ID:

dvi_10741

 Coordinate:

scaffold_12963:7180545-7180695 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.4 -17.4 -17.3

Flybase annnotation

CDS [Dvir\GJ16993-cds]; exon [dvir_GLEANR_1750:1]; intron [Dvir\GJ16993-in]; Antisense to intron [Dvir\GJ10820-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12875:395968-395990 +
  2. scaffold_12875:857599-857621 +
  3. scaffold_12875:7239526-7239548 +
  4. scaffold_12875:9209485-9209507 +
  5. scaffold_12875:15338060-15338082 +
  6. scaffold_12875:17358751-17358773 +
  7. scaffold_12928:2823351-2823373 +
  8. scaffold_12932:111355-111377 +
  9. scaffold_12963:3348644-3348666 +
  10. dvi_12112  scaffold_12963:15802231-15802253 +
  11. scaffold_12963:19722716-19722738 +
  12. scaffold_12970:1873946-1873968 +
  13. scaffold_13042:2388867-2388889 +
  14. scaffold_13042:4047114-4047136 +
  15. scaffold_13042:4849115-4849137 +
  16. scaffold_13047:15369480-15369502 +
  17. scaffold_13049:4682402-4682424 +
  18. scaffold_13049:5081860-5081882 +
  19. scaffold_13049:6165792-6165814 +
  20. scaffold_13049:8879541-8879563 +
  21. scaffold_12723:1886158-1886180 +
  22. scaffold_12822:2408098-2408120 +
  23. scaffold_12823:1849339-1849361 +
  24. scaffold_12875:8747436-8747458 +
  25. scaffold_12875:11957459-11957481 +
  26. scaffold_12928:1393456-1393478 +
  27. scaffold_12928:4889347-4889369 +
  28. scaffold_12928:5768905-5768927 +
  29. scaffold_12928:7631772-7631794 +
  30. scaffold_12932:181088-181110 +
  31. scaffold_12970:10984314-10984336 +
  32. scaffold_13042:54759-54781 +
  33. scaffold_13047:7632998-7633020 +
  34. scaffold_13047:9440297-9440319 +
  35. scaffold_13047:10663638-10663660 +
  36. scaffold_13047:12099469-12099491 +
  37. scaffold_13049:58335-58357 +
  38. scaffold_13049:1836687-1836709 +
  39. scaffold_13049:11655347-11655369 +
  40. scaffold_13049:12320662-12320684 +
  41. scaffold_883:2121-2143 +
  42. scaffold_12855:8626643-8626665 +
  43. scaffold_12875:147702-147724 +
  44. scaffold_12875:589014-589036 +
  45. scaffold_12875:7806506-7806528 +
  46. scaffold_12875:10135887-10135909 +
  47. scaffold_12875:14052047-14052069 +
  48. scaffold_12928:6481010-6481032 +
  49. scaffold_12963:9130420-9130442 +
  50. scaffold_12970:3212199-3212221 +
  51. scaffold_12970:6132539-6132561 +
  52. scaffold_12970:11196488-11196510 +
  53. scaffold_13042:2129580-2129602 +
  54. scaffold_13042:3304933-3304955 +
  55. scaffold_13047:2631378-2631400 +
  56. scaffold_13047:7234162-7234184 +
  57. scaffold_13049:4245566-4245588 +
  58. scaffold_13049:15527634-15527656 +
  59. scaffold_13049:18266816-18266838 +
  60. scaffold_13049:22057526-22057548 +
  61. scaffold_597:302-324 +
  62. scaffold_12822:1391358-1391380 +
  63. scaffold_12875:1088933-1088955 +
  64. scaffold_12875:15051055-15051077 +
  65. scaffold_12875:17808561-17808583 +
  66. scaffold_12875:19887246-19887268 +
  67. scaffold_12963:799932-799954 +
  68. scaffold_12963:1162929-1162951 +
  69. dvi_10741  scaffold_12963:7180646-7180668 +
  70. scaffold_12963:9128955-9128977 +
  71. scaffold_12970:10225022-10225044 +
  72. scaffold_13042:242653-242675 +
  73. scaffold_13047:77292-77314 +
  74. scaffold_13047:1905069-1905091 +
  75. scaffold_13049:4914326-4914348 +
  76. scaffold_13049:14099540-14099562 +
  77. scaffold_13049:15333983-15334005 +
  78. scaffold_13049:19599926-19599948 +
  79. scaffold_13324:1365934-1365956 +
  80. scaffold_13324:1580421-1580443 +
  81. scaffold_12726:1265154-1265176 +
  82. scaffold_12758:409433-409455 +
  83. scaffold_12875:1545393-1545415 +
  84. scaffold_12875:1694663-1694685 +
  85. scaffold_12875:4222315-4222337 +
  86. scaffold_12875:7260882-7260904 +
  87. scaffold_12932:964775-964797 +
  88. scaffold_12963:4057648-4057670 +
  89. scaffold_12963:4533286-4533308 +
  90. scaffold_12963:5237721-5237743 +
  91. scaffold_12963:11701456-11701478 +
  92. scaffold_12970:6935687-6935709 +
  93. scaffold_12970:7008350-7008372 +
  94. scaffold_13047:7475760-7475782 +
  95. scaffold_13047:7528082-7528104 +
  96. dvi_17479  scaffold_13047:18357236-18357258 +
  97. scaffold_13049:6637456-6637478 +
  98. scaffold_13049:17488309-17488331 +
  99. scaffold_13246:1771019-1771041 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTTACGTTTCGTATTCATCGTTTTCCTGCTGAAGTGGACGTATGCACAAGGTAAGACCATGTTTGGACTCCTTCTACAACTGTGTCTGTGTGTGTGTGCTTTATGTGTGTGTTTTGTGTGTTATAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTATGTGTGTTTGCTTGCCCATTCTGTTTGTGCAGCAGCAGCAGCTGCTGAAGTGCAGTTTCTCGCATTTGTTCAAG
**************************************************...((((((.(((((((.....)))).))))).))))...................................................................................(((((((.(((....))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V116
male body		 SRR060673
9_ovaries_total
 SRR060680
 9xArg_testes_total
.......................................................................................................................................................TGTGTGTGTGTGTGTGTGTGTGG............................................................................. 23 0 20 0.20 4 4 0 0 0
.................................................................................................................TTGTGTGTTAAAGGAGTGTGTG.................................................................................................................... 22 3 9 0.11 1 0 1 0 0
................................................................................................TACTTTATGTGTGTGTTT......................................................................................................................................... 18 1 10 0.10 1 0 0 1 0
..........................................................................................................................ATAAGTGTGTGTGTGGGTGTGT........................................................................................................... 22 1 20 0.05 1 0 0 0 1
............................................................................................................................................................................................................TGCAGGAGCAGCATCTGCTAA.......................... 21 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

AAATGCAAAGCATAAGTAGCAAAAGGACGACTTCACCTGCATACGTGTTCCATTCTGGTACAAACCTGAGGAAGATGTTGACACAGACACACACACACGAAATACACACACAAAACACACAATATTCACACACACACACACACACACACACACACACACACACACACACACACCCATACACACAAACGAACGGGTAAGACAAACACGTCGTCGTCGTCGACGACTTCACGTCAAAGAGCGTAAACAAGTTC
**************************************************...((((((.(((((((.....)))).))))).))))...................................................................................(((((((.(((....))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
.....................................................................................................................................................................................................................TCGTGGACGACTTCACGTTA.................. 20 2 2 0.50 1 1 0
............................................................................GTTGACACAGACACACACATA.......................................................................................................................................................... 21 1 4 0.25 1 0 1
....................................................................................................................................................................................................................TTCGTGGACGACTTCACGTTA.................. 21 3 10 0.10 1 1 0
.....................................................................................................................................................................................................................TCGTCCACTACTTCACGTTA.................. 20 3 13 0.08 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:7180495-7180745 + dvi_10741 TTTACGTTT------CGTATTCATCG-TTTTCCTGCTGAAGTGGACGTATGCACAAG-GTAAGACCATGTTTG---GACTCCTTCTAC--------------------------------------------------------------AACTG--TG------TCTGTGTG------TG---------TGTGCTTTATGTGT----GTGTTTTGTGTGT------------TATAAGTGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTGTGTGTGTG-TGT------------GTGTGTG----------TGG--------G------T--A------T--------G----TGTG---TTTGCTTGCCCATT----CTG-------------------------------------------------------------------TTTGTGC--AGCAGC----------AGCAGCT-------G--------------CTGAAGTGCAGTTTCTCG---CATTTGTTCAAG
droMoj3 scaffold_6500:3731319-3731509 - TTTACGTTT------CGTATTCATCG-TTATACTGCTGAAGTGGACCTATGCACAAG-GTAAGACCATGTTC---------------------C--------------------------------------------------------AAGTG--TA------TTCAC-TA-----------------TGTGT-GAGTGTGTG----TGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG--------TG-TGC------------ATGTGTG----------TGGT-T--A--G----------------T--------G----TGTG---TTTGCTTGGGCATT----CTG-------------------------------------------------------------------TTTGTGC--AGCAGC----------A---GCT-------G--------------TTCAAGTGCAGTTTCTCA---CATTTGTTCAAG
droGri2 scaffold_15252:10326388-10326621 + TTTACATTT------CGTATTCATCG-TTTTCCTGCTGAAGTGGACCTATGCACAAG-GTAAGTCCATGTTTT---GAGTCCTTCTAC--------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------CTTCTGT--------------------GTGTCTAA--GTTT-TCTGTGTGTGCGTGTGTGTGTATATTCGTATTC------GTTTT-------CAGAG------TGTG--------TG-TGG------------GTGTTTG----------TG------A--A----------------T--------A----TGTA---TTCACTTGGGCATT----CTG-------------------------------------------------------------------TTTGTGC--AGCTGT----------AGCTGCT-------G--------------TTGAAGTGCAGTTTCTCG---CATTTGTTCAAG
droWil2 scf2_1100000004909:9639133-9639326 - TTGCGTTTT------T--ATGAGTCG-TTGT-----------------CGGTTGCCG-------------------------------------CCGCACATGGTTCCAAGAGTCAGAGTTTTTTTTTTTAATGTGTTGTGCGTAATGTCCAGTG--TG------TGTGTGTG-----------------TGTGT-GTGTGTGTG----TGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------TGTGTGTGTGT--GTGT--------------------G---T------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAG
dp5 XL_group1a:6004253-6004411 - CTCTCTCTC------T--------------------------------------------------------------------------------------------------------------------------------------GACTG--TG------ACTGTGAT------T-----------GTG---ACTGAGT----GACTG---TGTTTG-----------------TGT---------------------------------------------------------------------------------------AC-----------GTGTGTGTGTGTGTTTGTTTTTATG------TTTGTGTGTG----------TGT---------------------------GT----GTGTG------TGTGTG--TGTTTGTGTTT--GT---------------------------------G----------------------CTG------TATGTA------------------------GCTCT-------CG-----------------------------------------------------------------TTTCGTTTCTCTCGGCATTTGTGCA-A
droPer2 scaffold_32:479159-479358 - TATACAATT------TATATTCTCCA-TATTCTCA---------------------------------------------------------------------------------------------------------------------ATA--TA------TATATATA-----------------TATAT-ACATATATA----TATA---TATATA-----------------TATATTTCCATC-------------------TGTAGTTTGCTTTCTTTCCTTTTTTCGTTTCGTTTAATTTAATTAATTGTATA--------------------------------------------------CTTATGTAAG----------TGTG--------TG-TGT------------AG----GTGTG------TGGGTGTGT--GTGTGTTT--A------T--------G----TGTG---TGGGTTTTTGCATT----TTG-------------------------------------------------------------------CT------------------------------------------------------------------------------------T
droAna3 scaffold_13337:2680493-2680633 + ACAGTATCTGGAGTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTG---------TGTGT-GTGTGTGTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GTGT--------GTGTG------------TGCGTGTGTGTG------T-GCGT----GTGTGTGTGC----G----------TGT------GTGTGTGCGT--GTGTG--T--------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGTG---TGTGTGTGCGTG
droBip1 scf7180000396737:45484-45725 - TTTACGTTT------CGTATTCATCG-TTTTCCTGCTCAAGTGGACCCATGCACAAG-GTAAGCGCA------AAAAAATACA-----AGCTCC--------------------------------------------------------AACTG--A---------------------------------------------------------------A-----------------TAAAAACCCATCCTGGCCAGGAATTTCCCTTCTTCGTTTGCCATCCTTCCTTTCTG-------------------------------G-AT-TGTGGGT------------------GC----------------------------------------------------T------------GG----GTG------------------------------------T--------G----TGAG---TTTGCCCG-GCATT--CTCTG-------------------------------------------------------------------TTTGTGC--AGCTGC----------C------ACAAGCTGGCATTCGGGGGCCAGGGCCGG---GC-AGGGG---ACTTCCCTCAAG
droKik1 scf7180000302476:708708-708842 + TGTGTGTGT------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-------TGTGT-GTGTGTGT----GTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTGTGT-------GT------------GT----GTGTGTGTGTGTGA--------GTATATGT--ATATTTGT--------G----AGTGTGT---G--------------ACA------------ACTGCAATT-GGAGTTTC----------------------------------------------------------------------------------------------------GGT-------------------TT
droFic1 scf7180000453855:345325-345539 + AGGACACTA---------------------TTGGGATTAAGTCGACGGCGGCAGCAG-TACACTGTGTGTTT-----------------------------------------------------------------------------------------------TTTATA-----------------TGCGT-ATA--------------------------------------------------------------------------------------------------------------------------CGATTG-TG-TCTGTGT------------------CTGCATGTATG------CTTGTGTGCG----------TGTG--------TG-TGT------------AT----GTGAG------TGGGAT--G--CTGTGAGT-------------------------------------G-----------------------------------TATTTTGTATTATTTTGTTTTTGCCTTTTGC-------CATTTTGTACATAA--ATCACC----------A----------GCAGCGAAATG-A---------------GA-CTGAG---GCTGAGAACGAA
droEle1 scf7180000491273:2209711-2209916 - TTTACGTTT------CGTATTCATCG-TTTTCCTGCTCAAGTGGACCCATGCACAAG-GTAAGCTGGACTAC-AAAAAATAGA-----ATAT--------------------------------------------------------------------------------A-------------------------------------------TATATA-----------------AAAAAACCCATCCTGGTCATGGATTTC--------------CTTCCTTCCTTTCTGG--------------------GTG-----------------------------------------------------------------------------------------------------------------------------------------------------T--------T----TGAG---TTTGCCTG-GCATTTTCTCTG-------------------------------------------------------------------TTTGTGC--AGCTGC----------C------ACAAAAAAGGGGGTG-T---------------AC-TCGGG---GTGCAATTGAAG
