ID:

dvi_10585

 Coordinate:

scaffold_12963:5582294-5582444 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.0 -18.9 -18.8

Flybase annnotation

CDS [Dvir\GJ16405-cds]; exon [dvir_GLEANR_1691:2]; intron [Dvir\GJ16405-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGCGCATTTGTATGTTGACAGTGCAGCTTGTGTGTGTGTGTATGTGTGTGTGTGTGCGTGTGGGTGTGTATTGTTTACGTGCGCTTGTGCTCGCGTGAATGTGTGAGTGGAATGTCGCTGTTCCAATTAACCAAATCAACAGCAGCAGCAGCAACAACAAAAGCAGGCGCACGCTTAAGAATTATGTTTTATTCTTGCAGAATTGACACCGGAGCAGCAAAAGCTGCTGATTGAGCTGCGTAGAAAAAAG
*****************************************************************........(((((((((.((....)).)))))))))...(((.((((((......)))))).)))......******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060658
140_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 M047
female body
 M028
head
 SRR060664
9_males_carcasses_total
 V116
male body		 SRR060671
9x160_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060665
9_females_carcasses_total
 V047
embryo
 V053
head
 M061
embryo
 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060689
160x9_testes_total
............................................................................................................................................................................................................................AAAGCTGCTGATTGAGCTGC........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCTTGAGCTGCGTAGAA..... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CTTGTGCTCGAGTGAATGTGT.................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCGCTGTTCCAATTAACCAAA................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GATTGAGCTGCGTAGAAAAAA. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGCAGAATTGACACCGGAGCA.................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGTGTATTGTTTACGTGCGCT..................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTGTAGAATTGACACCG....................................... 18 2 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AATCAACAGCAGCAGCAGCAAC............................................................................................... 22 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AGCCTGTGCTCGCATGAATG..................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AATCAACAGCAGCAGCAGCAA................................................................................................ 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATCTGAAAAAGCTGCTGATTGA................ 22 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TAGGTGGGTATTGTTTAGGT.......................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCAACAGCAGCAGCAGCAACAAC............................................................................................ 24 0 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGTGCAATGTCGCCGTT................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................TGGCAGTGCGGCTTGTGTGTT...................................................................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................ATCAACAGCAGCAGCAGCA................................................................................................. 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................AATCAACAGCAGCAGCAGC.................................................................................................. 19 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................TTGTGTGTGTGTGTATGTG............................................................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CAACAGCAGCAGCAGCAACAACA........................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCAACAGCAGCAGCAGCAAC............................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................GTTTACGTGTGCTTGTGCAA.............................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................CAGCAGCAGCAGCAACAA............................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................ACCGGCGCAGCAAAAGCAGT....................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................GTGTTTACGTGTGCTTGTGC................................................................................................................................................................ 20 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................ATGTGTGTGTGTGTGCGTGT............................................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATCAACAGCAGCAGCAGCAACA.............................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................TGTGTATGTGTGTGTGTGTGCGT............................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................ACAGCAGCAGCAGCAACAACA........................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACCAAATCTACATCCGCAGC..................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGCAGCAGCAGCAACAACAA.......................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................GCAGCAGCAGCAACAACAAA......................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................ATGTGTGTGTGTGTGCGTGTG............................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TGTGTATGTGTGTGTGTGT................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CACGCGTAAACATACAACTGTCACGTCGAACACACACACACATACACACACACACACGCACACCCACACATAACAAATGCACGCGAACACGAGCGCACTTACACACTCACCTTACAGCGACAAGGTTAATTGGTTTAGTTGTCGTCGTCGTCGTTGTTGTTTTCGTCCGCGTGCGAATTCTTAATACAAAATAAGAACGTCTTAACTGTGGCCTCGTCGTTTTCGACGACTAACTCGACGCATCTTTTTTC
*******************************************************************************************************************........(((((((((.((....)).)))))))))...(((.((((((......)))))).)))......***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 GSM1528803
follicle cells		 M027
male body
......................................................................................................................................TTAGTTGTCGTCGTCGTCGTT................................................................................................ 21 0 4 0.25 1 1 0 0
.....................................................................................................................................................................................................................................CTAACTCGACGCCTC....... 15 1 9 0.11 1 0 1 0
.......................CGTCGAACACACACACGC.................................................................................................................................................................................................................. 18 1 16 0.06 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:5582244-5582494 + dvi_10585 GT------------GCGCATTTGTATGTT---------G----ACAGTGCAGCT-T------GTGTGTGTGTGTAT-----------------------------GTGT----GTGTG--TGTGCGTGTGGGTGTGTATTGTTTACGTGCGCTTGTGCT----------CGCGT------GAATGTGTGAGTGGAATGTCGC-------------------------------------------------------------------T-------GTTCCAATTAACCAAATCAACA----GC---------------------AGCAGCAG---C-A---A--C---------AACAAAAGCAGG-----CGCAC--GCT-TA-------AGAATTA-------TGT--------------------T----------------------------TTATTC------TTGCAGAATTGACACCGGAGCAGCAAAAGCTGCTGATTGAGCTGCGTAGAAAAAAG
droMoj3 scaffold_6500:17017080-17017354 - GT------------ACGCATACGTATGCT---------G----CCAGTGCAGCT-T------ATACATATGTGCATGGA---------AAAT-G---ATATATGTGTGC----GTGCG--TGTGCTTGTGGGTGTGTATTGTTTACGTGCGCTTG-GCT----------CGTGTGTCTGTGTGTGTGTAAGTGGAATGTCGC-------------------------------------------------------------------T-------GTTCCAATTAACCAAATCAACA----GC---------------------AGCAGCAA---C-ACCAA--C---------AACAAAAGCAAA-----CGAAT--GCT-TA-------AGAATTA-------TGT--------------------T----------------------------TTATTC------TTGCAGAGTTGACACCGGAGCAGCAAAAGCTGGTGATTGAGCTGCGCAGAAAAAAA
droGri2 scaffold_15252:8187867-8188125 + TCTCTCGCTCTAGTGCGC-------------------------ATAGTGCAGCGTT------GTGTTTTTGTGTAT-----------------------------GTGT----GAGTG--TTTGCTTGTGGGTGT-----GTTTACGTGCGCGTATGTGTGAGTGAGTGCGTATGTGTGACTGTGTGTGAGTGGAATGTCGC-------------------------------------------------------------------T-------GTTCCAATTAACCAAATCAACG----GC---------------------AGCAACAA---C-AAC--------------AGCAAAGGCATC-----C----G--CT-TA-------AGAATTA-------TGT--------------------T----------------------------TTATTC------TTGCAGAATTGACGCCTGAGCAACAGAAACTGCTCATCGAGCTGCGCAGAAAGAAG
droWil2 scf2_1100000004822:698984-699174 - TA------------TTTTG----------------ACAC----TCTCCACAGTG-T-------------------------G------TGTGTGTGT------GTGTGT----GTGTG--TGTGTG-------------------------------------TGTG--TGTGTGTGTGTGTGTGTGTGTGTGGCAAGGAGTC------------ATCGTTGTCGTATCCTC---TTTTACAGC-----------------TCCAACTCCGTGCAGTTCTCCA---------GTAACAG----GC---------------------A----------------A--A---------AACAAAAGCACCCAATTTGCAT--CTT-TC-------AAAATCG-------TGT--------------------T----------------------------TTGTT---------------------------------------------------------------
dp5 4_group1:1119307-1119549 - dps_1358 CT------------GCGCAG---------------GCAGGCATCAGATGCAGCCAA------AATGAATAGTGTATGCG---------AGAGTGCGT------GCGTGTATTTCTGTG--TATGCG-------------------------------------TGTG--TGTGTGTGTGGGTGCGTGCTGCTGGAATGT-GT---------------T---G---------------TTGTTGCTGCAGCTGC-GCTGCGCTTCTGCTGC-------GTTCCAATTAACCAAAAAAG-----------------------------------------------------------------------------------------------------------T-------G---T------CCCGT--C----------------------------TCTTTCTTTTGTTTGCAGAACTAACGCCGGAGCAGCAGAAGCTACTGATAGAGCTGCGACGCAAGAAG
droPer2 scaffold_5:4089170-4089412 + CT------------GCGCAG---------------GCAGGCATCAGATGCAGCCAA------AATGAATAGTGTATGCG---------AGAGTGCGT------GCGTGTATTTCTGTG--TATGCG-------------------------------------TGTG--TGTGTGTGTGGGTGCGTGCTGCTGGAATGT-GT---------------T---G---------------TTGTTGCTGCAGCTGC-GCTGCGCTTGTGCTGC-------GTTCCAATTAACCAAAAAAG-----------------------------------------------------------------------------------------------------------T-------G---T------CCCGT--C----------------------------TCTTTCTTTTGTTTGCAGAACTAACGCCGGAGCAGCAGAAGCTACTGATAGAGCTGCGACGCAAGAAG
droAna3 scaffold_12916:9363247-9363534 - CT------------GCGCAT---------------GCAT----CTTATGCAGGT-T-----------------TATTTGTGTTATATATATGT------------GTGT----GTGTG--TCTGACTGTCTCTGT-----GTTTATG----------------TGTG--GGTGTGTTTACATG-------CTGGAATGTTGT------------------------------------TGTTGC-----------------TGCTGTTGT-------GTTCCAATTACCAAAAAGAGGG----GGAAAAAAATATAAATAAAATACAAAAAGAA---A-AAAGAGA-TC-------AGAA---C----------C-A-AACCC-CAACAAT-------TATTATTATTATT-ATTAT------T--ATCTC----------------------------TCGCTT------TTCCAGAACTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGCCGCAAGAAG
droBip1 scf7180000396535:1931451-1931734 - CT------------GCGCAT---------------GCAT----CTTATGCAGGT-T---------------------------TTATGT----------------GTGT----ATGTG--TGTGTC-------------------------------------TGTG--GGTGTGTTTACATG-------ATGGAATGTTGTT------------GTTGTTGTTGTT------------------GGAGCTGCTGCTG--CTGCTGTTGT-------GTTCCAATTACCAAAATGGGGA----AG---------------------AAAAAGAA---G-ATCAGTC-TC----------CAGAT---C--------A-G-CCC-CAATAATTATTAT-TATTATT-------GTT-T------TCCAT--CTCTCTCTATCTTTCTCTCCCTATCTCTTTCACTC------TTTCAGAATTAACGCCGGAGCAGCAAAAGTTGCTGATTGAGCTGCGCCGCAAGAAG
droKik1 scf7180000302549:36559-36797 + CT------------GCGCAT---------------GCAC----TTCATGCAGCT-G-------------------------ATGTGTGTGTGT------------GTGT----GTGTG--TGTCTG--------T-----GAC--------------------TGTG--GGCGTATTTACATGCGTGTTGCTGGAATGT-GT---------------T--------------------------------------------GTGGCTG----------TCAAATTAACAAACAAAAAA-----------------------------CATAAAAAACAATG-----TACGGCTGTTGAC---C---C--------A-A-CCCC----AAA----CAT--TCACTGT-----T---T------CTCGTCTC----------------------------TCCGTC------TTGCAGAATTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGACGCAGGAAG
droFic1 scf7180000453973:482888-483110 + TG------------GCGCGT---------------GCAG----CGAATGCAGA-------------------------------------------------------T----ATGTG--TATGTG-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCCTGGAATGCCGTC------------GTCGTTGCCATT---------GTTGTTGC-----------------TGTAGCTGC-------GTTCCAATTAACCAAATAAAAATCCACA-------------------------AA--------AG-----A--ATTA------------------------G--TTC----AAT-------TATTTTC-------G---T------TACGTCTC----------------------------TC-GTT------TTGCAGAACTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGCCGTAAGAAG
droEle1 scf7180000490970:912539-912750 + TT------------GCGCAT---------------GCAG-------------TT-T-------------------------------------------------GTGT----GTGTG--TGTGTG-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCTTGGAATGCTGTT------------GTCGTTGTT---------------ACTGT-----------------TGTTGCTGC-------GTTCCAATTAACCAAATATAAATTGACA-------------------------A---------GG-----A--ATTA------------------------G--TTC----AAT-------TATTTTT-------G---T------TACGTTTT----------------------------TC-CTC------TTGCAGAACTAACGCCGGAGCAGCAAAAACTGCTGATTGAGCTGCGCCGCAAGAAG
droRho1 scf7180000780056:4938-5139 - TT------------GCGCAT---------------ACAG-----------------------------------------------------------------------------TC--TAAGTG-------------------------------------TGTG--GGTGTGTTTACATGCGTAAGCCTGGAATGCTGCC------------ATAGTTGGTGT---------------TTT-----------------TGTTGCTGC-------TTTCCAATTAACCAAATACAAATTGACA-------------------------A---------AG-----A--AATA------------------------G--TTC----AAT-------TATTTTT-------G---T------TTCGTCTC----------------------------TC-ATT------TTGCAGAATTAACGCCAGAGCAGCAGAAGCTGTTGATTGAGCTGCGCCGCAGGAAG
droBia1 scf7180000302422:3382219-3382473 + TG------------GCGCAC---------------GCAG----CGAGTGCAGCACTCTCTTT-----------------CGCTGCATGTGCCT------------GTAT----GTGTG--CGTGAA-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCCTGGAATGCTGCT------------TTCGTTGTT---------------GTTGC-----------------TGCTGCCTC-------GTTCCAATTAACCAAATAAACT----TG---------------------AGCAAAAC----AAAG-----AGAGGCC------------------------G--CCC----AAT-------TATTACTGTTATT-GGTTTTATTGTT--------------------------------------AAT------TTGCAGAGCTAACGCCGGAGCAGCAGAAGCTGCTGATTGAGCTGCGCCGCAAGAAG
droTak1 scf7180000415390:131703-131955 + TT------------GCGCAC---------------GCAG----CGAGTGCAGCT-C-TCTTT-----------------TGGTGCATGTGTC----------------T----GTATG--TATGTG-------------------------------------TGTG--GGTGTGC-TACATGCGTGTGCCTGGAATGCTGCT------------TTCGTTGTTGTT---------GCTGCTGC-----------------TGCTGCTTC-------GTTCCAATTAACCAAATAAAAA----TG---------------------AACAAAAC----AAAG-----A--AGCA------------------------G--CTC----AAT-------TATTACTGTTATTTGATGTTATTGTT--------------------------------------GTT------TTGCAGAACTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGCCGCAAGAAG
droEug1 scf7180000409752:199322-199560 - TC------------GCGCA-------------------G----CGAATGCAGCT-C------------------------------------TCAGT------GAGTGT----ATGTG--TATGAG-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCCTGGAATGCTGCTTTCATCATTCTTGTTGTTGTTTTT------GTGTTTGCTGC-----------------TGCTGTTGC-------GTTCCAAATCACTAAATAAAAT----T------------------------CAAAAG----AAAG-----A----------------------------------------AAT-------TATAAAT-------G---T------TACGTTTA----------------------------TC-TTC------TTGCAGAACTAACTCCGGAGCAGCAAAAGCTGCTGATTGAGCTGCGCCGAAAGAGG
dm3 chr2L:21756578-21756797 - AT-------------C-------------------GCAT----CGCAAACAGCT-C-------------------------------------------------G--------TGTATGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGCGCGTGTGCCTGGAATGCTGCT------------CTGGTG-TTT-----TTTATTTTTACTGT-----------------TGGTGTTGC-------GATACAATTTACAAAATGCCCA----GA---------------------AACAAGTA----TATG-----A----------------------------------------ATT-------TATTATT-------G---A------TTCGCATC----------------------------TCGTTC------TTGCAGAACTTACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAG
droSim2 2l:21067212-21067442 - GC------------CCACAA---GATGCTTTCATCGCAT----CCCAAACAGCT-C-------------------------------------------------G--------TGCATGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGTGCGTATGCCTGGAATGCTGCT------------CTGGTG-TTT-----TT---TTTTACTGT-----------------TGTTGCTGC-------GATACAATTTACAAAATGCCCA----GA---------------------AACAAATA----TATG----------------------------------------------AAT-------TATTATT-------G---A------TTCGC--C----------------------------TCGTTC------TTGCAGAACTTACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAG
droSec2 scaffold_28:317205-317430 - AC------------AAG-------ATGCTTTCATCGCAT----CGCAAACAGCT-C-------------------------------------------------G--------TGCATGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGTGCGTATGCCTGGAATGCTGCT------------CTGGT-GTTTTT---------TTTACTGT-----------------TGTTGCTGC-------GATACAATTTACAAAATGCCCA----GA---------------------AACAAATA----TATG----------------------------------------------AAT-------TATTATT-------G---A------TTCGC--C----------------------------TCGTTC------TTGCAGAACTTACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAG
droYak3 X:13743109-13743257 - CG---------------TATATGTACTTT---------G----CTAT--------------------------------TGCTGTGTGTGTGT------------GTGT----GT--------GTG-------------------------------------TGTG--TGTGTGTGTGAGTGTGT-------------AGTT------------TATATAT---------------ATATTAC-----------------TATAGCTAC-------AT-------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------GAATTT------GTTTAAACTTTAAACTTAAGCGACAACGACAAC------GACAACAACACGGGCGG
