ID:

dvi_106

 Coordinate:

scaffold_12855:2693707-2693761 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.6 -45.7 -45.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAACAGCAATTACCATTGCATTCGCAGTCGCTGTCGCTGTCGCAGTCGCAGCTGCAGTTGACGTCGACAGCGCTTGCGGCGCTGCCCGTTGGCTGCCAGCTGCCGTCTGCTTTCAGCTGCAACGGCCAACGTCGTCAGTCGCCAGTCGTCAGTT

***********************************.((((..((((.(((((((((((((((((....(((((((...)))))))..))))))))).)))))).)).))))...)))).************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060672

9x160_females_carcasses_total

 M027

male body		 SRR2096055

Ovary_Min_43		 SRR2096060

Ovary_Min_193		 M047

female body

 SRR2096056

Ovary_Min_46		 SRR060665

9_females_carcasses_total

 SRR060664

9_males_carcasses_total

 M028

head

 SRR2096059

Ovary_Min_164		 SRR2096058

Ovary_Min_98		 SRR060671

9x160_males_carcasses_total

 V053

head

 SRR2096057

Ovary_Min_50		 V116

male body		 SRR060655

9x160_testes_total

 SRR060675

140x9_ovaries_total

 SRR060679

140x9_testes_total

 SRR060681

Argx9_testes_total

 SRR060667

160_females_carcasses_total

 M061

embryo

 SRR060656

9x160_ovaries_total

 SRR060668

160x9_males_carcasses_total

 SRR060673

9_ovaries_total

 SRR060676

9xArg_ovaries_total

 SRR060689

160x9_testes_total

 SRR060657

140_testes_total

 SRR060654

160x9_ovaries_total

 SRR060669

160x9_females_carcasses_total

 SRR060670

9_testes_total

 SRR060683

160_testes_total

 SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		 V047

embryo

 SRR060688

160_ovaries_total
..................................................AGCTGCAGTTGACGTCGACAGC................................................................................... 22 0 1 51.00 51 3 10 9 8 0 6 1 1 4 2 2 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGC................................................... 22 0 1 34.00 34 2 3 6 3 0 2 4 3 1 2 1 0 1 1 1 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAGCGC................................................................................. 24 0 1 29.00 29 9 1 5 2 1 3 0 0 1 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAGCG.................................................................................. 23 0 1 21.00 21 7 1 0 1 0 1 1 0 1 2 1 0 0 0 0 3 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCT..................................................... 20 0 1 18.00 18 3 1 1 0 4 0 1 2 1 1 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTG.................................................... 21 0 1 11.00 11 2 3 1 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGA................................................... 22 1 1 8.00 8 1 1 0 0 1 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAG.................................................................................... 21 0 1 8.00 8 1 3 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCTGCCCGTTGGCTGCCAGCTGC................................................... 23 0 1 7.00 7 0 0 0 2 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGT................................................... 22 1 1 7.00 7 2 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCTGCCCGTTGGCTGCCAGCTGT................................................... 23 1 1 6.00 6 1 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACA..................................................................................... 20 0 1 6.00 6 1 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGCT.................................................. 23 1 1 4.00 4 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CCCGTTGGCTGCCAGCTGCCG................................................. 21 0 1 4.00 4 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CCCGTTGGCTGCCAGCTG.................................................... 18 0 1 4.00 4 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GCTGCAGTTGACGTCGACAGCGC................................................................................. 23 0 1 3.00 3 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................CTGCAGTTGACGTCGACAGCGC................................................................................. 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGAC...................................................................................... 19 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GGCCAACGTCGTCAGTCGC............ 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCCGCT..................................................... 20 1 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GTGCAGTTGACGTCGACAGCGC................................................................................. 22 1 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GCTGCAGTTGACGTCGACAGC................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GCGCTGCCCGTTGGCTGCCAGCTGCC.................................................. 26 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CCCGTTGGCTGCCAGCTGCCGT................................................ 22 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAGA................................................................................... 22 1 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGTT.................................................. 23 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GCGCTGCCCGTTGGCTGC.......................................................... 18 0 2 1.50 3 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CGCAGTCGCAGCTGCAGTTGACGTCGAC...................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGTTGACGTCGACAGCGCT................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAAC................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AACGGCCAACGTCGTCAGTCGCCAGTC....... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTTCAGCTGCAACGGCCAACGTCGTCA................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCCGTCTGCTTTCAGCTGC.................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGCAGCTGCAGTTGACGTCGACAGCGC................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GCTGCAGTTGACGTCGACAGCGCT................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCTGCCCGTTGGCTGCCAGCTGG................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTCCCCGTTGGCTGCCAGCTG.................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGCC.................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAGCGCT................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGCCCGTTGGCTGCCAGCTGCCGTCT.............................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGAA.................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GTCGCAGCTGCAGTTGACGTCGACA..................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAACGC................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGC...................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CGCAGTCGCAGCTGCAGTTGACGT.......................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCTGCCCGTTGGCTGCCAGCTGCT.................................................. 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGCTT................................................. 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGCCCGTTGGCTGCCAGCT..................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GATGCCCGTTGGCTGCCAGCTGC................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CCGTTGGCTGCCAGCTGCCGT................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GCTGCAGTTGACGTCGACAGCG.................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTGCCCGTTGGCTGCCAGCTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCGCAGCTGCAGTTGACGTCGAC...................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TGCGGCGCTGCCCGTTGGCTGC.......................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGCCCGTTGGCTGCCAGCTGT................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGGCGTCGACAG.................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAGCC.................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGGCCGTTGGCTGCCAGCTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTGCA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGTTGCCAGCT..................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCACGTTGGCTGCCATCTGC................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGCTGCAGTTGACGTCGACAGCG.................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTCCCCGTTGGCTGCCAGCTGC................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCGCAGCTGCAGTTGACGTC......................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACGGCCAACGTCGTCAGTCGCC........... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGCAGCTGCAGTTGACGTCGACAG.................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGCTT.................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGCTGCAGTTGACGTCGACAGGGC................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCCGCTG.................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AACGTCGTCAGTCGCCAGTCGTCAGT. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCACCTGC................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................CTGCCCGTTGGCTGCCAGTT..................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GCCCGTTGGCTGCCAGCTGCCG................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGCCCGTTGGCTGCCAGCTGC................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GGCAGCTGCAGTTGACGTCGACC..................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGCCCGTTGGCTGCCAGCG..................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTGTCCGTTGGCTGCCAGCT..................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GTCGCAGTCGCAGCTGCA.................................................................................................. 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGTCGCCAGTCGTCGGTT 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTTCCCGTTGGCTGCCAGCTGA................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GAGCTTGCGGAGCTGCCCG.................................................................. 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GCTGAAACGGGAAACGTCGT................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................CTGCCCGTTGGCTGCCAAA...................................................... 19 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCGCAGTCGCTGTCGCTGTC................................................................................................................. 20 0 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTTGCAACGGCCAACGGGGT................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................GCTGTCGCTGTCGCAGTC........................................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCGCAGTCGCTGTCGCTG................................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCGCAGCCGCTGTCGCTG................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGCTGTCGCTGTCGCAGT............................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTTGTCGTTAATGGTAACGTAAGCGTCAGCGACAGCGACAGCGTCAGCGTCGACGTCAACTGCAGCTGTCGCGAACGCCGCGACGGGCAACCGACGGTCGACGGCAGACGAAAGTCGACGTTGCCGGTTGCAGCAGTCAGCGGTCAGCAGTCAA

************************************.((((..((((.(((((((((((((((((....(((((((...)))))))..))))))))).)))))).)).))))...)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667

160_females_carcasses_total

 V116

male body		 SRR2096060

Ovary_Min_193		 SRR060679

140x9_testes_total

 SRR1106729

mixed whole adult body

 M047

female body
.......................................................................TCGAACGCCGCGACGGGTAAC............................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...............................................GCGTCGACGTCCACTGCAGCT....................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................CGTCAGCGTCGACGTCAA............................................................................................... 18 0 2 0.50 1 0 0 1 0 0 0
.................ACGAAAGCGTCAGGGACA........................................................................................................................ 18 2 12 0.08 1 0 0 0 1 0 0
............................................................................................................................CCGGTTCCAGCAGTCAC.............. 17 2 17 0.06 1 0 0 0 0 1 0
..............................CGACAGCGACAGCGTCAGCG......................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droVir3 scaffold_12855:2693657-2693811 - dvi_106 confident ACAAC-----AGCAATT---ACCATTGCA--------------T---------------TCGCAGTCGCTGTCG----CTGTCGCAGTCGCAGCTGCAGTTGACGTCG-ACAGC------------G-----CTT---G------------------------------------------CGGC------------GCTGCCCGT--TGGCTGCCA---GC--------T------------------------GCC------GTCTGCT-------------------------------------------------------------------------------TTCAGCTGCAAC--------------------------GGCCAACGTCGTCAG-------------------------------------------------------------------------------------------TCGCC------AGTCGTCAGTT-
droMoj3 scaffold_6540:11894821-11894955 - dmo_261 confident ACAAC-----AAA-ACG---GC-ATTGCAGTCA----------C-----------------GCTGTCGCTGTCGCTAC----C------GCAGCTGCAGTCAGCGC---------------------------TG---G------------------------------------------CAGC------------GCTGCCTGTGCTGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------TTCAGCTGCAAC--------------------------GGCCAACGT-------------------------------------------------------------------------------------------------CGGCA------G-TCGTCAGTT-
droGri2 scaffold_14624:2256890-2257043 + dgr_472 ACTACA----AGCAGTC---GCAGCT---------------------------------------------------------------------GCAGTTGACGTCG-GCAGCGCTGTTTCTGTTGCGTTGG------------------------------------------------------------------------------CTGACAGCT--GCTGCTGCTGC------------------------------TAGCTG--CT------------TGCTGCTTGCCGCTAGCTGCTTGGGCTGC-----------------------------------ATTCAGCTGCAAC--------------------------AGCCAACG--GGCAA-------------------------------------------------------------------------------------------CGTCA------G-TCGTCAGTT-
droWil2 scf2_1100000004902:11175893-11176028 - dwi_5427 AAA-C-----TGC-ACA---GTTGCAGT---CA----------T--------GC---------TG---CTGCCTCTGC----T------------GCAGTTGACGTCG-ACTTC------------G-----GTT---G------------------------------------------CTGCT------------------------------------GCTGGTGCTGG---------------------------TGCTGC-----T--------------------------------------------------------------------------------------------------------------------------------------------GCTGCAGTTGCTGTTGG------------CGTTTTGGCATTTGG---TTT---GGT-------------------------CTGGCC------A-CAGTCAGTG-
dp5 2:5026858-5026994 - dps_117 candidate-rescued CT-GC-----AGT---CGCTG---CT---------------------------------------------------------------------GCAGTCGACGCTG-GC---GTCGTCGCCGTCGCCTTCTCT---G------------------------------------------CCGCT------------------------------------GACGCTGCCGC------------------------------TGACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GGCTGCGGCCGCTGTCGG------------CT-------------------------------GCTT-------GCCTGCACCCGGTC------A-GCGTCAGTG-
droPer2 scaffold_19:732320-732456 - dpe_2527 CT-GC-----AGT---CGCTG---CT---------------------------------------------------------------------GCAGTCGACGCTG-GC---GTCGTCGCCGTCGCCTTCTCT---G------------------------------------------CCGCT------------------------------------GCCGCTGACGC------------------------------TGACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GGCTGCGGCCGCTGTCGG------------CT-------------------------------GCTT-------GCCTGCACCCGGTC------A-GCGTCAGTG-
droAna3 scaffold_13340:6482849-6482998 + dan_4066 TCTGC-----TGCG-TC---GCTACTGCA--------------G---------------TCGTCGACGACGTCG----ATGTGGCTGCCGCTG-------------------------CCACCGCTGCTGT---T---G------------------------------------------CCA---------------------------------------------------------------CTGCTGCTGCTGCTGCTGCTGC--TG------------CAGAGCCTT----------------------------------------------------------CTGCTGCTTT-------------------------------------------------------GGTTGCTGTTGG------------CC-------------------------------AATT-------GC----CGTTGGCC------A-GCGTCAGTG-
droBip1 scf7180000396708:2366185-2366313 - ACAAACTGCAGTCGGCT---GCGT---------------------------CGCT----------------------------------------GCAGTCGACGACG-CCGAC------------G-----TCT---G------------------------------------------CTGCT------------------------------------ACGGGTACTGC------------------------------TGCCGC--TG------------CAGCGCCTT----------------------------------------------------------CTGCTGCTTT-------------------------------------------------------GGTTGCTGTTGG------------CC-------------------------------AATT-------GC----CGTTGGCC------A-GCGTCAGTG-
droKik1 scf7180000302621:77408-77586 + GCAGC-----AGCAGCA---GCAGTAGCA--------------G---------------CGGCAGCAACAATA-----ACACACCCAACG------------------------------------------G------------------------------------------------------------------------------TGC--------GCAGCAGCAG------CATTTGCAGCAGCAGCAGCA---------------GCA---ACAACGCGTTGCTAGCAGCAACCAGCAACAGTTGCAGCAGCAGCA------------------------------------GC--------------------------A-----------------------------------GCATGATAATGGACCAACGTCCCATCA-----------------------------------T----TTGCATCA------A-TCATCAGTC-
droFic1 scf7180000454050:472623-472749 - ACAAC-----AACAGTC---GTAGTCGCA--------------G---------------TCGCAGCCGCAGTCG----CAATCGCAGTCGCA-------------------------------------GTCGCA---G------------------------------------------CAACA------------------------------------GCAGCAGCAGCAGTT------------GCAGTAGCAGCAGCAG---------------------------------------------------------------------------------------CAGCAGCAAC--------------------------G-CTAGCGTCGGCAGCG------------------------------------------------------------------------------------------------------ACGCCAG---
droEle1 scf7180000491011:47774-47916 + TGTCGT----CGCAATC---GCAATCG-----------------------------------------CTGTTG-----------------------------------CA---GTTGCAGTTGCAGTTTCAGTT---G------------------------------------------CAGCTTAAGTTGCAGTCATGGCCAT--GGGCGGCCT---AT--------T------------------------GCC------AATTGCT-------------------------------------------------------------------------------T----------------------------------------------------------------------ATT-------------------------------------------GCCAACTGTAGATTTTCAAACCGTAAGTCGTA------AGTCGTAAGT--
droRho1 scf7180000780091:224570-224723 + ACAGC-----AGCAACA---ACAGCAGCA--------------T--------GC---------CG---CCGTAG-----------------------------------CC---GCCGCAGCTGCCGCTTCGC----------------------------------------------------A------------------------------------TCCG------------------------------------------------CATATGCATGCCGCCC-----------ATGCCCACGCCCACGCCCACGCC-----CTTG------------------------GCCCCCAGTTGGCGCAACTCCAGGCGGTCGCT----GTGCCGT----------------------------------------------------------------------------------------------CAGCG------G-CCAACAGT--
droBia1 scf7180000302126:3414190-3414310 - GCGGC-----AGGCACA---GCAACAGCA-------ACA----GCAACAAGCGCT----------------------------------------GCAGT-------------------------CGCAGTCGCA---G------------------------------------------CAGCA------------------------------------GCTGCAGTAGCAG------------CAGCAGCAGCAGCAGCAG---------------------------------------------------------------------------------------CAGCAGCAAC--------------------------G-CTAGCGTCGGCAGCG------------------------------------------------------------------------------------------------------ACGCCAG---
droTak1 scf7180000415238:250560-250728 + ACAAC-----TTGTGGC---ACAAATCTC---CA--GTAGCCTA-AGCCA--GCT------------GCAGCCGCAGT----T------------GCAGTTGCAGTTCGCCAGT------------G-----GCT---C------------------------------------------CAGCT--------------------------------------TC------------------------------------------------CTGCAACAGGGCCCCA-----------CTCC-CTCGCCATCC------------------------------------CAGCAGCAACATGTTGGTC-------------------------CTGTCAGCA-------------GCAGCAGCCTC------------GT-------------------------------AACT-------GC----------CA------A-TCTCCAG---
droEug1 scf7180000409759:556627-556786 - ACAAC-----AGCCACC---TCAATTGCTGCCC-ACACA----TCAGTTTGCA---------------------------CACTTGTCTTCC-------------------------------------TTTGTGACACCAACAGCAGCGGCAGCAGCAGCGGCGGCGGCGCACTATC---CCC--------------------CAGCT-ACTG-CT---GC--------T------------------------GCC------GCTTACT---------------------------------------TTG-CA------------------------------------CAGCAGCAAC--------------------------A-------CCATCAGCA------------------------------------------------------------------------------------------------------TCATCAG---
dm3 chr3R:23875772-23875913 + GCAGC-----AGCAGCA---ACAGCAGCA--------------T---------------CCCCAGTCGCAGTCG-----------------------------------------C---------CGCACCAGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGCAGGCCGCCG-----------CAGCAGCCGCCGCTGCAGCCGCA-----GCAG------------------------CC--C--------------------------A-------CCATCAGCAGCAGCAGGCGGTGGC---------------------------------------------------------------------------CGCA------G-CAGTCTGT--
droSim2 3r:15128626-15128728 - CGCAG-------------------CT---------------------------------------------------------------------GCAGTCGACGTCG-AC---GCAGTGTTCGCTGCTGCCACC---G---------------------------------------CTGCTGCACTCG---------------------CCGACGTCC--GTTTCTGT-----------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------TGG------------CC-------------------------------CATT-------GC----CGTTGGCC------A-GCTTCAGTG-
droSec2 scaffold_34:421870-422013 + ACAAC-----AACAACA---ACAGGTGCA--------------G---------------C--------------------------------------------------------------------------A---C------------------------------------------CAACA------------------------------------GCAGCAGCAAAAGCTTCAGTTGCAGCAACAACAGCA---------------GCA---TCAACACAACTCG-------------------------------A------------------------------------AC--------------------------A-----------------------------------ATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGC--------GCCT-------G--------ACCTC------A----GCTGT--
droYak3 X:12681700-12681863 - ACACC-----AGAAACT---ACAACATTG--------------A-----------------------------------------------------------AATCA------------------------------------------------------------------------------------------------------------------GCAGCAGTAGCACTT------------GCAACAGCAGCAGCAGC-----A-GCA---ACAACACTGCA-G-------------------------------GGCAAC---AAGAATGTGTGGGCTTCATT--------------------------------------------------GCAGCA---G------GCAACT-------------------------------------------GCCAACTGGCGACGTGCAACGTGCAACATGCAATGGGCAATGGGCAGTGA
