dvi_10197

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACCGACCATTTTCTGGGGTTTATAGCCCTGTAATGCATTTATTAAATTTATTTCGGAACTAAGGCAACTCTGTTCACAGCGATACGTGAGTTTCGTGTAGTGAGCCCTTTCACGCTCCCATATCTAAACAATCCTTAGTCCTTGTTTCATAGCATATTAATTTTTCTTCTCTCGCTCTCGCTACCATTCTCTCCAATGCAGCTGAGCACGGCTCTTCCAGCGATGACACTGTCTCATCGTCGTTTTATGGC ************************************************.....((((..((....))..))))..(((((...(((((...........((((........))))......((((.......))))....((((....))))................)))))..)))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	M061 embryo	V047 embryo	SRR060671 9x160_males_carcasses_total	SRR060662 9x160_0-2h_embryos_total	V053 head	V116 male body	M027 male body	SRR060666 160_males_carcasses_total	SRR060688 160_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total
...........................................................................................GTCGGGTAGTGAGGCCTT..............................................................................................................................................	18	3	20	6.95	139	139	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TCGGGTAGTGAGGCCTTG.............................................................................................................................................	18	3	20	1.50	30	28	0	0	0	0	0	0	0	0	0	1	1
..................................................................................................................................................................................................................................CACTGTCTCATCGTCGTTTTATGG.	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................TCGTGTAGTGAGGGCTTT.............................................................................................................................................	18	2	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGGTCGGGTAGTGAGCCC................................................................................................................................................	18	3	15	0.27	4	0	0	0	0	2	1	1	0	0	0	0	0
...........................................................................................GTCGGGTAGTGAGGCCTTT.............................................................................................................................................	19	3	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGTTTCGGGTAGTGAGGGC................................................................................................................................................	19	3	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GCCCCCTCTACCATTCTCTCC.........................................................	21	3	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................AGGGTCGTGTAGTGAGGCC................................................................................................................................................	19	3	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTTCCACCGTTGAAACTGT...................	19	3	18	0.11	2	0	0	0	1	0	0	0	1	0	0	0	0
...................................................................................................................TCCCATATCTCAACAGGCC.....................................................................................................................	19	3	19	0.11	2	1	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................TCTTCCACCGATGTCACTT....................	19	3	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................GGGTCGTGTAGTGATCCC................................................................................................................................................	18	3	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TGAGGGTCGGGTAGTGAGC..................................................................................................................................................	19	3	12	0.08	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TCACAGCCATACGTGAAGT...............................................................................................................................................................	19	3	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................TACTGCGCCCTTTCAAGCT.......................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0

