAGC------AGCAGCAGCAA------------------------------------------------------------------------------------------------------CATCAACAAC----------------------------AGCAGCA---A-----------------------------------------C-AT-----CAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCGCCGC------------TGCCG---CCGCC-----------TCGG--GCAGC---GGTTCGACA------------CT--ACA---GCAC-GGAT-----TGGTGGGG-------------C---AG------------------CATCAGCAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAACAACAACAGCAGCAACAA-------------------------------------------------------CAGCAACAGCAACAACAACAACAACA-GCAGCAGGTCGGCGGAACTCA------------------------------------GG----------------------------TGCCAGCCATGCCCAC----------------------------AGCCG------------------------------------------CC-GAT-AT-----CAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................GCAC-GGAT-----TGGTGGGG-------------C---AG------------------CATC.....................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000001010
.............................................................CGACA------------CT--ACA---GCAC-GGAT-----T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GTCGGCGGAACTCA------------------------------------GG----------------------------TGCCAGCCATGC................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGTCGGCGGAACTCA------------------------------------GG----------------------------............................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................A---GCAC-GGAT-----TGGTGGGG-------------C---AG------------------CAT......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................A-GCAGCAGGTCGGCGGAACTC...............................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................C-GGAT-----TGGTGGGG-------------C---AG------------------CATCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................A---GCAC-GGAT-----TGGTGGGG-------------C---AG------------------CATCA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
..............................................................GACA------------CT--ACA---GCAC-GGAT-----TGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...........................................TCGG--GCAGC---GGTTCGACA------------CT--ACA---GCAC-GG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCATGCCCAC----------------------------AGCCG------------------------------------------CC-..............2011.001000000000000000000000100000000000000000000000000000000000000000
.................................................GCAGC---GGTTCGACA------------CT--ACA---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCATGCCCAC----------------------------AGCCG------------------------------------------CC-GAT-AT-----...2511.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................................................................................CAACAACAACA-GCAGCAGGTCG........................................................................................................................................................................................2230.331010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AACAGCAGCAACAA-------------------------------------------------------CAGCAACAGCAAC.................................................................................................................................................................................................................2790.111000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACA-GCAGC..............................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.............................................................................................................G-------------C---AG------------------CATCAGCAACAGC------------------------------------------------------------------AACA......................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000001000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................GCAGCA------------------GCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................24200.102001100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................A------------------GCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AGCAGCAGCA------------------GCAACAACA..................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000020000000000000000000000000000000000
.........................................................................................................................................................CAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAA.......................................................................................................................................................................................................................................................................................................24200.102000000000000000100000000000000000000010000000000000000000000000
........................................................................................................................................................GCAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------...........................................................................................................................................................................................................................................................................................................21200.102000000000000001000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAACAACA-G..................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AACAA-------------------------------------------------------CAGCAACAGCAACA................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ATCAGCAACAGC------------------------------------------------------------------AACAGCAGC.................................................................................................................................................................................................................................................................................................................................21150.071001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AG------------------CATCAGCAACAGC------------------------------------------------------------------AACAGCA...................................................................................................................................................................................................................................................................................................................................22160.061001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................C---AG------------------CATCAGCAACAGC------------------------------------------------------------------AACAG.....................................................................................................................................................................................................................................................................................................................................21180.061000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................AACAACAACAGCAGCAACAA-------------------------------------------------------CAGCAACA......................................................................................................................................................................................................................28190.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACA-GCAGCA.............................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................AGCAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCA........................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACAGCAGCAACAA-------------------------------------------------------CAGCAACAGCA...................................................................................................................................................................................................................24200.051000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACAACAAC.....................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCA........................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACAGCAGCAACAA-------------------------------------------------------CAGCAACA......................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAACA-GCAGCAG............................................................................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CA------------------GCAACAACAACAGCAGCAACAA-------------------------------------------------------CAGC..........................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GCAACAGC------------------------------------------------------------------AACAGCAGCAG...............................................................................................................................................................................................................................................................................................................................19200.051000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACAACAACA-GCA................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................GC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAAC......................................................................................................................................................................................................................................................................................................20200.051000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................ACAGCAGCAGCA------------------GCAACAACA..................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................AGCAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------...........................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................C---AG------------------CATCAGCAACAGC------------------------------------------------------------------AACA......................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GCAGCAGCA------------------GCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AACAA-------------------------------------------------------CAGCAACAGCAACAA...............................................................................................................................................................................................................20200.051000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................GC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAA.......................................................................................................................................................................................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGCAGCAACAA-------------------------------------------------------CAGCAACA......................................................................................................................................................................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CAGCA------------------GCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................ACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAACA.....................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................C------------------------------------------------------------------AACAGCAGCAGCA------------------GCAACAACAACAGC.............................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GCAACAA-------------------------------------------------------CAGCAACAGCAACAACA.............................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................AGCAGCA------------------GCAACAACAACAGCA............................................................................................................................................................................................................................................................................................22200.051000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CAGCAACAA-------------------------------------------------------CAGCAACAGCAAC.................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................ACAGCAGCAGCA------------------GCAACAACAACAGC.............................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GCAGCA------------------GCAACAACAACAGCAGCAAC.......................................................................................................................................................................................................................................................................................26200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................AGCAGCA------------------GCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................CAGCAACAGC------------------------------------------------------------------AACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................22200.051010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AACAACAGCAGCAACAA-------------------------------------------------------CAGCA.........................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AACAACAACAGCAGCAACAA-------------------------------------------------------CAGC..........................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CAACAGCAGCAACAA-------------------------------------------------------CAGCAA........................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................A------------------GCAACAACAACAGCAGCAACAA-------------------------------------------------------CAGC..........................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CAGCAACAGC------------------------------------------------------------------AACAGCAGC.................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GCAGCAACAA-------------------------------------------------------CAGCAACAGCA...................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................AGCAACAA-------------------------------------------------------CAGCAACAGCAACAA...............................................................................................................................................................................................................23200.051000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CAACAA-------------------------------------------------------CAGCAACAGCAACAACAAC...........................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAA.......................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAACA-GC.................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGCAGCAACAA-------------------------------------------------------CAGCAACAGCA...................................................................................................................................................................................................................23200.051000000000000000010000000000000000000000000000000000000000000000
droMoj3
CGGCTC----A---------GTGC---CGCC-CGCTGCG--CTG--CCGCCAC--------CGTCG------------C---TC---------------------------------AGCTCTCAGCAG---------CAA------CAGCAGCAGCAGC------------------------------------------------------------------AACAGCAGCAGCAGCAACAACAACAGCA---GCAACAGCAGC----------------ACCAGCAACAGCAGCAACAAC------AGC---A---GCAGCAGCAACTGC---------AACAGCAGC------------------------------------------------------------------------------------------------------AAC------------------AGCAACAGC----------AG------------------------------------------CCCA-T-TG-----CCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................AACAGCAGC----------------ACCAGCAACAGCAGCA................................................................................................................................................................................................................................................................2520.501000010
......................................................................................................................................................................................................................................................CAACAGCA---GCAACAGCAGC----------------ACC.............................................................................................................................................................................................................................................................................2280.252000020
......................................................................................................................................................................................................................................................................AGCAGC----------------ACCAGCAACAGCAGCAACA.............................................................................................................................................................................................................................................................2550.201100000
....................................................................................................................................................................................................................................................................................................CAGCAGCAACAAC------AGC---A---GC.........................................................................................................................................................................................................................................19200.204000040
..................................................................................................................................................................................................................................................................CAACAGCAGC----------------ACCAGCAAC.......................................................................................................................................................................................................................................................................1990.111000010
.........................................................................................................................................................................................................................................................................................................................................AACTGC---------AACAGCAGC------------------------------------------------------------------------------------------------------AAC------------------AG..............................................................................2090.111000010
...........................................................................................................................................AA------CAGCAGCAGCAGC------------------------------------------------------------------AACAGC....................................................................................................................................................................................................................................................................................................................................21200.102200000
.........................................................................................................................................................................................................................................................CAGCA---GCAACAGCAGC----------------ACC.............................................................................................................................................................................................................................................................................19200.102000020
.................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAAC------AGC---...............................................................................................................................................................................................................................................19200.102200000
........................................................................................................................................................................................................................................................ACAGCA---GCAACAGCAGC----------------ACCA............................................................................................................................................................................................................................................................................21100.101000010
................................................................................................................................................................................................................................................................................................GCAACAGCAGCAACAAC------AGC---...............................................................................................................................................................................................................................................20200.051000010
....................................................................................................................................................................................................................................................AACAACAGCA---GCAACAGCAGC----------------................................................................................................................................................................................................................................................................................21200.051000010
............................................................................................................................AGCAG---------CAA------CAGCAGCAGCAGC------------------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................22200.051000010
.......................................................................................................................................................................................................................................................................................................CAGCAACAAC------AGC---A---GCAGCAGCA..................................................................................................................................................................................................................................23200.051100000
.........................................................................................................................................................................................................................................................................................................................................................ACAGCAGC------------------------------------------------------------------------------------------------------AAC------------------AGCAACAGC----------A............................................................21200.051100000
........................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAGCA---GCAACAG....................................................................................................................................................................................................................................................................................................29200.051000010
.........................................................................................................................................................................................................................................................................................................GCAACAAC------AGC---A---GCAGCA.....................................................................................................................................................................................................................................18200.051000010
....................................................................................................................................................................................................................................................................................................CAGCAGCAACAAC------AGC---A---GCAGC......................................................................................................................................................................................................................................22200.051000010
.........................................................................................................................................................................................................................................GCAGCAGCAACAACAACAGCA---GCAC.......................................................................................................................................................................................................................................................................................................25200.051000010
..................................................................................................................................................................................................................................................ACAACAACAGCA---GCAACA.....................................................................................................................................................................................................................................................................................................18200.051000010
...........................................................................................................................CAGCAG---------CAA------CAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
.............................................................................................................................................................................................................................................................................................................................A---GCAGCAGCAACTGC---------AACA................................................................................................................................................................................................................19200.051100000
..................................................................................................................................................................................................................................................ACAACAACAGCA---GCAACAGC...................................................................................................................................................................................................................................................................................................20200.051000010
..............................................................................................................................................................................................................................................AGCAACAACAACAGCA---GCAACAGC...................................................................................................................................................................................................................................................................................................24200.051000010