droEre2 scaffold_4690:4615439-4615571 + GCAGC-----AGCAGCC---ACAAGAACA--------------AAAGCAAGCGCTGCAGTCGCAGTCGCA-----------------------------------------------------------GTCGCA---G------------------------------------------CAGCA------------------------------------GCAGCAGCAGCAGCTGCAGTAGCAGCAGCAGCAGCA---GCAG---------------------------------------------------------------------------------------CAGCAGCAAC--------------------------G-CTAGCGT-------------------------------------------------------------------------------------------------CGGCA------G-CAGCATGTC-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACAAC-----AGCAATT---ACCATTGCA--------------T---------------TCGCAGTCGCTGTCG----CTGTCGCAGTCGCAGCTGCAGTTGACGTCG-ACAGC------------G-----CTT---G------------------------------------------CGGC------------GCTGCCCGT--TGGCTGCCA---GC--------T------------------------GCC------GTCTGCT-------------------------------------------------------------------------------TTCAGCTGCAAC--------------------------GGCCAACGTCGTCAG-------------------------------------------------------------------------------------------TCGCC------AGTCGTCAGTT-SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................AGCTGCAGTTGACGTCG-ACAGC------------.......................................................................................................................................................................................................................................................................................................................................................................................................22151.005110400100000000011001000300000000000000000000000000000000000002100000096022800000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GC....................................................................................................................................................................................................................................................................22134.00343100000100000034000000200010020000000000000000000000000000001100000062112300000
...........................................................................................AGCTGCAGTTGACGTCG-ACAGC------------G-----C................................................................................................................................................................................................................................................................................................................................................................................................24129.00291110000000000000000010900000000000000001000000000000000000002000000053111200000
...........................................................................................AGCTGCAGTTGACGTCG-ACAGC------------G-----.................................................................................................................................................................................................................................................................................................................................................................................................23121.00211100032000000001000000710000000000000000000000000000000000000000000001012100000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------......................................................................................................................................................................................................................................................................20118.00181140000000000021000004300000000000000000000000000000000000000000000010001000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------G.....................................................................................................................................................................................................................................................................21111.00113010000000000010000001200000000000000000000000000000000000000000000011001000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GA....................................................................................................................................................................................................................................................................2218.0081010000000000023000000100000000000000000000000000000000000000000000000000000000
...........................................................................................AGCTGCAGTTGACGTCG-ACAG....................................................................................................................................................................................................................................................................................................................................................................................................................2118.0083110000000000000000000100000010000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................GCTGCCCGT--TGGCTGCCA---GC--------T------------------------GC....................................................................................................................................................................................................................................................................2317.0070040000000000000000000000000000000000000000000000000000000000000000001000200000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GT....................................................................................................................................................................................................................................................................2217.0070000000000000001001000200100000000000000000000000000000000000100000000000100000
.....................................................................................................................................................................................................GCTGCCCGT--TGGCTGCCA---GC--------T------------------------GT....................................................................................................................................................................................................................................................................2316.0060000000000000030000001100000000100000000000000000000000000000000000000000000000
...........................................................................................AGCTGCAGTTGACGTCG-ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................2016.0061000000000000001000000100000000000000000000000000000000000000100000000101000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GCT------.............................................................................................................................................................................................................................................................2314.0041000000000000011000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................CCCGT--TGGCTGCCA---GC--------T------------------------GCC------G............................................................................................................................................................................................................................................................2114.0041100000000000001000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CCCGT--TGGCTGCCA---GC--------T------------------------G.....................................................................................................................................................................................................................................................................1814.0041000000000000000000000000000000000000000000000000000000000000000000030000000000
............................................................................................GCTGCAGTTGACGTCG-ACAGC------------G-----C................................................................................................................................................................................................................................................................................................................................................................................................2313.0030010000000000000000000100000000000000000000000000000000000000000000001000000000
.............................................................................................CTGCAGTTGACGTCG-ACAGC------------G-----C................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000020000000000
...........................................................................................AGCTGCAGTTGACGTCG-AC......................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACGTCGTCAG-------------------------------------------------------------------------------------------TCGC...................1912.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
............................................................................................GCTGCAGTTGACGTCG-ACAGC------------.......................................................................................................................................................................................................................................................................................................................................................................................................2112.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GC------------GCTGCCCGT--TGGCTGCCA---GC--------T------------------------GCC------.............................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000001000100000
.........................................................................................................................................................................................................CCCGT--TGGCTGCCA---GC--------T------------------------GCC------GT...........................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000001000000000000000000000000000000000100000
...........................................................................................AGCTGCAGTTGACGTCG-ACAGA------------.......................................................................................................................................................................................................................................................................................................................................................................................................2212.0020010000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GTT------.............................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
.......................................................................................................................................................................................GC------------GCTGCCCGT--TGGCTGC..............................................................................................................................................................................................................................................................................................................1821.5030000000000000000000000000000000000000000000000000000000000000000000000030000000