TGGCTGGTAAAAGACCCCAAATATCGGGACATTACGTAAATAATTTAAATAAAGCCTTGATTCCGTTGAGACAAGTGTCGCTATGCACTCAAAGCACATCACTCGGGAAAGTGCGAGGGTATAGATTTGTTAGGAATCAGGAACAAAGTATCGTATAATTAAAAAGAAGAGAGCGAGAGCGATGGTAAGAGAGGTTACGTCGACTCGTGCCGAGAAGGTCGCTACTGTGACAGAGTAGCAGCAAAATACCG ************************************************.....((((..((....))..))))..(((((...(((((...........((((........))))......((((.......))))....((((....))))................)))))..)))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060687 9_0-2h_embryos_total	V116 male body	M061 embryo	M047 female body	SRR060668 160x9_males_carcasses_total	SRR060689 160x9_testes_total	SRR060658 140_ovaries_total	M027 male body
.................................................................................................................................................................................................................CGGAGAAGGTCGCTATTCTG......................	20	3	6	0.67	4	1	2	0	1	0	0	0	0
.....................................................................................................................GGAATAGATAAGTTAGGAATC.................................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0
............................................................................................AGCACATCACTCGAGTAATT...........................................................................................................................................	20	3	5	0.20	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................AGAAGGTCGCTACCATGATA...................	20	3	6	0.17	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................AAGAGGGGTTACGTCGTC...............................................	18	2	7	0.14	1	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................AGAAGGTCGGTATTCTGAC....................	19	3	17	0.06	1	0	0	0	0	0	0	1	0
...........................................................................................................AAAGTCCGAGAGTATAGCT.............................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_12963:2517355-2517605 -	dvi_10197	ACCGACCATTTTCTGGGGTTTATAGCCCTGTAATGCATTTATTAAATTTATTTCGGAACTAAGGCAACTCTGTTCACAGCGATACGTGAGTTTCGTGTAGTGAGCCCTTTCACGCTCCCATATCTAAACAATCCTT---------------------AGTCCTTGTTTCATAGCATATTAATTTTT-CTTCTCTCGCTCTCGCTACCATTCTCTCCAATGCAGCTGAGCACGGCTCTTCCAGCGATGACACTGTCTCATCGTCGTTTTATGGC
droMoj3	scaffold_6500:12691343-12691520 -		ATAGA---------------------------------------------------------------------------TACACTTGCTTTCCATTTAGTAATCCTTTGCACGTTGTCATCTCTAAGCAAGACCTTTTGGATATTTGTATTAATCCAGA-------------------CATTTCTCTTTCTCTCTCTCTCTCTCTCACTCAC-TATCTTCAGCTGAGCACGGCTCTTCCAGCGATGACACGGTCTCATCGTCGTTTTATGGC
droGri2	scaffold_15252:2126497-2126561 -		TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTTGTTGCAGCTGAGCACGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTTTATGGA
droWil2	scf2_1100000004521:6782025-6782124 -		AATTT----------------TTATTGCTTAAAAGTCGTTACTAAACTTC------------------------------C----------T---------------------------------------------------------------------------------------------------------------------TCCTTTCCTTACAGCTGAGCACGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTCTATGGC
dp5	4_group5:3601-3661 -		TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCACAGCAGAGCCCGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTCTACGGC
droPer2	scaffold_5:4503268-4503348 -		CCTCT---------------------------------------------------------------------------TAGACTCGAATT---------------------------------------------------------------------------------------------------------------------TCCATTCTCCACAGCAGAGCCCGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTCTACGGC
droAna3	scaffold_13258:42049-42102 +		G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCAATCCCAGCTCATCTAGTGATGACACCATTGAATCTTCATTCTATGGA
droBip1	scf7180000396329:10225-10282 -		CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCAGCCAATCCTAGCTCATCTAGTGATGACACCGTTGCATCATCTTTCGATGGA
droKik1	scf7180000302644:30663-30733 +		CTTGT---------------------------------------------------------------------------TG-------------------------------------------------------------------------------------------------------------------------------TTTTTTTCTTACAGCTGAGCCTGACTCTTCTAGCGACGACACACTTTCATCGTCTTTCTGCGGC
droFic1	scf7180000453851:273828-273875 +		TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCACAGCTGA-----------CCAGCAACGAAACCC---TATGCTCTTCCTGTGGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACCGACCATTTTCTGGGGTTTATAGCCCTGTAATGCATTTATTAAATTTATTTCGGAACTAAGGCAACTCTGTTCACAGCGATACGTGAGTTTCGTGTAGTGAGCCCTTTCACGCTCCCATATCTAAACAATCCTT---------------------AGTCCTTGTTTCATAGCATATTAATTTTT-CTTCTCTCGCTCTCGCTACCATTCTCTCCAATGCAGCTGAGCACGGCTCTTCCAGCGATGACACTGTCTCATCGTCGTTTTATGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................CACTGTCTCATCGTCGTTTTATGG.	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATAGA---------------------------------------------------------------------------TACACTTGCTTTCCATTTAGTAATCCTTTGCACGTTGTCATCTCTAAGCAAGACCTTTTGGATATTTGTATTAATCCAGA-------------------CATTTCTCTTTCTCTCTCTCTCTCTCTCACTCAC-TATCTTCAGCTGAGCACGGCTCTTCCAGCGATGACACGGTCTCATCGTCGTTTTATGGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................TCTCACTCAC-TATCTTCAG..................................................	19	1	1.00	1	0	0	0	0	1	0

droGri2

TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTTGTTGCAGCTGAGCACGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTTTATGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................GCTCTTCCAGCGATGACACC.....................	20	1	1.00	1	1	0

droWil2

AATTT----------------TTATTGCTTAAAAGTCGTTACTAAACTTC------------------------------C----------T---------------------------------------------------------------------------------------------------------------------TCCTTTCCTTACAGCTGAGCACGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTCTATGGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................GGCTCTTCCAGCGATGACACC.....................	21	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................CCGTCTCATCGTCGTTCTATGGC	23	1	1.00	1	0	0	0	1	0

dp5

TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCACAGCAGAGCCCGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTCTACGGC

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

CCTCT---------------------------------------------------------------------------TAGACTCGAATT---------------------------------------------------------------------------------------------------------------------TCCATTCTCCACAGCAGAGCCCGGCTCTTCCAGCGATGACACCGTCTCATCGTCGTTCTACGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCAATCCCAGCTCATCTAGTGATGACACCATTGAATCTTCATTCTATGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCAGCCAATCCTAGCTCATCTAGTGATGACACCGTTGCATCATCTTTCGATGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTTGT---------------------------------------------------------------------------TG-------------------------------------------------------------------------------------------------------------------------------TTTTTTTCTTACAGCTGAGCCTGACTCTTCTAGCGACGACACACTTTCATCGTCTTTCTGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCACAGCTGA-----------CCAGCAACGAAACCC---TATGCTCTTCCTGTGGT	Size	Hit Count	Total Norm	Total
No Reads

dvi_10197

scaffold_12963:2517405-2517555 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads