dvi_10194

intron [Dvir\GJ13036-in]; exon [dvir_GLEANR_1296:2]; CDS [Dvir\GJ13036-cds]; intron [Dvir\GJ13036-in]

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##########################################-------- CCAATAAGGTGGGCCAAGTGGATCCGACCGGTACATTTTGTGCGGTGCCCGATGAGTGGCTGAAAAAGAAACTGGGTAAACTCAAAAACCACAATAACTGATTAACTGTGTCGCAGTACCAAGAAAAAGAAGAAGAAGAATAACGTAGCATACCAATGCAATTTAAAACTAATCATCTTTTTATCTCTATTCTCTTCGCAGTGGAGGCGGCAGAACCGCCCACCGCTAGACAACTTTATAGCAGTAAGTAC *****************************************************....((.............(((...........................((((.....)))))))..........))..*******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060668 160x9_males_carcasses_total	V116 male body	SRR060672 9x160_females_carcasses_total	V047 embryo	SRR060667 160_females_carcasses_total	SRR060657 140_testes_total	SRR060664 9_males_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR1106727 larvae	M027 male body	SRR060663 160_0-2h_embryos_total	SRR060676 9xArg_ovaries_total
................................................................................................................................................................................................................GGCAGAACCGCCCACCGCTA.......................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................GACCGGTACATTTTGTGCGGTGCC..........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................CATTTTGTGCGGTGCCCGATGAGT..................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................CGATGAGTGGCTGAAAAAGA......................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................CCGGTACATTTTGTGCGGT.............................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..........GGGCCAAGTGGATCCGACCGGT...........................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GGCAGAACCGCCCACCGCTAGACAACTT...............	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CGATGAGTGGCTGAAAAAGAAACT..................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..............CAAGTGGATCCGACCGGTACATTTTGT..................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GTGGCTGAAAAAGAAACT..................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................GTACCAAGAAAAAGAAGAA.....................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0
......................AGTGACCGGTACATTTTGTGCG...............................................................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GTGCGGTGCCCGATGAGT..................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................ATTTTGTGCGGTGCCCGATGA....................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GGCAGAACCGCCCACCGCTAGACAACT................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..AATAAGGTGGGCCAAGTGGATC...................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CGGCAGAACCGCCCACCGCTAGACAC..................	26	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ACCGCCCACCGCTAGACAACTTT..............	23	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................GAGTGGCTGAAAAAGAAA....................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................GTGCCCGATGAGTGGCTGAAAAAG.......................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................TGTGCGGTGCCCGATGAGT..................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................ATTTTGTGCGGTGCCCGATGAGTG.................................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................CGATGAGTGGCTGAAAAA........................................................................................................................................................................................	18	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................GGCTGAAAAAGAAACTGGTG..............................................................................................................................................................................	20	2	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AAGAAACTGGATAAACT.........................................................................................................................................................................	17	1	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................ATCTCCTTATCTCTACTCTCT........................................................	