ID:

dvi_10749

 Coordinate:

scaffold_12963:7317816-7317966 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.2 -16.1 -16.0

Flybase annnotation

exon [dvir_GLEANR_1069:3]; CDS [Dvir\GJ10789-cds]; intron [Dvir\GJ10789-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAGATTAGATAATAGACAGATGGCTCCTAATCTTTTATTATTATCTATTAATCAGAATTGTTGTTGAACACGTTTCGCCAAATTTCAAGTATTTTCTGGAATGTCTCATGACTAAACACCTGCGCTGCGATTGTAAATCTTTAACAGCTCATTAACTCAACTTGTTAATATTTTTTTTTTTTTGTATTTTTGCTTTTCAGTATATGGGCGTCTGGTATGAGTATGCAAAGTATCCATTTGCCTTTGAAAT
**************************************************..........((((((((((((((..(((...(((((.((......)))))))(((....))).........)))..)))..)))......))))))))..((((((.......))))))...............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V047
embryo
 M027
male body		 M061
embryo
 SRR060670
9_testes_total
 SRR060664
9_males_carcasses_total
 V053
head
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060673
9_ovaries_total
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGT............................ 21 0 1 28.00 28 25 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAGT............................ 23 0 1 17.00 17 12 2 0 1 0 0 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATATGGGCGTCTGGTATGA.............................. 21 0 1 12.00 12 10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGA.............................. 19 0 1 12.00 12 11 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAGTATGC........................ 27 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAGT................... 22 0 1 6.00 6 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAA..................... 20 0 1 5.00 5 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATCCATTTGCCTTTGAAAT 19 0 1 5.00 5 0 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATGCGTATATGGGCGTCTGGTATGA.............................. 25 3 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGGCGTCTGGTATGAGT............................ 19 0 1 4.00 4 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGC........................ 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTAT.......................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTGGTATGAGTATGCAAAGT................... 20 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAG............................. 22 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GAGTATGCAAAGTATCCATT............ 20 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGTATATGGGCGTCTGGTATGAGT............................ 24 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGGCGTCTGGTATGAG............................. 18 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGCA....................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATGCGTATATGGGCGTCTGGTA................................. 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGG.............................. 19 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGC........................ 23 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTATGCAAAGTATCCATTTGC......... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGTATCCATTTGCCTTTGAAAT 22 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTATGCAAAGTATCCATTT........... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATGCGTATATGGGCGTCTGGTATGAGT............................ 27 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTGGTATGAGTATGCA....................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAG.................... 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTGGTATGAGTATGCAA...................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGCAAAGTATCCATTTGC......... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTATGCAAAGTATCCATTTGCCT....... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTATGCAAAGTATCCATTTG.......... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GCGTATATGGGCGTCTGGTATGAGTATGC........................ 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CATTGACTGAACTTGTTACTAT............................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................GTATGAGTATGCAAAGTATCCA.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATG......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GAGTATGCAAAGTATCCATTTGC......... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGCAAAGT................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GTTTCGCCAAATTTCAAGT................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CTATTAATCAGAATTGTTGTT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATCAGTATGCTAAGTATCCATT............ 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGTTATGAGT............................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TATGGGCGTCTGGTATGAGTATGCA....................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAGTATG......................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAAGTATCCATTTGCCTTTG.... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTTG.......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGTATATGGGCGTCTGGTATGAGTATGC........................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGTCTGGTATGAGTATGCAAAGT................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCCGGTATGAGT............................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGCAAA..................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCAT............. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGAG............................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGTATATGGGCGTCTGGTATGA.............................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGCA....................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGTATGGGTATGCAAAGT................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ATTTCAAGTATTTTCTGGA...................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTTGC......... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATATGCGCGTATGGTATGAGT............................ 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAGTATCC............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GCGTATATGGGCGTCTGGTATGA.............................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACGAGTATGCAAAGTATCCATTTG.......... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGGCGTCTGGTATGAGTAT.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGCAA...................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTT........... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGGGCCTCTGGTATGAGT............................ 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................GTATATGGGCGTCTGGTAT................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGTCTGGTATGAGTATGCAAAGTAT................. 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATATGGGCGTCTGGTATTA.............................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................TCAGAATTGTTGTTGAACACGT................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTTGCC........ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................GTATGCAAAGTATCCATTTGCC........ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAGTATCCA.............. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATATGGGCGACTGGTATGA.............................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCAAAGTATCCATTTGCCTTTGAA.. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TATGGGCGTCTGGTATGAGTATGCAAAGT................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GAGTATGCAAAGTATCCATTT........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GCGTATATGGGCGTCTGGT.................................. 19 2 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATGCGTATATGGGCGTCTGGT.................................. 21 3 3 0.67 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................AAGTATTTTCTGGAATGTCTCATGAC.......................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TTGTTGAGCACGTTGCTCCA.......................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................ATATGGCCGTATGGTACGA.............................. 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................TTTCGGTATATGGGCGA....................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................GTTGAAGACGTTTCCCAAAA........................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TATCTAATCTATTATCTGTCTACCGAGGATTAGAAAATAATAATAGATAATTAGTCTTAACAACAACTTGTGCAAAGCGGTTTAAAGTTCATAAAAGACCTTACAGAGTACTGATTTGTGGACGCGACGCTAACATTTAGAAATTGTCGAGTAATTGAGTTGAACAATTATAAAAAAAAAAAAACATAAAAACGAAAAGTCATATACCCGCAGACCATACTCATACGTTTCATAGGTAAACGGAAACTTTA
**************************************************..........((((((((((((((..(((...(((((.((......)))))))(((....))).........)))..)))..)))......))))))))..((((((.......))))))...............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 V047
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
..............TCAGTCTACCGAGGAGTAG.......................................................................................................................................................................................................................... 19 2 2 4.00 8 3 2 0 0 1 1 1 0 0 0 0 0
