ID:

dvi_10929

 Coordinate:

scaffold_12963:8433315-8433403 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.4 -15.4 -15.4

Flybase annnotation

CDS [Dvir\GJ10242-cds]; exon [dvir_GLEANR_1018:1]; CDS [Dvir\GJ10242-cds]; exon [dvir_GLEANR_1018:2]; intron [Dvir\GJ10242-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------##################################################
GTCGATGACAAGACAGACGCTGCGGGCAATGCCGCAGATGGGCAAACAAGGTGTGTGTGTGTGTGTGTGTGCAAAGTGTTATCCGAGACCAAAATTAAATTGTTACATTTGTTATATATATATATATTCTCTTAAACAGTGAGCTATCTATCGACGAGCAGCGCCTGGCAGTCGGCAGCTGGTGAAATT
**************************************************....(((((((((((((((.(((((.(((....(((.............)))..)))))))))))))))))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 V116
male body		 M028
head
 M061
embryo
 SRR060655
9x160_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 V053
head
 SRR060670
9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
...GATGACAAGACAGACGCT........................................................................................................................................................................ 18 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................GTGTGTGTGTGTGCAAAGTGTTATC.......................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
............ACAGACGCTGCGGGCAATGCC............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....ATGACAAGACAGACGCTGC...................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AGCAGCGCCTGGCAGTCGGCAGC.......... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGACAAGACAGACGCTGCGGG................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAACAAGTGAGCTATCTATCGAC.................................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCCTGGCAGTCGGCAGCTGGT...... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ATCTATCGACGAGCAGCGC......................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATCGACGAGCAGCGCCTGGCAGTCG............... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACGAGCAGCGCCTGGCAGTC................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..CGATGACAAGACAGACGC......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............AGACGCTGCGGGCAATGT............................................................................................................................................................. 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CGATGACAAGACAGACGCTGCGGGC.................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCCTGGCAGTCGGCAGCTGGTGAA... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................ATGGGCAAACAAGGTGTGTGTG.................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................ATCGACGAGCAGCGCCTGGCAGT................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GACAAGACAGACGCTGCGGGC.................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GACGAGCAGCGCCTGGCAGTCGGCAGCTG........ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GAGCTATCTATCGACGAG............................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCGATGACATTACAGACGC......................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ACAAGGCAGAAGCTGCGGG................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................GCGATCTATCCATGAGCAG............................ 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TTAAACAGTGCGATATCCAT...................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........GTCAGACGCAGCGGGCAA................................................................................................................................................................ 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTGGCAGTGGTTAGCTGGT...... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CAGCTACTGTTCTGTCTGCGACGCCCGTTACGGCGTCTACCCGTTTGTTCCACACACACACACACACACACGTTTCACAATAGGCTCTGGTTTTAATTTAACAATGTAAACAATATATATATATATAAGAGAATTTGTCACTCGATAGATAGCTGCTCGTCGCGGACCGTCAGCCGTCGACCACTTTAA
**************************************************....(((((((((((((((.(((((.(((....(((.............)))..)))))))))))))))))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 SRR060670
9_testes_total
 SRR060689
160x9_testes_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060655
9x160_testes_total
 SRR060666
160_males_carcasses_total
 M028
head
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 M047
female body
..........................................................................TGACAAAAGGCACTGGTTTTAATTT.......................................................................................... 25 3 2 102.00 204 54 44 38 20 26 12 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTGACAAAAGGCACTGGTTTTAATTT.......................................................................................... 26 3 2 75.00 150 35 20 43 26 8 8 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAAAAGGCACTGGTTTTAATTT.......................................................................................... 22 2 1 14.00 14 1 5 1 3 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GACAAAAGGCACTGGTTTTAATTT.......................................................................................... 24 3 2 13.00 26 5 15 2 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACAAAAGGCACTGGTTTTAATTT.......................................................................................... 23 2 1 9.00 9 2 2 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACAAAAGGCACTGGTTTTAAT............................................................................................ 21 2 2 4.50 9 0 2 0 0 6 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAAAAGGCACTGGTTTTAAT............................................................................................ 20 2 2 3.50 7 4 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACAAAAGGCACTGGTTTTAATTTT......................................................................................... 24 3 2 3.50 7 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAGATAAGAGTAATTGTCAC................................................ 20 3 14 3.14 44 0 0 0 0 0 0 0 11 0 11 4 5 5 0 2 1 1 1 1 1 1 0
.............................................................................CAAAAGGCACTGGTTTTAATTTT......................................................................................... 23 3 2 3.00 6 2 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACAAAAGGCACTGGTTTTAATT........................................................................................... 22 2 2 1.50 3 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CGCGGACCGTCAGCCGTCGAC........ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGGCACTGGTTTTAATTT.......................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AAAAGGCACTGGTTTTAATTT.......................................................................................... 21 2 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGACAAAAGGCACTGGTTTTAATTTA......................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTGACAATAGGCACTGGTTTTAAT............................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AAAGGCACTGGTTTTAATTT.......................................................................................... 20 2 3 0.67 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAAAAGGCACTGGTTTTAA............................................................................................. 19 2 3 0.67 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGATAAGAGTAATTGTCACTC.............................................. 21 3 5 0.60 3 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAGATAAGAGTAATTGTCACT............................................... 21 3 7 0.57 4 0 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ATAAGAGTAATTGTCACTC.............................................. 19 2 4 0.50 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................AAAAGGCACTGGTTTTAAT............................................................................................ 19 2 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTGTTCCACACACACACACA............................................................................................................................. 20 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................ACAAAAGGCACTGGTTTTAA............................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AAAAGGCACTGGTTTTAATT........................................................................................... 20 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AAAAGGCACTGGTTTTAATTTT......................................................................................... 22 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TTCCACACACACACACACAC.......................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................ACAGACACACACACACGTTT.................................................................................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................TCCACACACACACACACAC.......................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:8433265-8433453 - dvi_10929 GTCGATGACAAGACAGACGCTGCGGGCAATGCCGCAGATGGGCAAACAAGGTGTGT-GTGTGTG------TGTGTGTG-------------------------CA--AAGTGTTATCCGA---------------------GA----------CCAAAATTAAATTGTTA-CATTTGTTATATATA---------TATAT-A--T-------T-------CT----CTTAAACAGTGAGCTATCTATCGACGAGCAGCGCCTGGCAGTCGG------CAGC---TG------GT------------------GAAATT
droMoj3 scaffold_6500:1042341-1042535 - GTCGATGGCAAAACAAACTCTGCGTGCAATGCCGCAGATGAGCAAACAAGGTGTGT-GTGTGTT------TG---------------------------ATTTTA--GTGTGCTTAAATT---------------------GCA---GCATATTTAATTTG------TAA-TA---------------------TTTGTCGT----------TAAT----------TTTGAATAGTGAGTTACTTATCGACGAGCAGCGCCTGCAGAGCCG------TCGT---TG------GTGGCAATGACAGCGTCGTCGAGATT
droGri2 scaffold_15252:11590183-11590369 - GTCGGTGACAAAACAAACGCTGCGCTCGTTGCCGCAAATGGGCAAACAAGGTGTGT-GTGTGTG------TG---------------------------------GAAAGTG-----TGT------------------------GAAATA---TAAATTCT-------AATTA----------------------TAATCGTAATCCTT-----GT----------CTTCTTCAGTGAGCTATTTATCGACAAGCAGCGCCTGGCGGTCAG------CGGT---AG------GTGGCAACGATAGTGTTGTGGAGATT
droWil2 scf2_1100000004521:1804359-1804581 + GTCGATGGCTAAACAAAGTCTGCGCTCTTTGCCGCAAATGGGCAAACAAGGTGTGT-GTGAAAATTGATTTGTG------------------------C---TTTTTGTGTGTGTGCCAAAAAAAAAAAAATAAACCAAATGCAAATGTA---ATAAAT--------------------------GTTCAAATGTTCTCTAT----------TATC----------TCTTATCAGTGAGCTATCTATCGACAAGCAGTGCCTGGCATGCTAGAGAGTCAGT---CG---------------GCTCTGTGGTGGAAATT
dp5 4_group3:7873386-7873546 + ATCCATGGCCAAACAATCCATGCGCGCACTGCCGCAGGTGGGCAAGCAAGGTGTGT-GTCTA------------------------------------ATCCTCCGCGAGTGTTAGC-------------------------------------CGAAAAT-------AATCA----------------------TCTCC-A----------TTTA----------CCAAACTAGTGAGCTACCTGTCGACGAGCAGCGCCTGGCGTGCAA------CAGT---TG------GTGGAAAC------------------
droPer2 scaffold_1:9325006-9325170 + ATCCATGGCCAAACAATCCATGCGCGCCCTGCCGCAGGTGGGCAAGCAAGGTGTGT-GTCTA------------------------------------ATCCTCCGCGAGTGTTAGC-------------------------------------CGAAAAT-------AATCA----------------------TCTCC-A----------TTTA----------CCAAACTAGTGAGCTACCTGTCGACGAGCAGCGCCTGGCGTGCAA------CAGT---TG------GTGGCAAC--------------GATT
droAna3 scaffold_12916:6681823-6682021 - ATCCATGGCCAGACAATCCGCTAAAATGTTCCCCCAGGTGGGAAAACAAGGTGTGT-GCGAC-----------------------------------------TACCCAGTGACCATTGT---------------------GAA---GTGTTATTAATTAT-------AATTA----------------------TCTAT-T--TT------TTTATTATCTATTTTATTATTAGTGAGCTACCTGTCGACCAGTGCCTCCTGGAAGGCAT------CAAC---TG------GTGGCAACGACATGGTTGTGGAGATC
droBip1 scf7180000396568:130939-131124 + ATCCATGGCCAGACAATCCGCTAAAATGTTTCCCCAGGTGGGAAAACAAGGTGTGT-GCGA-----------------------------------------TTATCCCGTGTCCATTGT---------------------GAA---GTGTTATTAATTAT-------AATTA----------------------TTCAT-A--TT------T-------------TTAAATTAGTGAGCTACCTGTCGACCAGTGCCTCCTGGAGGGCAT------CAAC---TG------GTGGCAACGACATGGTTGTGGAGATC
droKik1 scf7180000302472:1756709-1756903 - ATCCATGGCCAGGCAATCGGCGCGAGCCCTTCCCCAGATGGGCAAGCAAGGTGTGT-GTTGTTG------TGTGTG------------------------C-TTA--GAGTGTTCCCTGT---------------------GC----------GCGGTGCT-------AACGA----------------------TTTAT-T--T-------T-------CGCCCTTCCGAGCAGTGAGCTACCTGTCGACGAGCAGCGCCTGGCGGGCAG------CCTCCGTGG------GCGGCAACGACATGGTGGTGGAGATT
droFic1 scf7180000454115:851651-851845 + ATCCATTTCGA---AGTCAGCGCGAGTCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTTCGTT------CGTG------------------------TGCTTTAGCGAGTGACCACAGT---------------------GC---AGTG---ACGATCCT-------AACGA----------------------TATATAT--TCCAT------------G----ATTTACTAGTGAGCTATCTATCCACGAGTGGAGCCTGGAAGGCGG------CAGC---TG------GAAACGGCGACATGGTGGTGGAGATC
droEle1 scf7180000491046:1513930-1514142 + ATCCATGGCCAGACAAACGGCGCGAGCCCTTCCTCAGATGGGCAAGCAAGGTGTGTTGTGTGTG------TG----------CTTTAGCTTAAGCTTTAGCTTTAGCCAGTGTCCACTGT---------------------GC---AGTG---CTGATCCT-------AACGA----------------------TCTAT-T--T-------C-------CG----ATTTACCAGTAAGCTATCTCTCGACCAGTGGAGCCTGGAGGTCAG------CAGCCGCAG------GCGGTGGCGACATGGTGGTGGAGATC
droRho1 scf7180000779483:453265-453453 + ATCCATAACCCGACAAACGGTGCGAGCCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTG------------------------------------CGCTTTAGCGGTTGACCACTGT---------------------GC---AGTG---CTGATCCT-------AACGA----------------------TCTAT-T--T-------C-------CG----TTTTACCAGTGAGCTATCTCTCGACGAGCGGAGCCTGGAGGGCAG------CAGC---AG------GAGGTGGCGACATGGTGGTGGAGATC
droBia1 scf7180000301518:537324-537508 - ATCCATGGCCAGACAAGCGGCGCGAGCCCTTCCCCAGATGGGCAAACAAGGTGGGT-GTGG--------------------------------------------GCGAGTGACCACTGT---------------------GCAGAGGTG---TTGACCCT-------AACGG----------------------TCTGTAT--T-------T-------CG----ATCTCCTAGTGAGCTGTCTTTCGACGAGCGGGGCCTGGAGGACGG------CCGC---CG------GGGGCGGCGATATGGTGGTGGAGATC
droTak1 scf7180000415876:329087-329278 - ATCCATGGCTAGACAAACGGCGCGAGCCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTGTG------------------------------------------CGAAGGACCACTGT------------------AGTGCAGAAGTG---CCGATCCT-------AACGG----------------------TCTAA-T--TTTAT-----GT----------TTTTACCAGTGAGCTATCTTTCGACGAGCGGCGCCTGGAGGGCAG------CAGC---CG------GCGGTGGCGACATGGTGGTGGAGATC
droEug1 scf7180000408936:16122-16307 - ATCTATGGCCAGACAAACGGCGCGAGCCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTG--------------------------------------CTTCAGCCAGTGA-CACTGT---------------------TTAGAAGTG---CTGATCCT-------AACGA----------------------TCTAT-T--T-------T-------CA-------ATTTAGTGAGCTATCTTTCTACGAGCGGAGCCTGGAGGGCAG------CAGC---CG------GAGGTGGTGACATGGTGGTGGAGATC
dm3 chr2L:7999118-7999316 + ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAATGGGCAAACAAGGTGTGT-GTGTGTG------TGTGTGTGT--------------------------GTGTGTGCGCACTGT---------------------GCTGGAGTG---GCGATGCT-------AACGT-------------------TCTTTCAA-T----------TTTT----------CATTAACAGTGAGCTATCTATCGACGAGTGGCGCTTGGCGGGCAA------CCGC---CA------GCGGTGGCGACATGGTGGTCGAGATC
droSim2 2l:7736357-7736571 + dsi_14046 ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAATGGGCAAGCAAGGTGTGT-GTGTGTG------TGTGTGTGTGTGCTTGTG----------CGCCCTAGCGAGTGCCCACTGT---------------------GCTGGAGTG---GCGATGCT-------AACGA-------------------TCCTTTCA-T----------TTTC----------CATTAACAGTGAGCTACCTATCGACGAGCAGCGCTTGGCGGGCAT------CCGC---CG------GCGGTGGCGACATGGTGGTCGAGATC
droSec2 scaffold_3:3505828-3506034 + dse_1174 ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAATGGGCAAGCAAGGTGTGT-GTGTGTG------TGTG--------CTTGTG----------CGCCTTAGCGAGTGCCCACTGT---------------------GCTGGAGTG---GCGATGCT-------AACGA-------------------TCCTTTCA-T----------TTTC----------CATTGACAGTGAGCTACCTATCGACGAGCAGCGCTTGGCGGGCAA------CCGC---CG------GCGGTGGCGACATGGTGGTCGAGATC
droYak3 2L:10632969-10633195 + ATCCGTGAGCAGACAAACGGCGCGAGTCCTGCCCCAACTGGGCAAGCAAGGTGTGT-GTACATG------TGTGTGTGTGTGAGAGTG---------TCGCCTTAGCGAGTGCCTACTGT---------------------GCTGCAGTG---CCGATCCT-------AACGA----------------------ACTCC-T--CCCCCATTTTTA----------CATTGACAGTGAGCTACCTATCGACGAGCGGCGCTTGGAGAGCAT------CAGC---CGGCGGTGGCGGTGGCGACATGGTGGTCGAGATC
droEre2 scaffold_4929:16913886-16914066 + ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTGTG------T-----------------------------------------ACTACTGT---------------------GCTTCAGCG---CCGATCCT-------AACGA----------------------ACCCA-T----------TCTA----------CATTGACAGTGAGCTACCTATCGACGAGCGGCGCTTGGAGGGCCT------CAGC---CG------GCGGCAGCGACATGGTGGTCGAGATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTCGATGACAAGACAGACGCTGCGGGCAATGCCGCAGATGGGCAAACAAGGTGTGT-GTGTGTG------TGTGTGTG-------------------------CA--AAGTGTTATCCGA---------------------GA----------CCAAAATTAAATTGTTA-CATTTGTTATATATA---------TATAT-A--T-------T-------CT----CTTAAACAGTGAGCTATCTATCGACGAGCAGCGCCTGGCAGTCGG------CAGC---TG------GT------------------GAAATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...GATGACAAGACAGACGCT.........................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000001000000000000000000000000000001000
...........................................................GTGTG------TGTGTGTG-------------------------CA--AAGTGTTATC.........................................................................................................................................................................................................2512.002000000000000000000000000000000100000010000000000000000000000000
............ACAGACGCTGCGGGCAATGCC.............................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
....ATGACAAGACAGACGCTGC.......................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................AGCAGCGCCTGGCAGTCGG------CAGC---..................................2311.001100000000000000000000000000000000000000000000000000000000000000
..CGATGACAAGACAGACGCTGCGGG....................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCCTGGCAGTCGG------CAGC---TG------GT------------------......2111.001000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ATCTATCGACGAGCAGCGC..........................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ATCGACGAGCAGCGCCTGGCAGTCG................................................2511.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ACGAGCAGCGCCTGGCAGTC.................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..CGATGACAAGACAGACGC..........................................................................................................................................................................................................................................................................................................1811.001000000000000100000000000000000000000000000000000000000000000000
..............AGACGCTGCGGGCAATGT..............................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
..CGATGACAAGACAGACGCTGCGGGC...................................................................................................................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCCTGGCAGTCGG------CAGC---TG------GT------------------GAA...2411.001000000000000000000000000000000000010000000000000000000000000000
.....................................ATGGGCAAACAAGGTGTGT-GTG..................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................ATCGACGAGCAGCGCCTGGCAGT..................................................2311.001000000000000000000000000000000000000000000000000000000000000010
......GACAAGACAGACGCTGCGGGC...................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................GACGAGCAGCGCCTGGCAGTCGG------CAGC---TG------..........................2911.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GAGCTATCTATCGACGAG................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
GTCGATGGCAAAACAAACTCTGCGTGCAATGCCGCAGATGAGCAAACAAGGTGTGT-GTGTGTT------TG---------------------------ATTTTA--GTGTGCTTAAATT---------------------GCA---GCATATTTAATTTG------TAA-TA---------------------TTTGTCGT----------TAAT----------TTTGAATAGTGAGTTACTTATCGACGAGCAGCGCCTGCAGAGCCG------TCGT---TG------GTGGCAATGACAGCGTCGTCGAGATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................GACGAGCAGCGCCTGCAGAGC.................................................2111.001000100
.......................................................................................................................................................................................................................................................................CAGAGCCG------TCGT---TG------GTGGCAATGACAG.............2711.001010000
......GGCAAAACAAACTCTGCGTGCAATGCCGC...........................................................................................................................................................................................................................................................................................2911.001000010
..................................................................................................................................................................................................................................................................GCCTGCAGAGCCG------TCGT---TG------..........................1911.001100000
.............................................................................................................................................................................................................................................................................................G------GTGGCAATGACAGCGTC.........1811.001100000
........................................................................................................................................................................................................................................................................................T---TG------GTGGCAATGACAGCG...........1811.001001000
...........................................................................................................................................................................................................................................................GAGCAGCGCCTGCAGAGCCG------TCGT---..................................2411.001000001
................................................................................................................................................................G------TAA-TA---------------------TTTGTCGT----------TAAT----------TTTG........................................................................................2211.001010000
...............................................................................................................................................................................................................................................................AGCGCCTGCAGAGCCG------TCGC---..................................2011.001000001
droGri2
GTCGGTGACAAAACAAACGCTGCGCTCGTTGCCGCAAATGGGCAAACAAGGTGTGT-GTGTGTG------TG---------------------------------GAAAGTG-----TGT------------------------GAAATA---TAAATTCT-------AATTA----------------------TAATCGTAATCCTT-----GT----------CTTCTTCAGTGAGCTATTTATCGACAAGCAGCGCCTGGCGGTCAG------CGGT---AG------GTGGCAACGATAGTGTTGTGGAGATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................GCAGCGCCTGGCGGTCAG------CGGT---A.................................2313.00321
.......................................................................................................................................................................................................................................................................GCGGTCAG------CGGT---AG------GTGGCAACG.................2312.00202
............................................................................................................................................................................................................................................................................CAG------CGGT---AG------GTGGCAACG.................1812.00220
...................................................................................................................................................................................................................................................................CCTGGCGGTCAG------CGGT---AG------GTGGCAACG.................2711.00101
..............................................................................................................................................................................................................................................................CAGCGCCTGGCGGTCAG------CGGT---A.................................2211.00110
..........................................................................................................................................................................................................................................................CAAGCAGCGCCTGGCGGTC.................................................1911.00101
............................................................................................................................................................................................................................................................AGCAGCGCCTGGCGGTCA................................................1811.00110
...................................................................................................................................................................................................................................................................CCTGGCGGTCAG------CGGT---AG------G.........................1911.00110
.................................................................................................................................................................................................................................................ATTTATCGACAAGCAGCGCCTG.......................................................2211.00110
.............................................................................................................................................................................................................................................................GCAGCGCCTGGCGGTCAG------C........................................1911.00110
.............CAAACGCTGCGCTCGTTGCCGCA..........................................................................................................................................................................................................................................................................................2311.00110
.............................................................................................................................................................................................................................................................GCAGCGCCTGGCGGTCAG------CGGT---AG------GT........................2611.00101
........................................................................................................................................................................................................................................................................CGGTCAG------CGGT---AG------GTGGCAACG.................2211.00101
........................................................................................................................................................................................................................................................................................T---AG------GTGGCAACGATAGTG...........1811.00110
............ACAAACGCTGCGCTCGTTGCC.............................................................................................................................................................................................................................................................................................2111.00101
..............AAACGCTGCGCTCGTTGCCGC...........................................................................................................................................................................................................................................................................................2111.00110
.................................................................................................................................................................................................................................................................CGCCTGGCGGTCAG------CGGT---AG------GT........................2211.00101
..........................................................................................................................................................................................................................................................CAAGCAGCGCCTGGCGGTCAG------CG.......................................2311.00101
..................................................................................................................................................................................................................................................TTTATCGACAAGCAGCGCCTGGCG....................................................2411.00110
...................................................................................................................................................................................................................................................................CCTGGCGGTCAG------CGGT---AG------GTGGC.....................2311.00101
...............AACGCTGCGCTCGTTGCC.............................................................................................................................................................................................................................................................................................1811.00110
..................................................................................................................................................................................................................................................................GCCTGGCGGTCAG------CGGT---AG------GTGG......................2311.00110
..................................................................................................................................................................................................................................................................GCCTGGCGGTCAG------CGGT---AG------GTGGCA....................2511.00110
.................................................................................................................................................................................................................................................ATTTATCGACAAGCAGCG...........................................................1811.00110
........................................................................................................................................................................................................................................................GACAAGCAGCGCCTGGCGGTCA................................................2211.00110
.........................................................................................................................................................................................................................................................ACAAGCAGCGCCTGGCGGTC.................................................2011.00101
...............AACGCTGCGCTCGTTGCCGCAAATGGGCA..................................................................................................................................................................................................................................................................................2911.00110
............................................................................................................................................................................................................................................................AGCAGCGCCTGGCGGTCAG------CGGT---A.................................2411.00101
.....................................................................................................................................................................................................................................................ATCGACAAGCAGCGCCTGGCGGTCA................................................2511.00110
...................................................................................................................................................................................................................................................................CCTGGCGGTCAG------CGGT---AG------GTGG......................2211.00101
..............................................................................................................................................................................................................................................................CAGCGCCTGGCGGTCAG------CG.......................................1911.00110
.................CGCTGCGCTCGTTGCCGC...........................................................................................................................................................................................................................................................................................1811.00110
droWil2
GTCGATGGCTAAACAAAGTCTGCGCTCTTTGCCGCAAATGGGCAAACAAGGTGTGT-GTGAAAATTGATTTGTG------------------------C---TTTTTGTGTGTGTGCCAAAAAAAAAAAAATAAACCAAATGCAAATGTA---ATAAAT--------------------------GTTCAAATGTTCTCTAT----------TATC----------TCTTATCAGTGAGCTATCTATCGACAAGCAGTGCCTGGCATGCTAGAGAGTCAGT---CG---------------GCTCTGTGGTGGAAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................GTCAGT---CG---------------GCTCTGTGGTGGAA...2212.00200200
..........................................................................................................................................................................................................................................................................TGCTAGAGAGTCAGT---CG---------------GCTCTGTGG........2611.00110000
.............................................................................................................................................................................................................................................................................TAGAGAGTCAGT---CG---------------GCTC.............1811.00110000
...............AAGTCTGCGCTCTTTGCC.............................................................................................................................................................................................................................................................................................1811.00110000
................................CGCAAATGGGCAAACAAG............................................................................................................................................................................................................................................................................1811.00100001
.TCGATGGCTAAACAAAGTCTGC.......................................................................................................................................................................................................................................................................................................2211.00110000
.......................................................................................................................................................................................................................................................................GCATGCTAGAGAGTCAGT---CG---------------GC...............2211.00110000
....................................AATGGGCAAACAAGGTGTGT-G....................................................................................................................................................................................................................................................................2111.00100100
..................................................................................................................................................................................................................................................TCTATCGACAAGCAGTGCCTG.......................................................2111.00101000
................................................................................................................................................................................................................................................TATCTATCGACAAGCAGTGCC.........................................................2111.00100010
.......................................GGGCAAACAAGGTGTGT-G....................................................................................................................................................................................................................................................................1811.00100001
.....................................................................................................................................................................................................................................................................TGGCATGCTAGAGAGTCAGT---CG---------------GCTCTG...........2811.00100001
.................................................................................................................................................................................................................................................ATCTATCGACAAGCAGTGCC.........................................................2011.00100100
..................................................................................................................................................................................................................................................................................AGTCAGT---CG---------------GCTCTGTGGT.......1911.00100100
............................................................................................................................................................................................................................................................................................CG---------------GCTCTGTGGTGGAAAT.1811.00100010
....................TGCGCTCTTTGCCGCAAATGGGCAAAC...............................................................................................................................................................................................................................................................................2711.00100100
................................CGCAAATGGGCAAACAAGGTGTGT-G....................................................................................................................................................................................................................................................................2511.00100001
...................................................................................................................................................................................................................................................................................GTCAGT---CG---------------GCTCTGTGGT.......1811.00100001
.....................................................................................................................................................................................................................................................................TGGCATGCTAGAGAGTCAGT---CG---------------GCTC.............2611.00100100
.................................................................................................................................................................................................................................................ATCTATCGACAAGCAGTGCCT........................................................2111.00100001
...................................................................................................................................................................................................................................................................................GTCAGT---CG---------------GCTCTGTGGTGGA....2111.00100100
GTCGATGGCTAAACAAAGTCT.........................................................................................................................................................................................................................................................................................................2111.00110000
.................................................................................................................................................................................................................................................ATCTATCGACAAGCAGTGCCTGGCA....................................................2511.00100001
dp5
ATCCATGGCCAAACAATCCATGCGCGCACTGCCGCAGGTGGGCAAGCAAGGTGTGT-GTCTA------------------------------------ATCCTCCGCGAGTGTTAGC-------------------------------------CGAAAAT-------AATCA----------------------TCTCC-A----------TTTA----------CCAAACTAGTGAGCTACCTGTCGACGAGCAGCGCCTGGCGTGCAA------CAGT---TG------GTGGAAAC------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................TGAGCTACCTGTCGACGAGC...............................................................2012.0020100010000
......................................................................................................................................................................................................................................ACTAGTGAGCTACCTGTC......................................................................1811.0010100000000
...............................................AAGGTGTGT-GTCTA------------------------------------ATCCT.......................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................TTTA----------CCAAACTAGTGAGCTAC...........................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................GTCGACGAGCAGCGCCTGGCGTGC.................................................2411.0010100000000
......................CGCGCACTGCCGCAGGTGGGCA..................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................ATCCTCCGCGAGTGTTAGC-------------------------------------CG..................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................CCTGTCGACGAGCAGCGCCTGGCGTGC.................................................2711.0010010000000
............ACAATCCATGCGCGCACTGCC.............................................................................................................................................................................................................................................................................................2111.0010100000000
.................CCATGCGCGCACTGCCGCAGGTGGGC...................................................................................................................................................................................................................................................................................2611.0010001000000
...................................................................................................................................................................................................................................................CTGTCGACGAGCAGCGCC.........................................................1811.0010100000000
.............................................................A------------------------------------ATCCTCCGCGAGTGTTAGC-------------------------------------CGA.................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................ACGAGCAGCGCCTGGCGTGCA................................................2111.0010100000000
........................................GGCAAGCAAGGTGTGT-GTC..................................................................................................................................................................................................................................................................1911.0010000001000
droPer2
ATCCATGGCCAAACAATCCATGCGCGCCCTGCCGCAGGTGGGCAAGCAAGGTGTGT-GTCTA------------------------------------ATCCTCCGCGAGTGTTAGC-------------------------------------CGAAAAT-------AATCA----------------------TCTCC-A----------TTTA----------CCAAACTAGTGAGCTACCTGTCGACGAGCAGCGCCTGGCGTGCAA------CAGT---TG------GTGGCAAC--------------GATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................TGAGCTACCTGTCGACGAGC...............................................................2011.001000001
................TCCATGCGCGCCCTGCCGCAGGT.......................................................................................................................................................................................................................................................................................2311.001001000
.................CCATGCGCGCCCTGCCGCAGGTGGGC...................................................................................................................................................................................................................................................................................2611.001100000
.......GCCAAACAATCCATGCGC.....................................................................................................................................................................................................................................................................................................1811.001000010
droAna3
ATCCATGGCCAGACAATCCGCTAAAATGTTCCCCCAGGTGGGAAAACAAGGTGTGT-GCGAC-----------------------------------------TACCCAGTGACCATTGT---------------------GAA---GTGTTATTAATTAT-------AATTA----------------------TCTAT-T--TT------TTTATTATCTATTTTATTATTAGTGAGCTACCTGTCGACCAGTGCCTCCTGGAAGGCAT------CAAC---TG------GTGGCAACGACATGGTTGTGGAGATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................GCGAC-----------------------------------------TACCCAGTGACCATTG.......................................................................................................................................................................................................2111.001001000
..........................................................................................................................................................................................................................................GTGAGCTACCTGTCGACC..................................................................1811.001000100
..................................................................................................................................................................................................................................................................TCCTGGAAGGCAT------CAAC---TG------GTGGCAA...................2611.001100000
.........................................................................................................................................................................................................................................AGTGAGCTACCTGTCGACC..................................................................1911.001010000
.............................................................C-----------------------------------------TACCCAGTGACCATTGT---------------------GAA---G..........................................................................................................................................................................2211.001000001
....................................................................................................................................................................................................................................................................................................GTGGCAACGACATGGTTGTGGAGATC2611.001010000
...............................................................................................................................................................................................................................................................GCCTCCTGGAAGGCAT------CAAC---TG------GTGG......................2611.001000010
.........................................................................................................................................................................................................................................AGTGAGCTACCTGTCGACCA.................................................................2011.001000001
..........................................................................................................................................................................................................................................................................GGCAT------CAAC---TG------GTGGCAACG.................2011.001100000
...................................................TGTGT-GCGAC-----------------------------------------TACCCAGTGAC............................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................CTACCTGTCGACCAGTGCCT...........................................................2011.001000001
........................................................................................................................................................................................................................................................GACCAGTGCCTCCTGGAAGGC.................................................2111.001010000
..................................................................................................................................................................................................................................................CCTGTCGACCAGTGCCTCCTGGAAG...................................................2511.001100000
....................................................................................................................................................................................................................................................TGTCGACCAGTGCCTCCTGGA.....................................................2111.001100000
...........................GTTCCCCCAGGTGGGAAAACAAGGT..........................................................................................................................................................................................................................................................................2511.001000001
droBip1
ATCCATGGCCAGACAATCCGCTAAAATGTTTCCCCAGGTGGGAAAACAAGGTGTGT-GCGA-----------------------------------------TTATCCCGTGTCCATTGT---------------------GAA---GTGTTATTAATTAT-------AATTA----------------------TTCAT-A--TT------T-------------TTAAATTAGTGAGCTACCTGTCGACCAGTGCCTCCTGGAGGGCAT------CAAC---TG------GTGGCAACGACATGGTTGTGGAGATCSizeHit CountTotal NormTotal
No Reads
droKik1
ATCCATGGCCAGGCAATCGGCGCGAGCCCTTCCCCAGATGGGCAAGCAAGGTGTGT-GTTGTTG------TGTGTG------------------------C-TTA--GAGTGTTCCCTGT---------------------GC----------GCGGTGCT-------AACGA----------------------TTTAT-T--T-------T-------CGCCCTTCCGAGCAGTGAGCTACCTGTCGACGAGCAGCGCCTGGCGGGCAG------CCTCCGTGG------GCGGCAACGACATGGTGGTGGAGATTSizeHit CountTotal NormTotal
No Reads
droFic1
ATCCATTTCGA---AGTCAGCGCGAGTCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTTCGTT------CGTG------------------------TGCTTTAGCGAGTGACCACAGT---------------------GC---AGTG---ACGATCCT-------AACGA----------------------TATATAT--TCCAT------------G----ATTTACTAGTGAGCTATCTATCCACGAGTGGAGCCTGGAAGGCGG------CAGC---TG------GAAACGGCGACATGGTGGTGGAGATCSizeHit CountTotal NormTotal
No Reads
droEle1
ATCCATGGCCAGACAAACGGCGCGAGCCCTTCCTCAGATGGGCAAGCAAGGTGTGTTGTGTGTG------TG----------CTTTAGCTTAAGCTTTAGCTTTAGCCAGTGTCCACTGT---------------------GC---AGTG---CTGATCCT-------AACGA----------------------TCTAT-T--T-------C-------CG----ATTTACCAGTAAGCTATCTCTCGACCAGTGGAGCCTGGAGGTCAG------CAGCCGCAG------GCGGTGGCGACATGGTGGTGGAGATCSizeHit CountTotal NormTotal
No Reads
droRho1
ATCCATAACCCGACAAACGGTGCGAGCCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTG------------------------------------CGCTTTAGCGGTTGACCACTGT---------------------GC---AGTG---CTGATCCT-------AACGA----------------------TCTAT-T--T-------C-------CG----TTTTACCAGTGAGCTATCTCTCGACGAGCGGAGCCTGGAGGGCAG------CAGC---AG------GAGGTGGCGACATGGTGGTGGAGATCSizeHit CountTotal NormTotal
No Reads
droBia1
ATCCATGGCCAGACAAGCGGCGCGAGCCCTTCCCCAGATGGGCAAACAAGGTGGGT-GTGG--------------------------------------------GCGAGTGACCACTGT---------------------GCAGAGGTG---TTGACCCT-------AACGG----------------------TCTGTAT--T-------T-------CG----ATCTCCTAGTGAGCTGTCTTTCGACGAGCGGGGCCTGGAGGACGG------CCGC---CG------GGGGCGGCGATATGGTGGTGGAGATCSizeHit CountTotal NormTotal
No Reads
droTak1
ATCCATGGCTAGACAAACGGCGCGAGCCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTGTG------------------------------------------CGAAGGACCACTGT------------------AGTGCAGAAGTG---CCGATCCT-------AACGG----------------------TCTAA-T--TTTAT-----GT----------TTTTACCAGTGAGCTATCTTTCGACGAGCGGCGCCTGGAGGGCAG------CAGC---CG------GCGGTGGCGACATGGTGGTGGAGATCSizeHit CountTotal NormTotal
No Reads
droEug1
ATCTATGGCCAGACAAACGGCGCGAGCCCTTCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTG--------------------------------------CTTCAGCCAGTGA-CACTGT---------------------TTAGAAGTG---CTGATCCT-------AACGA----------------------TCTAT-T--T-------T-------CA-------ATTTAGTGAGCTATCTTTCTACGAGCGGAGCCTGGAGGGCAG------CAGC---CG------GAGGTGGTGACATGGTGGTGGAGATCSizeHit CountTotal NormTotal
No Reads
dm3
ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAATGGGCAAACAAGGTGTGT-GTGTGTG------TGTGTGTGT--------------------------GTGTGTGCGCACTGT---------------------GCTGGAGTG---GCGATGCT-------AACGT-------------------TCTTTCAA-T----------TTTT----------CATTAACAGTGAGCTATCTATCGACGAGTGGCGCTTGGCGGGCAA------CCGC---CA------GCGGTGGCGACATGGTGGTCGAGATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................GCGGTGGCGACATGGTGGTCGAGAT.25114.001400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013
....................CGCGAGTCCTGCCCCAAA........................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCAAACAAGGTGTGT-GTG..................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................TATCTATCGACGAGTGGCGCT.........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GTGAGCTATCTATCGACGT.................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GGGCAAACAAGGTGTGT-G....................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.....................................ATGGGCAAACAAGGTGTG.......................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGTGAGCTATCTATCGACGAG................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GGCGCTTGGCGGGCAA------CCGC---C.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GACAAACGGCGCGAGTCCTGCC.............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ACAAACGGCGCGAGTCCTGCC.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................GT---------------------GCTGGAGTG---GCGATGCT-------AA....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................GTGAGCTATCTATCGACGAGC...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GGCGACATGGTGGTCGAGA..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATCCGTGACCAGACAAACGGCGCGAG....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ACTGT---------------------GCTGGAGTG---GCGA.................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GTGAGCTATCTATCGACGAGT...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GCGGTGGCGACATGGTGGTCGAGA..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AACAGTGAGCTATCTATCGA....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........AGACAAACGGCGCGAGTC..................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CTATCGACGAGTGGCGCTTGGCG....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GCGCTTGGCGGGCAA------CCGC---CA------GC........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CTATCTATCGACGAGTGGCGCTT........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GCGACATGGTGGTCGAGATC2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAATGGGCAAACAAGGTG.........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAAATGGGCAAACAAGGTG.........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................................................................................................................................................................................GGTGGCGACATGGTGGTCGAGAT.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ATCCGTGACCAGACAAACGGCG........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCGCGAGTCCTGCCCCAAA........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTGACCAGACAAACGGCGCGAGTC..................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TGAGCTATCTATCGACGAGTG..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TATCGACGAGTGGCGCTTGGCGGG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GCACTGT---------------------GCTGGAGTG---GCGATG...............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................AATGGGCAAACAAGGTGTGT-G....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCAGACAAACGGCGCGAGT...................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTGACCAGACAAACGGCGCGAG....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCAGACAAACGGCGCGAGTCCTGCC.............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GGCGCGAGTCCTGCCCCT..........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................T----------CATTAACAGTGAGCTATC..........................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CGGTGGCGACATGGTGGTCGA....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................ATTAACAGTGAGCTATCTATC......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................AGTGGCGCTTGGCGGGCAA------CC.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CGGTGGCGACATGGTGGTCGAG...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGGCGCGAGTCCTGCCCCAAATG......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GACCAGACAAACGGCGCGAGTCCTGCCC............................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCAAACAAGGTGTGT-GTGTG................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCAGACAAACGGCGCGAGTCCT................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................GGCGCGAGTCCTGCCCCAAATGGG....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAAATGGGCAAACAAGGTGTGT-G....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......GACCAGACAAACGGCGCG......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................CA------GCGGTGGCGACATGGTGG........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....GTGACCAGACAAACGGCGCGAGTCCTT...............................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................GCGAGTCCTGCCCCAAAT.......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAAATGGGCAAACAAGGT..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........GACAAACGGCGCGAGTCC.................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
................................CCCAAATGGGCAAACAAGGTGTGT-GTG..................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TCTATCGACGAGTGGCGCTTGGCGGGC.................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......ACCAGACAAACGGCGCGA.....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................ATTAACAGTGAGCTATCTA........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................GTGTGTG------TGTGTGTGT--------------------------GTGTGTGCG............................................................................................................................................................................................................25200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000920001000000
................................................AGGTGTGT-GTGTGTG------TGTGTGTGT--------------------------G....................................................................................................................................................................................................................25140.2940000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000010000000000100000000000
.............................................ACAAGGTGTGT-GTGTGTG------........................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................AAGGTGTGT-GTGTGTG------TGTGTGTGT--------------------------G....................................................................................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droSim2
ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAATGGGCAAGCAAGGTGTGT-GTGTGTG------TGTGTGTGTGTGCTTGTG----------CGCCCTAGCGAGTGCCCACTGT---------------------GCTGGAGTG---GCGATGCT-------AACGA-------------------TCCTTTCA-T----------TTTC----------CATTAACAGTGAGCTACCTATCGACGAGCAGCGCTTGGCGGGCAT------CCGC---CG------GCGGTGGCGACATGGTGGTCGAGATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................GCAGCGCTTGGCGGGCA................................................1711.00100000010000000000
..................................................................................................................................................................................................CTTTCA-T----------TTTC----------CATTAACAGTG.................................................................................2211.00100001000000000000