21	3	8	0.13	1	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................CGAGTGGCTGAAAACGGAAC...................................................................................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................AAGAAAAAGAAGAAGAAGA................................................................................................................	19	0	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................GAAAAAGAAGAACAAGAATAAA...........................................................................................................	22	2	18	0.06	1	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................GCACAAGAAGAAGAAGAATAAC...........................................................................................................	22	2	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................AAAAGAAGAACAAGAATA.............................................................................................................	18	1	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GAAAAAGAAGAAGAAGAA...............................................................................................................	18	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0
......TGGTGGGACCAGTGGATC...................................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0

GGTTATTCCACCCGGTTCACCTAGGCTGGCCATGTAAAACACGCCACGGGCTACTCACCGACTTTTTCTTTGACCCATTTGAGTTTTTGGTGTTATTGACTAATTGACACAGCGTCATGGTTCTTTTTCTTCTTCTTCTTATTGCATCGTATGGTTACGTTAAATTTTGATTAGTAGAAAAATAGAGATAAGAGAAGCGTCACCTCCGCCGTCTTGGCGGGTGGCGATCTGTTGAAATATCGTCATTCATG *******************************************************************************************************************....((.............(((...........................((((.....)))))))..........))..*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V047 embryo	M027 male body	V116 male body	SRR060683 160_testes_total	M061 embryo
.....................................................................................................................................................................................................................TTGGCTGGCGGCGAACTGTTGA................	22	3	2	0.50	1	1	0	0	0	0
................................................................................................................................................................................................................................CAATCTCTTGAAATATCGGC.......	20	3	6	0.17	1	0	1	0	0	0
................................................................................................................................................................................................................................CGATGTGTTGAAATGTCG.........	18	2	15	0.07	1	0	0	1	0	0
..............................................................................TTGCGTTTCTGGTGTTAT...........................................................................................................................................................	18	2	18	0.06	1	0	0	0	1	0
.................................................................................................................................................................................AAAAAAAGAGATCAGAGAA.......................................................	19	2	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12963:2489919-2490169 -	dvi_10194	CCAATAAGG------TGGGCCAAGTGGATCCGACCGGTACATTTTGTGCGGTGCCCGATGAGTGGCTGAAAAAGAAACTGGGTAAA-CTCAAA--AACCAC------------------------------------AATA----A----CTGAT----TAAC-----------------------TGTGTCGCAGTACCAAGAAAAAGAAGA-AGAA---------------------GAATAA---CGTAGCAT-------ACCAATGCAATTTAA---------------------------------AACTA-------A--T-C--ATCTTTT-----TATCT----CTAT----TCTCTTCGCAGTGGAGGCGGCAGAACCGCCCACCGCTAGACAACTTTATAGCAGTAAGTAC--
droMoj3	scaffold_6500:12658059-12658343 -		CCAATAAGGTG------GGCGAGGTGGATCCAACGGGCACCTTTTGTGCGGTGCCCGATGAGTGGCTCAAAAAGAAACTTGGTAAA-AAAAAA--AAAAGA--AAAA--ATAAA---TAAAAAAC--ATGAATTAATAAAT----AAAGAGTTACAATCAAAATGTAC------ATGAAAAGAAACC--G-------------------------CAATGAAATTA------------------------------TATATCAAGTGGAAAAT---TTT-----AC-----------------TTATTT-TTGT--ATTT-------------TTTTT-TTCTCTCTT----TCTC----TCTATTCACAGTCGAGGCGGCGGAACCACCAACGGCTCGACAATTGTATAGCAGTAAGTA---
droGri2	scaffold_15252:2100002-2100247 -		CCACAAAG------GTGGGCCAGGTGGATCCGAGCGGCACTTTTTGTGCGGTGCCCGATGAATGGCTGAAAAAGAAATTGGGTAAA-AGCAAC--GGCAAT------------------------------------AATT----A----AGGCT----CGCT-----------------------T--GCTCAA-----------ACGAGGA-ACTA---------------------AAAGAA---AACAACAC------TCC-----------AATTCCAATTTA----------AGT--T---GA-AAACTG-------A--TTC--AGTTTGT-----CTTTG----TTCT----TCTCTTCACAGTGGAAGCGGCAGAACCACCCACCGCCAGGCAATTGTATAGCAGTAAGTAC--