droRho1 scf7180000779914:669069-669247 + ATGGT-----------------------TTCTCTGTTGGCC------ACAACAGGA---------------------------------------------------------------TAT-----------------------------------------------------------------------------------------------ATCAA-----------------AACAATGCCATGTCCTTCCTTAATTTT--------------CATTTTCCCCCAGTGC--------------------GTGTGCGA-----G-TGTGTGT------------------GAGTGTATGTGAGTGTGTG------TGAGTG------TGTG--------TC-TGA------------GTGTGTG----------TG------A--GTGTGTGTCTGAGT--------------------G---T------G-----------------------------------GGGCTTGCGGTTTGTTG-------------------------------TTGC--A---------------------------------------------------------------------------GC
droBia1 scf7180000302193:855850-856008 - TGTGTGTGT------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-------TGTGT-GTGTGTGT----GTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------TGTGTGTGTGT--GTGTGTGT--------G----TGTGTGT---G--TGTGC-------------------------------------------GT-------------ACCGCTTGACAT-------TCAATGC--AATTTT-----------GCCTCT-------G--------------CTTATTTTCA-----------------------
droTak1 scf7180000415381:115416-115551 - ACGTAT-ACGTAATATAC-CTTAACG-TTTGA----------------------------------------------------------------------------------------------------------------------TTGTT--TG------TGGGG-------------ATCAGTATGTGT-GTGTGTGTG----TGTG-------TG-----------------TGT---------------------------------------------------------------------------------------GT-----GT------------------GTGTGTGTGTG------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------GT------------GT--------------------------GTGTGTGT--GTGT--------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG
droEug1 scf7180000409672:6591643-6591831 - CTTGCCACA------G--------------------------------------CA--------------------------------------------------------------------------------------------------ATGTC-------CTGTGTT------TGTG-------TGAGT-TTATGTTT----GCTTC---TGGTTATGCCCCACAGTTGTAACCGT---------------------------------------------------------------------------------------GT---------------------------GTGTGTA--------TG------------AGTGTGTGTGTGTGTGTGTG-TGT------------TGGTATG----------GGA--------ATATATAT--------------------------A---TGTATATGCGGATT----CCA-------------------------------ATCA-------------A------------------TA-TCGT--AGACGC----------AGTCGCCGCTGGT-----------------------------GGCCG---CTTTTGCCCATT
dm3 chrX:13335982-13336161 + CTTGTATCT------CGAATTCCTGG-CTGCCCTGTTTGAATTGCCATCGACAGGTG-CCCATTGCATTCA-----------------------TTGCACAGCTTTCCGTAAAGCA--GTCATTGTCCTGAATGTGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATGG-CG-TGTGTGT------------------GTGTGTGTGTG------TGTGTGTGTG----------TATG--------CG-TGT------------CT----GTGTG------TGGGCA--G--GATT------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droSim2 x:5737204-5737334 - TGTCTGTGT------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------------TGCCAG-TG-TGTGTGT------------------GTGTGTGTGTG------TGTGTGTGTGTGTGTGTGTCTAAGTGTGT-------GT------------GT--------------------------GTGTGTGT--GTAT--------------------T---T------CAGC-------------------------------------------CA-------------ACAAATTATC---------TCAATTT--AGCATA-----------ATATAT-------A--------------CTGAACTGCA-----------------------
droSec2 scaffold_9:1956576-1956742 - CACACG---------CACACAATCAGAGCTTTCTTT------------------------------------------------------------------------------------------------------------------TGGTG--TTTCTTTGTGTGT-------------GTGTGTGTGTGT-GTGTGTGTG----TGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TATGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------TGTGTGTGTGT--GTGTGTGTGTATCTATGTATATGTGTCT---G--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTGC-GC
droYak3 X:14556519-14556695 - CCCCCTTTC------C--------------------------------------------------------------------------------------------------------------------------------------CAGTG--TG------TGTGTATT-----------------TGTGT-GTGTGTGTG----TGTG---TGTGTG-----------------TGC---------------------------------------------------------------------------------------AT---------------------------GTGT--------GTGTT------------TGTGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------CGTGTGTGTGC--GTGCGTGT---------------------GTGCTT--------------------------------------------------------------GCTCC-------CATTTTGTTTGGACACGGAAATGGTTAACAGCAGCAACG-------G--------------AT-------------------GTTGTGTAAATT
droEre2 scaffold_4770:4975178-4975386 - TTTTGAATT------CATTTTATTAAATTTTTGTACTAATATGTATGTATGTATGTATGTATGT--ATGTAT----GTATGTATGT--ATGT--------------------------------------------------------------------------------A-------------------------------------------TGTATG-----------------TAT--------------------------------------------------------------------------------------------------------------------------------GTATG------------TATGTATGTATG------T-ATGTATGTATGTATGTAT----G--------------------TATGTATGT--ATGTATGTATGTATGTAT-----------------G-----TATGTATGTATGTATGTATG------TATGTA------------------------TGTAT-------GT-------------------------------------------------ATG-T---------------AT-TTATG---TATGTATTTATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTACGTTT------CGTATTCATCG-TTTTCCTGCTGAAGTGGACGTATGCACAAG-GTAAGACCATGTTTG---GACTCCTTCTAC--------------------------------------------------------------AACTG--TG------TCTGTGTG------TG---------TGTGCTTTATGTGT----GTGTTTTGTGTGT------------TATAAGTGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTGTGTGTGTG-TGT------------GTGTGTG----------TGG--------G------T--A------T--------G----TGTG---TTTGCTTGCCCATT----CTG-------------------------------------------------------------------TTTGTGC--AGCAGC----------AGCAGCT-------G--------------CTGAAGTGCAGTTTCTCG---CATTTGTTCAAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTG-TGT------------GTGTGTG----------TGG--------.....................................................................................................................................................................................................................23200.204000000000000000000000000000000000000000000000000000000000000400
droMoj3
TTTACGTTT------CGTATTCATCG-TTATACTGCTGAAGTGGACCTATGCACAAG-GTAAGACCATGTTC---------------------C--------------------------------------------------------AAGTG--TA------TTCAC-TA-----------------TGTGT-GAGTGTGTG----TGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG--------TG-TGC------------ATGTGTG----------TGGT-T--A--G----------------T--------G----TGTG---TTTGCTTGGGCATT----CTG-------------------------------------------------------------------TTTGTGC--AGCAGC----------A---GCT-------G--------------TTCAAGTGCAGTTTCTCA---CATTTGTTCAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTACATTT------CGTATTCATCG-TTTTCCTGCTGAAGTGGACCTATGCACAAG-GTAAGTCCATGTTTT---GAGTCCTTCTAC--------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------CTTCTGT--------------------GTGTCTAA--GTTT-TCTGTGTGTGCGTGTGTGTGTATATTCGTATTC------GTTTT-------CAGAG------TGTG--------TG-TGG------------GTGTTTG----------TG------A--A----------------T--------A----TGTA---TTCACTTGGGCATT----CTG-------------------------------------------------------------------TTTGTGC--AGCTGT----------AGCTGCT-------G--------------TTGAAGTGCAGTTTCTCG---CATTTGTTCAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTGCGTTTT------T--ATGAGTCG-TTGT-----------------CGGTTGCCG-------------------------------------CCGCACATGGTTCCAAGAGTCAGAGTTTTTTTTTTTAATGTGTTGTGCGTAATGTCCAGTG--TG------TGTGTGTG-----------------TGTGT-GTGTGTGTG----TGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------TGTGTGTGTGT--GTGT--------------------G---T------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CTCTCTCTC------T--------------------------------------------------------------------------------------------------------------------------------------GACTG--TG------ACTGTGAT------T-----------GTG---ACTGAGT----GACTG---TGTTTG-----------------TGT---------------------------------------------------------------------------------------AC-----------GTGTGTGTGTGTGTTTGTTTTTATG------TTTGTGTGTG----------TGT---------------------------GT----GTGTG------TGTGTG--TGTTTGTGTTT--GT---------------------------------G----------------------CTG------TATGTA------------------------GCTCT-------CG-----------------------------------------------------------------TTTCGTTTCTCTCGGCATTTGTGCA-ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................GT---------------------------------------------------------------------------------------AC-----------GTGTGTGTGTGTGT....................................................................................................................................................................................................................................................................................................................18200.2550000500000
.........................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTTTGTTTTT............................................................................................................................................................................................................................................................................................................1960.1710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------TGTGTG--TGTTTGTGTTT--G..........................................................................................................................................................................................................20200.1530300000000
......................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTTTGTT...............................................................................................................................................................................................................................................................................................................19200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------TGTGTG--TGTTTGTGTTT--...........................................................................................................................................................................................................19200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG--TGTTTGTGTTT--GT---------------------------------........................................................................................................................................................................18200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTGTG----------TGT---------------------------GT----GTG........................................................................................................................................................................................................................................18200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TGTGTG--TGTTTGTGTTT--...........................................................................................................................................................................................................18200.0510100000000
droPer2
TATACAATT------TATATTCTCCA-TATTCTCA---------------------------------------------------------------------------------------------------------------------ATA--TA------TATATATA-----------------TATAT-ACATATATA----TATA---TATATA-----------------TATATTTCCATC-------------------TGTAGTTTGCTTTCTTTCCTTTTTTCGTTTCGTTTAATTTAATTAATTGTATA--------------------------------------------------CTTATGTAAG----------TGTG--------TG-TGT------------AG----GTGTG------TGGGTGTGT--GTGTGTTT--A------T--------G----TGTG---TGGGTTTTTGCATT----TTG-------------------------------------------------------------------CT------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACAGTATCTGGAGTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTG---------TGTGT-GTGTGTGTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GTGT--------GTGTG------------TGCGTGTGTGTG------T-GCGT----GTGTGTGTGC----G----------TGT------GTGTGTGCGT--GTGTG--T--------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGTG---TGTGTGTGCGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................GT----------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTG---------TGTGT-GTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.408000008
........................................................................................................................................................................................................GTGTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------..................................................................................................................................................................................................................................................................................................................24200.306000006
........................................................................................................................................................................................................GTGTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------G.................................................................................................................................................................................................................................................................................................................25200.255000005
....................................................................................................................................................................................................................G---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GTGT--------GT....................................................................................................................................................................................................................................................................................................18200.153000003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------GTGTGTGCGT--GTGTG--T--------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------TG...................21200.102000011
..........................................................................................................................................................................................................GTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GT................................................................................................................................................................................................................................................................................................................24200.102100001