.............................................................................................................................................................................................................................................................................................................................................GC---------AACAGCAGC------------------------------------------------------------------------------------------------------AAC------------------AGCAACA.........................................................................21200.051100000
............................................................................................................................................................................................................................................GCAGCAACAACAACAGCA---GC.........................................................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................AGCAG---------CAA------CAGCAGCAGCAGC------------------------------------------------------------------AAC.......................................................................................................................................................................................................................................................................................................................................24200.051001000
.........................................................................................................................................................................................................................................GCAGCAGCAACAACAACAGCA---...........................................................................................................................................................................................................................................................................................................21200.051100000
..................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................19200.051010000
................................................................................................................................................................................................................................................CAACAACAACAGCA---GCAACAGCAGC----------------................................................................................................................................................................................................................................................................................25200.051010000
droGri2
CCGCCGC------------TGCTG---GCAAC-----------TC----------------TGGCG-------------T--ACA---GCAT-GGAA-----TGGTTAGC--CAGCA--CCAGC---AA------------------CAACAGCAACAAC------------------------AACAGCAGCA---------------------------------------------------------------GCAACAA----------------------------CAGCAACAACAAC------AACAGCA---GCAGCAACA-------------------------------ACAACAGGTTGGTGGCGCCAC------------------------------------AG----------------------------TGCCTGCAATGCCCAC----------------------------CGCTGC------------------------------------------C-GAC-AT-----AAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................ACAGGTTGGTGGCGCCAC------------------------------------A.........................................................................................................................................1911.00110
.......................................................................................................GGTTAGC--CAGCA--CCAGC---AA------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
droWil2
CAACAAC------------AGCAG---CAG---------------------------------------------------------------------------------------------C---AA------------------CA------ACAAC------------------A---------------A---------------------------CAGCAACAGCAGCAGCA------------------GCAACAACAACAGCAGCAGCAGCAGCA-------ACAACAGCAGCAAC------AAC---A---GCAGCA---------------------GCAAC-------AACA------------------ACAACAGCCGCCAGCTCATCAGCAGGTGCCGCCAGGAG----------------------------CTACACCACCACCTGG----------------------------CAT-------------------------------------------------T-GC-----CATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................GGAG----------------------------CTACACCACCACCTGG----------------------------CAT-------------------------------------------------T-GC-----...2611.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................CTCATCAGCAGGTGCCGCCAGGAG----------------------------CT..........................................................................................................2611.00101000
.......................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAGCA-------.........................................................................................................................................................................................................................................................................21200.35700070
...................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAGCAGCA-------.........................................................................................................................................................................................................................................................................25200.10200020
................................................................................................................................................................................................................................GCAACAGCAGCAGCA------------------GCAACA.....................................................................................................................................................................................................................................................................................................21200.10200002
...............................................................................................................................................................C------------------A---------------A---------------------------CAGCAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................19200.10200002
.........................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCA-------AC.......................................................................................................................................................................................................................................................................21200.10200020
..............................................................................................................................................................................................................................................A------------------GCAACAACAACAGCAGCAGCA......................................................................................................................................................................................................................................................................................22200.10200020
.............................................................................................................................................................................................................................................................................................................................................................CAAC-------AACA------------------ACAACAGCCGC...................................................................................................................................................................19120.08100010
...........................................................................................................................................................................................................................................................................................A-------ACAACAGCAGCAAC------AAC---A---GC.........................................................................................................................................................................................................................................21200.05100010
...................................................................................................................................................................................................................................................................................................ACAACAGCAGCAAC------AAC---A---GCAGC......................................................................................................................................................................................................................................23200.05100010
........................................................................................................................................................................................................................................AGCAGCA------------------GCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................25200.05101000
..................................................................................................................................................................................................................................................................................................................................CAGCA---------------------GCAAC-------AACA------------------ACAACAG.......................................................................................................................................................................21200.05100001
....................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAGCAGCA-------AC.......................................................................................................................................................................................................................................................................26200.05100010
.....................CAG---CAG---------------------------------------------------------------------------------------------C---AA------------------CA------ACAAC------------------A---------------A---------------------------CAG...........................................................................................................................................................................................................................................................................................................................................21200.05100001
.......................................................................................................................................................................................................................................CAGCAGCA------------------GCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................26200.05100010
......................AG---CAG---------------------------------------------------------------------------------------------C---AA------------------CA------ACAAC------------------A---------------A---------------------------C.............................................................................................................................................................................................................................................................................................................................................18200.05100010
..................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................23200.05100100
..............................................................................................................................................................................................................................................A------------------GCAACAACAACAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................24200.05100100
...................................................................................................................................................................................................................................................................................................................................AGCA---------------------GCAAC-------AACA------------------ACAAC.........................................................................................................................................................................18200.05100010
......................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................21200.05100100
........................................................................................................................................................................................................................................................................................AGCA-------ACAACAGCAGCAAC------A....................................................................................................................................................................................................................................................19200.05100010
..............................................................................................................................................................................................................................................A------------------GCAACAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................21200.05100010
..................................................................................................................................................................................................A---------------------------CAGCAACAGCAGCAGCA------------------GCAACA.....................................................................................................................................................................................................................................................................................................24200.05100010