droWil2	scf2_1100000004521:6746517-6746806 -		CGACCAAACCCACATTGGGTCAAGTGGATCCCTCGGGTACTTTCTGTGCTGTACCCGATGAATGGCTGAGAAAGAAAATGGGTAAA-GGC--A--ATCAGAGTCAAAGAATAATCTGTAATCGGCTTTTGAATAACCAACT----A----ACAA---T----------------CTGAAAGGAAACT--G--------------------------AACAAAAATA------------------------------TA-------------TA-------------TTTCACTTTTTTTATTCAATTTGCTCATT-A------ATG--TGAATTCTCT-TT-TTGCAA----TTTTCTCCTTTCAATGCAGTTGAATCGGCCACTCCACCGACTGCTGGTCAATTATATAGCAGTAAGTAT--
dp5	4_group1:739404-739674 +		CGAATAAACCGACACTGGGCCAGGTGGATCCTTCCGGCTCTTTTTGTGCCGTTCCCGATGAATGGCTGCGAAAGAAAATGGGTAAA-GATTCA--ATCAGC------------------------------------TACT----A----ACCAA-----AA------AGGTCT----------------------------------------------------CCTGTCCCCTTCTGCAAGATTCAACTGCAATTCGACTAAC--CGATT-------------TTCCCCTTTTTTTGCTGTAGTGG-AGATT-A------ATG--T--ATTTTCT-----TTCGT----TTCT----CTCATTCACAGTTGAATCGGCAGCGCCACCCACCGCAGGACAATTGTCCAGCAGTAAGTAT--
droPer2	scaffold_5:4471201-4471471 -		CGAATAAACCGACACTGGGCCAGGTGGATCCTTCCGGCTCTTTTTGTGCCGTTCCCGATGAATGGCTGCGAAAGAAAATGGGTAAA-GATTCA--ATCAGC------------------------------------TACT----A----ACCAA-----AA------AGGTCT----------------------------------------------------CCTGTCCCCTTCTGCAAGATTCAACTGCAATTCGACTAAC--CGATT-------------TTCCCGTTTTTTTGCTGTAGTGG-ATATT-A------ATG--T--ATTTACT-----TTCGT----TTCT----CTCATTCACAGTTGAATCGGCAGCGCCACCCACCGCAGGACAATTGTCCAGCAGTAAGTAT--
droAna3	scaffold_13337:12104546-12104625 -		CGAACAAGCCTACCTTGGGCCAGGTGGATCCATCCGGCACCTTTTGTGCCGTCCCAGACGACTGGATGCGCAAAAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000393314:9858-9942 -		AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-------A--TTA--TATGTGT-----TATTA----ATTT----TACATTTACAGTGAAGTCTGCAGCCCCACCCTCCGCCGGCCAATTGTACAGCAGTAAGTT---
droKik1	scf7180000302644:59455-59703 +		CAAACAAGCCGGCGTTGGGTCAGGTT---ATTGCCGGGACATTTTGTGCAGTGCCCGATGATTGGCTGAGAAGAAAATTGGGTAAT-GACTGAGAATCAGC------------------------------------AAATACTTA----ACCCA----AAGC-----------------------C--CTGTGC-----------AAG-AATG-TTT--------ACTGATGACACTAACAACA---CTCAGCACTTGC------------------------TC-----------------T----------CC-------A--TTA--AATTTAT-----TGCCT----TTTT----CTTGTTCGCAGTTGAGTCTGCGGCACCTCCCACAGCTGGCCAGTTATACAGTAGTAAGTAA--
droFic1	scf7180000453618:6119-6200 -		CCAATAAAGCGGAGTTGGGTCAAGTC---ATCGCAGGCACTTTCTGTGCAGTGCCTGATGATTGGCTTCGAAAAAAAATGGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491284:39023-39265 -		CTCATAAAGCGGCATTGGGTCAGGTC---ATTGCAGGCACTTATTGTGCTGTGCCAGATGATTGGCTGCGAAAAAAAATGGGTAA-TAACTAA--ATCAGC------------------------------------TACT----A----GCTCT------GA-----------------------T--GTGCG-------------CAGAAAA-TAA------------------------------CAACGTACTTGGCCCAACATCA--CTTTTGT-----C----------------------AG-TGGC--T-TATAC---A-T--ACATTTT-----TTCTT----CTTT----CTCATTCTCAGTTGAATCAGCAGCACCACCCTCCGCAGGTCAATTGTACAGCAGTAAGTA---
droRho1	scf7180000768569:7840-8085 -		CCAATAAAGCGGCATTGGGTCAGGTC---ATTGCAGGCACTTTTTGTGCAGTGCCAGATGATTGGCTGCGAAAAAAAATGGGTAA-TGACTTA--ATTAGC------------------------------------AACT----A----ACTCA----GTGA-----------------------C--GTGTGC-----------AGA-AAAA-TTG------------------------------AAACGCACTTGGACTAACACCACACC--TAT---------------------------TAA-ACGT--TTC-TAC---A-T--ATATTCT-----TTCTT----CTAT----CTAATTCTCAGTTGAATCAGCAGCACCACCCACCGCAGGCCAATTGTACAGTAGTAAGTA---
droBia1	scf7180000301233:3935-4189 +		CAAATAAAACGGAATTGGGACATGTT---ATAGCAGGCACATTTTGTACTGTACCCGATGATTGGCTGCGAAAAAAAATGGGTAA-TGTCTAA--ATAAGC------------------------------------AGCA----A----GCCCA----GAGT-----------------------T--GTGCGC-----------ACG-ACAA-TTT------------------------------AAACACACTTAAAGAAAAACCGAATACATGT-----TT-----------------CTATA--AGGT--ATTATATAT-A-T--GTTTCGC-----ATATT----TTTT----CTCGTTCTCAGTTGAATCAGCAGCACCACCGTCTGCACCCCAACTGTACAGCAGTAAGTA---
droTak1	scf7180000414144:20741-20986 +		CCAATAAAGCGGAATTAGGTGAAGTC---ATCGCAGGCACTTTTTGTACAGTACCAGACGATTGGCTGCGAAAAAAAATGGGTAA-TGACTAA--ATCAGC------------------------------------AACA----A----GTCCA----AT---------------------------------------------ACAATAAA-TTA------------------------------AAATAAACTTGGACTTACATTACA-TCCTAC-----TT-----------------CTATAA-TGTA--TTTACAC------------TTCTGT-TTACCTTGTTCTGT----CTCGTTCTCAGTTGAATCAGCAGCACCCCCCACTGCAGGACAATTGTACAGCAGTAAGT----