..................................................................................CGCAGTCGCAGCTGCAGTTGACGTCG-AC......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................AGTTGACGTCG-ACAGC------------G-----CT...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................AAC--------------------------GGCCAACGTCGTCAG-------------------------------------------------------------------------------------------TCGCC------AGTC........2711.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------TTCAGCTGCAAC--------------------------GGCCAACGTCGTCA...................................................................................................................2711.0010000000000000000000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................T------------------------GCC------GTCTGCT-------------------------------------------------------------------------------TTCAGCTGC..............................................................................................................................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................................................................CGCAGCTGCAGTTGACGTCG-ACAGC------------G-----C................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................GCTGCAGTTGACGTCG-ACAGC------------G-----CT...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GCTGCCCGT--TGGCTGCCA---GC--------T------------------------GG....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GCC------.............................................................................................................................................................................................................................................................2311.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AGCTGCAGTTGACGTCG-ACAGC------------G-----CT...............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................TGCCCGT--TGGCTGCCA---GC--------T------------------------GCC------GTCT.........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GAA------.............................................................................................................................................................................................................................................................2311.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
......................................................................................GTCGCAGCTGCAGTTGACGTCG-ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------...............................................................................................................................................................................................................................................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CGCAGTCGCAGCTGCAGTTGACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GCTGCCCGT--TGGCTGCCA---GC--------T------------------------GCT------.............................................................................................................................................................................................................................................................2411.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GCT------T............................................................................................................................................................................................................................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGCCCGT--TGGCTGCCA---GC--------T------------------------......................................................................................................................................................................................................................................................................1911.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CCGT--TGGCTGCCA---GC--------T------------------------GCC------GT...........................................................................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GCTGCAGTTGACGTCG-ACAGC------------G-----.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCGCAGCTGCAGTTGACGTCG-AC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................T---G------------------------------------------CGGC------------GCTGCCCGT--TGGCTGC..............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................TGCCCGT--TGGCTGCCA---GC--------T------------------------GT....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................AGCTGCAGTTGACGTCG-ACAGC------------C-----.................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------GCA------.............................................................................................................................................................................................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................TCGCAGCTGCAGTTGACGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AC--------------------------GGCCAACGTCGTCAG-------------------------------------------------------------------------------------------TCGCC------............2211.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
........................................................................................CGCAGCTGCAGTTGACGTCG-ACAG....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---GC--------T------------------------T.....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGTCAG-------------------------------------------------------------------------------------------TCGCC------AGTCGTCAGT..2611.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GCCCGT--TGGCTGCCA---GC--------T------------------------GCC------G............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................TGCCCGT--TGGCTGCCA---GC--------T------------------------GC....................................................................................................................................................................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGCCCGT--TGGCTGCCA---GC--------G------------------------......................................................................................................................................................................................................................................................................1920.5011000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................GTCGCAGTCGCAGCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................CTGCCCGT--TGGCTGCCA---AA--------...............................................................................................................................................................................................................................................................................................19100.1010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCGCAGTCGCTGTCG----CTGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................GCTGTCG----CTGTCGCAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................TCGCAGTCGCTGTCG----CTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................CGCTGTCG----CTGTCGCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000010000000000000000000000000000000000000000
droMoj3
ACAAC-----AAA-ACG---GC-ATTGCAGTCA----------C-----------------GCTGTCGCTGTCGCTAC----C------GCAGCTGCAGTCAGCGC---------------------------TG---G------------------------------------------CAGC------------GCTGCCTGTGCTGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------TTCAGCTGCAAC--------------------------GGCCAACGT-------------------------------------------------------------------------------------------------CGGCA------G-TCGTCAGTT-SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
........................................................................CGCTAC----C------GCAGCTGCAGTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................21117.00171700000
........................................................................CGCTAC----C------GCAGCTGCAGTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................20116.00161301101
........................................................................CGCTAC----C------GCAGCTGCAGTCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................22114.00141400000
................................................................................................................................................................................................................TGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------.......................................................................................................................................................................22110.00101000000
................................................................................................................................................................................................................TGGCTGCCA---GT--------T------------------------GCC------GTATG........................................................................................................................................................................................................................................................2019.009600201
................................................................................................................................................................................................................TGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------T......................................................................................................................................................................2318.008800000
................................................................................................................................................................................................................TGGCTGCCA---GT--------T------------------------GCC------GTATGC.......................................................................................................................................................................................................................................................2116.006501000
................................................................................................................................................................................................................TGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------TT.....................................................................................................................................................................2416.006600000
........................................................................CGCTAC----C------GCAGCTGCAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................1915.005400100
........................................................................CGCTAC----C------GCAGCTGCAGTCAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
........................................................................CGCTAC----C------GCAGCTGCAGTCAGCGC---------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
...............................................................................................................................................................................................................CTGGCTGCCA---GT--------T------------------------GCC------GTATGC.......................................................................................................................................................................................................................................................2212.002200000
................................................................................................................................................................................................................TGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------TA.....................................................................................................................................................................2412.002100100
...............................................................................................................................................................................................................CTGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------AA.....................................................................................................................................................................2511.001100000
.........................................................................GCTAC----C------GCAGCTGCAGTCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................GCTGCAAC--------------------------GGCCAACGT-------------------------------------------------------------------------------------------------CGGCA------G-TC........2511.001100000
................................................................................................................................................................................................................TGGCTGCCA---GT--------T------------------------GCC------GTAT.........................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................GGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------TA.....................................................................................................................................................................2311.001100000
........................................................................CGCTAC----C------GCAGCTGCAGTCAGCGC---------------------------TG---G------------------------------------------................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................................................................................TGTGCTGGCTGCCA---GT--------T------------------------GCC------G............................................................................................................................................................................................................................................................2111.001000100
........................................................................CGCTAC----C------GCAGCTGCAGTCAGCGC---------------------------TG---G------------------------------------------C...............................................................................................................................................................................................................................................................................................................................................2811.001100000
........................................................................CGCTAC----C------GCAGCTGCAGTCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................................................................TCGCTAC----C------GCAGCTGCAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...............................................................................................................................................................................................................CTGGCTGCCA---GT--------T------------------------GCC------GTATG........................................................................................................................................................................................................................................................2111.001000100
.................................................................................................................................................................................................................GGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------T......................................................................................................................................................................2211.001100000
...........................................................................................................................................................................................................TGTGCTGGCTGCCA---GT--------T------------------------GC....................................................................................................................................................................................................................................................................1911.001100000
...........................................................................TAC----C------GCAGCTGCAGTCAGCGC---------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................................................CTGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------TT.....................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................CTGGCTGCCA---GT--------T------------------------GCC------GTATGCT-------------------------------------------------------------------------------T......................................................................................................................................................................2411.001100000
........................................................................CGCTAC----C------GCAGCTGCAGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
droGri2
ACTACA----AGCAGTC---GCAGCT---------------------------------------------------------------------GCAGTTGACGTCG-GCAGCGCTGTTTCTGTTGCGTTGG------------------------------------------------------------------------------CTGACAGCT--GCTGCTGCTGC------------------------------TAGCTG--CT------------TGCTGCTTGCCGCTAGCTGCTTGGGCTGC-----------------------------------ATTCAGCTGCAAC--------------------------AGCCAACG--GGCAA-------------------------------------------------------------------------------------------CGTCA------G-TCGTCAGTT-SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................................TTGCGTTGG------------------------------------------------------------------------------CTGACAGCT--GCT....................................................................................................................................................................................................................................................................................................2112.00211
............................................................................................................................TTGCGTTGG------------------------------------------------------------------------------CTGACAGCT--GCTG...................................................................................................................................................................................................................................................................................................2211.00110
............................................................................................................................TTGCGTTGG------------------------------------------------------------------------------CTGACAGCT--GCTGC..................................................................................................................................................................................................................................................................................................2311.00110
...............................................................................................................................................................................................................................................................................................CTGCTTGCCGCTAGCTGCTTGG................................................................................................................................................................................................................2211.00110
droWil2
AAA-C-----TGC-ACA---GTTGCAGT---CA----------T--------GC---------TG---CTGCCTCTGC----T------------GCAGTTGACGTCG-ACTTC------------G-----GTT---G------------------------------------------CTGCT------------------------------------GCTGGTGCTGG---------------------------TGCTGC-----T--------------------------------------------------------------------------------------------------------------------------------------------GCTGCAGTTGCTGTTGG------------CGTTTTGGCATTTGG---TTT---GGT-------------------------CTGGCC------A-CAGTCAGTG-SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................AGTTGACGTCG-ACTTC------------G-----GT...............................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
........................................................................CTCTGC----T------------GCAGTTGACGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGG------------CGTTTTGGCATTTGG---TTT---G...................................................2411.00100100
..........................................................................................................CG-ACTTC------------G-----GTT---G------------------------------------------CTGCT------------------------------------GCT....................................................................................................................................................................................................................................................................................................2011.00100100
....................................................................................................TGACGTCG-ACTTC------------G-----GTT---G------------------------------------------CTGCT------------------------------------.......................................................................................................................................................................................................................................................................................................2311.00101000
dp5
CT-GC-----AGT---CGCTG---CT---------------------------------------------------------------------GCAGTCGACGCTG-GC---GTCGTCGCCGTCGCCTTCTCT---G------------------------------------------CCGCT------------------------------------GACGCTGCCGC------------------------------TGACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GGCTGCGGCCGCTGTCGG------------CT-------------------------------GCTT-------GCCTGCACCCGGTC------A-GCGTCAGTG-SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------G.........................................................................................................2118.0080302021000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------..........................................................................................................2013.0030100020000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGC...........................................................................................................................................................................................................................1913.0030101010000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCG............................................................................................................................................................................................................................1812.0020100001000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GGC.......................................................................................................2312.0020110000000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------T.........................................................................................................2112.0020000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGG------------CT-------------------------------GCTT-------GCCTGCACCCGGTC------A-..........2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCTGTCGG------------CT-------------------------------GCTT-------GC..............................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCCGCTGTCGG------------CT-------------------------------GCTT-------G...............................2211.0010100000000
...........................................................................................................................................................................................................................................................................GA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GGC.......................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GT........................................................................................................2211.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTCGG------------CT-------------------------------GCTT-------GCCTGCACCCG.....................2611.0010000100000
..........AGT---CGCTG---CT---------------------------------------------------------------------GCAGTCGACGCTG-GC---...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GG........................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGG------------CT-------------------------------GCTT-------GCCTGCAC........................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGG------------CT-------------------------------GCTT-------GCCTGCACCCGGTC------............2311.0010010000000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GGCTG.....................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................CGA--TG------------TGAGGCCAGCCGTA----------------------------------------------------------------------------------------------------------------T.........................................................................................................2050.2010100000000
droPer2
CT-GC-----AGT---CGCTG---CT---------------------------------------------------------------------GCAGTCGACGCTG-GC---GTCGTCGCCGTCGCCTTCTCT---G------------------------------------------CCGCT------------------------------------GCCGCTGACGC------------------------------TGACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GGCTGCGGCCGCTGTCGG------------CT-------------------------------GCTT-------GCCTGCACCCGGTC------A-GCGTCAGTG-SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................CGCCGTCGCCTTCTCT---G------------------------------------------CCGCT------------------------------------GCC....................................................................................................................................................................................................................................................................................................2512.002200000
.....................................................................................................................GTCGCCGTCGCCTTCTCT---G------------------------------------------CC..............................................................................................................................................................................................................................................................................................................................................2112.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGG------------CT-------------------------------GCTT-------GCCTGCACCC......................2111.001010000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGC...........................................................................................................................................................................................................................1911.001000001
...........................................................................................................................................................................................................................................................................GA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GT........................................................................................................2011.001000001
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------G.........................................................................................................2111.001000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------GCCTGCACCCGGTC------A-GCGTCA....2311.001000010
...................TG---CT---------------------------------------------------------------------GCAGTCGACGCTG-GC---...................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGCT----------------------------------------------------------------------------------------------------------------GG........................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCG............................................................................................................................................................................................................................1811.001000010
.........................................................................................................................................................................................................................................................................ACGA--TG------------TGAGGCCAGCCGT...........................................................................................................................................................................................................................1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------GCCTGCACCCGGTC------A-GCGTCA....2211.001010000
droAna3
TCTGC-----TGCG-TC---GCTACTGCA--------------G---------------TCGTCGACGACGTCG----ATGTGGCTGCCGCTG-------------------------CCACCGCTGCTGT---T---G------------------------------------------CCA---------------------------------------------------------------CTGCTGCTGCTGCTGCTGCTGC--TG------------CAGAGCCTT----------------------------------------------------------CTGCTGCTTT-------------------------------------------------------GGTTGCTGTTGG------------CC-------------------------------AATT-------GC----CGTTGGCC------A-GCGTCAGTG-SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................GACGACGTCG----ATGTGGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.................................................................................................................................................................................................................................................................................................GCCTT----------------------------------------------------------CTGCTGCTTT-------------------------------------------------------GGTTGCTGTTG.........................................................................................2611.001001000
...............................................................CGACGACGTCG----ATGTGGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.................................................................ACGACGTCG----ATGTGGCTGCCGCTG-------------------------CCA............................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................GT---T---G------------------------------------------CCA---------------------------------------------------------------CTGCTGCTGCTGC.................................................................................................................................................................................................................................................................2040.251010000
droBip1
ACAAACTGCAGTCGGCT---GCGT---------------------------CGCT----------------------------------------GCAGTCGACGACG-CCGAC------------G-----TCT---G------------------------------------------CTGCT------------------------------------ACGGGTACTGC------------------------------TGCCGC--TG------------CAGCGCCTT----------------------------------------------------------CTGCTGCTTT-------------------------------------------------------GGTTGCTGTTGG------------CC-------------------------------AATT-------GC----CGTTGGCC------A-GCGTCAGTG-SizeHit CountTotal NormTotal
No Reads
droKik1
GCAGC-----AGCAGCA---GCAGTAGCA--------------G---------------CGGCAGCAACAATA-----ACACACCCAACG------------------------------------------G------------------------------------------------------------------------------TGC--------GCAGCAGCAG------CATTTGCAGCAGCAGCAGCA---------------GCA---ACAACGCGTTGCTAGCAGCAACCAGCAACAGTTGCAGCAGCAGCA------------------------------------GC--------------------------A-----------------------------------GCATGATAATGGACCAACGTCCCATCA-----------------------------------T----TTGCATCA------A-TCATCAGTC-SizeHit CountTotal NormTotal
No Reads
droFic1
ACAAC-----AACAGTC---GTAGTCGCA--------------G---------------TCGCAGCCGCAGTCG----CAATCGCAGTCGCA-------------------------------------GTCGCA---G------------------------------------------CAACA------------------------------------GCAGCAGCAGCAGTT------------GCAGTAGCAGCAGCAG---------------------------------------------------------------------------------------CAGCAGCAAC--------------------------G-CTAGCGTCGGCAGCG------------------------------------------------------------------------------------------------------ACGCCAG---SizeHit CountTotal NormTotal
No Reads
droEle1
TGTCGT----CGCAATC---GCAATCG-----------------------------------------CTGTTG-----------------------------------CA---GTTGCAGTTGCAGTTTCAGTT---G------------------------------------------CAGCTTAAGTTGCAGTCATGGCCAT--GGGCGGCCT---AT--------T------------------------GCC------AATTGCT-------------------------------------------------------------------------------T----------------------------------------------------------------------ATT-------------------------------------------GCCAACTGTAGATTTTCAAACCGTAAGTCGTA------AGTCGTAAGT--SizeHit CountTotal NormTotal
No Reads
droRho1
ACAGC-----AGCAACA---ACAGCAGCA--------------T--------GC---------CG---CCGTAG-----------------------------------CC---GCCGCAGCTGCCGCTTCGC----------------------------------------------------A------------------------------------TCCG------------------------------------------------CATATGCATGCCGCCC-----------ATGCCCACGCCCACGCCCACGCC-----CTTG------------------------GCCCCCAGTTGGCGCAACTCCAGGCGGTCGCT----GTGCCGT----------------------------------------------------------------------------------------------CAGCG------G-CCAACAGT--SizeHit CountTotal NormTotal
No Reads
droBia1
GCGGC-----AGGCACA---GCAACAGCA-------ACA----GCAACAAGCGCT----------------------------------------GCAGT-------------------------CGCAGTCGCA---G------------------------------------------CAGCA------------------------------------GCTGCAGTAGCAG------------CAGCAGCAGCAGCAGCAG---------------------------------------------------------------------------------------CAGCAGCAAC--------------------------G-CTAGCGTCGGCAGCG------------------------------------------------------------------------------------------------------ACGCCAG---SizeHit CountTotal NormTotal
No Reads
droTak1
ACAAC-----TTGTGGC---ACAAATCTC---CA--GTAGCCTA-AGCCA--GCT------------GCAGCCGCAGT----T------------GCAGTTGCAGTTCGCCAGT------------G-----GCT---C------------------------------------------CAGCT--------------------------------------TC------------------------------------------------CTGCAACAGGGCCCCA-----------CTCC-CTCGCCATCC------------------------------------CAGCAGCAACATGTTGGTC-------------------------CTGTCAGCA-------------GCAGCAGCCTC------------GT-------------------------------AACT-------GC----------CA------A-TCTCCAG---SizeHit CountTotal NormTotal