droEre2 scaffold_4690:12644708-12644851 + TG------------CAGTGT---------------G----------------------------------------------------TGTGT------------GTGT----GTGTG--TGTGTG-------------------------------------TGTG--TGTGTGTGTGTGTGTGTGTGTGTGGGG-------------------------------------------------------------------------------------------ACCCAAAGGATG----TG-------------TCGACAACAAGAACAA---C-AACAGCA-GC-------AACAGCGGCATG-----C-----------GACAATTAAAATTTT-------TGC--------------------G----------------------------ATTCTG------T--------------------------------------------------CGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GT------------GCGCATTTGTATGTT---------G----ACAGTGCAGCT-T------GTGTGTGTGTGTAT-----------------------------GTGT----GTGTG--TGTGCGTGTGGGTGTGTATTGTTTACGTGCGCTTGTGCT----------CGCGT------GAATGTGTGAGTGGAATGTCGC-------------------------------------------------------------------T-------GTTCCAATTAACCAAATCAACA----GC---------------------AGCAGCAG---C-A---A--C---------AACAAAAGCAGG-----CGCAC--GCT-TA-------AGAATTA-------TGT--------------------T----------------------------TTATTC------TTGCAGAATTGACACCGGAGCAGCAAAAGCTGCTGATTGAGCTGCGTAGAAAAAAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTGCTGATTGAGCTGC...........2011.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................TCGC-------------------------------------------------------------------T-------GTTCCAATTAACCAAA..........................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCTGCGTAGAAAAAA.2111.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAATTGACACCGGAGCA..................................2111.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................TGTGTATTGTTTACGTGCGCT......................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AATCAACA----GC---------------------AGCAGCAG---C-A---A--C---------...........................................................................................................................................................................2230.331000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AATCAACA----GC---------------------AGCAGCAG---C-A---A--.....................................................................................................................................................................................2140.251000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATCAACA----GC---------------------AGCAGCAG---C-A---A--C---------AAC........................................................................................................................................................................2480.131001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATCAACA----GC---------------------AGCAGCAG---C-A---........................................................................................................................................................................................19200.102000000000000000001000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AATCAACA----GC---------------------AGCAGCAG---C-............................................................................................................................................................................................19150.071000000000000000001000000000000000000000000000000000000000000000
.....................................................T-T------GTGTGTGTGTGTAT-----------------------------GTG...................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CAACA----GC---------------------AGCAGCAG---C-A---A--C---------AACA.......................................................................................................................................................................23200.051000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATCAACA----GC---------------------AGCAGCAG---C-A---A--C---------...........................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CA----GC---------------------AGCAGCAG---C-A---A--C---------AA.........................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
..........................................................................AT-----------------------------GTGT----GTGTG--TGTGCGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................ATCAACA----GC---------------------AGCAGCAG---C-A---A--C---------A..........................................................................................................................................................................22200.051000000000000000000000000000000000000010000000000000000000000000
.....................................................................TGTGTAT-----------------------------GTGT----GTGTG--TGTGCGT................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................ACA----GC---------------------AGCAGCAG---C-A---A--C---------AACA.......................................................................................................................................................................21200.051000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................A----GC---------------------AGCAGCAG---C-A---A--C---------AACAA......................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................GC---------------------AGCAGCAG---C-A---A--C---------AACAAA.....................................................................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................................AT-----------------------------GTGT----GTGTG--TGTGCGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................TGTGTAT-----------------------------GTGT----GTGTG--TGT....................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