droEug1	scf7180000409710:56656-56908 -		CAAACACAACGGAATTGGGTCATGTT---ATTGCAGGCACATTCTGTGCAGTACCAGATGATTGGCTGCGAAAGAAAATGGGTAAT-GAGTAA--TTAAAC------------------------------------AACT----A----GAACA----GAAT-----------------------T--GTTCAT-----------ATG-AAAATTAA------------------------------AGAAAAAATAGGTCCACTGACACATTTTTGT-----TT-----------------GATTGC-ATTT--AT--------A-C--ATTTTTC-----TAATT----TGTT----TTTATTTTCAGTTGAATCAGCAGAACCGCCCACTGCAGGGCAATTGTACAGCAGTAAGTAAGC
dm3	chr2L:22741747-22741994 +		CTAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACGAT--ATCAGC------------------------------------CACT----A----ACACA-----AGC-----------------------T--GTGCCA-----------GTA-AAAA-TAT------------------------------TACAGCAGCCGGACCATCATCGATCTCTTGT-----CG-----------------CAATGA-AGGT--ATCATAC------------TTT-----CATTT----TTAT----TTTGCTTCCAGTTGAGACGGCAGCATCCCCCACGGCAGGTCAATTGTACAGCAGTAAGTA---
droSim2	2l:22861818-22862066 +		CTAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACGAT--AACAGC------------------------------------CACT----A----ACAAA-----AGC-----------------------T--GTGCCA-----------GTA-AAAA-TAT------------------------------TACAGCATCCGGACCATCATCGATCTCTTGT-----CG-----------------CAATGA-AGGT--ATCATAC------------TTT-----CATTT----TTAT----TTTGCTTCCAGTTGAGACGGCAGCATCGCCCACTGCAGGTCAATTGTACAGCAGTAAGTAT--
droSec2	scaffold_110:65885-66133 -		CTAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACGAT--ATCAGC------------------------------------CACT----A----ACAAA-----AGC-----------------------T--GTGCCA-----------GTA-AAAA-TAT------------------------------TACAGCATCCGGACCATCATCGATCTCTTGT-----CG-----------------CAATGA-AGGT--ATCATAC------------TTT-----CATTT----TTAT----TTTGCTTCCAGTTGAGACGGCAGCATCGCCCACTGCAGGTCAATTGTACAGCAGTAAGTAT--
droYak3	chr2h:386591-386839 -		CTAATAAGACGGAGTTGGGCCAAGTT---ATTGCGGGAACTTTTTGTGCAGTCCCTGATGATTGGCTGCGAAAAAAATTGGGTAAATAACTAT--AACTGT------------------------------------CACT----A----GCATA----AAGC-----------------------T--GTGGCC-----------GTA-AAAA-TAA------------------------------AACAACATCCGTACCATCAACGAACTCTTGT-----CC-----------------TTATGG-AGGT--ATCAAAC------------TTT-----CACTT----TTAT----ATTGTTTACAGTTGAGACGGCAGCATCACCCACTGCAGGTCAATTATACAGTAGTAAGTA---
droEre2	scaffold_4845:1784172-1784420 -		CCAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGTGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACTAT--ATCAGC------------------------------------CACT----A----ACATA----AAGC-----------------------T--GTGCCT-----------GTG-GATA-TAA------------------------------TACAGCATCCGCATCATCAACGAACTCTTAA-----CC-----------------CTATAG-TGGT--ATCATAC------------TTT-----CCTTT----TTAT----TTTGTTTGCAGTTGAGACGGCAGCATCACCCACTGCAGGTCAATTGTACAGCAGTAAGTA---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CCAATAAGG------TGGGCCAAGTGGATCCGACCGGTACATTTTGTGCGGTGCCCGATGAGTGGCTGAAAAAGAAACTGGGTAAA-CTCAAA--AACCAC------------------------------------AATA----A----CTGAT----TAAC-----------------------TGTGTCGCAGTACCAAGAAAAAGAAGA-AGAA---------------------GAATAA---CGTAGCAT-------ACCAATGCAATTTAA---------------------------------AACTA-------A--T-C--ATCTTTT-----TATCT----CTAT----TCTCTTCGCAGTGGAGGCGGCAGAACCGCCCACCGCTAGACAACTTTATAGCAGTAAGTAC--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GGCAGAACCGCCCACCGCTA.........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GACCGGTACATTTTGTGCGGTGCC................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CATTTTGTGCGGTGCCCGATGAGT........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................CGATGAGTGGCTGAAAAAGA............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCGGTACATTTTGTGCGGT...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GGGCCAAGTGGATCCGACCGGT.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GGCAGAACCGCCCACCGCTAGACAACTT.................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CGATGAGTGGCTGAAAAAGAAACT........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAAGTGGATCCGACCGGTACATTTTGT........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GTGGCTGAAAAAGAAACT........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GTACCAAGAAAAAGAAGA-A................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GTGCGGTGCCCGATGAGT........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................ATTTTGTGCGGTGCCCGATGA..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GGCAGAACCGCCCACCGCTAGACAACT..................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AATAAGG------TGGGCCAAGTGGATC.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CGGCAGAACCGCCCACCGCTAGACAC....................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCCACCGCTAGACAACTTT................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GAGTGGCTGAAAAAGAAA..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGCCCGATGAGTGGCTGAAAAAG.............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TGTGCGGTGCCCGATGAGT........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................ATTTTGTGCGGTGCCCGATGAGTG.......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................CGATGAGTGGCTGAAAAA..............................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................GGCTGAAAAAGAAACTGGTG....................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AAGAAAAAGAAGA-AGAA---------------------GA......................................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GAAAAAGAAGA-AGAA---------------------GAA.....................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCAATAAGGTG------GGCGAGGTGGATCCAACGGGCACCTTTTGTGCGGTGCCCGATGAGTGGCTCAAAAAGAAACTTGGTAAA-AAAAAA--AAAAGA--AAAA--ATAAA---TAAAAAAC--ATGAATTAATAAAT----AAAGAGTTACAATCAAAATGTAC------ATGAAAAGAAACC--G-------------------------CAATGAAATTA------------------------------TATATCAAGTGGAAAAT---TTT-----AC-----------------TTATTT-TTGT--ATTT-------------TTTTT-TTCTCTCTT----TCTC----TCTATTCACAGTCGAGGCGGCGGAACCACCAACGGCTCGACAATTGTATAGCAGTAAGTA---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................GAGGTGGATCCAACGGGC.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GGCGGAACCACCAACGGCTCGAC......................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTCGACAATTGTATAGCAT.........	25	1	1.00	1	1	0	0	0	0	0
..........................................TTTGTGCGGTGCCCGATGAG.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................ACCTTTTGTGCGGTGCCC...............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
...........................ATCCAACGGGCACCTTTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................ACCTTTTGTGCGGTGCCCGAT............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

CCACAAAG------GTGGGCCAGGTGGATCCGAGCGGCACTTTTTGTGCGGTGCCCGATGAATGGCTGAAAAAGAAATTGGGTAAA-AGCAAC--GGCAAT------------------------------------AATT----A----AGGCT----CGCT-----------------------T--GCTCAA-----------ACGAGGA-ACTA---------------------AAAGAA---AACAACAC------TCC-----------AATTCCAATTTA----------AGT--T---GA-AAACTG-------A--TTC--AGTTTGT-----CTTTG----TTCT----TCTCTTCACAGTGGAAGCGGCAGAACCACCCACCGCCAGGCAATTGTATAGCAGTAAGTAC--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CGACCAAACCCACATTGGGTCAAGTGGATCCCTCGGGTACTTTCTGTGCTGTACCCGATGAATGGCTGAGAAAGAAAATGGGTAAA-GGC--A--ATCAGAGTCAAAGAATAATCTGTAATCGGCTTTTGAATAACCAACT----A----ACAA---T----------------CTGAAAGGAAACT--G--------------------------AACAAAAATA------------------------------TA-------------TA-------------TTTCACTTTTTTTATTCAATTTGCTCATT-A------ATG--TGAATTCTCT-TT-TTGCAA----TTTTCTCCTTTCAATGCAGTTGAATCGGCCACTCCACCGACTGCTGGTCAATTATATAGCAGTAAGTAT--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................GATGAATGGCTGAGAAAGAAA..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
........................................................GATGAATGGCTGAGAAAGA............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0

dp5

CGAATAAACCGACACTGGGCCAGGTGGATCCTTCCGGCTCTTTTTGTGCCGTTCCCGATGAATGGCTGCGAAAGAAAATGGGTAAA-GATTCA--ATCAGC------------------------------------TACT----A----ACCAA-----AA------AGGTCT----------------------------------------------------CCTGTCCCCTTCTGCAAGATTCAACTGCAATTCGACTAAC--CGATT-------------TTCCCCTTTTTTTGCTGTAGTGG-AGATT-A------ATG--T--ATTTTCT-----TTCGT----TTCT----CTCATTCACAGTTGAATCGGCAGCGCCACCCACCGCAGGACAATTGTCCAGCAGTAAGTAT--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........CGACACTGGGCCAGGTGG............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TTCCCGATGAATGGCTGCGAAAGA............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................CCCGATGAATGGCTGCGAA...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTTCCCGATGAATGGCTGCGAAA..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TTCCCGATGAATGGCTGCGAAA..............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................CCCGATGAATGGCTGCGAAAG.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTTCCCGATGAATGGCTGCGA................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................GATCCTTCCGGCTCTTTTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ACCGCAGGACAATTGTCCAGCATC........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AGCGCCACCCACCGCAGGA.