...................................................................................................................ACTGT---------------------GCTGGAGTG---GCGATG...............................................................................................................................................................2011.00100000000001000000
...................................................................................TTGTG----------CGCCCTAGCGAGTGCCC...........................................................................................................................................................................................................2211.00100000000001000000
..................................................................................................................................................................................................................................................CCTATCGACGAGCAGCGCTTGGC.....................................................2311.00110000000000000000
............................................................................................................................................................................................................................................................AGCAGCGCTTGGCGGGCAT------CC.......................................2111.00100000100000000000
...............................................................................................................................................................................................................................................................AGCGCTTGGCGGGCAT------CCG......................................1911.00100000100000000000
.............................................................GTG------TGTGTGTGTGTGCTT.........................................................................................................................................................................................................................................18200.05100000000001000000
droSec2
ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAATGGGCAAGCAAGGTGTGT-GTGTGTG------TGTG--------CTTGTG----------CGCCTTAGCGAGTGCCCACTGT---------------------GCTGGAGTG---GCGATGCT-------AACGA-------------------TCCTTTCA-T----------TTTC----------CATTGACAGTGAGCTACCTATCGACGAGCAGCGCTTGGCGGGCAA------CCGC---CG------GCGGTGGCGACATGGTGGTCGAGATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................GCCCACTGT---------------------GCTGGAGTG---GCGATG...............................................................................................................................................................2412.0020002
............................................AGCAAGGTGTGT-GTGTGTG------........................................................................................................................................................................................................................................................1911.0010010
..............................GCCCCAAATGGGCAAGCAAGGTGTG.......................................................................................................................................................................................................................................................................2511.0010100
..............................................................................................................................................................................................................................................................CAGCGCTTGGCGGGCAA------CCGC---CG------G.........................2411.0010010
............................................................................................................................................................................................................................................................AGCAGCGCTTGGCGGGCAA------CCGC---C.................................2411.0010001
..............................................................................................................................................................................................................................................................CAGCGCTTGGCGGGCAA------CCGC---C.................................2211.0010010
...........................................AAGCAAGGTGTGT-GTGTG................................................................................................................................................................................................................................................................1811.0010001
droYak3
ATCCGTGAGCAGACAAACGGCGCGAGTCCTGCCCCAACTGGGCAAGCAAGGTGTGT-GTACATG------TGTGTGTGTGTGAGAGTG---------TCGCCTTAGCGAGTGCCTACTGT---------------------GCTGCAGTG---CCGATCCT-------AACGA----------------------ACTCC-T--CCCCCATTTTTA----------CATTGACAGTGAGCTACCTATCGACGAGCGGCGCTTGGAGAGCAT------CAGC---CGGCGGTGGCGGTGGCGACATGGTGGTCGAGATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................AGCGGCGCTTGGAGAGCAT------CAGC---C.................................2411.00100000010000
.TCCGTGAGCAGACAAACGGC.........................................................................................................................................................................................................................................................................................................2011.00100001000000
...........................................................................................................................................................................................................................................................................GCAT------CAGC---CGGCGGTGGCGGT.....................2111.00101000000000
....................CGCGAGTCCTGCCCCAACTGGGC...................................................................................................................................................................................................................................................................................2311.00100100000000
...............................................................................................................GCCTACTGT---------------------GCTGCAGTG---CCG..................................................................................................................................................................2111.00101000000000
.................................CCAACTGGGCAAGCAAGT...........................................................................................................................................................................................................................................................................1830.33110000000000
droEre2
ATCCGTGACCAGACAAACGGCGCGAGTCCTGCCCCAAGTGGGCAAGCAAGGTGTGT-GTGTGTG------T-----------------------------------------ACTACTGT---------------------GCTTCAGCG---CCGATCCT-------AACGA----------------------ACCCA-T----------TCTA----------CATTGACAGTGAGCTACCTATCGACGAGCGGCGCTTGGAGGGCCT------CAGC---CG------GCGGCAGCGACATGGTGGTCGAGATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................AGC---CG------GCGGCAGCGACATGGT..........2111.0010000010
...................................................TGTGT-GTGTGTG------T-----------------------------------------ACTACTGT---------------------GCC..............................................................................................................................................................................2411.0010100000
............................................................................................................................................................................................................................................GAGCTACCTATCGACGAGC...............................................................1911.0010000010
.............................................................................................................................................................................................................................................AGCTACCTATCGACGAGCGGC............................................................2111.0010000010
...............................................................................................................................................................................................................................................CTACCTATCGACGAGCGGCGCTTGGA.....................................................2611.0010100000
.............................................GCAAGGTGTGT-GTGTGTG------........................................................................................................................................................................................................................................................1830.3310000010

Generated: 05/17/2015 at 04:04 AM