GT------------ACGCATACGTATGCT---------G----CCAGTGCAGCT-T------ATACATATGTGCATGGA---------AAAT-G---ATATATGTGTGC----GTGCG--TGTGCTTGTGGGTGTGTATTGTTTACGTGCGCTTG-GCT----------CGTGTGTCTGTGTGTGTGTAAGTGGAATGTCGC-------------------------------------------------------------------T-------GTTCCAATTAACCAAATCAACA----GC---------------------AGCAGCAA---C-ACCAA--C---------AACAAAAGCAAA-----CGAAT--GCT-TA-------AGAATTA-------TGT--------------------T----------------------------TTATTC------TTGCAGAGTTGACACCGGAGCAGCAAAAGCTGGTGATTGAGCTGCGCAGAAAAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................CAACA----GC---------------------AGCAGCAA---C-ACC.........................................................................................................................................................................................19200.051000010
droGri2
TCTCTCGCTCTAGTGCGC-------------------------ATAGTGCAGCGTT------GTGTTTTTGTGTAT-----------------------------GTGT----GAGTG--TTTGCTTGTGGGTGT-----GTTTACGTGCGCGTATGTGTGAGTGAGTGCGTATGTGTGACTGTGTGTGAGTGGAATGTCGC-------------------------------------------------------------------T-------GTTCCAATTAACCAAATCAACG----GC---------------------AGCAACAA---C-AAC--------------AGCAAAGGCATC-----C----G--CT-TA-------AGAATTA-------TGT--------------------T----------------------------TTATTC------TTGCAGAATTGACGCCTGAGCAACAGAAACTGCTCATCGAGCTGCGCAGAAAGAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TA------------TTTTG----------------ACAC----TCTCCACAGTG-T-------------------------G------TGTGTGTGT------GTGTGT----GTGTG--TGTGTG-------------------------------------TGTG--TGTGTGTGTGTGTGTGTGTGTGTGGCAAGGAGTC------------ATCGTTGTCGTATCCTC---TTTTACAGC-----------------TCCAACTCCGTGCAGTTCTCCA---------GTAACAG----GC---------------------A----------------A--A---------AACAAAAGCACCCAATTTGCAT--CTT-TC-------AAAATCG-------TGT--------------------T----------------------------TTGTT---------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CT------------GCGCAG---------------GCAGGCATCAGATGCAGCCAA------AATGAATAGTGTATGCG---------AGAGTGCGT------GCGTGTATTTCTGTG--TATGCG-------------------------------------TGTG--TGTGTGTGTGGGTGCGTGCTGCTGGAATGT-GT---------------T---G---------------TTGTTGCTGCAGCTGC-GCTGCGCTTCTGCTGC-------GTTCCAATTAACCAAAAAAG-----------------------------------------------------------------------------------------------------------T-------G---T------CCCGT--C----------------------------TCTTTCTTTTGTTTGCAGAACTAACGCCGGAGCAGCAGAAGCTACTGATAGAGCTGCGACGCAAGAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCGGAGCAGCAGAAGCT.........................2011.0010000100000
droPer2
CT------------GCGCAG---------------GCAGGCATCAGATGCAGCCAA------AATGAATAGTGTATGCG---------AGAGTGCGT------GCGTGTATTTCTGTG--TATGCG-------------------------------------TGTG--TGTGTGTGTGGGTGCGTGCTGCTGGAATGT-GT---------------T---G---------------TTGTTGCTGCAGCTGC-GCTGCGCTTGTGCTGC-------GTTCCAATTAACCAAAAAAG-----------------------------------------------------------------------------------------------------------T-------G---T------CCCGT--C----------------------------TCTTTCTTTTGTTTGCAGAACTAACGCCGGAGCAGCAGAAGCTACTGATAGAGCTGCGACGCAAGAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CT------------GCGCAT---------------GCAT----CTTATGCAGGT-T-----------------TATTTGTGTTATATATATGT------------GTGT----GTGTG--TCTGACTGTCTCTGT-----GTTTATG----------------TGTG--GGTGTGTTTACATG-------CTGGAATGTTGT------------------------------------TGTTGC-----------------TGCTGTTGT-------GTTCCAATTACCAAAAAGAGGG----GGAAAAAAATATAAATAAAATACAAAAAGAA---A-AAAGAGA-TC-------AGAA---C----------C-A-AACCC-CAACAAT-------TATTATTATTATT-ATTAT------T--ATCTC----------------------------TCGCTT------TTCCAGAACTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGCCGCAAGAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CT------------GCGCAT---------------GCAT----CTTATGCAGGT-T---------------------------TTATGT----------------GTGT----ATGTG--TGTGTC-------------------------------------TGTG--GGTGTGTTTACATG-------ATGGAATGTTGTT------------GTTGTTGTTGTT------------------GGAGCTGCTGCTG--CTGCTGTTGT-------GTTCCAATTACCAAAATGGGGA----AG---------------------AAAAAGAA---G-ATCAGTC-TC----------CAGAT---C--------A-G-CCC-CAATAATTATTAT-TATTATT-------GTT-T------TCCAT--CTCTCTCTATCTTTCTCTCCCTATCTCTTTCACTC------TTTCAGAATTAACGCCGGAGCAGCAAAAGTTGCTGATTGAGCTGCGCCGCAAGAAGSizeHit CountTotal NormTotal
No Reads
droKik1
CT------------GCGCAT---------------GCAC----TTCATGCAGCT-G-------------------------ATGTGTGTGTGT------------GTGT----GTGTG--TGTCTG--------T-----GAC--------------------TGTG--GGCGTATTTACATGCGTGTTGCTGGAATGT-GT---------------T--------------------------------------------GTGGCTG----------TCAAATTAACAAACAAAAAA-----------------------------CATAAAAAACAATG-----TACGGCTGTTGAC---C---C--------A-A-CCCC----AAA----CAT--TCACTGT-----T---T------CTCGTCTC----------------------------TCCGTC------TTGCAGAATTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGACGCAGGAAGSizeHit CountTotal NormTotal
No Reads
droFic1
TG------------GCGCGT---------------GCAG----CGAATGCAGA-------------------------------------------------------T----ATGTG--TATGTG-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCCTGGAATGCCGTC------------GTCGTTGCCATT---------GTTGTTGC-----------------TGTAGCTGC-------GTTCCAATTAACCAAATAAAAATCCACA-------------------------AA--------AG-----A--ATTA------------------------G--TTC----AAT-------TATTTTC-------G---T------TACGTCTC----------------------------TC-GTT------TTGCAGAACTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGCCGTAAGAAGSizeHit CountTotal NormTotal
No Reads
droEle1
TT------------GCGCAT---------------GCAG-------------TT-T-------------------------------------------------GTGT----GTGTG--TGTGTG-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCTTGGAATGCTGTT------------GTCGTTGTT---------------ACTGT-----------------TGTTGCTGC-------GTTCCAATTAACCAAATATAAATTGACA-------------------------A---------GG-----A--ATTA------------------------G--TTC----AAT-------TATTTTT-------G---T------TACGTTTT----------------------------TC-CTC------TTGCAGAACTAACGCCGGAGCAGCAAAAACTGCTGATTGAGCTGCGCCGCAAGAAGSizeHit CountTotal NormTotal
No Reads
droRho1
TT------------GCGCAT---------------ACAG-----------------------------------------------------------------------------TC--TAAGTG-------------------------------------TGTG--GGTGTGTTTACATGCGTAAGCCTGGAATGCTGCC------------ATAGTTGGTGT---------------TTT-----------------TGTTGCTGC-------TTTCCAATTAACCAAATACAAATTGACA-------------------------A---------AG-----A--AATA------------------------G--TTC----AAT-------TATTTTT-------G---T------TTCGTCTC----------------------------TC-ATT------TTGCAGAATTAACGCCAGAGCAGCAGAAGCTGTTGATTGAGCTGCGCCGCAGGAAGSizeHit CountTotal NormTotal
No Reads
droBia1
TG------------GCGCAC---------------GCAG----CGAGTGCAGCACTCTCTTT-----------------CGCTGCATGTGCCT------------GTAT----GTGTG--CGTGAA-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCCTGGAATGCTGCT------------TTCGTTGTT---------------GTTGC-----------------TGCTGCCTC-------GTTCCAATTAACCAAATAAACT----TG---------------------AGCAAAAC----AAAG-----AGAGGCC------------------------G--CCC----AAT-------TATTACTGTTATT-GGTTTTATTGTT--------------------------------------AAT------TTGCAGAGCTAACGCCGGAGCAGCAGAAGCTGCTGATTGAGCTGCGCCGCAAGAAGSizeHit CountTotal NormTotal
No Reads
droTak1
TT------------GCGCAC---------------GCAG----CGAGTGCAGCT-C-TCTTT-----------------TGGTGCATGTGTC----------------T----GTATG--TATGTG-------------------------------------TGTG--GGTGTGC-TACATGCGTGTGCCTGGAATGCTGCT------------TTCGTTGTTGTT---------GCTGCTGC-----------------TGCTGCTTC-------GTTCCAATTAACCAAATAAAAA----TG---------------------AACAAAAC----AAAG-----A--AGCA------------------------G--CTC----AAT-------TATTACTGTTATTTGATGTTATTGTT--------------------------------------GTT------TTGCAGAACTAACGCCGGAGCAGCAGAAACTGCTGATTGAGCTGCGCCGCAAGAAGSizeHit CountTotal NormTotal
No Reads
droEug1
TC------------GCGCA-------------------G----CGAATGCAGCT-C------------------------------------TCAGT------GAGTGT----ATGTG--TATGAG-------------------------------------TGTG--GGTGTGTTTACATGCGTGTGCCTGGAATGCTGCTTTCATCATTCTTGTTGTTGTTTTT------GTGTTTGCTGC-----------------TGCTGTTGC-------GTTCCAAATCACTAAATAAAAT----T------------------------CAAAAG----AAAG-----A----------------------------------------AAT-------TATAAAT-------G---T------TACGTTTA----------------------------TC-TTC------TTGCAGAACTAACTCCGGAGCAGCAAAAGCTGCTGATTGAGCTGCGCCGAAAGAGGSizeHit CountTotal NormTotal
No Reads
dm3
AT-------------C-------------------GCAT----CGCAAACAGCT-C-------------------------------------------------G--------TGTATGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGCGCGTGTGCCTGGAATGCTGCT------------CTGGTG-TTT-----TTTATTTTTACTGT-----------------TGGTGTTGC-------GATACAATTTACAAAATGCCCA----GA---------------------AACAAGTA----TATG-----A----------------------------------------ATT-------TATTATT-------G---A------TTCGCATC----------------------------TCGTTC------TTGCAGAACTTACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTGCGACGCAAGAAG1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTACACCGGAGCAGCAAA.............................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AT----CGCAAACAGCT-C-------------------------------------------------G--------TGTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................CAAACAGCT-C-------------------------------------------------G--------TGTATGCACG...................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000
.....................................................................................................................................................................TA--TGTGTGT-TGGGCGCGTGTG..................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................CTGGAATGCTGCT------------CTGGTG-TT...............................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000000000000000000000000010000
...................................................................................................................................................................TGTA--TGTGTGT-TGGGCGCGTG....................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000100000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCATC----------------------------TCGTTC------TTGCAGA.................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCTGCGACGCAAGAAG2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000
........................................................................................................................CACGTG-------------------------------------TGTA--TGTGTGT-TGGG..........................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................CGTGTGCCTGGAATGCTGCT------------C.......................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000
..............................................AAACAGCT-C-------------------------------------------------G--------TGTATGCACGT..................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATTATT-------G---A------TTCGCATC----------------------------TCGTT...............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGCTGATTGAGCTGCGACGC......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.T-------------C-------------------GCAT----CGCAAACAGCT-C-------------------------------------------------G--------TG...........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCGGAGCAGCAAAAACTGC.......................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TATTTTTACTGT-----------------TGGTGTTGC-------..........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGCTGATTGAGCTGCGACGCA.....2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------TTGCAGAACTTACACCGGAG....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAACTGCTGATTGAG...............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACCGGAGCAGCAAAAACTG........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................T-------G---A------TTCGCATC----------------------------TCGTTC------TTGC....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................GGAATGCTGCT------------CTGGTG-TTT-----.........................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
......................................................................................................................................................................................GCGTGTGCCTGGAATGCTGCT------------........................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTTACACCGGAGCAGCAAAAACTG........................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GCCTGGAATGCTGCT------------CTGGTG-T................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................CTGGAATGCTGCT------------CTGGTG-TTT-----.........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTATGCACGTG-------------------------------------TGTA--TGTG..................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AAACAGCT-C-------------------------------------------------G--------TGTATGCACGC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................ATTTTTACTGT-----------------TGGTGTTGC-------G.........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................G--------TGTATGCACGTG-------------------------------------TGTA--TG....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGAGCTGCGACGCAAG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATC----------------------------TCGTTC------TTGCAGA.................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................ACGTG-------------------------------------TGTA--TGTGTGT-TGGGC.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TTATT-------G---A------TTCGCATC----------------------------TCGTT...............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................A--TGTGTGT-TGGGCGCGTGTGT.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................CAT----CGCAAACAGCT-C-------------------------------------------------G--------TGTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAT----CGCAAACAGCT-C-------------------------------------------------G--------TGTATGCACGT..................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGAGCAGCAAAAACTG........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................T-------TATTATT-------G---A------TTCGCATC----------------------------TCGT................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TTACTGT-----------------TGGTGTTGC-------GATA......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................C-------------------------------------------------G--------TGTATGCACGTG-------------------------------------TGTA--TG....................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGATTGAGCTGCGACGCA.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TATTTTTACTGT-----------------TGGTGTT...................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGATTGAGCTGCGACGCAAGA..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGCGC.......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------TTGCAGAACTTACACCGGAGT...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................A--TGTGTGT-TGGGCGCGTGTGC.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................C-------------------------------------------------G--------TGTATGCACGTG-------------------------------------TGTA--TGT...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTTATTTTTACTGT-----------------TGGTGTT...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTACACCGGAGCAGCAAAAACT.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTTACACCGGAGCAG.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TTATT-------G---A------TTCGCATC----------------------------TCGTTC------TTGCA...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................TA--TGTGTGT-TGGGCGCGTGTGCC................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................CGTGTGCCTGGAATGCTGC.....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CGCGTGTGCCTGGAATGCTGC.....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACACCGGAGCAGCAA..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TGTGTGT-TGGGCGCGTGTGCC................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................AGCT-C-------------------------------------------------G--------TGTATGCACGTG-------------------------------------............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGAGCTGCGACGCAAG...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GCCCA----GA---------------------AACAAGTA----TATG-----A----------------------------------------A..........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GTGTGT-TGGGCGCGTGTGCCCT..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................................................................................................................................................................TGCCTGGAATGCTGCT------------CTGG....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TGGAATGCTGCT------------CTGGTG-TT...............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................TGTGT-TGGGCGCGTGTGCCTG..............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGCTGATTGAGCTGCGA.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAACTTACACCGGAGCA..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................G-------------------------------------TGTA--TGTGTGT-TGGGCGCG......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