.......................................................................................................................................................................................................TGTGTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------..................................................................................................................................................................................................................................................................................................................25200.102000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG--T--------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGTG---TGTGTGTG....21200.102000011
..........................................................................................................................................................................................................GTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------..................................................................................................................................................................................................................................................................................................................22200.102000002
.................................................................................................................................................................................................................TGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GTGT--------GTG...................................................................................................................................................................................................................................................................................................22140.071000001
...............................................................................................................................................................................................................TGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GT................................................................................................................................................................................................................................................................................................................19200.051000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGC----G----------TGT------GTGTGTG................................................................................................................................................................................................................21200.051000010
..........................................................................................................................................................................................................................TGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GTGT--------GTGTG------------T....................................................................................................................................................................................................................................................................................19200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTG------T-GCGT----GTGTGTGTG................................................................................................................................................................................................................................................21200.051000010
.................T----------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTG---------TGTGT-GTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.........................................................................................................................................................................................................TGTGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GTG...............................................................................................................................................................................................................................................................................................................26200.051000001
................GT----------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTG---------TGTGT-G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
...........................................................................................................................................................................................................TGTGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------..................................................................................................................................................................................................................................................................................................................21200.051000001
...........................................................................................................................................................................TGTGTGTGTG---------TGTGT-GTGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
.............................................................................................................................................................................................................TGTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------G.................................................................................................................................................................................................................................................................................................................20200.051000001
........................................................................................................................................................................................................................................................................................................................................................................GT--------GTGTG------------TGCGTGTGTGTG------T-G................................................................................................................................................................................................................................................................21200.051000010
..........GAGTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTG---------TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