..............TCAGTCTACCGAGGAGTA........................................................................................................................................................................................................................... 18 2 4 1.25 5 0 0 2 0 0 0 0 1 1 1 0 0
.....................................................................................................................................CATTTAGCAATTGCCGAGTA.................................................................................................. 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............TCAGTCTACCGAGGAGTAGTA........................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAGATAAAAACGTAAAGTG.................................................. 27 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................GATTTGGGGACTCGATGC......................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:7317766-7318016 - dvi_10749 ATA--GATTAGATA-ATA-----GACAGATG----GCTCCTAATCTTTTATTATTATCTATTAATCAGAATTGTTGTTGAACACGTTTCGCCAAATT---TCAAGTA--TTTTCTGGAATGTCTCATGACTAAACACCTGCGCT-GCGATTGTAAATCTTTAACAGCTCATTAACTCAACTTGTTAATATTTTTTTTTTTTTGTAT-------------------------------------------------TTTTG--CT--TTTCAGTATATGGGCGTCTGGTATGAGTATGCAAAGTATCCATTTGCCTTTGAAAT
droMoj3 scaffold_6500:3573763-3573985 + ATA--GATTAGATAGATAGTTTTGATAAATG---AGTTTTTAATCCATTAT------------AACAG------CGTTGAGCCTGTTGACCTGAATCTATTCAATCTTTTTTTCTGGAACAATTCATGATATAATA---ACGCTTCAGATAGTAA--CAAAAACAGCTGATTCATTTGAC------------------------TTGT------------------------------------------TTTC-AATTG--TC--TTTCAGTACATGGGCGTCTGGTATGAGTATGCGAAGTATCCGTTTCTCTTTGAGAT
droGri2 scaffold_15252:10449204-10449280 - TTTTA--------------------------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-----------------------------------------------TTGC-AATACTTTACAGTATATGGGCATCTGGTATGAGTACTCAAGGTATCCATTTGCCTTTGAAAT
droWil2 scf2_1100000004521:3017797-3017867 - TTTCT--------------------------AA-----------------------------------AATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG--TTTCAGTATTTGGGAATTTGGTACGAGTATTCGAAATATCCATTTGTCTTTGAAAT
dp5 Unknown_singleton_507:943-995 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACTTGGGGATCTGGTACGAGCACAGCAAGTATCCATTTGCATTCGAAAT
droPer2 scaffold_8:1070690-1070742 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACTTGGGGATCTGGTACGAGCACAGCAAGTATCCGTTTGCATTCGAAAT
droAna3 scaffold_12916:4823023-4823078 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGTACTTGGGAGTCTGGTACGAATACTCCAAGTATCCCTTCGCCTTTGAGAT
droBip1 scf7180000395152:60043-60098 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTACATGGGCGTCTGGTACGAGTACTCCAAGTACCCCTTCGCCTTTGAGAT
droKik1 scf7180000302405:621298-621368 - TTCAT--------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT-AACC--CTCTAGTATATGGGCATCTGGTACGAGTACTCCAAATATCCATTTGCCTTTGAGAT
droFic1 scf7180000452071:53166-53221 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTACATGGGCCTCTGGTATGAGTACGCCAAGTATCCATTTGTCTTTGAGTT
droEle1 scf7180000491273:2084466-2084552 + AATAT--------------------------TTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT--------------------TTAATT---------TATTATATTC-AA----TATTAGTACATGGGTGTCTGGTATGAGTACTCCAAATATCCATTTGCCTTTGAGAT
droRho1 scf7180000772585:3921-4007 - TTAAT--------------------------ATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------TTATTTATTAT----TTTT-AACT---GT--TGTTAGTACCTGGGTGTCTGGTACGAGTACTCCAAATATCCATTCGCCTTTGAGAT
droBia1 scf7180000302188:478890-478959 + TTTAT--------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTT--TC--CTTCAGTACATGGGTGTCTGGTACGAGTACTCAGCTTACCCATTTGCCTTTGAGAT
droTak1 scf7180000413142:25404-25575 - ACTTC--------------------------AA-----------------------------------GCTTA-----CTATTTGTTGGTTTG--------------------TTTGCATGTTATATG----AACATCTGC-----------------------------TTCAACAGTC--GTAA-----------------AATTGTTACATTTTTTTAAAGAGGAAATTATTTAATT-------AATAATT-AATTT--TT--TTGTAGTACATGGGCGTCTGGTACGAGTACGCCGCGTATCCATTTGCCTTTGAGAT
droEug1 scf7180000407252:466841-466925 + ATTAC--------------------------ATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------CTAATT-------AATAATT--ATCT--GT--CTTTAGTACATGGGTGTCTGGTATGAGTACTCCAAGTACCCCTTTGCCTTTGAAGT
dm3 chr2L:1360877-1360975 - TA-----------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCTTACAT--------------------TGTATTTATTACTATTATTATTTCG-AATA--CTTCAGTATATGGGCGTCTGGTACGAGTACGCAGCCTATCCATTTGCTTTCGAGAT
droSim2 2l:1298862-1298955 - TTGTT--------------------------AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------TGTATTTATTATTATTATTATTCCA-AATA--CTTCAGTATATGGGTGTGTGGTACGAGTACGCGGCCTATCCATTTGCTTTCGAGAT
droSec2 scaffold_14:1308968-1309050 - TTATT--------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTATTATTCCG-AATA--CTTCAGTATATGGGCGTGTGGTACGAGTACGCGGCGTATCCATTTGTTTTCGAGAT
droYak3 2L:1335990-1336088 - ACGTA--------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTAACAT--------------------TGTATTTAT---TGTTATTTTTCTG-AATA--CTTCAGTATATGGGCGTTTGGTATGAGTACGCCGCCTATCCATTTGCCTTCGAGAT
droEre2 scaffold_4929:1404934-1405008 - ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTTTTGTG-AATA--CTCCAGTACATGGGCGTCTGGTACGAGTACGCGGCCTATCCATTTGCATTCGAGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATA--GATTAGATA-ATA-----GACAGATG----GCTCCTAATCTTTTATTATTATCTATTAATCAGAATTGTTGTTGAACACGTTTCGCCAAATT---TCAAGTA--TTTTCTGGAATGTCTCATGACTAAACACCTGCGCT-GCGATTGTAAATCTTTAACAGCTCATTAACTCAACTTGTTAATATTTTTTTTTTTTTGTAT-------------------------------------------------TTTTG--CT--TTTCAGTATATGGGCGTCTGGTATGAGTATGCAAAGTATCCATTTGCCTTTGAAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGT............................21128.00280020000000000000000000000000000000000000000000000000000000010250
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAGT............................23117.00171020000000000000100000000000000000000000000000000000000000010120
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTATGA..............................21112.00120010000000000000010000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGA..............................19112.00120001000000000000000000000000000000000000000000000000000000000110
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAGTATGC........................2719.009000000000000000000000000000000000000000000000000000000000000090
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAGT...................2216.006002000000000000000000000000000000000000000000000000000000000040
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAA.....................2015.005003000000000000100000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................ATCCATTTGCCTTTGAAAT1915.005003000000000000002000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGT............................1914.004000000000000000000000000000000000000000000000000000000000001030
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGC........................2513.003000000000000000000000000000000000000000000000000000000000000030
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTAT..........................2113.003000000000000000000000000000000000000000000000000000000000000030
...........................................................................................................................................................................................................................................................................................CTGGTATGAGTATGCAAAGT...................2013.003002000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAG.............................2213.003000000000000000100000000000000000000000000000000000000000000020
..................................................................................................................................................................................................................................................................................................GAGTATGCAAAGTATCCATT............2012.002001000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAG.............................1812.002000000000000000000000000000000000000000000000000000000000001010
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGCA.......................2612.002000000000000000000000000000000000000000000000000000000000000020
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGG..............................1912.002200000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGC........................2312.002000100000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................GTATGCAAAGTATCCATTTGC.........2112.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AGTATCCATTTGCCTTTGAAAT2212.002001000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTATGCAAAGTATCCATTT...........1912.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCA.......................1812.002002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAG....................2112.002000000000000000110000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCAA......................1912.002000000000000000000002000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATGCAAAGTATCCATTTGC.........1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTATGCAAAGTATCCATTTGCCT.......2311.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTATGCAAAGTATCCATTTG..........2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GTATGAGTATGCAAAGTATCCA..............2211.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATG.........................2411.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................GAGTATGCAAAGTATCCATTTGC.........2311.001000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGCAAAGT...................2811.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................GTTTCGCCAAATT---TCAAGT........................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.........................................................CTATTAATCAGAATTGTTGTT....................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................TATGGGCGTCTGGTATGAGTATGCA.......................2511.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTATGAGTATG.........................2611.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AAAGTATCCATTTGCCTTTG....2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTTG..........2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CGTCTGGTATGAGTATGCAAAGT...................2311.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGCAAA.....................2811.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCAT.............2111.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGAG.............................2011.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGCA.......................2411.001000000000000000010000000000000000000000000000000000000000000000