AT-------------C-------------------GCAT----CGCAAACAGCT-C-------------------------------------------------G--------TG...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................ACGTG-------------------------------------TGTA--TGTGTGT-TGGGCT........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TA--TGTGTGT-TGGGCGCGTGTGC.................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGAGCAGCAAAAACTGCTGAT...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................CAGCT-C-------------------------------------------------G--------TGTATGCACGTG-------------------------------------T...........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTTTTACTGT-----------------TGGTGTTGC-------GA........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCTGATTGAGCTGC...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGAGCTGCGACGCAAGAAG2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CGTG-------------------------------------TGTA--TGTGTGT-TGGGCG........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTGCTGATTGAGCTGC...........2011.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCTGCGACGCAAGAAG2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTTACACCGGAGCAGC................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................TGTGCCTGGAATGCTGCT------------CTG.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................GTATGCACGTG-------------------------------------TGTA--TGTGTG................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GCCTGGAATGCTGCT------------CTGG....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................C-------------------------------------------------G--------TGTATGCACGTG-------------------------------------TGTA--TGTGTG................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................CGTG-------------------------------------TGTA--TGTGTGT-TGG...........................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................CGTG-------------------------------------TGTA--TGTGTGT-TGGA..........................................................................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GC------------CCACAA---GATGCTTTCATCGCAT----CCCAAACAGCT-C-------------------------------------------------G--------TGCATGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGTGCGTATGCCTGGAATGCTGCT------------CTGGTG-TTT-----TT---TTTTACTGT-----------------TGTTGCTGC-------GATACAATTTACAAAATGCCCA----GA---------------------AACAAATA----TATG----------------------------------------------AAT-------TATTATT-------G---A------TTCGC--C----------------------------TCGTTC------TTGCAGAACTTACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................GCATGCACGTG-------------------------------------TGTA--TGT...................................................................................................................................................................................................................................................................................................................................................................1814.00400004000000000000
......................................................................................................................TGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGTG........................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGATTGAGCTGCGACGCAAGA..2611.00100000000000010000
droSec2
AC------------AAG-------ATGCTTTCATCGCAT----CGCAAACAGCT-C-------------------------------------------------G--------TGCATGCACGTG-------------------------------------TGTA--TGTGTGT-TGGGTGCGTATGCCTGGAATGCTGCT------------CTGGT-GTTTTT---------TTTACTGT-----------------TGTTGCTGC-------GATACAATTTACAAAATGCCCA----GA---------------------AACAAATA----TATG----------------------------------------------AAT-------TATTATT-------G---A------TTCGC--C----------------------------TCGTTC------TTGCAGAACTTACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CG---------------TATATGTACTTT---------G----CTAT--------------------------------TGCTGTGTGTGTGT------------GTGT----GT--------GTG-------------------------------------TGTG--TGTGTGTGTGAGTGTGT-------------AGTT------------TATATAT---------------ATATTAC-----------------TATAGCTAC-------AT-------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------GAATTT------GTTTAAACTTTAAACTTAAGCGACAACGACAAC------GACAACAACACGGGCGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TG------------CAGTGT---------------G----------------------------------------------------TGTGT------------GTGT----GTGTG--TGTGTG-------------------------------------TGTG--TGTGTGTGTGTGTGTGTGTGTGTGGGG-------------------------------------------------------------------------------------------ACCCAAAGGATG----TG-------------TCGACAACAAGAACAA---C-AACAGCA-GC-------AACAGCGGCATG-----C-----------GACAATTAAAATTTT-------TGC--------------------G----------------------------ATTCTG------T--------------------------------------------------CGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................ACAGCA-GC-------AACAGCGGCAT................................................................................................................................................................1930.3310000010
..............CAGTGT---------------G----------------------------------------------------TGTGT------------GTGT----GTGTG--TGTG...................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000010
...............AGTGT---------------G----------------------------------------------------TGTGT------------GTGT----GTGTG--TGTGTG-------------------------------------T...........................................................................................................................................................................................................................................................................................................................................................................27200.0510000010

Generated: 05/19/2015 at 04:14 PM