..............................................................................................................................................................................................................GTGTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------G.................................................................................................................................................................................................................................................................................................................19200.051000001
...........AGTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTG---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
.............................................................................................................................................................................TGTGTGTG---------TGTGT-GTGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000001
.........................................................................................................................................................................................................................GTGTG-----------------TGT---------------------------------------------------------------------------------------GC---------------------------GTGT--------GTGTG------------TG...................................................................................................................................................................................................................................................................................21200.051000010
droBip1
TTTACGTTT------CGTATTCATCG-TTTTCCTGCTCAAGTGGACCCATGCACAAG-GTAAGCGCA------AAAAAATACA-----AGCTCC--------------------------------------------------------AACTG--A---------------------------------------------------------------A-----------------TAAAAACCCATCCTGGCCAGGAATTTCCCTTCTTCGTTTGCCATCCTTCCTTTCTG-------------------------------G-AT-TGTGGGT------------------GC----------------------------------------------------T------------GG----GTG------------------------------------T--------G----TGAG---TTTGCCCG-GCATT--CTCTG-------------------------------------------------------------------TTTGTGC--AGCTGC----------C------ACAAGCTGGCATTCGGGGGCCAGGGCCGG---GC-AGGGG---ACTTCCCTCAAGSizeHit CountTotal NormTotal
No Reads
droKik1
TGTGTGTGT------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-------TGTGT-GTGTGTGT----GTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTGTGT-------GT------------GT----GTGTGTGTGTGTGA--------GTATATGT--ATATTTGT--------G----AGTGTGT---G--------------ACA------------ACTGCAATT-GGAGTTTC----------------------------------------------------------------------------------------------------GGT-------------------TTSizeHit CountTotal NormTotal
No Reads
droFic1
AGGACACTA---------------------TTGGGATTAAGTCGACGGCGGCAGCAG-TACACTGTGTGTTT-----------------------------------------------------------------------------------------------TTTATA-----------------TGCGT-ATA--------------------------------------------------------------------------------------------------------------------------CGATTG-TG-TCTGTGT------------------CTGCATGTATG------CTTGTGTGCG----------TGTG--------TG-TGT------------AT----GTGAG------TGGGAT--G--CTGTGAGT-------------------------------------G-----------------------------------TATTTTGTATTATTTTGTTTTTGCCTTTTGC-------CATTTTGTACATAA--ATCACC----------A----------GCAGCGAAATG-A---------------GA-CTGAG---GCTGAGAACGAASizeHit CountTotal NormTotal
No Reads
droEle1
TTTACGTTT------CGTATTCATCG-TTTTCCTGCTCAAGTGGACCCATGCACAAG-GTAAGCTGGACTAC-AAAAAATAGA-----ATAT--------------------------------------------------------------------------------A-------------------------------------------TATATA-----------------AAAAAACCCATCCTGGTCATGGATTTC--------------CTTCCTTCCTTTCTGG--------------------GTG-----------------------------------------------------------------------------------------------------------------------------------------------------T--------T----TGAG---TTTGCCTG-GCATTTTCTCTG-------------------------------------------------------------------TTTGTGC--AGCTGC----------C------ACAAAAAAGGGGGTG-T---------------AC-TCGGG---GTGCAATTGAAGSizeHit CountTotal NormTotal
No Reads
droRho1
ATGGT-----------------------TTCTCTGTTGGCC------ACAACAGGA---------------------------------------------------------------TAT-----------------------------------------------------------------------------------------------ATCAA-----------------AACAATGCCATGTCCTTCCTTAATTTT--------------CATTTTCCCCCAGTGC--------------------GTGTGCGA-----G-TGTGTGT------------------GAGTGTATGTGAGTGTGTG------TGAGTG------TGTG--------TC-TGA------------GTGTGTG----------TG------A--GTGTGTGTCTGAGT--------------------G---T------G-----------------------------------GGGCTTGCGGTTTGTTG-------------------------------TTGC--A---------------------------------------------------------------------------GCSizeHit CountTotal NormTotal
No Reads
droBia1
TGTGTGTGT------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-------TGTGT-GTGTGTGT----GTGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TGTGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------TGTGTGTGTGT--GTGTGTGT--------G----TGTGTGT---G--TGTGC-------------------------------------------GT-------------ACCGCTTGACAT-------TCAATGC--AATTTT-----------GCCTCT-------G--------------CTTATTTTCA-----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACGTAT-ACGTAATATAC-CTTAACG-TTTGA----------------------------------------------------------------------------------------------------------------------TTGTT--TG------TGGGG-------------ATCAGTATGTGT-GTGTGTGTG----TGTG-------TG-----------------TGT---------------------------------------------------------------------------------------GT-----GT------------------GTGTGTGTGTG------TGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------GT------------GT--------------------------GTGTGTGT--GTGT--------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGSizeHit CountTotal NormTotal
No Reads
droEug1
CTTGCCACA------G--------------------------------------CA--------------------------------------------------------------------------------------------------ATGTC-------CTGTGTT------TGTG-------TGAGT-TTATGTTT----GCTTC---TGGTTATGCCCCACAGTTGTAACCGT---------------------------------------------------------------------------------------GT---------------------------GTGTGTA--------TG------------AGTGTGTGTGTGTGTGTGTG-TGT------------TGGTATG----------GGA--------ATATATAT--------------------------A---TGTATATGCGGATT----CCA-------------------------------ATCA-------------A------------------TA-TCGT--AGACGC----------AGTCGCCGCTGGT-----------------------------GGCCG---CTTTTGCCCATTSizeHit CountTotal NormTotal
No Reads
dm3