..............................................................................................ATT---TCAAGTA--TTTTCTGGA............................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTTGC.........2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAGTATCC...............2611.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................GGGCGTCTGGTATGAGTAT..........................1911.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTATGAGTATGCAA......................2711.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTT...........2311.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTAT................................1911.001000000000000000000000000000000000000000000000000000000000000010
................................................................TCAGAATTGTTGTTGAACACGT............................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATGAGTATGCAAAGTATCCATTTGCC........2611.001000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTATGCAAAGTATCCATTTGCC........2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCAAAGTATCCA..............2711.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GCAAAGTATCCATTTGCCTTTGAA..2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TATGGGCGTCTGGTATGAGTATGCAAAGT...................2911.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................GAGTATGCAAAGTATCCATTT...........2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................AAGTA--TTTTCTGGAATGTCTCATGAC................................................................................................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATA--GATTAGATAGATAGTTTTGATAAATG---AGTTTTTAATCCATTAT------------AACAG------CGTTGAGCCTGTTGACCTGAATCTATTCAATCTTTTTTTCTGGAACAATTCATGATATAATA---ACGCTTCAGATAGTAA--CAAAAACAGCTGATTCATTTGAC------------------------TTGT------------------------------------------TTTC-AATTG--TC--TTTCAGTACATGGGCGTCTGGTATGAGTATGCGAAGTATCCGTTTCTCTTTGAGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTATGAGTATG.........................2416.006310002
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTATGAGTATGC........................2513.003300000
..................................................................................................................................................................................................................................................................................CATGGGCGTCTGGTATGAGTATG.........................2313.003200001
............................................................................................................................................................................................................................................................................................TGGTATGAGTATGCGAAGT...................1912.002200000
...........................................................................................................................................................................................................................................................................................CTGGTATGAGTATGCGAAGTATCCGT.............2612.002200000
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTATGAGTATG.........................2612.002000002
................................................................................................................................................................................................................................................................................................ATGAGTATGCGAAGTATCCGTT............2212.002100001
................................................................................................................................................................................................................................................................................................ATGAGTATGCGAAGTATCCGT.............2112.002200000
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTATGAGTATGC........................2712.002200000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGCGAA.....................2612.002200000
..............................................................................................................................................................................................................................................................................................GTATGAGTATGCGAAGTATCCGTTT...........2511.001100000
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTATGA..............................2111.001000001
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCGAAGTATCCGT.............2811.001000001
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTATGAGT............................2311.001000001
..........................................................................................................................................................A--CAAAAACAGCTGATTCATTTGAC------------------------TTGT------------------------------------------T.......................................................................2911.001100000
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTATG...............................2011.001000001
...........................................................................................................................................................................................................................................................................................CTGGTATGAGTATGCGAAGT...................2011.001001000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATG.........................2211.001100000
................................................................................................................................................................................................................................................................................................ATGAGTATGCGAAGTATCCGTTT...........2311.001100000
..................................................................................................................................................................................................................................................................................CATGGGCGTCTGGTATGAGTATGCGA......................2611.001100000
....................................................................................................................................................................................................................................................................................TGGGCGTCTGGTATGAGTATGC........................2211.001000001
....................................................................................................................................................................................................................................................................................TGGGCGTCTGGTATGAGT............................1811.001100000
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTATGA..............................1911.001000001
......................................................................................................................................................................................................................................................................................GGCGTCTGGTATGAGTATGCGAAGT...................2511.001100000
.........................................................................................................................................................................................................................................................................................GTCTGGTATGAGTATGCGAAGTAT.................2411.001001000
.....................................................................................................................................................................................................................................................................................GGGCGTCTGGTATGAGTATGC........................2111.001000001
...................................................................................................................................................GATAGTAA--CAAAAACAGCTGATT......................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................GTATCCGTTTCTCTTTGAG..1911.001100000
...........................................................................................................................................................................................................................................................................................CTGGTATGAGTATGCGAAGTATC................2311.001000001
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTATGAGTATGCGAAGT...................2811.001100000
....................................................................................................................................................................................................................................................................................................GTATGCGAAGTATCCGTTT...........1911.001100000
droGri2
TTTTA--------------------------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT-----------------------------------------------TTGC-AATACTTTACAGTATATGGGCATCTGGTATGAGTACTCAAGGTATCCATTTGCCTTTGAAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................ATCTGGTATGAGTACTCAAGGTA..................2311.00101
droWil2
TTTCT--------------------------AA-----------------------------------AATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG--TTTCAGTATTTGGGAATTTGGTACGAGTATTCGAAATATCCATTTGTCTTTGAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................ATTTGGGAATTTGGTACGAGT............................2113.00300300
...................................................................................................................................................................................................................................................................................................AGTATTCGAAATATCCATTTGTC........2311.00101000
........................................................................................................................................................................................................................................................................................AATTTGGTACGAGTATTCGA......................2011.00100100
........................................................................................................................................................................................................................................................................................AATTTGGTACGAGTATTCGAAAT...................2311.00100100
...............................................................................................................................................................................................................................................................................GTATTTGGGAATTTGGTACGA..............................2111.00100100
......................................................................................................................................................................................................................................................................................GGAATTTGGTACGAGTATT.........................1911.00100100
....................................................................................................................................................................................................................................................................................TGGGAATTTGGTACGAGTATTCGAAAT...................2711.00100100
.................................................................................................................................................................................................................................................................................ATTTGGGAATTTGGTACGA..............................1911.00101000
..........................................................................................................................................................................................................................................................................................TTTGGTACGAGTATTCGAAAT...................2111.00100100
..................................................................................................................................................................................................................................................................................TTTGGGAATTTGGTACGA..............................1811.00100100
.........................................................................................................................................................................................................................................................................................ATTTGGTACGAGTATTCGAAAT...................2211.00100100
dp5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACTTGGGGATCTGGTACGAGCACAGCAAGTATCCATTTGCATTCGAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGAGCA...........................2222.0040400000000
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGA..............................1922.0040400000000
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGAGCACAG........................2521.0020100001000
................................................................................................................................................................................................................................................................................................ACGAGCACAGCAAGTATCCAT.............2120.5010100000000
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGAGCACAGCA......................2720.5010100000000
.....................................................................................................................................................................................................................................................................................................CACAGCAAGTATCCATTTGCATTCGA...2620.5010100000000
.............................................................................................................................................................................................................................................................................................................GTATCCATTTGCATTCGAAAT2120.5010100000000
..........................................................................................................................................................................................................................................................................................TCTGGTACGAGCACAGCAAGT...................2120.5010100000000
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGAGCACAGCAA.....................2820.5010100000000
..................................................................................................................................................................................................................................................................................................GAGCACAGCAAGTATCCATTTGC.........2320.5010100000000
...........................................................................................................................................................................................................................................................................................................AAGTATCCATTTGCATTCGAA..2120.5010100000000
..................................................................................................................................................................................................................................................................................CTTGGGGATCTGGTACGAGCACAGCA......................2620.5010100000000
................................................................................................................................................................................................................................................................................................ACGAGCACAGCAAGTATCCATTTG..........2420.5010100000000
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGAGCACAGC.......................2620.5010100000000
..................................................................................................................................................................................................................................................................................CTTGGGGATCTGGTACGAGC............................2020.5010100000000
................................................................................................................................................................................................................................................................................TACTTGGGGATCTGGTAC................................1820.5010100000000
droPer2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACTTGGGGATCTGGTACGAGCACAGCAAGTATCCGTTTGCATTCGAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGAGCACAGC.......................2611.001000001
.................................................................................................................................................................................................................................................................................ACTTGGGGATCTGGTACGA..............................1911.001000001
droAna3
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAGTACTTGGGAGTCTGGTACGAATACTCCAAGTATCCCTTCGCCTTTGAGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................GTCTGGTACGAATACTCCAAGT...................2216.006300021
.................................................................................................................................................................................................................................................................................ACTTGGGAGTCTGGTACGAATACTC........................2514.004101002
...............................................................................................................................................................................................................................................................................GTACTTGGGAGTCTGGTAC................................1914.004100012
.................................................................................................................................................................................................................................................................................ACTTGGGAGTCTGGTACGA..............................1913.003000030
..................................................................................................................................................................................................................................................................................CTTGGGAGTCTGGTACGAATACTCCAA.....................2713.003200010
....................................................................................................................................................................................................................................................................................................ATACTCCAAGTATCCCTTCGCCTT......2412.002110000
............................................................................................................................................................................................................................................................................................................AGTATCCCTTCGCCTTTGA...1912.002101000
....................................................................................................................................................................................................................................................................................................ATACTCCAAGTATCCCTTCGC.........2112.002200000
...............................................................................................................................................................................................................................................................................GTACTTGGGAGTCTGGTACGA..............................2112.002200000
....................................................................................................................................................................................................................................................................................................ATACTCCAAGTATCCCTTCGCCTTTGA...2712.002200000
.................................................................................................................................................................................................................................................................................ACTTGGGAGTCTGGTACG...............................1811.001100000
..................................................................................................................................................................................................................................................................................CTTGGGAGTCTGGTACGA..............................1811.001001000
...................................................................................................................................................................................................................................................................................................AATACTCCAAGTATCCCTTCGCCTTC.....2611.001010000
.............................................................................................................................................................................................................................................................................................................GTATCCCTTCGCCTTTGA...1811.001100000
................................................................................................................................................................................................................................................................................TACTTGGGAGTCTGGTACGA..............................2011.001000010
.........................................................................................................................................................................................................................................................................................................CCAAGTATCCCTTCGCCTTTGA...2211.001100000
....................................................................................................................................................................................................................................................................................................ATACTCCAAGTATCCCTTCGCCTTTGAG..2811.001100000
....................................................................................................................................................................................................................................................................................................ATACTCCAAGTATCCCTTCGCCTTT.....2511.001100000
..........................................................................................................................................................................................................................................................................................TCTGGTACGAATACTCCAA.....................1911.001100000
.........................................................................................................................................................................................................................................................................................GTCTGGTACGAATACTCCAAGTATCCC..............2711.001010000
.......................................................................................................................................................................................................................................................................................................CTCCAAGTATCCCTTCGCCTTTGA...2411.001001000
.............................................................................................................................................................................................................................................................................................................GTATCCCTTCGCCTTTGAGAC2111.001010000
.................................................................................................................................................................................................................................................................................ACTTGGGAGTCTGGTACGAATACTCCAA.....................2811.001100000
....................................................................................................................................................................................................................................................................................................ATACTCCAAGTATCCCTTCGCCT.......2311.001010000
...........................................................................................................................................................................................................................................................................................CTGGTACGAATACTCCAAGT...................2011.001100000
.................................................................................................................................................................................................................................................................................ACTTGGGAGTCTGGTACGAATACTCC.......................2611.001100000
.................................................................................................................................................................................................................................................................................ACTTGGGAGTCTGGTACGAATA...........................2211.001010000
.............................................................................................................................................................................................................................................................................................................GTATCCCTTCGCCTTTGAG..1911.001100000
droBip1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTACATGGGCGTCTGGTACGAGTACTCCAAGTACCCCTTCGCCTTTGAGATSizeHit CountTotal NormTotal
No Reads
droKik1
TTCAT--------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT-AACC--CTCTAGTATATGGGCATCTGGTACGAGTACTCCAAATATCCATTTGCCTTTGAGATSizeHit CountTotal NormTotal
No Reads
droFic1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTACATGGGCCTCTGGTATGAGTACGCCAAGTATCCATTTGTCTTTGAGTTSizeHit CountTotal NormTotal
No Reads
droEle1
AATAT--------------------------TTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT--------------------TTAATT---------TATTATATTC-AA----TATTAGTACATGGGTGTCTGGTATGAGTACTCCAAATATCCATTTGCCTTTGAGATSizeHit CountTotal NormTotal
No Reads
droRho1
TTAAT--------------------------ATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------TTATTTATTAT----TTTT-AACT---GT--TGTTAGTACCTGGGTGTCTGGTACGAGTACTCCAAATATCCATTCGCCTTTGAGATSizeHit CountTotal NormTotal
No Reads
droBia1
TTTAT--------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTT--TC--CTTCAGTACATGGGTGTCTGGTACGAGTACTCAGCTTACCCATTTGCCTTTGAGATSizeHit CountTotal NormTotal
No Reads
droTak1
ACTTC--------------------------AA-----------------------------------GCTTA-----CTATTTGTTGGTTTG--------------------TTTGCATGTTATATG----AACATCTGC-----------------------------TTCAACAGTC--GTAA-----------------AATTGTTACATTTTTTTAAAGAGGAAATTATTTAATT-------AATAATT-AATTT--TT--TTGTAGTACATGGGCGTCTGGTACGAGTACGCCGCGTATCCATTTGCCTTTGAGATSizeHit CountTotal NormTotal
No Reads
droEug1
ATTAC--------------------------ATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------CTAATT-------AATAATT--ATCT--GT--CTTTAGTACATGGGTGTCTGGTATGAGTACTCCAAGTACCCCTTTGCCTTTGAAGTSizeHit CountTotal NormTotal
No Reads
dm3
TA-----------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCTTACAT--------------------TGTATTTATTACTATTATTATTTCG-AATA--CTTCAGTATATGGGCGTCTGGTACGAGTACGCAGCCTATCCATTTGCTTTCGAGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGAGTACGC........................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000300000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGTACGC........................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTACGAGTAC..........................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000101000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGAGTA...........................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000
..................................................................................................................................................................................................................................................................................TATGGGCGTCTGGTACGAGT............................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGAGT............................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................TGGGCGTCTGGTACGAGTACGC........................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGAGTAC..........................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAG.............................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TATGGGCGTCTGGTACGAGTACGCA.......................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTACGA..............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGAGTACG.........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGT............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TATGGGCGTCTGGTACGAGTACGC........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000
....................................................................................................................................................................................................................................................................................TGGGCGTCTGGTACGAGTACG.........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGTA...........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................TATGGGCGTCTGGTACGAGTAC..........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGA..............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGAGTACGCAGCC....................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGTACG.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................AATA--CTTCAGTATATGGGCGTCTG....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGTACGCAGCC....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ACGAGTACGCAGCCTATCCATTT...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TGGGCGTCTGGTACGAGTA...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATATGGGCGTCTGGTACGA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................TGGGCGTCTGGTACGAGT............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATATGGGCGTCTGGTACGAG.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACGAGTACGCAGC.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTACGAGTACGCA.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTACG...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATATGGGCGTCTGGTACGAGTACGC........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................CCTATCCATTTGCTTTCGA...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTCTGGTACGAGTACGCA.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GCGTCTGGTACGAGTACGCA.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTACG...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTACGAGTACGC........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................TATGGGCGTCTGGTACGAGTA...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TTATTTCG-AATA--CTTCAG..................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GAGTACGCAGCCTATCCA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATATGGGCGTCTGGTACGG..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATATGGGCGTCTGGTACGAGTAC..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTCTGGTACGAGT............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAGCCTATCCATTTGCTTTCGAGA.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CTGGTACGAGTACGCAGCC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAGCCTATCCATTTGCTTTCGAG..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGTAC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTCTGGTAGT...............................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
TTGTT--------------------------AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------TGTATTTATTATTATTATTATTCCA-AATA--CTTCAGTATATGGGTGTGTGGTACGAGTACGCGGCCTATCCATTTGCTTTCGAGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................CGGCCTATCCATTTGCTTTCGA...2211.00100001000000000000
droSec2
TTATT--------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTATTATTCCG-AATA--CTTCAGTATATGGGCGTGTGGTACGAGTACGCGGCGTATCCATTTGTTTTCGAGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................GTGTGGTACGAGTACGCGGC.....................2012.0020200
.............................................................................................................................................................................................................................................................................................................GTATCCATTTGTTTTCGAG..1911.0010010
..................................................................................................................................................................................................................................................................................TATGGGCGTGTGGTACGAGTACGCGGC.....................2711.0010010
.................................................................................................................................................................................................................................................................................ATATGGGCGTGTGGTACGAGTA...........................2211.0010100
.................................................................................................................................................................................................................................................................................ATATGGGCGTGTGGTACGAGTACGCGG......................2711.0011000
droYak3
ACGTA--------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTAACAT--------------------TGTATTTAT---TGTTATTTTTCTG-AATA--CTTCAGTATATGGGCGTTTGGTATGAGTACGCCGCCTATCCATTTGCCTTCGAGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................ATATGGGCGTTTGGTATGA..............................1914.00401000030000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTTTGGTATGA..............................2113.00302000010000
.................................................................................................................................................................................................................................................................................ATATGGGCGTTTGGTATGAGTACGC........................2513.00300000030000
.........................................................................................................................................................................................................................................................................................GTTTGGTATGAGTACGCCGCCTATC................2512.00201000010000
.................................................................................................................................................................................................................................................................................ATATGGGCGTTTGGTATGAGTA...........................2212.00200000110000
.........................................................................................................................................................................................................................................................................................GTTTGGTATGAGTACGCCGC.....................2012.00200000110000
.................................................................................................................................................................................................................................................................................ATATGGGCGTTTGGTATGAGT............................2112.00200100010000
...........................................................................................................................................................................................................................................................................................................GCCTATCCATTTGCCTTCGA...2012.00201100000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTTTGGTATGAGTACGCC.......................2612.00200000020000
.........................................................................................................................................................................................................................................................................................GTTTGGTATGAGTACGCCGCCT...................2212.00200000110000
.........................................................................................................................................................................................................................................................................................GTTTGGTATGAGTACGCCGCCTATCCATT............2911.00100000010000
.........................................................................................................................................................................................................................................................................................GTTTGGTATGAGTACGCC.......................1811.00100000100000
................................................................................................................................................................................................................................................................................TATATGGGCGTTTGGTATGAGTA...........................2311.00101000000000
....................................................................................................................................................................................................................................................................................................GTACGCCGCCTATCCATTTGCCTTCGA...2711.00101000000000
..........................................................................................................................................................................................................................................................................................................CGCCTATCCATTTGCCTTC.....1911.00101000000000
................................................................................................................................................................................................................................................................................................ATGAGTACGCCGCCTATCC...............1911.00101000000000
..........................................................................................................................................................................................................................................................................................................CGCCTATCCATTTGCCTTCGA...2111.00101000000000
.............................................................................................................................................................................................................................................................................................GGTATGAGTACGCCGCCTATCC...............2211.00101000000000
...................................................................................................................................................................................................................................................................................................AGTACGCCGCCTATCCATTTGCCTTCGA...2811.00101000000000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTTTGGTATGAGT............................2311.00101000000000
.................................................................................................................................................................................................................................................................................ATATGGGCGTTTGGTATGAGTAC..........................2311.00100000010000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTTTGGTAT................................1911.00100000010000
.....................................................................................................................................................................................................................................................................................................TACGCCGCCTATCCATTTGCCTT......2311.00101000000000
....................................................................................................................................................................................................................................................................................................GTACGCCGCCTATCCATTTGCCTT......2411.00101000000000
..................................................................................................................................................................................................................................................................................TATGGGCGTTTGGTATGAGTAC..........................2211.00100000010000
...............................................................................................................................................................................................................................................................................GTATATGGGCGTTTGGTATGAGTACGCC.......................2811.00100000010000
....................................................................................................................................................................................................................................................................................................GTACGCCGCCTATCCATTTGCCT.......2311.00101000000000
.......................................................................................................................................................................................................................................................................................GCGTTTGGTATGAGTACGCC.......................2011.00101000000000
droEre2
ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTTTTGTG-AATA--CTCCAGTACATGGGCGTCTGGTACGAGTACGCGGCCTATCCATTTGCATTCGAGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTACGA..............................1916.0060000330
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTACGAGTACGC........................2714.0040000130
..................................................................................................................................................................................................................................................................................CATGGGCGTCTGGTACGAGTACGC........................2414.0040000220
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTACGAGTACGC........................2513.0030000120
......................................................................................................................................................................................................................................................................................................ACGCGGCCTATCCATTTGCATTCGA...2513.0030000120
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTACGA..............................2113.0030000210
.........................................................................................................................................................................................................................................................................................GTCTGGTACGAGTACGCGGC.....................2012.0020000110
..........................................................................................................................................................................................................................................................................................................GGCCTATCCATTTGCATTCGA...2112.0021000010
........................................................................................................................................................................................................................................................................................CGTCTGGTACGAGTACGCGGCCT...................2312.0020010100
.........................................................................................................................................................................................................................................................................................GTCTGGTACGAGTACGCGGCCT...................2212.0020000110
....................................................................................................................................................................................................................................................................................................GTACGCGGCCTATCCATTTGCATT......2412.0022000000
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTACGAGTAC..........................2311.0010000100
................................................................................................................................................................................................................................................................................TACATGGGCGTCTGGTACGA..............................2011.0010000100
....................................................................................................................................................................................................................................................................................................GTACGCGGCCTATCCATTTGCATTCGA...2711.0010000010
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTACG...............................2011.0010000100
.......................................................................................................................................................................................................................................................................................GCGTCTGGTACGAGTACGCGGC.....................2211.0011000000
...........................................................................................................................................................................................................................................................................................CTGGTACGAGTACGCGGCC....................1911.0010000100
...............................................................................................................................................................................................................................................................................GTACATGGGCGTCTGGTACGAGTA...........................2411.0010000010
......................................................................................................................................................................................................................................................................................................ACGCGGCCTATCCATTTGC.........1911.0010000010
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTACGAGT............................2111.0010000100
.......................................................................................................................................................................................................................................................................................................CGCGGCCTATCCATTTGCATTCGA...2411.0010000010
..............................................................................................................................................................................................................................................................................................GTACGAGTACGCGGCCTATCCATTT...........2511.0011000000
........................................................................................................................................................................................................................................................................................CGTCTGGTACGAGTACGCGGCCTATCC...............2711.0010000100
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTACGAGTA...........................2211.0010000100
..................................................................................................................................................................................................................................................................................CATGGGCGTCTGGTACGAGTACGCGGC.....................2711.0010000100
....................................................................................................................................................................................................................................................................................TGGGCGTCTGGTACGAGTAC..........................2011.0010000100
...........................................................................................................................................................................................................................................................................................CTGGTACGAGTACGCGGC.....................1811.0010000010
...........................................................................................................................................................................................................................................................................................CTGGTACGAGTACGCGGCCT...................2011.0011000000
........................................................................................................................................................................................................................................................................................................GCGGCCTATCCATTTGCATTCGA...2311.0011000000
..................................................................................................................................................................................................................................................................................CATGGGCGTCTGGTACGAGTACGCGGCC....................2811.0010000100
.............................................................................................................................................................................................................................................................................................................CTATCCATTTGCATTCGA...1811.0010000010
.....................................................................................................................................................................................................................................................................ATA--CTCCAGTACATGGGCGTCTGG...................................2411.0010000100
..................................................................................................................................................................................................................................................................................................GAGTACGCGGCCTATCCATTTGCATT......2611.0010000010
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGT............................1911.0010000100
...................................................................................................................................................................................................................................................................................ATGGGCGTCTGGTACGAGTAC..........................2111.0010000100
.................................................................................................................................................................................................................................................................................................CGAGTACGCGGCCTATCCATTTG..........2311.0010010000
.............................................................................................................................................................................................................................................................................................GGTACGAGTACGCGGCCTATCC...............2211.0011000000
..................................................................................................................................................................................................................................................................................CATGGGCGTCTGGTACGA..............................1811.0010000010
.................................................................................................................................................................................................................................................................................ACATGGGCGTCTGGTACGAGTACGCGGC.....................2811.0010000100

Generated: 05/16/2015 at 09:26 PM