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGAATAAACCGACACTGGGCCAGGTGGATCCTTCCGGCTCTTTTTGTGCCGTTCCCGATGAATGGCTGCGAAAGAAAATGGGTAAA-GATTCA--ATCAGC------------------------------------TACT----A----ACCAA-----AA------AGGTCT----------------------------------------------------CCTGTCCCCTTCTGCAAGATTCAACTGCAATTCGACTAAC--CGATT-------------TTCCCGTTTTTTTGCTGTAGTGG-ATATT-A------ATG--T--ATTTACT-----TTCGT----TTCT----CTCATTCACAGTTGAATCGGCAGCGCCACCCACCGCAGGACAATTGTCCAGCAGTAAGTAT--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................GTTCCCGATGAATGGCTGCGAA...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ATTTACT-----TTCGT----TTCT----CTCATTCACAG....................................................	27	1	1.00	1	0	1	0	0	0	0

droAna3

CGAACAAGCCTACCTTGGGCCAGGTGGATCCATCCGGCACCTTTTGTGCCGTCCCAGACGACTGGATGCGCAAAAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................ATCCATCCGGCACCTTTTGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0

droBip1

AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-------A--TTA--TATGTGT-----TATTA----ATTT----TACATTTACAGTGAAGTCTGCAGCCCCACCCTCCGCCGGCCAATTGTACAGCAGTAAGTT---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAACAAGCCGGCGTTGGGTCAGGTT---ATTGCCGGGACATTTTGTGCAGTGCCCGATGATTGGCTGAGAAGAAAATTGGGTAAT-GACTGAGAATCAGC------------------------------------AAATACTTA----ACCCA----AAGC-----------------------C--CTGTGC-----------AAG-AATG-TTT--------ACTGATGACACTAACAACA---CTCAGCACTTGC------------------------TC-----------------T----------CC-------A--TTA--AATTTAT-----TGCCT----TTTT----CTTGTTCGCAGTTGAGTCTGCGGCACCTCCCACAGCTGGCCAGTTATACAGTAGTAAGTAA--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCAATAAAGCGGAGTTGGGTCAAGTC---ATCGCAGGCACTTTCTGTGCAGTGCCTGATGATTGGCTTCGAAAAAAAATGGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTCATAAAGCGGCATTGGGTCAGGTC---ATTGCAGGCACTTATTGTGCTGTGCCAGATGATTGGCTGCGAAAAAAAATGGGTAA-TAACTAA--ATCAGC------------------------------------TACT----A----GCTCT------GA-----------------------T--GTGCG-------------CAGAAAA-TAA------------------------------CAACGTACTTGGCCCAACATCA--CTTTTGT-----C----------------------AG-TGGC--T-TATAC---A-T--ACATTTT-----TTCTT----CTTT----CTCATTCTCAGTTGAATCAGCAGCACCACCCTCCGCAGGTCAATTGTACAGCAGTAAGTA---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCAATAAAGCGGCATTGGGTCAGGTC---ATTGCAGGCACTTTTTGTGCAGTGCCAGATGATTGGCTGCGAAAAAAAATGGGTAA-TGACTTA--ATTAGC------------------------------------AACT----A----ACTCA----GTGA-----------------------C--GTGTGC-----------AGA-AAAA-TTG------------------------------AAACGCACTTGGACTAACACCACACC--TAT---------------------------TAA-ACGT--TTC-TAC---A-T--ATATTCT-----TTCTT----CTAT----CTAATTCTCAGTTGAATCAGCAGCACCACCCACCGCAGGCCAATTGTACAGTAGTAAGTA---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAATAAAACGGAATTGGGACATGTT---ATAGCAGGCACATTTTGTACTGTACCCGATGATTGGCTGCGAAAAAAAATGGGTAA-TGTCTAA--ATAAGC------------------------------------AGCA----A----GCCCA----GAGT-----------------------T--GTGCGC-----------ACG-ACAA-TTT------------------------------AAACACACTTAAAGAAAAACCGAATACATGT-----TT-----------------CTATA--AGGT--ATTATATAT-A-T--GTTTCGC-----ATATT----TTTT----CTCGTTCTCAGTTGAATCAGCAGCACCACCGTCTGCACCCCAACTGTACAGCAGTAAGTA---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCAATAAAGCGGAATTAGGTGAAGTC---ATCGCAGGCACTTTTTGTACAGTACCAGACGATTGGCTGCGAAAAAAAATGGGTAA-TGACTAA--ATCAGC------------------------------------AACA----A----GTCCA----AT---------------------------------------------ACAATAAA-TTA------------------------------AAATAAACTTGGACTTACATTACA-TCCTAC-----TT-----------------CTATAA-TGTA--TTTACAC------------TTCTGT-TTACCTTGTTCTGT----CTCGTTCTCAGTTGAATCAGCAGCACCCCCCACTGCAGGACAATTGTACAGCAGTAAGT----	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAAACACAACGGAATTGGGTCATGTT---ATTGCAGGCACATTCTGTGCAGTACCAGATGATTGGCTGCGAAAGAAAATGGGTAAT-GAGTAA--TTAAAC------------------------------------AACT----A----GAACA----GAAT-----------------------T--GTTCAT-----------ATG-AAAATTAA------------------------------AGAAAAAATAGGTCCACTGACACATTTTTGT-----TT-----------------GATTGC-ATTT--AT--------A-C--ATTTTTC-----TAATT----TGTT----TTTATTTTCAGTTGAATCAGCAGAACCGCCCACTGCAGGGCAATTGTACAGCAGTAAGTAAGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACGAT--ATCAGC------------------------------------CACT----A----ACACA-----AGC-----------------------T--GTGCCA-----------GTA-AAAA-TAT------------------------------TACAGCAGCCGGACCATCATCGATCTCTTGT-----CG-----------------CAATGA-AGGT--ATCATAC------------TTT-----CATTT----TTAT----TTTGCTTCCAGTTGAGACGGCAGCATCCCCCACGGCAGGTCAATTGTACAGCAGTAAGTA---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................TTTTGCGCAGTGCCCGATGATTGGC.....................................................................................................................................................................................................................................................................................................................................................................	25	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	12	0	0	0	0	0
.....AAGACGGAATTGGGCCAAGTT---..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTTTTGCGCAGTGCCCGATGATTGGC.....................................................................................................................................................................................................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0
..............TTGGGCCAAGTT---ATTGCGGGAACTTT............................................................................................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0
...............TGGGCCAAGTT---ATTGCGGGAACTTTT...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0
..............................................................................................................................................................................................TGCCA-----------GTA-AAAA-TAT------------------------------TACAGCAGCCGGA..................................................................................................................................................................	28	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TCATCGATCTCTTGT-----CG-----------------CAATGA-AGG..............................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATTGGGCCAAGTT---ATTGCGGGAACT..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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......................................ACTTTTTGCGCAGTGCCCGATG...........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TCTCTTGT-----CG-----------------CAATGA-AGGT--ATCATA.....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................T----TTAT----TTTGCTTCCAGTTGAGAC.............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TCGATCTCTTGT-----CG-----------------CAATGA-AGGT--A..........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCCCCCACGGCAGGT.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CTAATAAGACGGAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................ATTGGCTGCGAAAAAAATTG.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TCCAGTTGAGACGGCAGCATCCCC.................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TGCCCGATGATTGGCTGCGT................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CTAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACGAT--AACAGC------------------------------------CACT----A----ACAAA-----AGC-----------------------T--GTGCCA-----------GTA-AAAA-TAT------------------------------TACAGCATCCGGACCATCATCGATCTCTTGT-----CG-----------------CAATGA-AGGT--ATCATAC------------TTT-----CATTT----TTAT----TTTGCTTCCAGTTGAGACGGCAGCATCGCCCACTGCAGGTCAATTGTACAGCAGTAAGTAT--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............TGGGCCAAGTT---ATTGCGGGAACTTTT...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
........................................................................................................................................................................................................................................................TACAGCATCCGGACCATCATCGATC......................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
.............ATTGGGCCAAGTT---ATTGCGGGAACT..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................CAAGTT---ATTGCGGGAACTTTTTGCGC......................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................TGATTGGCTGCGAAAAAAATTGGGTAA..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................TGCGGGAACTTTTTGCGCAGTGCCCGA.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................TTGCGGGAACTTTTTGCGCAGT...................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............TGGGCCAAGTT---ATTGCGGGAACTTTTTG.........................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................TAT------------------------------TACAGCATCCGGACCATCATCGATC......................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TAT----TTTGCTTCCAGTTGAGACGGC..........................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................T------------------------------TACAGCATCCGGACCATCATCGAT.......................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTT-----CATTT----TTAT----TTTGCTTCCAGTTGA................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................GATGATTGGCTGCGAA...............................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CATAC------------TTT-----CATTT----TTAT----TTTGCTTCCAGT...................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CTAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACGAT--ATCAGC------------------------------------CACT----A----ACAAA-----AGC-----------------------T--GTGCCA-----------GTA-AAAA-TAT------------------------------TACAGCATCCGGACCATCATCGATCTCTTGT-----CG-----------------CAATGA-AGGT--ATCATAC------------TTT-----CATTT----TTAT----TTTGCTTCCAGTTGAGACGGCAGCATCGCCCACTGCAGGTCAATTGTACAGCAGTAAGTAT--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............ATTGGGCCAAGTT---ATTGCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................AT------------------------------TACAGCATCCGGACCATC.............................................................................................................................................................	20	1	1.00	1	0	0	0	1
.................................................AGTGCCCGATGATTGGCTGCGA................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0

droYak3

CTAATAAGACGGAGTTGGGCCAAGTT---ATTGCGGGAACTTTTTGTGCAGTCCCTGATGATTGGCTGCGAAAAAAATTGGGTAAATAACTAT--AACTGT------------------------------------CACT----A----GCATA----AAGC-----------------------T--GTGGCC-----------GTA-AAAA-TAA------------------------------AACAACATCCGTACCATCAACGAACTCTTGT-----CC-----------------TTATGG-AGGT--ATCAAAC------------TTT-----CACTT----TTAT----ATTGTTTACAGTTGAGACGGCAGCATCACCCACTGCAGGTCAATTATACAGTAGTAAGTA---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................CTGATGATTGGCTGCGAAAA.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GTTGGGCCAAGTT---ATTGCGGGAAC...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
CTAATAAGACGGAGTTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................GTT---ATTGCGGGAACTTTTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....TAAGACGGAGTTGGGCCAAGTT---A.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...ATAAGACGGAGTTGGGCCAAGTT---..........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CCAATAAGACGGAATTGGGCCAAGTT---ATTGCGGGAACTTTTTGTGCAGTGCCCGATGATTGGCTGCGAAAAAAATTGGGTAAATAACTAT--ATCAGC------------------------------------CACT----A----ACATA----AAGC-----------------------T--GTGCCT-----------GTG-GATA-TAA------------------------------TACAGCATCCGCATCATCAACGAACTCTTAA-----CC-----------------CTATAG-TGGT--ATCATAC------------TTT-----CCTTT----TTAT----TTTGTTTGCAGTTGAGACGGCAGCATCACCCACTGCAGGTCAATTGTACAGCAGTAAGTA---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............ATTGGGCCAAGTT---ATTGCGGG..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................T-----CCTTT----TTAT----TTTGTTTGCA.....................................................	20	1	2.00	2	1	0	0	1	0	0	0
............AATTGGGCCAAGTT---ATTGCGGG..................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.......................................................CGATGATTGGCTGCGAAAAAAATTG.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.............ATTGGGCCAAGTT---ATTGCGGGAACTTTT...........................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCAATTGTACAGC...........	18	1	1.00	1	1	0	0	0	0	0	0
...........GAATTGGGCCAAGTT---ATTGCGGGAACT..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCATCACCCACTGCAGGTCAATT..................	28	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AGCATCACCCACTGCAGGTCAATTGTACA.............	29	1	1.00	1	1	0	0	0	0	0	0
...............................TGCGGGAACTTTTTGTGCAGTGCCCG..............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TGAGACGGCAGCATCACCCACT.............................	22	1	1.00	1	0	0	0	0	0	1	0
.CAATAAGACGGAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.............................................GTGCAGTGCCCGATGATTGGCTGC..................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...........GAATTGGGCCAAGTT---ATTGCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.............ATTGGGCCAAGTT---ATTGCGGGAA................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

dvi_10194

scaffold_12963:2489969-2490119 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.6	-7.5	-6.6