CTTGTATCT------CGAATTCCTGG-CTGCCCTGTTTGAATTGCCATCGACAGGTG-CCCATTGCATTCA-----------------------TTGCACAGCTTTCCGTAAAGCA--GTCATTGTCCTGAATGTGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATGG-CG-TGTGTGT------------------GTGTGTGTGTG------TGTGTGTGTG----------TATG--------CG-TGT------------CT----GTGTG------TGGGCA--G--GATT------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................GCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATC..................................................................................................................................................................................................................................................................................................................................................181100.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002673000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................T-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATC..................................................................................................................................................................................................................................................................................................................................................16367.332020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018184000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATC..................................................................................................................................................................................................................................................................................................................................................17241.508300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000974000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAAT...................................................................................................................................................................................................................................................................................................................................................1613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAAT...................................................................................................................................................................................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATG..................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
.........................................................................................................................................T-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAAT...................................................................................................................................................................................................................................................................................................................................................1513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATG..................................................................................................................................................................................................................................................................................................................................................1511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TG-CCCATTGCATTCA-----------------------TTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAAT...................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GTGTAATGG-CG-TGTGTGT------------------GTGTGTGTGTG------TGTGTG.............................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATGG-C...............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................ATGTGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAAC...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................TGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAA....................................................................................................................................................................................................................................................................................................................................................1730.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAAA...................................................................................................................................................................................................................................................................................................................................................1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TGT------------------GTGTGTGTGTG------TGTGTGT............................................................................................................................................................................................................................................................................................21200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000007000000000000000000000000000000000
......................................................................................................................................TGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATA..................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................GCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATT..................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TGTG------TGTGTGTGTG----------TATG--------CG-T...............................................................................................................................................................................................................................................................2190.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TG------TGTGTGTGTG----------TATG--------CG-TGT------------.................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATTA-................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................GCT-----------------------------------------A-----------AGG---A----------------------------------------------------------------------------------------------------------------------GTGTGTAATA..................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTG------TGTGTGTGTG----------T..............................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TGTGTGT------------------GTGTGTGTGTG------TGTGT..............................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGTGTG------TGTGTGTGTG----------TATG--------...................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
.......................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG------TGTGTGTGTG----------T..............................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTG------TGTGTGTGTG----------TA.............................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................G-TGTGTGT------------------GTGTGTGTGTG------TGTGTG.............................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TG------TGTGTGTGTG----------TATG--------CG-T...............................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................G------TGTGTGTGTG----------TATG--------CG-T...............................................................................................................................................................................................................................................................18130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GG-CG-TGTGTGT------------------GTGTGTGTGT..........................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................TG------TGTGTGTGTG----------TATG--------CG-................................................................................................................................................................................................................................................................18180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