...........................................................................................................................................................ACAAC------------------A---------------A---------------------------CAGCAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................23200.05100010
.......................................................................................................................................................................................................................................CAGCAGCA------------------GCAACAACAACAGCA............................................................................................................................................................................................................................................................................................23200.05101000
dp5
AAGCAGC------------AGCAG---A-ACA--------------G------C--A-TCCAGACG------------CA--GCTC--TCAC-AGAT-----CAGTGCTGCCGCCGC-----------------------------------ACATCATC------------------------------------------------------------------AACAGCAGCAACAGCAACAACAACAGCA---GCAACAGCAGC----------------AGCAGCAACAACAGCAACAAC------AAC---A---GCAGCAGGCCCAGG---------CGCAGGCCA-----------------------------------------------------------------AG----------------------------CACC------------------------AGCAACAGC---------TTACG---G-----------------------------------------C-GG-----C--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................GC----------------AGCAGCAACAACAGCAACAAC------AAC---...............................................................................................................................................................................................................................................2670.1410010000000
......................................................................................................................................................................................................................................................CAACAGCA---GCAACAGCAGC----------------A...............................................................................................................................................................................................................................................................................20200.1020200000000
..........................................................................................................................................................................................................................................CAACAGCAACAACAACAGCA---GCAAC......................................................................................................................................................................................................................................................................................................25100.1010010000000
..................................................................................................................................................................................................................................................................CAACAGCAGC----------------AGCAGCAACA......................................................................................................................................................................................................................................................................20200.1020000200000
.....................................................................................................................................................................................................................................................ACAACAGCA---GCAACAGCAGC----------------AGCAG...........................................................................................................................................................................................................................................................................25110.0910000100000
.............................................................................................................................................................................................................................................CAGCAACAACAACAGCA---GCAACAG....................................................................................................................................................................................................................................................................................................24130.0810100000000
...............................................................................................................................................................................................................................................GCAACAACAACAGCA---GCAACAGCA..................................................................................................................................................................................................................................................................................................24140.0710010000000
...................................................................................................................................................................................................................................................................................................ACAACAGCAACAAC------AAC---A---GCAGC......................................................................................................................................................................................................................................23140.0710100000000
.................................................................................................................................................................................................................................................................................................CAACAACAGCAACAAC------AAC---A---GC.........................................................................................................................................................................................................................................22200.0510010000000
.......................................................................................................................................................................................................................................................................................................CAGCAACAAC------AAC---A---GCAGCAG....................................................................................................................................................................................................................................21200.0510100000000
.................................................................................................................................................................................................................................................AACAACAACAGCA---GCAACAGCA..................................................................................................................................................................................................................................................................................................22200.0510001000000
...............................................................................................................................................................C------------------------------------------------------------------AACAGCAGCAACAGCAACAACA....................................................................................................................................................................................................................................................................................................................23200.0510100000000
............................................................................................................................................................................................................................................................CA---GCAACAGCAGC----------------AGCAGCA.........................................................................................................................................................................................................................................................................20200.0510000000100
.........................................................................................................................................................................................................................................................................AGC----------------AGCAGCAACAACAGCA................................................................................................................................................................................................................................................................19200.0510000100000
...................................................................................................................................................................................................................................................CAACAACAGCA---GCAACAGCAG.................................................................................................................................................................................................................................................................................................21200.0510100000000
........................................................................................................................................................................................................................................AGCAACAGCAACAACAACAGCA---...........................................................................................................................................................................................................................................................................................................22200.0510100000000
.................................................................................................................................................................................................................................................................................................CAACAACAGCAACAAC------AAC---A---...........................................................................................................................................................................................................................................20200.0510000010000
......................................................................................................................................................................................................................................................................AGCAGC----------------AGCAGCAACAACAGCAA...............................................................................................................................................................................................................................................................23200.0510000100000
............................................................................................................................................................................................................................................................CA---GCAACAGCAGC----------------AGCAGCAAC.......................................................................................................................................................................................................................................................................22200.0510010000000
........................................................................................................................................................................................................................................................................................................AGCAACAAC------AAC---A---GCAGCA.....................................................................................................................................................................................................................................19200.0510100000000
.................................................................................................................................................................................................................................................................................................CAACAACAGCAACAAC------AAC---...............................................................................................................................................................................................................................................19200.0510100000000
droPer2
CAGCAGC------------AGCAA---CAGCA-----------GCAG-------------------------------------------------------------------------------------------------------CAGCAACAAC---------------------------AGCAGCAG------C------------A---GC------AACATCAGCAACA---------------GCAACATCAGCAGC----------------AACAGCAGCAGCAGCAACAAC------AGC---A---GCAGCAGCAACATC------AGCAACAGCAAC-------AGCA------------------ACAA-----------------------------------------------------------------------------C----------------------------AGCAGCT---GCAGCCCCCC---C---CAAGACCC------------CC-A-A-TGACGCTCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................ATCAGCAGC----------------AACAGCAGCAGCAGC.................................................................................................................................................................................................................................................................2490.111010000
......................................................................................................................................................................................................................................................................AGCAGC----------------AACAGCAGCAGCAGC.................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................CAACAAC---------------------------AGCAGCAG------C------------A---GC------AA........................................................................................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................................................................................................................................................................GCAACAAC------AGC---A---GCAGCAGCAACA...............................................................................................................................................................................................................................24200.051001000
............................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACA.............................................................................................................................................................................................................................................................19200.051010000
........................................................................................................................................................GCAACAAC---------------------------AGCAGCAG------C------------A---GC------..........................................................................................................................................................................................................................................................................................................................................20200.051001000
................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAAC------AGC---A---GCA........................................................................................................................................................................................................................................24200.051001000
.............................GCA-----------GCAG-------------------------------------------------------------------------------------------------------CAGCAACAAC---------------------------AGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................24200.051001000
......C------------AGCAA---CAGCA-----------GCAG-------------------------------------------------------------------------------------------------------CAGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
..........................................................................................................................................................................................................................................................................................................CAACAAC------AGC---A---GCAGCAGCAA.................................................................................................................................................................................................................................21200.051001000
........................................................................................................................................................GCAACAAC---------------------------AGCAGCAG------C------------A---GC------AACA......................................................................................................................................................................................................................................................................................................................................24200.051001000
.......................................................................................................................................................AGCAACAAC---------------------------AGCAGCAG------C------------A---GC------..........................................................................................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................................................................................................................................AGC----------------AACAGCAGCAGCAGCAA...............................................................................................................................................................................................................................................................20200.051001000
........................................................................................................................................................................................................................................................................................................AGCAACAAC------AGC---A---GCAGCAGC...................................................................................................................................................................................................................................21200.051001000
droAna3
CCGCCC----AGCAGGTGCAGCA-------------------------------------GCAGC-AGGTCGCCACCG-C-----------------------------C-------------C---AC------------------CAGCAGCAACATC------------------------------------------------------------------AACAGCAGCAGCAGCAACAACAGCAGCA---GCAACAACAAC----------------AACAGCAACAGCAGCAACAAC------AAC---A---CCAGCAGCAACAGC----------------------------AGCAG--------------------------------------------------------------------------------------CACCAAC---------------AACAACAGC---ACGC------------------CGCCGTAGCCGCCGCCGC-AGCCGCCGCTTC-A-C-AT-----CCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAACA....................................................................................................................................................................................................................................................................................................................22201.052111000010
.................GCAGCA-------------------------------------GCAGC-AGGTCGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000001
...............................................................................................................................................................................................................................................GCAACAACAGCAGCA---GCAACAACAAC----------------................................................................................................................................................................................................................................................................................2630.331010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCGC-AGCCGCCGC..................1830.331000100
.......................................................................................................................................................................................................................................................................................................................AAC---A---CCAGCAGCAACAGC----------------------------AGCA.............................................................................................................................................................................................2240.251010000
........................................................................................................................................................GCAACATC------------------------------------------------------------------AACAGCAGCAGCAGCAAC........................................................................................................................................................................................................................................................................................................................2640.251100000
............................................................................................................................................................................................................................................GCAGCAACAACAGCAGCA---GC.........................................................................................................................................................................................................................................................................................................20200.255050000
...............................................................................................................................................................................................................................................................................................................AC------AAC---A---CCAGCAGCAACAG..............................................................................................................................................................................................................................1950.201010000
.....................................................................................................................................................................................................................................................ACAGCAGCA---GCAACAACAAC----------------AACAGC..........................................................................................................................................................................................................................................................................2660.171010000
.........................................................................................................................................................................................................................................................................AAC----------------AACAGCAACAGCAGCAA...............................................................................................................................................................................................................................................................20160.132101000
..................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAACAGC..................................................................................................................................................................................................................................................................................................................24200.102110000
.......................................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCAGC...............................................................................................................................................................................................................................................................................................................22200.102020000
....................................................................................................................................................................................................................................................AACAGCAGCA---GCAACAACAAC----------------................................................................................................................................................................................................................................................................................21200.102020000
...........................................................................................................................................................................................................................................................GCA---GCAACAACAAC----------------AACAG...........................................................................................................................................................................................................................................................................19200.102000002
.............................................................................................................................................................ATC------------------------------------------------------------------AACAGCAGCAGCAGCAA.........................................................................................................................................................................................................................................................................................................................20100.101010000
..........................................................................................................................................................................................................................................................................AC----------------AACAGCAACAGCAGCAACA.............................................................................................................................................................................................................................................................21140.071010000
......................................................................................................................................................................................................................................................................AACAAC----------------AACAGCAACAGCAGC.................................................................................................................................................................................................................................................................21140.071010000
.............................................................................................................................................................................................................................................................A---GCAACAACAAC----------------AACAGCAAC.......................................................................................................................................................................................................................................................................21150.071010000
............................................................................................................................................................CATC------------------------------------------------------------------AACAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................20170.061000010
.............................................................................................................................................................ATC------------------------------------------------------------------AACAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................18200.051010000
.....................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAGCAGCA---...........................................................................................................................................................................................................................................................................................................25200.051000001
......................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAGCAGC...............................................................................................................................................................................................................................................................................................................23200.051010000
............................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACA.............................................................................................................................................................................................................................................................19200.051010000
......................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAGC..................................................................................................................................................................................................................................................................................................................20200.051010000
.............................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAACAAC------.....................................................................................................................................................................................................................................................20200.051010000
...........................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCA---GC.........................................................................................................................................................................................................................................................................................................21200.051010000
...............................................................................................................................................................C------------------------------------------------------------------AACAGCAGCAGCAGCAACAACAGC..................................................................................................................................................................................................................................................................................................................25200.051000001
........................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCAGCA---GC.........................................................................................................................................................................................................................................................................................................24200.051000001
..................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGC----------------------------AGCAG--------------------------------------------------------------------------------------CA....................................................................................................20200.051100000
...................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACAACAGC..................................................................................................................................................................................................................................................................................................................23200.051010000
...................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACAA......................................................................................................................................................................................................................................................................................................................19200.051100000
......................................................................................................................................................................................................................................................CAGCAGCA---GCAACAACAAC----------------AACA............................................................................................................................................................................................................................................................................23200.051100000
..................................................................................................................................................................................................................................................................................................AACAGCAGCAACAAC------AAC---A---...........................................................................................................................................................................................................................................19200.051001000
..............................................................................................................................................................................................................................................AGCAACAACAGCAGCA---GCAAC......................................................................................................................................................................................................................................................................................................21200.051000001
...................................................................................................................................................................................................................................................CAACAGCAGCA---GCAACAACAAC----------------A...............................................................................................................................................................................................................................................................................23200.051010000
...........................................................................................................................................................................................................................................................................C----------------AACAGCAACAGCAGCAAC..............................................................................................................................................................................................................................................................19200.051010000
.....................................................................................................................................................................................................................................................ACAGCAGCA---GCAACAACAAC----------------................................................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................18200.051100000
..................................................................................................................................................................................................................................................ACAACAGCAGCA---GCAACA.....................................................................................................................................................................................................................................................................................................18200.051010000
..................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................19200.051010000
.................................................................................................................................................................................................................................................AACAACAGCAGCA---GCAACA.....................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
ATGCAGC------TGGCGCAGCA-------------------------------------G--------------------------------------------------------------C---AACAGCAGGCTCTC---------CAGCAACACC---------------------------ACCAGCAC------C------------T---CC------AACAGCAGCACCA---------------GCA----------------------------------GCAACAGCAACAAC------AAC---A---GCAGCAGCAA---C------AACAACAGCAGCA-------GCAGCAG-------------------------------------------------------------AAGC----------------------TGA------------------AGCAGTCGC---AGGCGGCAAGTGCGGCGGCCAACA---A---CAAGGCCA------------CC-A-A-TCT----C-ASizeHit CountTotal NormTotal
No Reads
droKik1
ATGCCAC------------TGCCA---CCACC-----------CCTG---------G--------------------------------------------------------------CCAGC---GG------------------CAGTTGCAGCAAC------------------AATAGCAGCAGCAGCAG------C------------A---GC------------------------AACAGCACCG---CCGGCGTTGGC----------------A------TTGGCGGCGGCAAC------AACAGCAGCAGCAACAACAATTCC---------GGCAGCAA-----------------------------------------------------------------------------TTGTGGAACGCTC-------------AAG------------------AGCAATGCC---AAGCTGCTGCC---G-----------------------------------------C-TG-----CAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCGCCGC------------CGCCT---CTGCC-----------TCCG--CCAGC---GTCT-----------------C--------------------------------------AGCCAA------------------------CAGCAGCAACATCAA---------------CAG------CATCAGCAA---------------------------CATCAACAGCAGCAACA------------------GCAACAACAACGCCAGCAGCAGCAGCA-ACACGAACAACAGCAACAAC------AAC---A---GCGGCAG------------------C-----------------------------------------------------------------AGTCCGAG----------------------------CAGCAGCAGCAACCAC----------------------------AACAGCA---A-----------------------------------------T-CT-----CAASizeHit CountTotal NormTotal
No Reads
droEle1
ACGCGGC------------AGCAG---CAGT------------------------------------------------------------------------------G-------------C---AG------------------CAGCAGCAACATCAA---------------CAG---------CA---------------------------GC------AACTGCAGCAGCA---------GCAGCA---GCAACAGCAGA------A----------------GCAGC---AGCAAC------TGA---A---GTGGCAGCAACATC------TACGACAGCAAC-------AACA------------------ACAACAAC------------------------TA---GCAGCAGCGACGAGGAAACGCTC-----GA------AACGCTC----------------------------------------------ACAATTAT------AACCA------------CC-A-C-CAT----C-ASizeHit CountTotal NormTotal
No Reads
droRho1
CCGCCCC------------TGTC---------CTCCGCGGACCG--GCATCAT--------CGACG------------CA--TCA---TCG--AAAG-----TTGCTGGC--GGGTG--ACAG------------------------CAGCAGCAACAGCAA---------------C------AGCAACAGCAA------C------------A---GC------AACAGCAGCAGCA---------------GCA---GCAGCAGCAGCAACAGCAGCAGCA-ATATC----------G---C------AAC-------ACAGCAGCAACATT------GGCAGCAGGAAA-------AGCA------------------ACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------C-AG-----CCGSizeHit CountTotal NormTotal
No Reads
droBia1
TCGCAAC------------AGCAGCAGATCCA--------------G------C--A---A--------------------------------------------------------------C---AA------------------CAGTTGCAACACCAACAGCAGCTGCAGCAGCAA---------CA---------------------------ACAGCAGCAGCAACAGCAGCA------------------ACAACAACAAC-------------------------A---------------------------GCAGCAGCAA---AAACAACAGCAACAACAACAACAACA-GCAGCAGC-------------------------------------------AGCAG----------------------------------------CAACAGCAGGTGCAGCAACAACAACAGC-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGCAGC------------AGCAT---ATGCA-----------ACAG----------------------------------------------------------------------------------------------------CAGCAGCAACACCAA---------------------------CAGCAG------C------------AGCAACAACATCAACAGCAGCAGCA------------------GCAACATCAAC-------------------------------AGCA------------------GCAGCAGCAGCATC------AACAACAGCAGCAGCAACA-ACATCAGAGC-----------------------------------------ATTGG------------------AATGTTT-------------GATGCCA----------------------------------------------ACGA----------GGTTA------------AC-GAT-GT-----CATSizeHit CountTotal NormTotal