No Reads
droEug1
ACAAC-----AGCCACC---TCAATTGCTGCCC-ACACA----TCAGTTTGCA---------------------------CACTTGTCTTCC-------------------------------------TTTGTGACACCAACAGCAGCGGCAGCAGCAGCGGCGGCGGCGCACTATC---CCC--------------------CAGCT-ACTG-CT---GC--------T------------------------GCC------GCTTACT---------------------------------------TTG-CA------------------------------------CAGCAGCAAC--------------------------A-------CCATCAGCA------------------------------------------------------------------------------------------------------TCATCAG---SizeHit CountTotal NormTotal
No Reads
dm3
GCAGC-----AGCAGCA---ACAGCAGCA--------------T---------------CCCCAGTCGCAGTCG-----------------------------------------C---------CGCACCAGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGCAGGCCGCCG-----------CAGCAGCCGCCGCTGCAGCCGCA-----GCAG------------------------CC--C--------------------------A-------CCATCAGCAGCAGCAGGCGGTGGC---------------------------------------------------------------------------CGCA------G-CAGTCTGT--SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGGCGGTGGC---------------------------------------------------------------------------CGCA------............2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGGCGGTGGC---------------------------------------------------------------------------CGCA------G-C.........2312.002000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGGCGGTGGC---------------------------------------------------------------------------CGT...................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
....................................................................CAGTCG-----------------------------------------C---------CGCACCAGCA---G------------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGGCGGTGGC---------------------------------------------------------------------------CG....................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................AGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGC............................................................................................................................................................................................................................................21130.385000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................C--C--------------------------A-------CCATCAGCAGCAGCAG.........................................................................................................1960.332000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AGCAGGCCGCCG-----------CAGCAAA.................................................................................................................................................................................................................1940.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGCA...........................................................................................................................................................................................................................................22110.182000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................AGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGC...............................................................................................................................................................................................................................................18180.173000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................CAGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGC............................................................................................................................................................................................................................................22130.152000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGC-----AGCAGCA---ACAGCAGCA--------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................C--------------------------A-------CCATCAGCAGCAGCAG.........................................................................................................18200.102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000
..AGC-----AGCAGCA---ACAGCAGCA--------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
..................................................................................................................................CAGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGCA...........................................................................................................................................................................................................................................23110.091000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................GCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGCA...........................................................................................................................................................................................................................................21110.091000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..AGC-----AGCAGCA---ACAGCAGCA--------------T---------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGC-----AGCAGCA---ACAGCAGCA--------------T---------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.091000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GC-----AGCAGCA---ACAGCAGCA--------------T---------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.081000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAGC............................................................................................................................................................................................................................................20140.071000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CAGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGC...............................................................................................................................................................................................................................................19180.061000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................CAGCA---G------------------------------------------CAGCA------------------------------------GTCG------------------------------------------------CAGCAC.............................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GC-----AGCAGCA---ACAGCAGCA--------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGC-----AGCAGCA---ACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
droSim2
CGCAG-------------------CT---------------------------------------------------------------------GCAGTCGACGTCG-AC---GCAGTGTTCGCTGCTGCCACC---G---------------------------------------CTGCTGCACTCG---------------------CCGACGTCC--GTTTCTGT-----------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------TGG------------CC-------------------------------CATT-------GC----CGTTGGCC------A-GCTTCAGTG-SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGC........................................................................................................................................................................................................................................................................................................................................................................................................221139.001396176100010000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCTG......................................................................................................................................................................................................................................................................................................................................................................................................241105.0010534581100011000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCT.......................................................................................................................................................................................................................................................................................................................................................................................................23149.00491431000031000000000
...................................................................................................................................................................................TGCTGCACTCG---------------------CCGACGTCC--G......................................................................................................................................................................................................................................................................................................21120.0020125110000000001000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................21112.001253020010000001000
....................................................................................................CGACGTCG-AC---GCAGTGTTCGC........................................................................................................................................................................................................................................................................................................................................................................................................21110.001064000000000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................2318.00834100000000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................2518.00825000001000000000
...................................................................................................................................................................................TGCTGCACTCG---------------------CCGACGTCC--GT.....................................................................................................................................................................................................................................................................................................2217.00701000050000100000
...................................................................................................TCGACGTCG-AC---GCAGTGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................2017.00714010001000000000
....................................................................................................CGACGTCG-AC---GCAGTGTTCGCT.......................................................................................................................................................................................................................................................................................................................................................................................................2215.00522000001000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................2515.00523000000000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................2514.00422000000000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................2314.00422000000000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGT........................................................................................................................................................................................................................................................................................................................................................................................................2213.00303000000000000000
....................................................................................................CGACGTCG-AC---GCAGTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................2013.00303000000000000000
...................................................................................................................................................................................TGCTGCACTCG---------------------CCGACGTCC--.......................................................................................................................................................................................................................................................................................................2012.00201000100000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
....................................................................................................................................................................................................................CGACGTCC--GTTTCTGT-----------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------TGG------------CC-------------------------------...........................................2211.00110000000000000000
....................................................................................................CGACGTCG-AC---GCAGTGTTCGCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
...................................................................................................TCGACGTCG-AC---GCAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....................................................................................................CGACGTCG-AC---GCAGTGTTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..CAG-------------------CT---------------------------------------------------------------------GCAGTCGACGTCG-AC---G..................................................................................................................................................................................................................................................................................................................................................................................................................2121.00220000000000000000
......................................................................................................................................................................................TGCACTCG---------------------CCGACGTCC--G......................................................................................................................................................................................................................................................................................................1811.00100000100000000000
...................................................................................................TCGACGTCG-AC---GCAGTGTTCGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.............................................................................................................................TGCTGCCACC---G---------------------------------------CTGA...............................................................................................................................................................................................................................................................................................................................................15200.7014000000000014000000
...........................................................................................................................GCTGCTGCCACC---G---------------------------------------CTGA...............................................................................................................................................................................................................................................................................................................................................17130.46600000000006000000
...................................................................................................TCGACGTCG-AC---GCAGTGG............................................................................................................................................................................................................................................................................................................................................................................................................1830.33101000000000000000
............................................................................................................................CTGCTGCCACC---G---------------------------------------CTGA...............................................................................................................................................................................................................................................................................................................................................16200.15300000000012000000
droSec2
ACAAC-----AACAACA---ACAGGTGCA--------------G---------------C--------------------------------------------------------------------------A---C------------------------------------------CAACA------------------------------------GCAGCAGCAAAAGCTTCAGTTGCAGCAACAACAGCA---------------GCA---TCAACACAACTCG-------------------------------A------------------------------------AC--------------------------A-----------------------------------ATTTGATTGTCGGCCATCGGGGCAGCTCCTCTGTCCAAGGGC--------GCCT-------G--------ACCTC------A----GCTGT--SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGGC--------GCCT-------G--------ACCTC------A----GCT....2211.0010100
...........................................G---------------C--------------------------------------------------------------------------A---C------------------------------------------CAACA------------------------------------GCAGCAGCA..............................................................................................................................................................................................................................................................................................18170.0610001
droYak3
ACACC-----AGAAACT---ACAACATTG--------------A-----------------------------------------------------------AATCA------------------------------------------------------------------------------------------------------------------GCAGCAGTAGCACTT------------GCAACAGCAGCAGCAGC-----A-GCA---ACAACACTGCA-G-------------------------------GGCAAC---AAGAATGTGTGGGCTTCATT--------------------------------------------------GCAGCA---G------GCAACT-------------------------------------------GCCAACTGGCGACGTGCAACGTGCAACATGCAATGGGCAATGGGCAGTGASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGC-----A-GCA---..............................................................................................................................................................................................................................................21200.05100001000000
droEre2
GCAGC-----AGCAGCC---ACAAGAACA--------------AAAGCAAGCGCTGCAGTCGCAGTCGCA-----------------------------------------------------------GTCGCA---G------------------------------------------CAGCA------------------------------------GCAGCAGCAGCAGCTGCAGTAGCAGCAGCAGCAGCA---GCAG---------------------------------------------------------------------------------------CAGCAGCAAC--------------------------G-CTAGCGT-------------------------------------------------------------------------------------------------CGGCA------G-CAGCATGTC-SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................AGTCGCA-----------------------------------------------------------GTCGCA---G------------------------------------------CAGCA------------------------------------GC.....................................................................................................................................................................................................................................................................................................2120.5010000100
..............................................................................................................................................................................................................................................................AGCA---GCAG---------------------------------------------------------------------------------------CAGCAGCAAC--------------------------G-C..............................................................................................................................20100.1011000000
.....................................................................A-----------------------------------------------------------GTCGCA---G------------------------------------------CAGCA------------------------------------GCAGCAGC...............................................................................................................................................................................................................................................................................................21160.0610000100
....................................................................................................................................................................................................................................................CAGCAGCAGCAGCA---GCAG---------------------------------------------------------------------------------------C....................................................................................................................................................................19200.0510000010
.......................................................GCAGTCGCAGTCGCA-----------------------------------------------------------GTCGC...............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100
....................................................................................................................................GCA---G------------------------------------------CAGCA------------------------------------GCAGCAGCAGCAGCTGC......................................................................................................................................................................................................................................................................................26200.0510100000
...................................................................................................................................CGCA---G------------------------------------------CAGCA------------------------------------GCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................22200.0510000010
..........................................................................................................................................................................................................................................................CAGCAGCA---GCAG---------------------------------------------------------------------------------------CAGCAGC..............................................................................................................................................................19200.0511000000

Generated: 10/20/2015 at 06:53 PM