droSim2
TGTCTGTGT------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------------TGCCAG-TG-TGTGTGT------------------GTGTGTGTGTG------TGTGTGTGTGTGTGTGTGTCTAAGTGTGT-------GT------------GT--------------------------GTGTGTGT--GTAT--------------------T---T------CAGC-------------------------------------------CA-------------ACAAATTATC---------TCAATTT--AGCATA-----------ATATAT-------A--------------CTGAACTGCA-----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................G-TG-TGTGTGT------------------GTGTGTGTGTG------TGTG...............................................................................................................................................................................................................................................................................................25200.05100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGTGT-------GT------------GT--------------------------GTGTGTGT--...........................................................................................................................................................................................................21200.05100000000001000000
droSec2
CACACG---------CACACAATCAGAGCTTTCTTT------------------------------------------------------------------------------------------------------------------TGGTG--TTTCTTTGTGTGT-------------GTGTGTGTGTGT-GTGTGTGTG----TGTG---TGTGTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TATGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------TGTGTGTGTGT--GTGTGTGTGTATCTATGTATATGTGTCT---G--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTGC-GCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------........................................................................................................................................................................................................................27200.1020200
...........................................................................................................................................................................................................................GTG-----------------TGT---------------------------------------------------------------------------------------GT---------------------------GTGT--------GTGTG------------TATGTGT..............................................................................................................................................................................................................................................................................24170.0610100
.........................................................................................................................................................................T-------------GTGTGTGTGTGT-GTGTGTGTG----TGTG---................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100
...................................................................................................................................................................................................................................................................................................................................................................................................TATGTGTGTGTG------T-GTGT------------GT----GTGTGTGTG..................................................................................................................................................................................................................................28200.0510100
.......................................................................................................................................................................TGT-------------GTGTGTGTGTGT-GTGTGTGTG----TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100
......................................................................................................................................................................................................................................................................................................................................................................................G------------TATGTGTGTGTG------T-GTGT------------G................................................................................................................................................................................................................................................19200.0510001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GT----GTGTGTGTGTG--------TGTGTG..................................................................................................................................................................................................................19200.0510001
droYak3
CCCCCTTTC------C--------------------------------------------------------------------------------------------------------------------------------------CAGTG--TG------TGTGTATT-----------------TGTGT-GTGTGTGTG----TGTG---TGTGTG-----------------TGC---------------------------------------------------------------------------------------AT---------------------------GTGT--------GTGTT------------TGTGTGTGTGTG------T-GTGT------------GT----GTGTGTGTGTG--------CGTGTGTGTGC--GTGCGTGT---------------------GTGCTT--------------------------------------------------------------GCTCC-------CATTTTGTTTGGACACGGAAATGGTTAACAGCAGCAACG-------G--------------AT-------------------GTTGTGTAAATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................TT-----------------TGTGT-GTGTGTGTG----TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15303000000000
droEre2
TTTTGAATT------CATTTTATTAAATTTTTGTACTAATATGTATGTATGTATGTATGTATGT--ATGTAT----GTATGTATGT--ATGT--------------------------------------------------------------------------------A-------------------------------------------TGTATG-----------------TAT--------------------------------------------------------------------------------------------------------------------------------GTATG------------TATGTATGTATG------T-ATGTATGTATGTATGTAT----G--------------------TATGTATGT--ATGTATGTATGTATGTAT-----------------G-----TATGTATGTATGTATGTATG------TATGTA------------------------TGTAT-------GT-------------------------------------------------ATG-T---------------AT-TTATG---TATGTATTTATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAT-------GT-------------------------------------------------ATG-T---------------AT-TTATG---............18200.0510000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------TATGTA------------------------TGTAT-------GT-------------------------------------------------ATG-T---------------AT-T...................22200.0511000000

Generated: 05/16/2015 at 09:23 PM