No Reads
droEug1
CCAGCAT-----------CAT-CC---CAGCC-----------TGGC--GCTGCCT-GGCTTGCCA-------------C--CCG-CTG--TCGAGG-----TGGTGGAG-------------T---TG------------------CAACTGCAACAGC------------------------------------------------------------------AACAGCAGCAGCA------------------GCAGCAACAACAGCAGCAGCATCTGCA-------ACA-C---AGCAGC------A---------GCAGTAGCAGCCCC-------------------------------AAGCTGGCGAC-CCCC------------------------------------GG----------------------------CGACAGCAGC------------------AGCAACA----------CCTC------------------------------------------CT-CCT-AT-----CAGSizeHit CountTotal NormTotal
No Reads
dm3
TTGCAGC------------AGCAA---CACCA-----------TCAG---CAGC--AGCAA--------------------------------------------------------------C---AG---CAGACGCACCAGCAACAGCAGCAACATCAG---------------CAG---------CA---------------------------ACACCACCAACAGCAGCAGCA------------------GCAGCAACTAACCCAGCAGCAG-------CTGCAGCAGCAGCAACAAC------AACAGCA---GCAGCAACA-------------------------------AC-------------------------------------------------ATCTCCAA----------------------------CAGCAGCAACACCAAC----------------------------AGCAGCA---C-----------------------------------------C-AT-----CAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................CAGCAACATCAG---------------CAG---------CA---------------------------ACACCAC...........................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CA------------------GCAGCAACTAACCCAGCAGCAG-------C.............................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CA------------------GCAGCAACTAACCCAGCAGCAG-------..............................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AGCAACTAACCCAGCAGCAG-------CTGCAGCA......................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GCAACATCAG---------------CAG---------CA---------------------------ACACCACCAA........................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CAGCAACA-------------------------------AC-------------------------------------------------ATCTCCAA----------------------------CAGCAG......................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AACA-------------------------------AC-------------------------------------------------ATCTCCAA----------------------------CAGCAGC.....................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................AA---CACCA-----------TCAG---CAGC--AGCAA--------------------------------------------------------------C---AG---C.......................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CAGCAACA-------------------------------AC-------------------------------------------------ATCTCCAA----------------------------CAGCA.......................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGCAGCAGCAGCAACAAC------AACAGCA---G..........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................TAACCCAGCAGCAG-------CTGCAGCAGCAGC.................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCAG---CAGC--AGCAA--------------------------------------------------------------C---AG---CAGACGCACCAG............................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AACAAC------AACAGCA---GCAGCAACA-------------------------------AC-------------------------------------------------ATC.............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AACCCAGCAGCAG-------CTGCAGC.......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AACA-------------------------------AC-------------------------------------------------ATCTCCAA----------------------------CAGCA.......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................A---CACCA-----------TCAG---CAGC--AGCAA--------------------------------------------------------------C---AG---CAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................CAA---CACCA-----------TCAG---CAGC--AGCAA--------------------------------------------------------------C---.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------ATCTCCAA----------------------------CAGCAGCAACACCAAC----------------------------AG..............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------ATCTCCAA----------------------------CAGCAGCAACACCAAC----------------------------AGC.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
CCAGCAG-----------CAGCAA---CAGTA-----------TCGG--GCA---------AGTCA--------AATG-CTCGCT---GCAA-GGAGTAATCTGGTGATG----------------------------------------------CAGC------------------A---------------A---------------------CAGCAGCAGCAACAGCAGCAGCA------------------GCAACACCAGC------A----------------------------------------------ACAGCAGCAA---TACCACCAGCAACAGCAACAGCAACA-GCAGCAGC-------------------------------------------ACTTGAG----------------------------------------------------------TCTACAGCGATTTGT------------------TGCC--AGCCAAGGCCAGAATTCGGTGCATC-T-CAAT-----CAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGAG----------------------------------------------------------TCTACAGCGATTTG.................................................................2112.00200200000000000000
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...............................................................................................................................................................C------------------A---------------A---------------------CAGCAGCAGCAACAGC....................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
...............................................................................................................................................................................................................................AGCAACAGCAGCAGCA------------------GCA........................................................................................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
CAGGTGC------------AACAG---CAACA-----------ACAT---CAGC--A--------------------------------------------------------------CCAGC---AC------------------CAGGTGCAACAGC------------------------------------------------------------------AACAGCAGCATCAGCAGCAGCAGCAGCA---GCAACAGCAAC-------------------------------AACA------------------ACAACAACAGCAAC------AACAACAACAACAACAACA-ACAACAGGT--GCAGC-----------------------------------ACCAACAG----------------------------CAGCAGCAAAAGCTTC----------------------------AGTTGCA---G-----------------------------------------C-AA-----CAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................C------------------------------------------------------------------AACAGCAGCATCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................2540.2511000
...................................................................................................................................................................................................................................................................................................................................AACAACAGCAAC------AACAACAACAACA..........................................................................................................................................................................................................2560.1711000
.............................................................................................................................................................AGC------------------------------------------------------------------AACAGCAGCATCAGCA..........................................................................................................................................................................................................................................................................................................................1970.1410010
......................................................................................................................................................................................................................................GCAGCATCAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................23100.1010010
..................................................................................................................................................................................................................................AACAGCAGCATCAGCAGCA.......................................................................................................................................................................................................................................................................................................................19140.0710001
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..........................................................................................................................................................................................................................................CATCAGCAGCAGCAGCAGCA---...........................................................................................................................................................................................................................................................................................................20200.0510001
....................................................................................................................................................................................................................................................AGCAGCAGCA---GCAACAGCA..................................................................................................................................................................................................................................................................................................19200.0510001
.....................................................................................................................................................................................................................................................GCAGCAGCA---GCAACAGCAAC-------------------------------A................................................................................................................................................................................................................................................................21200.0510010
droYak3
CATCAGC------------TCAAG---TCCCC-----------GCAG---CAGC--A--------------------------------------------------------------CCAGC---AA------------------CAGCTGCAGCAGC------------------------------------------------------------------AACAGCTGCAGCA------------------GCACCAGCAGC----------------AGCAGCACCAGCAGCAGCAAC------ACC---A---GCAGCAGCAACTTC------ACCAGCAGCAAC-------AGCA------------------ACATCATC-------------------------A---GCAGCAA---CAGCAAAACGAATCGGATGT------CGTGCCC----------------------------------------------ATCA---G---CACGG----------------CCA-T-GG-----ATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGGATGT------CGTGCCC----------------------------------------------ATCA---G---CACGG----------------C...............2911.00100100000000
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.....................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC------ACC---A---GCAGC......................................................................................................................................................................................................................................21110.09100100000000
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droEre2
CCGTCGCCCCAGCAG---CAGCA---------------------------------------------------------------------------------------------------------G------------------CATCAACAACAAC------------------A------ACAGCAGCATCAGCAGCAGCAAAATATGCA---TCACCATC------------------AACATCAGCA---GCAACATATGC----------------A------ACAGCAGCAGCAACAACATCAGC---A---GCAACATCAACAGC------AGCAGCAGCAA------------------------------------------------------------------------------------------------------CATCAACAAC----------------------------AGCAGCA---A-----------------------------------------C-AT-----CAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................TCAGCAGCAGCAAAATATGCA---TCACCA............................................................................................................................................................................................................................................................................................................................................2711.0011000000
.......................................................................................................................................................AACAACAAC------------------A------ACAGCAGCATCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...................................................................................................................................................................................................................................................................................................................................AACATCAACAGC------AGCAGCAGCAA------------------------------------------------------------------------------------------------------CATC..................................................................................................2711.0011000000
...........................................................................................................................................................................................................................................................................................................................................................AGCAA------------------------------------------------------------------------------------------------------CATCAACAAC----------------------------AGCAGCA---A-----------------------------------------C-A.........2511.0011000000
....................................................................................................................................................ATCAACAACAAC------------------A------ACAGCAGCATCA.......................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...............................................................................................................................................................................................................................ATC------------------AACATCAGCA---GCAACATATGC----------------A------ACA......................................................................................................................................................................................................................................................................2811.0011000000
.....................................................................................................................................................................................................GCAGCAGCAAAATATGCA---TCACCATC------------------........................................................................................................................................................................................................................................................................................................................2611.0011000000
.......................................................................................................................................................................................................AGCAGCAAAATATGCA---TCACCATC------------------AACA....................................................................................................................................................................................................................................................................................................................2811.0011000000
.................................................................................................................................................................................................................TATGCA---TCACCATC------------------AACATCAGCA---GC.........................................................................................................................................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................................CAACATCAGC---A---GCAACATCAACAGC------A......................................................................................................................................................................................................................2620.5011000000
...................................................................................................................................................................................................................................................................................................................................AACATCAACAGC------AGCAGCAGCAA------------------------------------------------------------------------------------------------------CATA..................................................................................................2720.5011000000
.............................................................................................................................................................AAC------------------A------ACAGCAGCATCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................2220.5011000000
............................................................................................................................................................................................................................................................................................A------ACAGCAGCAGCAACAACATCAGC---A---GCA........................................................................................................................................................................................................................................2820.5011000000
.............................................................................................................................................................................................................................................................................................................................A---GCAACATCAACAGC------AGCAGCAGCAA------------------------------------------------------------------------------------------------------C.....................................................................................................2730.3310000010
.............................................................................................................................................................................................................................................................................................................................................................CAA------------------------------------------------------------------------------------------------------CATCAACAAC----------------------------AGCAGC..........................................................1930.3310100000
.............................................................................................................................................................................................................................................................................................................................................................CAA------------------------------------------------------------------------------------------------------CATCAACAAC----------------------------AGCAGCA---......................................................2030.3310000100
..................................................................................................................................................................................A------ACAGCAGCATCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................2140.2510000010
...........................................................................................................................................................ACAAC------------------A------ACAGCAGCATCA.......................................................................................................................................................................................................................................................................................................................................................................1840.2510000010
......................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACATCAGC---A---...........................................................................................................................................................................................................................................2180.2522000000
..................................................................................................................................................................................................................................................................................................................................CAACATCAACAGC------AGCAGCAGCAA------------------------------------------------------------------------------------------------------CA....................................................................................................2640.2511000000
........................................................................................................................................................................................................................................................................................................AGCAGCAACAACATCAGC---A---...........................................................................................................................................................................................................................................19100.2022000000
.......................................................................................................................................................................................................................................................................................................CAGCAGCAACAACATCAGC---A---G..........................................................................................................................................................................................................................................2160.1711000000
.......................................................................................................................................................AACAACAAC------------------A------ACAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................18200.1532000010
.....................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACATCAGC---...............................................................................................................................................................................................................................................2190.1110001000
...........................................................................................................................................................................................AGCAGCATCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................18200.1022000000
..........................................................................................................................................................................................................................................................................................................CAGCAACAACATCAGC---A---GC.........................................................................................................................................................................................................................................19100.1011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC----------------------------AGCAGCA---A-----------------------------------------C-AT-----CA.20100.1010000010
........................................................................................................................................................................................................................................................................................................AGCAGCAACAACATCAGC---...............................................................................................................................................................................................................................................18130.0810000010
............................................................................................................................................................................................................................................................................................................GCAACAACATCAGC---A---GCA........................................................................................................................................................................................................................................18140.0711000000
...........................................................................................................................................................................................................................................................................C----------------A------ACAGCAGCAGCAACAACA.......................................................................................................................................................................................................................................................20200.0511000000
.....................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACATC.....................................................................................................................................................................................................................................................18200.0510000010
.....................................................................................................................................................................................................................................................................................................................................CATCAACAGC------AGCAGCAGCA.............................................................................................................................................................................................................20200.0510000010
......................................................................................................................................................CAACAACAAC------------------A------ACAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
....................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACATCAGC---C---...........................................................................................................................................................................................................................................23200.0510001000
......................................................................................................................................................................................................................................................................................................................................ATCAACAGC------AGCAGCAGCA.............................................................................................................................................................................................................19200.0510000010

Generated: 05/19/2015 at 04:43 PM